setup.py

from setuptools import setup, find_packages
import re
import ast

# version parsing from __init__ pulled from Flask's setup.py
# https://github.com/mitsuhiko/flask/blob/master/setup.py
_version_re = re.compile(r'__version__\s+=\s+(.*)')

with open('q2_karenina/__init__.py', 'rb') as f:
    hit = _version_re.search(f.read().decode('utf-8')).group(1)
    version = str(ast.literal_eval(hit))

setup(
    name="q2-karenina",
    version=version,
    packages=find_packages(),
    # pandas and q2-dummy-types are only required for the dummy methods and
    # visualizers provided as examples. Remove these dependencies when you're
    # ready to develop your plugin, and add your own dependencies (if there are
    # any).
    install_requires=['qiime2>=2.0.0', 'pandas', 'scipy', 'scikit-bio'],
    # THIS IS BROKEN AND NEEDS FIXING
	    # FOR NOW, REQUIRE USERS TO INSTALL KARENINA FIRST
	    # pip install git+https://github.com/zaneveld/karenina
	dependency_links=['git+https://github.com/zaneveld/karenina.git'],
    author="Jesse Zaneveld",
    author_email="zaneveld@gmail.com",
    description="This script simulates microbiome " +
    "change over time using Ornstein-Uhlenbeck (OU) models.  These are " +
    "similar to Brownian motion models, with the exception that they " +
    "include reversion to a mean. Output is a tab-delimited data table " +
    "and figures.",
    url='https://github.com/zaneveld/karenina',
    classifiers=[
        #   3 - Alpha
        #   4 - Beta
        #   5 - Production/Stable
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Qiime2 Users',
        'Topic :: Microbiology :: Visualization and Modeling Tools',
        'License :: GPL',
        #'Programming Language :: Python :: 2',
        #'Programming Language :: Python :: 2.7',
        #'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.4',
        #'Programming Language :: Python :: 3.5',
        'Programming Language :: Python :: 3.6',
    ],
	entry_points={
        "qiime2.plugins":
        ["q2-karenina=q2_karenina.plugin_setup:plugin"]
    },
    package_data={'q2_karenina':['assets/*']}
)