-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathjournals.bbl
97 lines (83 loc) · 4.34 KB
/
journals.bbl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
\begin{thebibliography}{10}
\bibitem{Raj:2014}
Towfique Raj, Katie Rothamel, Sara Mostafavi, \textbf{Chun Ye}, Mark Lee,
Joseph~M Replogle, Ting Feng, Michelle Lee, Natasha Asinovski, Irene
Frohlich, Selina~H. Imboya, Alina~Von Korff, Yukinori Okada, Nikolaos~A
Patsopoulos, S.~Davis, Cristine McCabe, H~Paik, GP~Srivastava, Soumya
Raychaudhuri, David~A Hafler, Daphne Koller, Aviv Regev, Nir Hacohen, Diane
Mathis, Cristophe Benoist, Barbara~E Stranger, and Philip~De Jager.
\newblock {Polarization of the effects of autoimmune and neurodegenerative risk
alleles in leukocytes}.
\newblock {\em \textbf{Science}}, May 2014.
\bibitem{Joo:2014}
Jong~Wha Joo, Jae~Hoon Sul, Buhm Han, \textbf{Chun Ye}, and Eleazar Eskin.
\newblock Effectively identifying regulatory hotspots while capturing
expression heterogeneity in gene expression studies.
\newblock {\em \textbf{Genome Biology}}, 15(4):R61, 2014.
\bibitem{Lee:2014}
Mark Lee*, \textbf{Chun Ye*}, Alexandria-Chloe Villani, Towfique Raj, Weibo Li,
Thomas~M. Eisenhaure, Selina~H. Imboywa, Portia~I. Chipendo, F.~Ann Ran,
Kamil Slowikowski, Lucas~D. Ward, Khadir Raddassi, Cristin McCabe,
Michelle~H. Lee, Irene Wood, Manolis Kellis, Soumya Raychaudhuri, Feng Zhang,
Barbara~E. Stranger, Christophe~O. Benoist, Philip L.~De Jager, Aviv Regev,
and Nir Hacohen.
\newblock {Common genetic variants that modulate pathogen-sensing in human
dendritic cells}.
\newblock {\em \textbf{Science}}, March 2014.
\newblock \textbf{(Platform Talk and Semi-finalist Award at ASHG 2013)}.
\bibitem{Sul:2013}
Jae~Hoon Sul*, Buhm Han*, \textbf{Chun Ye*}, Ted Choi, and Eleazar Eskin.
\newblock {Effectively identifying eQTLs from multiple tissues combining mixed
model and meta-analytic approaches}.
\newblock {\em \textbf{PLoS Genetics}}, Jun 2013.
\bibitem{Kirby:2013fm}
Andrew Kirby, Andreas Gnirke, David~B Jaffe, ..., \textbf{Chun Ye} (7/43), ...,
and Mark~J Daly.
\newblock {Mutations causing medullary cystic kidney disease type 1 lie in a
large VNTR in MUC1 missed by massively parallel sequencing}.
\newblock {\em \textbf{Nature Genetics}}, Feb 2013.
\bibitem{Friese2012}
Ryan~S. Friese, \textbf{Chun Ye}, Caroline~M. Nievergelt, ..., and Daniel~T.
O'Connor.
\newblock Integrated computational and experimental analysis of the
neuroendorcine transcriptome in genetic hypertension identifies novel control
points for the cardio-metabolic syndrome.
\newblock {\em \textbf{Circulation Cardiovascular Genetics}}, 5(4):430--440,
Aug 2012.
\bibitem{Furlotte01072011}
Nicholas~A. Furlotte, Hyun~Min Kang, \textbf{Chun Ye}, and Eleazar Eskin.
\newblock Mixed-model coexpression: calculating gene coexpression while
accounting for expression heterogeneity.
\newblock {\em \textbf{Bioinformatics}}, 27(13):i288--i294, Jul 2011.
\bibitem{Kang:2010p837}
Eun~Yong Kang, \textbf{Chun Ye}, Ilya Shpitser, and Eleazar Eskin.
\newblock Detecting the presence and absence of causal relationships between
expression of yeast genes with very few samples.
\newblock {\em \textbf{J Comput Biol}}, 17(3):533--46, Mar 2010.
\bibitem{Ye:2009p1617}
\textbf{Chun Ye}, Simon~J Galbraith, James~C Liao, and Eleazar Eskin.
\newblock Using network component analysis to dissect regulatory networks
mediated by transcription factors in yeast.
\newblock {\em \textbf{PLoS Comput Biol}}, 5(3):e1000311, Mar 2009.
\bibitem{Kang:2008p266}
Hyun~Min Kang*, \textbf{Chun Ye*}, and Eleazar Eskin~(* indicates~equal
contribution).
\newblock Accurate discovery of expression quantitative trait loci under
confounding from spurious and genuine regulatory hotspots.
\newblock {\em \textbf{Genetics}}, 180(4):1909--25, Dec 2008.
\bibitem{Ye:2007p1631}
\textbf{Chun Ye} and Eleazar Eskin.
\newblock Discovering tightly regulated and differentially expressed gene sets
in whole genome expression data.
\newblock {\em \textbf{Bioinformatics}}, 23(2):e84--90, Jan 2007.
\bibitem{Bashir:2005p3460}
Ali Bashir, \textbf{Chun Ye}, Alkes~L Price, and Vineet Bafna.
\newblock Orthologous repeats and mammalian phylogenetic inference.
\newblock {\em \textbf{Genome Res}}, 15(7):998--1006, Jul 2005.
\bibitem{Tompa:2005p3459}
Martin Tompa, Nan Li, Timothy~L Bailey, ..., \textbf{Chun Ye} (24/25), and Zhou
Zhu.
\newblock Assessing computational tools for the discovery of transcription
factor binding sites.
\newblock {\em \textbf{Nat Biotechnol}}, 23(1):137--44, Jan 2005.
\end{thebibliography}