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7 tests fail #1916

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yurivict opened this issue May 27, 2024 · 1 comment
Closed

7 tests fail #1916

yurivict opened this issue May 27, 2024 · 1 comment
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bug Potential issues with the zarr-python library

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@yurivict
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Zarr version

2.18.2

Numcodecs version

0.12.1

Python Version

3.9

Operating System

FreeBSD

Installation

port

Description

========================================================================================= FAILURES ==========================================================================================
________________________________________________________________________________ TestFSStore.test_hierarchy _________________________________________________________________________________

self = <zarr.tests.test_storage.TestFSStore object at 0x2f1ae25b53a0>

    def test_hierarchy(self):
        # setup
        store = self.create_store()
        store[self.root + "a"] = b"aaa"
        store[self.root + "b"] = b"bbb"
        store[self.root + "c/d"] = b"ddd"
        store[self.root + "c/e/f"] = b"fff"
        store[self.root + "c/e/g"] = b"ggg"
    
        # check keys
        assert self.root + "a" in store
        assert self.root + "b" in store
        assert self.root + "c/d" in store
        assert self.root + "c/e/f" in store
        assert self.root + "c/e/g" in store
        assert self.root + "c" not in store
        assert self.root + "c/" not in store
        assert self.root + "c/e" not in store
        assert self.root + "c/e/" not in store
        assert self.root + "c/d/x" not in store
    
        # check __getitem__
        with pytest.raises(KeyError):
            store[self.root + "c"]
        with pytest.raises(KeyError):
            store[self.root + "c/e"]
        with pytest.raises(KeyError):
            store[self.root + "c/d/x"]
    
        # test getsize (optional)
        if hasattr(store, "getsize"):
            # TODO: proper behavior of getsize?
            #       v3 returns size of all nested arrays, not just the
            #       size of the arrays in the current folder.
            if self.version == 2:
                assert 6 == store.getsize()
            else:
                assert 15 == store.getsize()
            assert 3 == store.getsize("a")
            assert 3 == store.getsize("b")
            if self.version == 2:
                assert 3 == store.getsize("c")
            else:
                assert 9 == store.getsize("c")
            assert 3 == store.getsize("c/d")
            assert 6 == store.getsize("c/e")
            assert 3 == store.getsize("c/e/f")
            assert 3 == store.getsize("c/e/g")
            # non-existent paths
            assert 0 == store.getsize("x")
            assert 0 == store.getsize("a/x")
            assert 0 == store.getsize("c/x")
            assert 0 == store.getsize("c/x/y")
            assert 0 == store.getsize("c/d/y")
            assert 0 == store.getsize("c/d/y/z")
    
            # access item via full path
            assert 3 == store.getsize(self.root + "a")
    
        # test listdir (optional)
        if hasattr(store, "listdir"):
            assert {"a", "b", "c"} == set(store.listdir(self.root))
            assert {"d", "e"} == set(store.listdir(self.root + "c"))
            assert {"f", "g"} == set(store.listdir(self.root + "c/e"))
            # no exception raised if path does not exist or is leaf
            assert [] == store.listdir(self.root + "x")
            assert [] == store.listdir(self.root + "a/x")
            assert [] == store.listdir(self.root + "c/x")
            assert [] == store.listdir(self.root + "c/x/y")
            assert [] == store.listdir(self.root + "c/d/y")
            assert [] == store.listdir(self.root + "c/d/y/z")
>           assert [] == store.listdir(self.root + "c/e/f")
E           AssertionError: assert [] == ['f']
E             
E             Right contains one more item: 'f'
E             
E             Full diff:
E             + []
E             - [
E             -     'f',
E             - ]

zarr/tests/test_storage.py:409: AssertionError
_________________________________________________________________________________ TestFSStore.test_complex __________________________________________________________________________________

self = <zarr.tests.test_storage.TestFSStore object at 0x2f1ae25a28b0>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store
>       assert not os.listdir(str(path2))
E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmptydmy17s')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmptydmy17s' = str('/tmp/tmptydmy17s')

zarr/tests/test_storage.py:1155: AssertionError
________________________________________________________________________________ TestN5FSStore.test_complex _________________________________________________________________________________

self = <zarr.tests.test_storage.TestN5FSStore object at 0x2f1ae25fab20>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store
>       assert not os.listdir(str(path2))
E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmp1vxmxf1m')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmp1vxmxf1m' = str('/tmp/tmp1vxmxf1m')

zarr/tests/test_storage.py:1155: AssertionError
_______________________________________________________________________________ TestN5FSStore.test_hierarchy ________________________________________________________________________________

self = <zarr.tests.test_storage.TestN5FSStore object at 0x2f1ae2603f40>

    def test_hierarchy(self):
        # setup
        store = self.create_store()
        store[self.root + "a"] = b"aaa"
        store[self.root + "b"] = b"bbb"
        store[self.root + "c/d"] = b"ddd"
        store[self.root + "c/e/f"] = b"fff"
        store[self.root + "c/e/g"] = b"ggg"
    
