From d0ed22d9074bd2d354385cabba301bcb03e5f72a Mon Sep 17 00:00:00 2001 From: mgcam Date: Tue, 26 Sep 2023 13:17:46 +0100 Subject: [PATCH] Drop xml fixtures in tests for samplesheet generation (#753) * Samplesheet generation tests - move to mlwh driver. Previously the tests uses XML feeds as a source of LIMS data. All production code is using mlwh database as a source of LIMS data. Amend tests to use mlwh data and the default ml_warehouse lims driver. Amended how an undefined sample public name is dealt with, i.e. converted an error to a warning and assigned a sensible fall-back value. Some samplesheets are generated without names of study owners, followers, etc. This is due to the fact that some studies do not have fixtures for user data. The database fixtures were generated from the current data, this explains multiple differences between the old and new content of the generated samplesheets. In some tests newer production batches were used instead of hand-crafted data. Deleted tests for old scenarios that do not exist in production any longer. Deleted tests that are duplicated by similar tests with more contemporary test data. * Deleted now redundant XML test fixtures --- MANIFEST | 151 +- lib/npg/samplesheet.pm | 4 +- t/47-samplesheet.t | 250 +- .../000-Sample.yml | 9768 +++++++++++++++++ .../000-Study.yml | 363 + .../100-IseqFlowcell.yml | 7054 ++++++++++++ .../100-StudyUser.yml | 37 + t/data/samplesheet/1control7libs_extended.csv | 10 - t/data/samplesheet/4pool4libs_extended.csv | 220 +- t/data/samplesheet/6946_extended.csv | 24 +- t/data/samplesheet/7007_extended.csv | 2 +- t/data/samplesheet/dual_index_default_new.csv | 50 + .../samplesheet/dual_index_extended_new.csv | 34 + t/data/samplesheet/st/batches/1.xml | 87 - t/data/samplesheet/st/batches/13994.xml | 107 - t/data/samplesheet/st/batches/14505.xml | 14 - t/data/samplesheet/st/batches/16537.xml | 51 - t/data/samplesheet/st/batches/16538.xml | 51 - t/data/samplesheet/st/batches/23798.xml | 939 -- t/data/samplesheet/st/projects/1238.xml | 37 - t/data/samplesheet/st/projects/1366.xml | 37 - t/data/samplesheet/st/projects/1422.xml | 37 - t/data/samplesheet/st/projects/521.xml | 37 - t/data/samplesheet/st/projects/678.xml | 37 - t/data/samplesheet/st/projects/714.xml | 37 - t/data/samplesheet/st/samples/1255141.xml | 2860 ----- t/data/samplesheet/st/samples/1289830.xml | 206 - t/data/samplesheet/st/samples/1289832.xml | 207 - t/data/samplesheet/st/samples/1289833.xml | 207 - t/data/samplesheet/st/samples/1289834.xml | 207 - t/data/samplesheet/st/samples/1289835.xml | 207 - t/data/samplesheet/st/samples/1289836.xml | 207 - t/data/samplesheet/st/samples/1289837.xml | 207 - t/data/samplesheet/st/samples/1289838.xml | 207 - t/data/samplesheet/st/samples/1289839.xml | 207 - t/data/samplesheet/st/samples/1289840.xml | 207 - t/data/samplesheet/st/samples/1289841.xml | 207 - t/data/samplesheet/st/samples/1289842.xml | 207 - t/data/samplesheet/st/samples/1289843.xml | 207 - t/data/samplesheet/st/samples/1392234.xml | 207 - t/data/samplesheet/st/samples/1392235.xml | 207 - t/data/samplesheet/st/samples/1392236.xml | 207 - t/data/samplesheet/st/samples/1392237.xml | 207 - t/data/samplesheet/st/samples/1392238.xml | 207 - t/data/samplesheet/st/samples/1660679.xml | 211 - t/data/samplesheet/st/samples/1660680.xml | 211 - t/data/samplesheet/st/samples/1694494.xml | 212 - t/data/samplesheet/st/samples/1694495.xml | 212 - t/data/samplesheet/st/samples/1694496.xml | 212 - t/data/samplesheet/st/samples/1694497.xml | 212 - t/data/samplesheet/st/samples/1694498.xml | 212 - t/data/samplesheet/st/samples/1694499.xml | 212 - t/data/samplesheet/st/samples/1706390.xml | 212 - t/data/samplesheet/st/samples/1706391.xml | 212 - t/data/samplesheet/st/samples/1706392.xml | 212 - t/data/samplesheet/st/samples/1706393.xml | 212 - t/data/samplesheet/st/samples/1706394.xml | 212 - t/data/samplesheet/st/samples/1706395.xml | 212 - t/data/samplesheet/st/samples/1706396.xml | 212 - t/data/samplesheet/st/samples/1706397.xml | 212 - t/data/samplesheet/st/samples/1706398.xml | 212 - t/data/samplesheet/st/samples/1706399.xml | 212 - t/data/samplesheet/st/samples/1706400.xml | 212 - t/data/samplesheet/st/samples/1706401.xml | 212 - t/data/samplesheet/st/samples/1706402.xml | 212 - t/data/samplesheet/st/samples/1706403.xml | 212 - t/data/samplesheet/st/samples/1706404.xml | 212 - t/data/samplesheet/st/samples/1706405.xml | 212 - t/data/samplesheet/st/samples/1706406.xml | 212 - t/data/samplesheet/st/samples/1706407.xml | 212 - t/data/samplesheet/st/samples/1706408.xml | 212 - t/data/samplesheet/st/samples/1706409.xml | 212 - t/data/samplesheet/st/samples/1706410.xml | 212 - t/data/samplesheet/st/samples/1706411.xml | 212 - t/data/samplesheet/st/samples/1706412.xml | 212 - t/data/samplesheet/st/samples/1706413.xml | 212 - t/data/samplesheet/st/samples/1706414.xml | 212 - t/data/samplesheet/st/samples/1706415.xml | 212 - t/data/samplesheet/st/samples/1706416.xml | 212 - t/data/samplesheet/st/samples/1706417.xml | 212 - t/data/samplesheet/st/samples/1706418.xml | 212 - t/data/samplesheet/st/samples/1706419.xml | 212 - t/data/samplesheet/st/samples/1706420.xml | 212 - t/data/samplesheet/st/samples/1706421.xml | 212 - t/data/samplesheet/st/samples/1706422.xml | 212 - t/data/samplesheet/st/samples/1706423.xml | 212 - t/data/samplesheet/st/samples/1706424.xml | 212 - t/data/samplesheet/st/samples/1706425.xml | 212 - t/data/samplesheet/st/samples/1706426.xml | 212 - t/data/samplesheet/st/samples/1706427.xml | 212 - t/data/samplesheet/st/samples/1706428.xml | 212 - t/data/samplesheet/st/samples/1706429.xml | 212 - t/data/samplesheet/st/samples/1706430.xml | 212 - t/data/samplesheet/st/samples/1706431.xml | 212 - t/data/samplesheet/st/samples/1706432.xml | 212 - t/data/samplesheet/st/samples/1706433.xml | 212 - t/data/samplesheet/st/samples/1706434.xml | 212 - t/data/samplesheet/st/samples/1706435.xml | 212 - t/data/samplesheet/st/samples/1706436.xml | 212 - t/data/samplesheet/st/samples/1706437.xml | 212 - t/data/samplesheet/st/samples/1706438.xml | 212 - t/data/samplesheet/st/samples/1706439.xml | 212 - t/data/samplesheet/st/samples/1706440.xml | 212 - t/data/samplesheet/st/samples/1706441.xml | 212 - t/data/samplesheet/st/samples/1706442.xml | 212 - t/data/samplesheet/st/samples/1706443.xml | 212 - t/data/samplesheet/st/samples/1706444.xml | 212 - t/data/samplesheet/st/samples/1706445.xml | 212 - t/data/samplesheet/st/samples/1706446.xml | 212 - t/data/samplesheet/st/samples/1706447.xml | 212 - t/data/samplesheet/st/samples/1706448.xml | 212 - t/data/samplesheet/st/samples/1706449.xml | 212 - t/data/samplesheet/st/samples/1706450.xml | 212 - t/data/samplesheet/st/samples/1706451.xml | 212 - t/data/samplesheet/st/samples/1706452.xml | 212 - t/data/samplesheet/st/samples/1706453.xml | 212 - t/data/samplesheet/st/samples/1706454.xml | 212 - t/data/samplesheet/st/samples/1706455.xml | 212 - t/data/samplesheet/st/samples/1706456.xml | 212 - t/data/samplesheet/st/samples/1706457.xml | 212 - t/data/samplesheet/st/samples/1706458.xml | 212 - t/data/samplesheet/st/samples/1706459.xml | 212 - t/data/samplesheet/st/samples/1706460.xml | 212 - t/data/samplesheet/st/samples/1706461.xml | 212 - t/data/samplesheet/st/samples/1706462.xml | 212 - t/data/samplesheet/st/samples/1706463.xml | 212 - t/data/samplesheet/st/samples/1706464.xml | 212 - t/data/samplesheet/st/samples/1706465.xml | 212 - t/data/samplesheet/st/samples/1706466.xml | 212 - t/data/samplesheet/st/samples/1706467.xml | 212 - t/data/samplesheet/st/samples/1706468.xml | 212 - t/data/samplesheet/st/samples/1706469.xml | 212 - t/data/samplesheet/st/samples/1706470.xml | 212 - t/data/samplesheet/st/samples/1706471.xml | 212 - t/data/samplesheet/st/samples/1706472.xml | 212 - t/data/samplesheet/st/samples/1706473.xml | 212 - t/data/samplesheet/st/samples/1706474.xml | 212 - t/data/samplesheet/st/samples/1706475.xml | 212 - t/data/samplesheet/st/samples/1706476.xml | 212 - t/data/samplesheet/st/samples/1706477.xml | 212 - t/data/samplesheet/st/samples/1706478.xml | 212 - t/data/samplesheet/st/samples/1706479.xml | 212 - t/data/samplesheet/st/samples/1706480.xml | 212 - t/data/samplesheet/st/samples/1706481.xml | 212 - t/data/samplesheet/st/samples/1706482.xml | 212 - t/data/samplesheet/st/samples/1706483.xml | 212 - t/data/samplesheet/st/samples/1706484.xml | 212 - t/data/samplesheet/st/samples/1706485.xml | 212 - t/data/samplesheet/st/samples/1712041.xml | 212 - t/data/samplesheet/st/studies/1697.xml | 195 - t/data/samplesheet/st/studies/198.xml | 181 - t/data/samplesheet/st/studies/1980.xml | 161 - t/data/samplesheet/st/studies/2239.xml | 221 - t/data/samplesheet/st/studies/2501.xml | 187 - t/data/samplesheet/st/studies/2658.xml | 185 - t/data/samplesheet/st/studies/521.xml | 171 - t/data/samplesheet/st/studies/700.xml | 175 - 157 files changed, 17540 insertions(+), 32217 deletions(-) create mode 100644 t/data/fixtures_lims_wh_samplesheet/000-Sample.yml create mode 100644 t/data/fixtures_lims_wh_samplesheet/000-Study.yml create mode 100644 t/data/fixtures_lims_wh_samplesheet/100-IseqFlowcell.yml create mode 100644 t/data/fixtures_lims_wh_samplesheet/100-StudyUser.yml delete mode 100644 t/data/samplesheet/1control7libs_extended.csv create mode 100644 t/data/samplesheet/dual_index_default_new.csv create mode 100644 t/data/samplesheet/dual_index_extended_new.csv delete mode 100644 t/data/samplesheet/st/batches/1.xml delete mode 100644 t/data/samplesheet/st/batches/13994.xml delete mode 100644 t/data/samplesheet/st/batches/14505.xml delete mode 100644 t/data/samplesheet/st/batches/16537.xml delete mode 100755 t/data/samplesheet/st/batches/16538.xml delete mode 100644 t/data/samplesheet/st/batches/23798.xml delete mode 100644 t/data/samplesheet/st/projects/1238.xml delete mode 100644 t/data/samplesheet/st/projects/1366.xml delete mode 100644 t/data/samplesheet/st/projects/1422.xml delete mode 100644 