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learn how to prepare testing data #26

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xulabs opened this issue Aug 25, 2019 · 0 comments
Open

learn how to prepare testing data #26

xulabs opened this issue Aug 25, 2019 · 0 comments
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@xulabs
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xulabs commented Aug 25, 2019

@xiangruz please guide @wendingp


basic steps:

  1. particle picking
    https://github.com/xulabs/aitom/blob/master/tutorials/008_particle_picking.py

  2. autoencoder
    https://github.com/xulabs/aitom/blob/master/tutorials/006_autoencoder.py

  3. template search
    need to prepare a tutorial for this part
    related issue #14


As an exercise, see if you can process the following tomogram

https://github.com/xulabs/aitom/blob/master/tutorials/000_general.md


Then try the public data of the following paper

Routine single-particle CryoEM sample and grid characterization by tomography

The tomograms are separated in multiple empiar engries. Following is one of examples:
https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10143/

@xulabs xulabs added the enhancement New feature or request label Aug 25, 2019
@xulabs xulabs changed the title inspect how to prepare testing data learn how to prepare testing data Aug 25, 2019
@xulabs xulabs removed the enhancement New feature or request label Oct 10, 2019
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