        # check keys
        assert self.root + "a" in store
        assert self.root + "b" in store
        assert self.root + "c/d" in store
        assert self.root + "c/e/f" in store
        assert self.root + "c/e/g" in store
        assert self.root + "c" not in store
        assert self.root + "c/" not in store
        assert self.root + "c/e" not in store
        assert self.root + "c/e/" not in store
        assert self.root + "c/d/x" not in store
    
        # check __getitem__
        with pytest.raises(KeyError):
            store[self.root + "c"]
        with pytest.raises(KeyError):
            store[self.root + "c/e"]
        with pytest.raises(KeyError):
            store[self.root + "c/d/x"]
    
        # test getsize (optional)
        if hasattr(store, "getsize"):
            # TODO: proper behavior of getsize?
            #       v3 returns size of all nested arrays, not just the
            #       size of the arrays in the current folder.
            if self.version == 2:
                assert 6 == store.getsize()
            else:
                assert 15 == store.getsize()
            assert 3 == store.getsize("a")
            assert 3 == store.getsize("b")
            if self.version == 2:
                assert 3 == store.getsize("c")
            else:
                assert 9 == store.getsize("c")
            assert 3 == store.getsize("c/d")
            assert 6 == store.getsize("c/e")
            assert 3 == store.getsize("c/e/f")
            assert 3 == store.getsize("c/e/g")
            # non-existent paths
            assert 0 == store.getsize("x")
            assert 0 == store.getsize("a/x")
            assert 0 == store.getsize("c/x")
            assert 0 == store.getsize("c/x/y")
            assert 0 == store.getsize("c/d/y")
            assert 0 == store.getsize("c/d/y/z")
    
            # access item via full path
            assert 3 == store.getsize(self.root + "a")
    
        # test listdir (optional)
        if hasattr(store, "listdir"):
            assert {"a", "b", "c"} == set(store.listdir(self.root))
            assert {"d", "e"} == set(store.listdir(self.root + "c"))
            assert {"f", "g"} == set(store.listdir(self.root + "c/e"))
            # no exception raised if path does not exist or is leaf
            assert [] == store.listdir(self.root + "x")
            assert [] == store.listdir(self.root + "a/x")
            assert [] == store.listdir(self.root + "c/x")
            assert [] == store.listdir(self.root + "c/x/y")
            assert [] == store.listdir(self.root + "c/d/y")
            assert [] == store.listdir(self.root + "c/d/y/z")
>           assert [] == store.listdir(self.root + "c/e/f")
E           AssertionError: assert [] == ['f']
E             
E             Right contains one more item: 'f'
E             
E             Full diff:
E             + []
E             - [
E             -     'f',
E             - ]

zarr/tests/test_storage.py:409: AssertionError
________________________________________________________________________ TestFSStoreWithKeySeparator.test_hierarchy _________________________________________________________________________

self = <zarr.tests.test_storage.TestFSStoreWithKeySeparator object at 0x2f1ae25bc910>

    def test_hierarchy(self):
        # setup
        store = self.create_store()
        store[self.root + "a"] = b"aaa"
        store[self.root + "b"] = b"bbb"
        store[self.root + "c/d"] = b"ddd"
        store[self.root + "c/e/f"] = b"fff"
        store[self.root + "c/e/g"] = b"ggg"
    
        # check keys
        assert self.root + "a" in store
        assert self.root + "b" in store
        assert self.root + "c/d" in store
        assert self.root + "c/e/f" in store
        assert self.root + "c/e/g" in store
        assert self.root + "c" not in store
        assert self.root + "c/" not in store
        assert self.root + "c/e" not in store
        assert self.root + "c/e/" not in store
        assert self.root + "c/d/x" not in store
    
        # check __getitem__
        with pytest.raises(KeyError):
            store[self.root + "c"]
        with pytest.raises(KeyError):
            store[self.root + "c/e"]
        with pytest.raises(KeyError):
            store[self.root + "c/d/x"]
    