t/data/samplesheet/st/projects/521.xml delete mode 100644 t/data/samplesheet/st/projects/678.xml delete mode 100644 t/data/samplesheet/st/projects/714.xml delete mode 100644 t/data/samplesheet/st/samples/1255141.xml delete mode 100644 t/data/samplesheet/st/samples/1289830.xml delete mode 100644 t/data/samplesheet/st/samples/1289832.xml delete mode 100644 t/data/samplesheet/st/samples/1289833.xml delete mode 100644 t/data/samplesheet/st/samples/1289834.xml delete mode 100644 t/data/samplesheet/st/samples/1289835.xml delete mode 100644 t/data/samplesheet/st/samples/1289836.xml delete mode 100644 t/data/samplesheet/st/samples/1289837.xml delete mode 100644 t/data/samplesheet/st/samples/1289838.xml delete mode 100644 t/data/samplesheet/st/samples/1289839.xml delete mode 100644 t/data/samplesheet/st/samples/1289840.xml delete mode 100644 t/data/samplesheet/st/samples/1289841.xml delete mode 100644 t/data/samplesheet/st/samples/1289842.xml delete mode 100644 t/data/samplesheet/st/samples/1289843.xml delete mode 100644 t/data/samplesheet/st/samples/1392234.xml delete mode 100644 t/data/samplesheet/st/samples/1392235.xml delete mode 100644 t/data/samplesheet/st/samples/1392236.xml delete mode 100644 t/data/samplesheet/st/samples/1392237.xml delete mode 100644 t/data/samplesheet/st/samples/1392238.xml delete mode 100644 t/data/samplesheet/st/samples/1660679.xml delete mode 100644 t/data/samplesheet/st/samples/1660680.xml delete mode 100644 t/data/samplesheet/st/samples/1694494.xml delete mode 100644 t/data/samplesheet/st/samples/1694495.xml delete mode 100644 t/data/samplesheet/st/samples/1694496.xml delete mode 100644 t/data/samplesheet/st/samples/1694497.xml delete mode 100644 t/data/samplesheet/st/samples/1694498.xml delete mode 100644 t/data/samplesheet/st/samples/1694499.xml delete mode 100644 t/data/samplesheet/st/samples/1706390.xml delete mode 100644 t/data/samplesheet/st/samples/1706391.xml delete mode 100644 t/data/samplesheet/st/samples/1706392.xml delete mode 100644 t/data/samplesheet/st/samples/1706393.xml delete mode 100644 t/data/samplesheet/st/samples/1706394.xml delete mode 100644 t/data/samplesheet/st/samples/1706395.xml delete mode 100644 t/data/samplesheet/st/samples/1706396.xml delete mode 100644 t/data/samplesheet/st/samples/1706397.xml delete mode 100644 t/data/samplesheet/st/samples/1706398.xml delete mode 100644 t/data/samplesheet/st/samples/1706399.xml delete mode 100644 t/data/samplesheet/st/samples/1706400.xml delete mode 100644 t/data/samplesheet/st/samples/1706401.xml delete mode 100644 t/data/samplesheet/st/samples/1706402.xml delete mode 100644 t/data/samplesheet/st/samples/1706403.xml delete mode 100644 t/data/samplesheet/st/samples/1706404.xml delete mode 100644 t/data/samplesheet/st/samples/1706405.xml delete mode 100644 t/data/samplesheet/st/samples/1706406.xml delete mode 100644 t/data/samplesheet/st/samples/1706407.xml delete mode 100644 t/data/samplesheet/st/samples/1706408.xml delete mode 100644 t/data/samplesheet/st/samples/1706409.xml delete mode 100644 t/data/samplesheet/st/samples/1706410.xml delete mode 100644 t/data/samplesheet/st/samples/1706411.xml delete mode 100644 t/data/samplesheet/st/samples/1706412.xml delete mode 100644 t/data/samplesheet/st/samples/1706413.xml delete mode 100644 t/data/samplesheet/st/samples/1706414.xml delete