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Problem running AnnoPred example #3

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gmgaous opened this issue Dec 12, 2017 · 0 comments
Open

Problem running AnnoPred example #3

gmgaous opened this issue Dec 12, 2017 · 0 comments

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@gmgaous
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gmgaous commented Dec 12, 2017

I am trying to run the examples 4 and 5 by code, but it show ImportError: No module named sklearn (see below). Can you help figure out the problem? Thank you

Code for example 4:
python AnnoPred.py --sumstats=test_data/GWAS_sumstats.txt --ref_gt=test_data/test --val_gt=test_data/test --coord_out=test_output/coord_out --N_sample=69033 --annotation_flag="tier3" --P=0.1 --local_ld_prefix=tmp_test/local_ld --out=test_output/test --temp_dir=tmp_test

It shows error as blow:
Traceback (most recent call last):
File "AnnoPred.py", line 8, in
from annopred import pred_main, LD_PyWrapper
File "/group/biostat-lab/AnnoPred/annopred/pred_main.py", line 19, in
from sklearn import metrics
ImportError: No module named sklearn

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