        # test getsize (optional)
        if hasattr(store, "getsize"):
            # TODO: proper behavior of getsize?
            #       v3 returns size of all nested arrays, not just the
            #       size of the arrays in the current folder.
            if self.version == 2:
                assert 6 == store.getsize()
            else:
                assert 15 == store.getsize()
            assert 3 == store.getsize("a")
            assert 3 == store.getsize("b")
            if self.version == 2:
                assert 3 == store.getsize("c")
            else:
                assert 9 == store.getsize("c")
            assert 3 == store.getsize("c/d")
            assert 6 == store.getsize("c/e")
            assert 3 == store.getsize("c/e/f")
            assert 3 == store.getsize("c/e/g")
            # non-existent paths
            assert 0 == store.getsize("x")
            assert 0 == store.getsize("a/x")
            assert 0 == store.getsize("c/x")
            assert 0 == store.getsize("c/x/y")
            assert 0 == store.getsize("c/d/y")
            assert 0 == store.getsize("c/d/y/z")
    
            # access item via full path
            assert 3 == store.getsize(self.root + "a")
    
        # test listdir (optional)
        if hasattr(store, "listdir"):
            assert {"a", "b", "c"} == set(store.listdir(self.root))
            assert {"d", "e"} == set(store.listdir(self.root + "c"))
            assert {"f", "g"} == set(store.listdir(self.root + "c/e"))
            # no exception raised if path does not exist or is leaf
            assert [] == store.listdir(self.root + "x")
            assert [] == store.listdir(self.root + "a/x")
            assert [] == store.listdir(self.root + "c/x")
            assert [] == store.listdir(self.root + "c/x/y")
            assert [] == store.listdir(self.root + "c/d/y")
            assert [] == store.listdir(self.root + "c/d/y/z")
>           assert [] == store.listdir(self.root + "c/e/f")
E           AssertionError: assert [] == ['f']
E             
E             Right contains one more item: 'f'
E             
E             Full diff:
E             + []
E             - [
E             -     'f',
E             - ]

zarr/tests/test_storage.py:409: AssertionError
_________________________________________________________________________ TestFSStoreFromFilesystem.test_hierarchy __________________________________________________________________________

self = <zarr.tests.test_storage.TestFSStoreFromFilesystem object at 0x2f1ae25cd370>

    def test_hierarchy(self):
        # setup
        store = self.create_store()
        store[self.root + "a"] = b"aaa"
        store[self.root + "b"] = b"bbb"
        store[self.root + "c/d"] = b"ddd"
        store[self.root + "c/e/f"] = b"fff"
        store[self.root + "c/e/g"] = b"ggg"
    
        # check keys
        assert self.root + "a" in store
        assert self.root + "b" in store
        assert self.root + "c/d" in store
        assert self.root + "c/e/f" in store
        assert self.root + "c/e/g" in store
        assert self.root + "c" not in store
        assert self.root + "c/" not in store
        assert self.root + "c/e" not in store
        assert self.root + "c/e/" not in store
        assert self.root + "c/d/x" not in store
    
        # check __getitem__
        with pytest.raises(KeyError):
            store[self.root + "c"]
        with pytest.raises(KeyError):
            store[self.root + "c/e"]
        with pytest.raises(KeyError):
            store[self.root + "c/d/x"]
    
        # test getsize (optional)
        if hasattr(store, "getsize"):
            # TODO: proper behavior of getsize?
            #       v3 returns size of all nested arrays, not just the
            #       size of the arrays in the current folder.
            if self.version == 2:
                assert 6 == store.getsize()
            else:
                assert 15 == store.getsize()
            assert 3 == store.getsize("a")
            assert 3 == store.getsize("b")
            if self.version == 2:
                assert 3 == store.getsize("c")
            else:
                assert 9 == store.getsize("c")
            assert 3 == store.getsize("c/d")
            assert 6 == store.getsize("c/e")
            assert 3 == store.getsize("c/e/f")
            assert 3 == store.getsize("c/e/g")
            # non-existent paths
            assert 0 == store.getsize("x")
            assert 0 == store.getsize("a/x")
            assert 0 == store.getsize("c/x")
            assert 0 == store.getsize("c/x/y")
            assert 0 == store.getsize("c/d/y")
            assert 0 == store.getsize("c/d/y/z")
    
