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about the file---"structure_files/chembl.smiles" #1

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zxcvbnmkj opened this issue Jun 16, 2023 · 1 comment
Open

about the file---"structure_files/chembl.smiles" #1

zxcvbnmkj opened this issue Jun 16, 2023 · 1 comment

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@zxcvbnmkj
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I am not majoring in biology or medicine, and I don't quite understand how to find related smiles on ChemBL website. May I ask if you could provide "structure_files/chembl.smiles"? Or give some advice on how to download smiles by myself. Thank you very much!!!!
:-)

@xiaotaw
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xiaotaw commented Jun 19, 2023

Here is a way to download data(including SMILES) from ChEMBL:

  1. click search with an empty query
    screenshot_paintpad_1687065943610

  2. Filter with some conditions, such as

  • only compounds(no targets, assays, documents)
  • only select 'Homo sapiens' in 'Organism'

and download data in a csv format. A column named 'Canonical SMILES' is just what you want.

screenshot_paintpad_1687065995653

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