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Exception on hpy.heap() #13

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juan-carvajal opened this issue Oct 23, 2019 · 2 comments
Closed

Exception on hpy.heap() #13

juan-carvajal opened this issue Oct 23, 2019 · 2 comments

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@juan-carvajal
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juan-carvajal commented Oct 23, 2019 •
edited by zhuyifei1999
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Getting exception output after this:

from guppy import hpy
h=hpy().heap()
print(h)

This is the exception:

Traceback (most recent call last):
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 216, in getattr2
    x = self.data[name]
KeyError: 'hv'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 281, in getattr3
    x = getattr(Clamp, name)
AttributeError: type object '_GLUECLAMP_' has no attribute 'hv'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\juan0\Documents\GitHub\VMIwithDRL\VMIwithDRL\src\implementation\VMImodel.py", line 2, in <module>
    from agent_model.training_agent import TrainingAgent
  File "C:\Users\juan0\Documents\GitHub\VMIwithDRL\VMIwithDRL\src\agent_model\training_agent.py", line 8, in <module>
    h=hpy().heap()
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\heapy\Use.py", line 181, in heap
    h = self.View.heap()
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\heapy\View.py", line 353, in heap
    self.root = objs
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 53, in __setattr__
    return self._share.setattr(self, name, value)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 371, in setattr
    im(inter, value)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\heapy\View.py", line 191, in _set_root
    self.hv.root = root
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 50, in __getattr__
    return self._share.getattr(self, name)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 209, in getattr
    d = self.getattr2(inter, dct, owner, name)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 227, in getattr2
    x = self.getattr3(inter, name)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\etc\Glue.py", line 321, in getattr3
    x = f()
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\heapy\View.py", line 162, in _get_hv
    is_hiding_calling_interpreter=self.is_hiding_calling_interpreter)
  File "C:\Users\juan0\Anaconda3\envs\tensor-cpu\lib\site-packages\guppy\heapy\View.py", line 394, in new_hv
    hv = self.heapyc.HeapView(root, heapdefs)
TypeError: heapdefs must be a capsule object
@zhuyifei1999
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Owner

Hi

I updated the description to show the blocks more clearly.

What is the Python version? And could you print out the value of heapdefs right before the erroring line hv = self.heapyc.HeapView(root, heapdefs)?

Currently guppy3 loads attribute _NyHeapDefs_ across all Python modules and expect them to be sane.

@zhuyifei1999
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zhuyifei1999 commented Nov 10, 2019 •
edited
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For future reference: Installing the set of packages that https://github.com/juan-carvajal/VMIwithDRL imports, I see this is the tensorboard.compat.tensorflow_stub.pywrap_tensorflow module.

Reproducing the failure with latest release of guppy3:

(base) zhuyifei1999@zhuyifei1999-ThinkPad-T480 /tmp/VMIwithDRL/VMIwithDRL/src $ pip install -I guppy3
Collecting guppy3
  Using cached https://files.pythonhosted.org/packages/fc/bf/107811a412cc4bf9428088b926c32e7087f43e054160fdc0abbb1a753226/guppy3-3.0.8-cp37-cp37m-manylinux1_x86_64.whl
Installing collected packages: guppy3
Successfully installed guppy3-3.0.8
(base) zhuyifei1999@zhuyifei1999-ThinkPad-T480 /tmp/VMIwithDRL/VMIwithDRL/src $ PYTHONPATH=. python -i implementation/VMImodel.py 
Traceback (most recent call last):
  File "/tmp/VMIwithDRL/VMIwithDRL/src/optimizer/AllocationOptimizerCplexDocPlex.py", line 90, in allocate
    mdl.solve()
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/model.py", line 4152, in solve
    return self.fatal("CPLEX runtime not found: please install CPLEX or solve this model on DOcplexcloud")
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/model.py", line 884, in fatal
    self._error_handler.fatal(msg, args)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/error_handler.py", line 210, in fatal
    raise DOcplexException(resolved_message)
docplex.mp.utils.DOcplexException: CPLEX runtime not found: please install CPLEX or solve this model on DOcplexcloud

