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cobra_sbml_validator

web-based validator for COBRA models in SBML and JSON

To run the server on your own machine, do the following (only tested on Linux):

  1. Install the beta latest version of cobrapy (use pip install cobra --pre). Ensure that libglpk is installed correctly, as stated in the installation directions.

  2. Install the latest versions of python-libsbml, lxml, and jsonschema

  3. Install esolver. A pre-compiled version available with ABSOLUTELY NO WARRANTY is available here

  4. run python cobra_sbml_validator.py

  5. Navigate to http://localhost:5000/