mode 100644 t/data/samplesheet/st/samples/1706415.xml delete mode 100644 t/data/samplesheet/st/samples/1706416.xml delete mode 100644 t/data/samplesheet/st/samples/1706417.xml delete mode 100644 t/data/samplesheet/st/samples/1706418.xml delete mode 100644 t/data/samplesheet/st/samples/1706419.xml delete mode 100644 t/data/samplesheet/st/samples/1706420.xml delete mode 100644 t/data/samplesheet/st/samples/1706421.xml delete mode 100644 t/data/samplesheet/st/samples/1706422.xml delete mode 100644 t/data/samplesheet/st/samples/1706423.xml delete mode 100644 t/data/samplesheet/st/samples/1706424.xml delete mode 100644 t/data/samplesheet/st/samples/1706425.xml delete mode 100644 t/data/samplesheet/st/samples/1706426.xml delete mode 100644 t/data/samplesheet/st/samples/1706427.xml delete mode 100644 t/data/samplesheet/st/samples/1706428.xml delete mode 100644 t/data/samplesheet/st/samples/1706429.xml delete mode 100644 t/data/samplesheet/st/samples/1706430.xml delete mode 100644 t/data/samplesheet/st/samples/1706431.xml delete mode 100644 t/data/samplesheet/st/samples/1706432.xml delete mode 100644 t/data/samplesheet/st/samples/1706433.xml delete mode 100644 t/data/samplesheet/st/samples/1706434.xml delete mode 100644 t/data/samplesheet/st/samples/1706435.xml delete mode 100644 t/data/samplesheet/st/samples/1706436.xml delete mode 100644 t/data/samplesheet/st/samples/1706437.xml delete mode 100644 t/data/samplesheet/st/samples/1706438.xml delete mode 100644 t/data/samplesheet/st/samples/1706439.xml delete mode 100644 t/data/samplesheet/st/samples/1706440.xml delete mode 100644 t/data/samplesheet/st/samples/1706441.xml delete mode 100644 t/data/samplesheet/st/samples/1706442.xml delete mode 100644 t/data/samplesheet/st/samples/1706443.xml delete mode 100644 t/data/samplesheet/st/samples/1706444.xml delete mode 100644 t/data/samplesheet/st/samples/1706445.xml delete mode 100644 t/data/samplesheet/st/samples/1706446.xml delete mode 100644 t/data/samplesheet/st/samples/1706447.xml delete mode 100644 t/data/samplesheet/st/samples/1706448.xml delete mode 100644 t/data/samplesheet/st/samples/1706449.xml delete mode 100644 t/data/samplesheet/st/samples/1706450.xml delete mode 100644 t/data/samplesheet/st/samples/1706451.xml delete mode 100644 t/data/samplesheet/st/samples/1706452.xml delete mode 100644 t/data/samplesheet/st/samples/1706453.xml delete mode 100644 t/data/samplesheet/st/samples/1706454.xml delete mode 100644 t/data/samplesheet/st/samples/1706455.xml delete mode 100644 t/data/samplesheet/st/samples/1706456.xml delete mode 100644 t/data/samplesheet/st/samples/1706457.xml delete mode 100644 t/data/samplesheet/st/samples/1706458.xml delete mode 100644 t/data/samplesheet/st/samples/1706459.xml delete mode 100644 t/data/samplesheet/st/samples/1706460.xml delete mode 100644 t/data/samplesheet/st/samples/1706461.xml delete mode 100644 t/data/samplesheet/st/samples/1706462.xml delete mode 100644 t/data/samplesheet/st/samples/1706463.xml delete mode 100644 t/data/samplesheet/st/samples/1706464.xml delete mode 100644 t/data/samplesheet/st/samples/1706465.xml delete mode 100644 t/data/samplesheet/st/samples/1706466.xml delete mode 100644 t/data/samplesheet/st/samples/1706467.xml delete mode 100644 t/data/samplesheet/st/samples/1706468.xml delete mode 100644 