20160504

2016-05-04 Xiaowei Zhan [email protected]

* Reduce memory consumption for logistic regression
* Clean codes

2016-04-22 Xiaowei Zhan [email protected]

    * Fix crash when analyzing large samples (>80,000)
    * Add experimental multiple trait analysis
    * Add richer outputs for --meta score model e.g. SE(beta)
    * Add estimates for residual model (pheno~covar) in --meta score model
    * Clean codes (refactoring codes in the large-scale)
    * Update third-party libraries

2015-12-01 Xiaowei Zhan [email protected]

    * Fix a bug in meta covariance file (happens only when: unrelated individuals, has covariates, residual variance not one)
    * Improve single variant score test (--single score)
    * Add (optionally) SE for score test in meta-analysis models (e.g. --meta score[se])
    * Clean codes

2015-11-18 Xiaowei Zhan [email protected]

    * Add analytic SKAT-O model
    * Clean codes

2015-11-10 Xiaowei Zhan [email protected]

    * Improve kinship calculation (--kinshipEigen)
    * Improve dosage supports for both autosomes and X chromosomes
    * Improve logistic regression speed in meta analysis
    * Add allelic Fisher's exact test
    * Add NumPolyVar in gene/set based tests
    * Add pre-regression checkings
    * Avoid SegFault when the data files are inaccessible
    * Clean codes