README

mdseqpos python package

Authors: Len Taing, Ying Lei, Cliff Myers, Tao Liu, Ma Jian, et al
Contact: lentaing@jimmy.harvard.edu
URL:'http://cistrome.dfci.harvard.edu/ap'

INSTALLATION INSTRUCTIONS:
1. install package dependencies:
   a. jinja2
   b. ghostscript
   c. numpy v. 1.3.0 or greater
2. copy lib/settings.py.example to lib/settings.py
3. specify where your UCSC assemblies are by modifying ASSEMBLY_DIR and 
   BUILD_DICT in lib/settings.py
4. run version_updater: e.g. $ ./version_updater.py
5. as sudo, type: python setup.py install

// below is my note for internal users.
// if you want install it on brca for your own.
step 1-4 is the same.
5. change NUMPY_PATH in setup.py to:
   os.path.join(sys.prefix,"lib","python"+sys.version[:3], 'numpy')
6. python setup.py install --prefix=<your path>
7. modify PYTHONPATH if necessary