README.md

Interactive exploration of the effect of tissue composition on gene co-expression

Getting Started

Install package:

install.packages("devtools")
devtools::install_github("yunzhang813/simDeNet-R-Package-Shiny")

Launch Shiny application for interactive exploration using pre-uploaded pure cell type data:

library(simDeNet)
runShiny()

Browse vignette for other useful functions included in the pakcage:

browseVignettes("simDeNet")

Citation

Yun Zhang, Jonavelle Cuerdo, Marc K Halushka, Matthew N McCall, 2019. The effect of tissue composition on gene co-expression, Briefings in Bioinformatics, bbz135, https://doi.org/10.1093/bib/bbz135