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Makefile
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# Makefile
#
# Runs tests for pyani module
DATA=tests/test_ani_data
OUT_B=tests/test_ANIb_output
OUT_BLASTALL=tests/test_ANIblastall_output
OUT_M=tests/test_ANIm_output
OUT_TETRA=tests/test_TETRA_output
CLASSES=$(DATA)/classes.tab
LABELS=$(DATA)/labels.tab
all : clean test
sge : clean test_sge
ANIm :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_M) \
-m ANIm --classes $(CLASSES) --labels $(LABELS) -g -v
ANIm_sge :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_M) \
-m ANIm --classes $(CLASSES) --labels $(LABELS) -g -v \
--scheduler SGE
ANIb :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_B) \
-m ANIb --classes $(CLASSES) --labels $(LABELS) -g -v
ANIb_sge :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_B) \
-m ANIb --classes $(CLASSES) --labels $(LABELS) -g -v \
--scheduler SGE
ANIblastall :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_BLASTALL) \
-m ANIblastall --classes $(CLASSES) --labels $(LABELS) -g -v
ANIblastall_sge :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_BLASTALL) \
-m ANIblastall --classes $(CLASSES) --labels $(LABELS) -g -v \
--scheduler SGE
BLAST : ANIb ANIblastall
TETRA :
./average_nucleotide_identity.py -i $(DATA) -o $(OUT_TETRA) \
-m TETRA --classes $(CLASSES) --labels $(LABELS) -g -v
clean :
rm -rf $(OUT_M) $(OUT_B) $(OUT_BLASTALL) $(OUT_TETRA)
test : ANIm ANIb ANIblastall TETRA
test_sge : ANIm_sge ANIb_sge ANIblastall_sge