            # access item via full path
            assert 3 == store.getsize(self.root + "a")
    
        # test listdir (optional)
        if hasattr(store, "listdir"):
            assert {"a", "b", "c"} == set(store.listdir(self.root))
            assert {"d", "e"} == set(store.listdir(self.root + "c"))
            assert {"f", "g"} == set(store.listdir(self.root + "c/e"))
            # no exception raised if path does not exist or is leaf
            assert [] == store.listdir(self.root + "x")
            assert [] == store.listdir(self.root + "a/x")
            assert [] == store.listdir(self.root + "c/x")
            assert [] == store.listdir(self.root + "c/x/y")
            assert [] == store.listdir(self.root + "c/d/y")
            assert [] == store.listdir(self.root + "c/d/y/z")
>           assert [] == store.listdir(self.root + "c/e/f")
E           AssertionError: assert [] == ['f']
E             
E             Right contains one more item: 'f'
E             
E             Full diff:
E             + []
E             - [
E             -     'f',
E             - ]

zarr/tests/test_storage.py:409: AssertionError
_____________________________________________________________________________ TestNestedFSStore.test_hierarchy ______________________________________________________________________________

self = <zarr.tests.test_storage.TestNestedFSStore object at 0x2f1ae260c730>

    def test_hierarchy(self):
        # setup
        store = self.create_store()
        store[self.root + "a"] = b"aaa"
        store[self.root + "b"] = b"bbb"
        store[self.root + "c/d"] = b"ddd"
        store[self.root + "c/e/f"] = b"fff"
        store[self.root + "c/e/g"] = b"ggg"
    
        # check keys
        assert self.root + "a" in store
        assert self.root + "b" in store
        assert self.root + "c/d" in store
        assert self.root + "c/e/f" in store
        assert self.root + "c/e/g" in store
        assert self.root + "c" not in store
        assert self.root + "c/" not in store
        assert self.root + "c/e" not in store
        assert self.root + "c/e/" not in store
        assert self.root + "c/d/x" not in store
    
        # check __getitem__
        with pytest.raises(KeyError):
            store[self.root + "c"]
        with pytest.raises(KeyError):
            store[self.root + "c/e"]
        with pytest.raises(KeyError):
            store[self.root + "c/d/x"]
    
        # test getsize (optional)
        if hasattr(store, "getsize"):
            # TODO: proper behavior of getsize?
            #       v3 returns size of all nested arrays, not just the
            #       size of the arrays in the current folder.
            if self.version == 2:
                assert 6 == store.getsize()
            else:
                assert 15 == store.getsize()
            assert 3 == store.getsize("a")
            assert 3 == store.getsize("b")
            if self.version == 2:
                assert 3 == store.getsize("c")
            else:
                assert 9 == store.getsize("c")
            assert 3 == store.getsize("c/d")
            assert 6 == store.getsize("c/e")
            assert 3 == store.getsize("c/e/f")
            assert 3 == store.getsize("c/e/g")
            # non-existent paths
            assert 0 == store.getsize("x")
            assert 0 == store.getsize("a/x")
            assert 0 == store.getsize("c/x")
            assert 0 == store.getsize("c/x/y")
            assert 0 == store.getsize("c/d/y")
            assert 0 == store.getsize("c/d/y/z")
    
            # access item via full path
            assert 3 == store.getsize(self.root + "a")
    
        # test listdir (optional)
        if hasattr(store, "listdir"):
            assert {"a", "b", "c"} == set(store.listdir(self.root))
            assert {"d", "e"} == set(store.listdir(self.root + "c"))
            assert {"f", "g"} == set(store.listdir(self.root + "c/e"))
            # no exception raised if path does not exist or is leaf
            assert [] == store.listdir(self.root + "x")
            assert [] == store.listdir(self.root + "a/x")
            assert [] == store.listdir(self.root + "c/x")
            assert [] == store.listdir(self.root + "c/x/y")
            assert [] == store.listdir(self.root + "c/d/y")
            assert [] == store.listdir(self.root + "c/d/y/z")
>           assert [] == store.listdir(self.root + "c/e/f")
E           AssertionError: assert [] == ['f']
E             
E             Right contains one more item: 'f'
E             
E             Full diff:
E             + []
E             - [
E             -     'f',
E             - ]

zarr/tests/test_storage.py:409: AssertionError
===================================================================================== warnings summary ======================================================================================

Steps to reproduce

tests

Additional output

No response
@yurivict yurivict added the bug Potential issues with the zarr-python library label May 27, 2024
@yurivict
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Duplicate of #1819

@yurivict yurivict closed this as not planned Won't fix, can't repro, duplicate, stale May 27, 2024
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