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "implementation/VMImodel.py", line 97, in <module>
    agent.run(validateRuns=10
  File "/tmp/VMIwithDRL/VMIwithDRL/src/agent_model/training_agent_torch.py", line 90, in run
    state, action, next_state, reward, terminal = self.model.model_logic(current_state, action)
  File "implementation/VMImodel.py", line 63, in model_logic
    rep = opt.allocate()
  File "/tmp/VMIwithDRL/VMIwithDRL/src/optimizer/AllocationOptimizerCplexDocPlex.py", line 112, in allocate
    a[h][r] = 0
UnboundLocalError: local variable 'a' referenced before assignment
>>> __import__('guppy').hpy().heap()
/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/torch/distributed/distributed_c10d.py:100: UserWarning: torch.distributed.reduce_op is deprecated, please use torch.distributed.ReduceOp instead
  warnings.warn("torch.distributed.reduce_op is deprecated, please use "
Traceback (most recent call last):
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 216, in getattr2
    x = self.data[name]
KeyError: 'hv'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 281, in getattr3
    x = getattr(Clamp, name)
AttributeError: type object '_GLUECLAMP_' has no attribute 'hv'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/Use.py", line 181, in heap
    h = self.View.heap()
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/View.py", line 353, in heap
    self.root = objs
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 53, in __setattr__
    return self._share.setattr(self, name, value)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 371, in setattr
    im(inter, value)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/View.py", line 191, in _set_root
    self.hv.root = root
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 50, in __getattr__
    return self._share.getattr(self, name)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 209, in getattr
    d = self.getattr2(inter, dct, owner, name)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 227, in getattr2
    x = self.getattr3(inter, name)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/etc/Glue.py", line 321, in getattr3
    x = f()
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/View.py", line 162, in _get_hv
    is_hiding_calling_interpreter=self.is_hiding_calling_interpreter)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/View.py", line 394, in new_hv
    hv = self.heapyc.HeapView(root, heapdefs)
TypeError: heapdefs must be a capsule object
>>>

Trying to install latest commit:

