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Request for a parameter for a parallel task #13

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ScarletAmarantine opened this issue Apr 26, 2023 · 0 comments
Open

Request for a parameter for a parallel task #13

ScarletAmarantine opened this issue Apr 26, 2023 · 0 comments

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@ScarletAmarantine
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Thank you for your outstanding contribution in the field of cell-cell communication for spatial transcriptome analysis.

As a Python novice, I have been attempting to apply ct.tl.spatial_communication to my own dataset, and have encountered two questions:

What is the recommended approach for running this function in parallel?
Could you explain the rationale behind restricting the distance threshold to 200μm?
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@ScarletAmarantine