Gstools suite for gene set analyses in AWS HPC environment.
gstools version: $version Usage: gstools [tool] [parameters]
Arguments:
gs-report Automatically generate Gene Set Analyses results for rnaseq-summary
gs-fisher Perform Fisher's Exact Test for gene lists
gs-fisher-summary Summarize gs-fisher results
gsea-gen Run GSEA analysis
gsea-gen-summary Summarize GSEA analysis results
ipa-gen Generate files for IPA analysis (not implemented)
ipa-summary Summary IPA analysis results
gs-keggpathview/gs-kegg Generate pathway figure for KEGG using Pathview
gs-sbgnview Generate pathway figure for Reactome/Wikipathways using Sbgnview
#format conversion tools
list2matrix Convert gene lists by columns to matrix format
matrix2ms Convert matrix format to Metascape format
list-dbs List current databases for gs-fisher