(base) zhuyifei1999@zhuyifei1999-ThinkPad-T480 /tmp/VMIwithDRL/VMIwithDRL/src $ pip install -I https://github.com/zhuyifei1999/guppy3/archive/master.zip
Collecting https://github.com/zhuyifei1999/guppy3/archive/master.zip
  Downloading https://github.com/zhuyifei1999/guppy3/archive/master.zip
     / 2.1MB 1.5MB/s
Building wheels for collected packages: guppy3
  Building wheel for guppy3 (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /home/zhuyifei1999/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3of2lepl --python-tag cp37
       cwd: /tmp/pip-req-build-y9490o0o/
  Complete output (100 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.7
  creating build/lib.linux-x86_64-3.7/guppy
  copying guppy/__init__.py -> build/lib.linux-x86_64-3.7/guppy
  creating build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/xterm.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/tkcursors.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/textView.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/etc.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/cmd.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/__init__.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/RE_Rect.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/RE.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/KnuthBendix.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/KanExtension.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/IterPermute.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/Help.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/Glue.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/FSA.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/Descriptor.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/Code.py -> build/lib.linux-x86_64-3.7/guppy/etc
  copying guppy/etc/Cat.py -> build/lib.linux-x86_64-3.7/guppy/etc
  creating build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/__init__.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/XHTML.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Text.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Tester.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/SpecNodes.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Main.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Latex.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Html.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Help.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Gsml.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Filer.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/FileIO.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Exceptions.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/DottedTree.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  copying guppy/gsl/Document.py -> build/lib.linux-x86_64-3.7/guppy/gsl
  creating build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/pbhelp.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/View.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Use.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Target.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/RemoteConstants.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Remote.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/RM.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Prof.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Monitor.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/ImpSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Doc.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Console.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  copying guppy/heapy/Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy
  creating build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_sf.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_menuleak.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_heapyc.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_gsl.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_dependencies.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_all.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_View.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_RetaGraph.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_ER.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/test_Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/support.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  copying guppy/heapy/test/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
  creating build/lib.linux-x86_64-3.7/guppy/sets
  copying guppy/sets/test.py -> build/lib.linux-x86_64-3.7/guppy/sets
  copying guppy/sets/__init__.py -> build/lib.linux-x86_64-3.7/guppy/sets
  running build_ext
  building 'guppy.sets.setsc' extension
  creating build/temp.linux-x86_64-3.7
  creating build/temp.linux-x86_64-3.7/src
  creating build/temp.linux-x86_64-3.7/src/sets
  gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/sets.c -o build/temp.linux-x86_64-3.7/src/sets/sets.o
  gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/bitset.c -o build/temp.linux-x86_64-3.7/src/sets/bitset.o
  gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/nodeset.c -o build/temp.linux-x86_64-3.7/src/sets/nodeset.o
  gcc -pthread -shared -B /home/zhuyifei1999/anaconda3/compiler_compat -L/home/zhuyifei1999/anaconda3/lib -Wl,-rpath=/home/zhuyifei1999/anaconda3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/src/sets/sets.o build/temp.linux-x86_64-3.7/src/sets/bitset.o build/temp.linux-x86_64-3.7/src/sets/nodeset.o -o build/lib.linux-x86_64-3.7/guppy/sets/setsc.cpython-37m-x86_64-linux-gnu.so
  /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
  /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
  /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
  /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
  /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: file not recognized: file format not recognized
  collect2: error: ld returned 1 exit status
  error: command 'gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for guppy3
  Running setup.py clean for guppy3
Failed to build guppy3
Installing collected packages: guppy3
  Running setup.py install for guppy3 ... error
    ERROR: Command errored out with exit status 1:
     command: /home/zhuyifei1999/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p0uvcigh/install-record.txt --single-version-externally-managed --compile
         cwd: /tmp/pip-req-build-y9490o0o/
    Complete output (100 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.7
    creating build/lib.linux-x86_64-3.7/guppy
    copying guppy/__init__.py -> build/lib.linux-x86_64-3.7/guppy
    creating build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/xterm.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/tkcursors.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/textView.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/etc.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/cmd.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/__init__.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/RE_Rect.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/RE.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/KnuthBendix.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/KanExtension.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/IterPermute.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/Help.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/Glue.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/FSA.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/Descriptor.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/Code.py -> build/lib.linux-x86_64-3.7/guppy/etc
    copying guppy/etc/Cat.py -> build/lib.linux-x86_64-3.7/guppy/etc
    creating build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/__init__.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/XHTML.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Text.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Tester.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/SpecNodes.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Main.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Latex.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Html.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Help.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Gsml.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Filer.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/FileIO.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Exceptions.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/DottedTree.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    copying guppy/gsl/Document.py -> build/lib.linux-x86_64-3.7/guppy/gsl
    creating build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/pbhelp.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/View.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Use.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Target.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/RemoteConstants.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Remote.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/RM.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Prof.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Monitor.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/ImpSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Doc.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Console.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    copying guppy/heapy/Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy
    creating build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_sf.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_menuleak.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_heapyc.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_gsl.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_dependencies.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_all.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_View.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_RetaGraph.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_ER.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/test_Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/support.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    copying guppy/heapy/test/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
    creating build/lib.linux-x86_64-3.7/guppy/sets
    copying guppy/sets/test.py -> build/lib.linux-x86_64-3.7/guppy/sets
    copying guppy/sets/__init__.py -> build/lib.linux-x86_64-3.7/guppy/sets
    running build_ext
    building 'guppy.sets.setsc' extension
    creating build/temp.linux-x86_64-3.7
    creating build/temp.linux-x86_64-3.7/src
    creating build/temp.linux-x86_64-3.7/src/sets
    gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/sets.c -o build/temp.linux-x86_64-3.7/src/sets/sets.o
    gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/bitset.c -o build/temp.linux-x86_64-3.7/src/sets/bitset.o
    gcc -pthread -B /home/zhuyifei1999/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/zhuyifei1999/anaconda3/include/python3.7m -c src/sets/nodeset.c -o build/temp.linux-x86_64-3.7/src/sets/nodeset.o
    gcc -pthread -shared -B /home/zhuyifei1999/anaconda3/compiler_compat -L/home/zhuyifei1999/anaconda3/lib -Wl,-rpath=/home/zhuyifei1999/anaconda3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/src/sets/sets.o build/temp.linux-x86_64-3.7/src/sets/bitset.o build/temp.linux-x86_64-3.7/src/sets/nodeset.o -o build/lib.linux-x86_64-3.7/guppy/sets/setsc.cpython-37m-x86_64-linux-gnu.so
    /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
    /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
    /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
    /home/zhuyifei1999/anaconda3/compiler_compat/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges
    /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o: file not recognized: file format not recognized
    collect2: error: ld returned 1 exit status
    error: command 'gcc' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /home/zhuyifei1999/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-y9490o0o/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p0uvcigh/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

Ok compile failure; let's build a wheel with a non-anaconda Python:

(venv) zhuyifei1999@zhuyifei1999-ThinkPad-T480 ~/guppy3 $ python setup.py bdist_wheel
running bdist_wheel
running build
running build_py
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/guppy
copying guppy/__init__.py -> build/lib.linux-x86_64-3.7/guppy
creating build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/Cat.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/Code.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/Descriptor.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/FSA.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/Glue.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/Help.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/IterPermute.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/KanExtension.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/KnuthBendix.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/RE.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/RE_Rect.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/__init__.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/cmd.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/etc.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/textView.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/tkcursors.py -> build/lib.linux-x86_64-3.7/guppy/etc
copying guppy/etc/xterm.py -> build/lib.linux-x86_64-3.7/guppy/etc
creating build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Exceptions.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/__init__.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Document.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/DottedTree.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/FileIO.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Filer.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Gsml.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Help.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Html.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Latex.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Main.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/SpecNodes.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Tester.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/Text.py -> build/lib.linux-x86_64-3.7/guppy/gsl
copying guppy/gsl/XHTML.py -> build/lib.linux-x86_64-3.7/guppy/gsl
creating build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Target.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Console.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Doc.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/ImpSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Monitor.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Prof.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/RM.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Remote.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/RemoteConstants.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/Use.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/View.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy
copying guppy/heapy/pbhelp.py -> build/lib.linux-x86_64-3.7/guppy/heapy
creating build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/__init__.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_RetaGraph.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_Spec.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/support.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_Classifiers.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_ER.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_OutputHandling.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_Part.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_Path.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_RefPat.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_UniSet.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_View.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_all.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_dependencies.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_gsl.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_heapyc.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_menuleak.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
copying guppy/heapy/test/test_sf.py -> build/lib.linux-x86_64-3.7/guppy/heapy/test
creating build/lib.linux-x86_64-3.7/guppy/sets
copying guppy/sets/__init__.py -> build/lib.linux-x86_64-3.7/guppy/sets
copying guppy/sets/test.py -> build/lib.linux-x86_64-3.7/guppy/sets
running build_ext
building 'guppy.sets.setsc' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/src
creating build/temp.linux-x86_64-3.7/src/sets
x86_64-pc-linux-gnu-gcc -pthread -fPIC -I/home/zhuyifei1999/guppy3/venv/include -I/usr/include/python3.7m -c src/sets/sets.c -o build/temp.linux-x86_64-3.7/src/sets/sets.o
x86_64-pc-linux-gnu-gcc -pthread -fPIC -I/home/zhuyifei1999/guppy3/venv/include -I/usr/include/python3.7m -c src/sets/bitset.c -o build/temp.linux-x86_64-3.7/src/sets/bitset.o
x86_64-pc-linux-gnu-gcc -pthread -fPIC -I/home/zhuyifei1999/guppy3/venv/include -I/usr/include/python3.7m -c src/sets/nodeset.c -o build/temp.linux-x86_64-3.7/src/sets/nodeset.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O3 -fgraphite-identity -floop-nest-optimize -fdevirtualize-at-ltrans -fipa-pta -fno-semantic-interposition -flto=7 -fuse-linker-plugin -falign-functions=32 -pipe -ggdb -fno-finite-math-only -L. build/temp.linux-x86_64-3.7/src/sets/sets.o build/temp.linux-x86_64-3.7/src/sets/bitset.o build/temp.linux-x86_64-3.7/src/sets/nodeset.o -L/usr/lib64 -lpython3.7m -o build/lib.linux-x86_64-3.7/guppy/sets/setsc.cpython-37m-x86_64-linux-gnu.so
building 'guppy.heapy.heapyc' extension
creating build/temp.linux-x86_64-3.7/src/heapy
x86_64-pc-linux-gnu-gcc -pthread -fPIC -I/home/zhuyifei1999/guppy3/venv/include -I/usr/include/python3.7m -c src/heapy/heapyc.c -o build/temp.linux-x86_64-3.7/src/heapy/heapyc.o
x86_64-pc-linux-gnu-gcc -pthread -fPIC -I/home/zhuyifei1999/guppy3/venv/include -I/usr/include/python3.7m -c src/heapy/stdtypes.c -o build/temp.linux-x86_64-3.7/src/heapy/stdtypes.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O3 -fgraphite-identity -floop-nest-optimize -fdevirtualize-at-ltrans -fipa-pta -fno-semantic-interposition -flto=7 -fuse-linker-plugin -falign-functions=32 -pipe -ggdb -fno-finite-math-only -L. build/temp.linux-x86_64-3.7/src/heapy/heapyc.o build/temp.linux-x86_64-3.7/src/heapy/stdtypes.o -L/usr/lib64 -lpython3.7m -o build/lib.linux-x86_64-3.7/guppy/heapy/heapyc.cpython-37m-x86_64-linux-gnu.so
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/guppy
copying build/lib.linux-x86_64-3.7/guppy/__init__.py -> build/bdist.linux-x86_64/wheel/guppy
creating build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/Cat.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/Code.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/Descriptor.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/FSA.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/Glue.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/Help.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/IterPermute.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/KanExtension.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/KnuthBendix.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/RE.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/RE_Rect.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/__init__.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/cmd.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/etc.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/textView.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/tkcursors.py -> build/bdist.linux-x86_64/wheel/guppy/etc
copying build/lib.linux-x86_64-3.7/guppy/etc/xterm.py -> build/bdist.linux-x86_64/wheel/guppy/etc
creating build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Exceptions.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/__init__.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Document.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/DottedTree.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/FileIO.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Filer.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Gsml.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Help.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Html.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Latex.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Main.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/SpecNodes.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Tester.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/Text.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
copying build/lib.linux-x86_64-3.7/guppy/gsl/XHTML.py -> build/bdist.linux-x86_64/wheel/guppy/gsl
creating build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Target.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Classifiers.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Console.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Doc.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/ImpSet.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Monitor.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/OutputHandling.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Part.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Path.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Prof.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/RM.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/RefPat.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Remote.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/RemoteConstants.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Spec.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/UniSet.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/Use.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/View.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/__init__.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
copying build/lib.linux-x86_64-3.7/guppy/heapy/pbhelp.py -> build/bdist.linux-x86_64/wheel/guppy/heapy
creating build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/__init__.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_RetaGraph.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_Spec.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/support.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_Classifiers.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_ER.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_OutputHandling.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_Part.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_Path.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_RefPat.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_UniSet.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_View.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_all.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_dependencies.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_gsl.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_heapyc.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_menuleak.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/test/test_sf.py -> build/bdist.linux-x86_64/wheel/guppy/heapy/test
copying build/lib.linux-x86_64-3.7/guppy/heapy/heapyc.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/guppy/heapy
creating build/bdist.linux-x86_64/wheel/guppy/sets
copying build/lib.linux-x86_64-3.7/guppy/sets/__init__.py -> build/bdist.linux-x86_64/wheel/guppy/sets
copying build/lib.linux-x86_64-3.7/guppy/sets/test.py -> build/bdist.linux-x86_64/wheel/guppy/sets
copying build/lib.linux-x86_64-3.7/guppy/sets/setsc.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/guppy/sets
running install_egg_info
running egg_info
writing guppy3.egg-info/PKG-INFO
writing dependency_links to guppy3.egg-info/dependency_links.txt
writing top-level names to guppy3.egg-info/top_level.txt
reading manifest file 'guppy3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'guppy3.egg-info/SOURCES.txt'
Copying guppy3.egg-info to build/bdist.linux-x86_64/wheel/guppy3-3.0.8-py3.7.egg-info
running install_scripts
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
creating build/bdist.linux-x86_64/wheel/guppy3-3.0.8.dist-info/WHEEL
creating 'dist/guppy3-3.0.8-cp37-cp37m-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'guppy/__init__.py'
adding 'guppy/etc/Cat.py'
adding 'guppy/etc/Code.py'
adding 'guppy/etc/Descriptor.py'
adding 'guppy/etc/FSA.py'
adding 'guppy/etc/Glue.py'
adding 'guppy/etc/Help.py'
adding 'guppy/etc/IterPermute.py'
adding 'guppy/etc/KanExtension.py'
adding 'guppy/etc/KnuthBendix.py'
adding 'guppy/etc/RE.py'
adding 'guppy/etc/RE_Rect.py'
adding 'guppy/etc/__init__.py'
adding 'guppy/etc/cmd.py'
adding 'guppy/etc/etc.py'
adding 'guppy/etc/textView.py'
adding 'guppy/etc/tkcursors.py'
adding 'guppy/etc/xterm.py'
adding 'guppy/gsl/Document.py'
adding 'guppy/gsl/DottedTree.py'
adding 'guppy/gsl/Exceptions.py'
adding 'guppy/gsl/FileIO.py'
adding 'guppy/gsl/Filer.py'
adding 'guppy/gsl/Gsml.py'
adding 'guppy/gsl/Help.py'
adding 'guppy/gsl/Html.py'
adding 'guppy/gsl/Latex.py'
adding 'guppy/gsl/Main.py'
adding 'guppy/gsl/SpecNodes.py'
adding 'guppy/gsl/Tester.py'
adding 'guppy/gsl/Text.py'
adding 'guppy/gsl/XHTML.py'
adding 'guppy/gsl/__init__.py'
adding 'guppy/heapy/Classifiers.py'
adding 'guppy/heapy/Console.py'
adding 'guppy/heapy/Doc.py'
adding 'guppy/heapy/ImpSet.py'
adding 'guppy/heapy/Monitor.py'
adding 'guppy/heapy/OutputHandling.py'
adding 'guppy/heapy/Part.py'
adding 'guppy/heapy/Path.py'
adding 'guppy/heapy/Prof.py'
adding 'guppy/heapy/RM.py'
adding 'guppy/heapy/RefPat.py'
adding 'guppy/heapy/Remote.py'
adding 'guppy/heapy/RemoteConstants.py'
adding 'guppy/heapy/Spec.py'
adding 'guppy/heapy/Target.py'
adding 'guppy/heapy/UniSet.py'
adding 'guppy/heapy/Use.py'
adding 'guppy/heapy/View.py'
adding 'guppy/heapy/__init__.py'
adding 'guppy/heapy/heapyc.cpython-37m-x86_64-linux-gnu.so'
adding 'guppy/heapy/pbhelp.py'
adding 'guppy/heapy/test/__init__.py'
adding 'guppy/heapy/test/support.py'
adding 'guppy/heapy/test/test_Classifiers.py'
adding 'guppy/heapy/test/test_ER.py'
adding 'guppy/heapy/test/test_OutputHandling.py'
adding 'guppy/heapy/test/test_Part.py'
adding 'guppy/heapy/test/test_Path.py'
adding 'guppy/heapy/test/test_RefPat.py'
adding 'guppy/heapy/test/test_RetaGraph.py'
adding 'guppy/heapy/test/test_Spec.py'
adding 'guppy/heapy/test/test_UniSet.py'
adding 'guppy/heapy/test/test_View.py'
adding 'guppy/heapy/test/test_all.py'
adding 'guppy/heapy/test/test_dependencies.py'
adding 'guppy/heapy/test/test_gsl.py'
adding 'guppy/heapy/test/test_heapyc.py'
adding 'guppy/heapy/test/test_menuleak.py'
adding 'guppy/heapy/test/test_sf.py'
adding 'guppy/sets/__init__.py'
adding 'guppy/sets/setsc.cpython-37m-x86_64-linux-gnu.so'
adding 'guppy/sets/test.py'
adding 'guppy3-3.0.8.dist-info/LICENSE'
adding 'guppy3-3.0.8.dist-info/METADATA'
adding 'guppy3-3.0.8.dist-info/WHEEL'
adding 'guppy3-3.0.8.dist-info/top_level.txt'
adding 'guppy3-3.0.8.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel

(base) zhuyifei1999@zhuyifei1999-ThinkPad-T480 /tmp/VMIwithDRL/VMIwithDRL/src $ pip install -I ~/guppy3/dist/guppy3-3.0.8-cp37-cp37m-linux_x86_64.whl
Processing /home/zhuyifei1999/guppy3/dist/guppy3-3.0.8-cp37-cp37m-linux_x86_64.whl
Installing collected packages: guppy3
Successfully installed guppy3-3.0.8
(base) zhuyifei1999@zhuyifei1999-ThinkPad-T480 /tmp/VMIwithDRL/VMIwithDRL/src $ PYTHONPATH=. python -i implementation/VMImodel.py 
Traceback (most recent call last):
  File "/tmp/VMIwithDRL/VMIwithDRL/src/optimizer/AllocationOptimizerCplexDocPlex.py", line 90, in allocate
    mdl.solve()
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/model.py", line 4152, in solve
    return self.fatal("CPLEX runtime not found: please install CPLEX or solve this model on DOcplexcloud")
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/model.py", line 884, in fatal
    self._error_handler.fatal(msg, args)
  File "/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/docplex/mp/error_handler.py", line 210, in fatal
    raise DOcplexException(resolved_message)
docplex.mp.utils.DOcplexException: CPLEX runtime not found: please install CPLEX or solve this model on DOcplexcloud

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "implementation/VMImodel.py", line 97, in <module>
    agent.run(validateRuns=10
  File "/tmp/VMIwithDRL/VMIwithDRL/src/agent_model/training_agent_torch.py", line 90, in run
    state, action, next_state, reward, terminal = self.model.model_logic(current_state, action)
  File "implementation/VMImodel.py", line 63, in model_logic
    rep = opt.allocate()
  File "/tmp/VMIwithDRL/VMIwithDRL/src/optimizer/AllocationOptimizerCplexDocPlex.py", line 112, in allocate
    a[h][r] = 0
UnboundLocalError: local variable 'a' referenced before assignment
>>> __import__('guppy').hpy().heap()
/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/torch/distributed/distributed_c10d.py:100: UserWarning: torch.distributed.reduce_op is deprecated, please use torch.distributed.ReduceOp instead
  warnings.warn("torch.distributed.reduce_op is deprecated, please use "
/home/zhuyifei1999/anaconda3/lib/python3.7/site-packages/guppy/heapy/View.py:163: UserWarning: Ignoring non-capsule object tensorboard.compat.tensorflow_stub.pywrap_tensorflow._NyHeapDefs_
  '{}._NyHeapDefs_'.format(n))
Partition of a set of 1070406 objects. Total size = 138181181 bytes.
 Index  Count   %     Size   % Cumulative  % Kind (class / dict of class)
     0 271909  25 38402781  28  38402781  28 str
     1 292748  27 25839176  19  64241957  46 tuple
     2 131079  12 10406396   8  74648353  54 bytes
     3  65907   6  9536720   7  84185073  61 types.CodeType
     4  62179   6  8953776   6  93138849  67 function
     5   6843   1  6875576   5 100014425  72 type
     6   3708   0  5820696   4 105835121  77 dict of module
     7  11314   1  4607376   3 110442497  80 dict (no owner)
     8   6843   1  3677728   3 114120225  83 dict of type
     9   7583   1  1883648   1 116003873  84 dict of function
<2169 more rows. Type e.g. '_.more' to view.>
>>> import tensorboard.compat.tensorflow_stub.pywrap_tensorflow
>>> tensorboard.compat.tensorflow_stub.pywrap_tensorflow._NyHeapDefs_
0
>>> tensorboard.compat.tensorflow_stub.pywrap_tensorflow.foobar
0
>>>

Relevant code: https://github.com/tensorflow/tensorboard/blob/688aabd67aa6a6f098709643b0a5e672a7d0b01f/tensorboard/compat/tensorflow_stub/pywrap_tensorflow.py#L34

A warning is generated for a faulty module getattr implementation, without aborting heapy. I think I can declare this fixed.

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@zhuyifei1999 @juan-carvajal