t/data/samplesheet/st/samples/1706469.xml delete mode 100644 t/data/samplesheet/st/samples/1706470.xml delete mode 100644 t/data/samplesheet/st/samples/1706471.xml delete mode 100644 t/data/samplesheet/st/samples/1706472.xml delete mode 100644 t/data/samplesheet/st/samples/1706473.xml delete mode 100644 t/data/samplesheet/st/samples/1706474.xml delete mode 100644 t/data/samplesheet/st/samples/1706475.xml delete mode 100644 t/data/samplesheet/st/samples/1706476.xml delete mode 100644 t/data/samplesheet/st/samples/1706477.xml delete mode 100644 t/data/samplesheet/st/samples/1706478.xml delete mode 100644 t/data/samplesheet/st/samples/1706479.xml delete mode 100644 t/data/samplesheet/st/samples/1706480.xml delete mode 100644 t/data/samplesheet/st/samples/1706481.xml delete mode 100644 t/data/samplesheet/st/samples/1706482.xml delete mode 100644 t/data/samplesheet/st/samples/1706483.xml delete mode 100644 t/data/samplesheet/st/samples/1706484.xml delete mode 100644 t/data/samplesheet/st/samples/1706485.xml delete mode 100644 t/data/samplesheet/st/samples/1712041.xml delete mode 100644 t/data/samplesheet/st/studies/1697.xml delete mode 100644 t/data/samplesheet/st/studies/198.xml delete mode 100644 t/data/samplesheet/st/studies/1980.xml delete mode 100644 t/data/samplesheet/st/studies/2239.xml delete mode 100644 t/data/samplesheet/st/studies/2501.xml delete mode 100644 t/data/samplesheet/st/studies/2658.xml delete mode 100644 t/data/samplesheet/st/studies/521.xml delete mode 100644 t/data/samplesheet/st/studies/700.xml diff --git a/MANIFEST b/MANIFEST index 695e310e..6990c596 100644 --- a/MANIFEST +++ b/MANIFEST @@ -500,6 +500,10 @@ t/data/fixtures_stlims_wh/000-Study.yml t/data/fixtures_stlims_wh/100-IseqFlowcell.yml t/data/fixtures_stlims_wh/100-StudyUser.yml t/data/fixtures_stlims_wh/200-IseqProductMetric.yml +t/data/fixtures_lims_wh_samplesheet/000-Sample.yml +t/data/fixtures_lims_wh_samplesheet/000-Study.yml +t/data/fixtures_lims_wh_samplesheet/100-StudyUser.yml +t/data/fixtures_lims_wh_samplesheet/100-IseqFlowcell.yml t/data/gaii/staging/IL3/incoming/100622_IL3_01234/this_run_is_not_complete_yet t/data/gaii/staging/IL5/incoming/not_a_dir t/data/gaii/staging/IL999/incoming/100622_IL3_01234/Recipe_GA2-PEM_2x76Cycle_v7.7.xml @@ -743,161 +747,18 @@ t/data/run_params/RunParameters.novaseq.xp.lite.xml t/data/samplesheet/samplesheet_7753.csv t/data/samplesheet/samplesheet_27483.csv t/data/samplesheet/samplesheet_33990.csv -t/data/samplesheet/1control7libs_extended.csv t/data/samplesheet/4pool4libs_extended.csv t/data/samplesheet/6946_extended.csv t/data/samplesheet/7007_extended.csv t/data/samplesheet/8pools_extended.csv t/data/samplesheet/dual_index_extended.csv +t/data/samplesheet/dual_index_default_new.csv +t/data/samplesheet/dual_index_extended_new.csv t/data/samplesheet/miseq_default.csv t/data/samplesheet/miseq_default_dual_index.csv t/data/samplesheet/miseq_extended.csv t/data/samplesheet/multilane.csv t/data/samplesheet/novaseq_multirun.csv -t/data/samplesheet/st/batches/1.xml -t/data/samplesheet/st/batches/13994.xml -t/data/samplesheet/st/batches/14505.xml -t/data/samplesheet/st/batches/16537.xml -t/data/samplesheet/st/batches/16538.xml -t/data/samplesheet/st/batches/23798.xml -t/data/samplesheet/st/projects/1238.xml -t/data/samplesheet/st/projects/1366.xml -t/data/samplesheet/st/projects/1422.xml -t/data/samplesheet/st/projects/521.xml -t/data/samplesheet/st/projects/678.xml -t/data/samplesheet/st/projects/714.xml -t/data/samplesheet/st/samples/1255141.xml -t/data/samplesheet/st/samples/1289830.xml -t/data/samplesheet/st/samples/1289832.xml -t/data/samplesheet/st/samples/1289833.xml -t/data/samplesheet/st/samples/1289834.xml -t/data/samplesheet/st/samples/1289835.xml -t/data/samplesheet/st/samples/1289836.xml -t/data/samplesheet/st/samples/1289837.xml -t/data/samplesheet/st/samples/1289838.xml -t/data/samplesheet/st/samples/1289839.xml -t/data/samplesheet/st/samples/1289840.xml -t/data/samplesheet/st/samples/1289841.xml -t/data/samplesheet/st/samples/1289842.xml -t/data/samplesheet/st/samples/1289843.xml -t/data/samplesheet/st/samples/1392234.xml -t/data/samplesheet/st/samples/1392235.xml -t/data/samplesheet/st/samples/1392236.xml -t/data/samplesheet/st/samples/1392237.xml -t/data/samplesheet/st/samples/1392238.xml -t/data/samplesheet/st/samples/1660679.xml -t/data/samplesheet/st/samples/1660680.xml -t/data/samplesheet/st/samples/1694494.xml -t/data/samplesheet/st/samples/1694495.xml -t/data/samplesheet/st/samples/1694496.xml -t/data/samplesheet/st/samples/1694497.xml -t/data/samplesheet/st/samples/1694498.xml -t/data/samplesheet/st/samples/1694499.xml -t/data/samplesheet/st/samples/1706390.xml -t/data/samplesheet/st/samples/1706391.xml -t/data/samplesheet/st/samples/1706392.xml -t/data/samplesheet/st/samples/1706393.xml -t/data/samplesheet/st/samples/1706394.xml -t/data/samplesheet/st/samples/1706395.xml -t/data/samplesheet/st/samples/1706396.xml -t/data/samplesheet/st/samples/1706397.xml -t/data/samplesheet/st/samples/1706398.xml -t/data/samplesheet/st/samples/1706399.xml -t/data/samplesheet/st/samples/1706400.xml -t/data/samplesheet/st/samples/1706401.xml -t/data/samplesheet/st/samples/1706402.xml -t/data/samplesheet/st/samples/1706403.xml -t/data/samplesheet/st/samples/1706404.xml -t/data/samplesheet/st/samples/1706405.xml -t/data/samplesheet/st/samples/1706406.xml -t/data/samplesheet/st/samples/1706407.xml -t/data/samplesheet/st/samples/1706408.xml -t/data/samplesheet/st/samples/1706409.xml -t/data/samplesheet/st/samples/1706410.xml -t/data/samplesheet/st/samples/1706411.xml -t/data/samplesheet/st/samples/1706412.xml -t/data/samplesheet/st/samples/1706413.xml -t/data/samplesheet/st/samples/1706414.xml -t/data/samplesheet/st/samples/1706415.xml -t/data/samplesheet/st/samples/1706416.xml -t/data/samplesheet/st/samples/1706417.xml -t/data/samplesheet/st/samples/1706418.xml -t/data/samplesheet/st/samples/1706419.xml -t/data/samplesheet/st/samples/1706420.xml -t/data/samplesheet/st/samples/1706421.xml -t/data/samplesheet/st/samples/1706422.xml -t/data/samplesheet/st/samples/1706423.xml -t/data/samplesheet/st/samples/1706424.xml -t/data/samplesheet/st/samples/1706425.xml -t/data/samplesheet/st/samples/1706426.xml -t/data/samplesheet/st/samples/1706427.xml -t/data/samplesheet/st/samples/1706428.xml -t/data/samplesheet/st/samples/1706429.xml -t/data/samplesheet/st/samples/1706430.xml -t/data/samplesheet/st/samples/1706431.xml -t/data/samplesheet/st/samples/1706432.xml -t/data/samplesheet/st/samples/1706433.xml -t/data/samplesheet/st/samples/1706434.xml -t/data/samplesheet/st/samples/1706435.xml -t/data/samplesheet/st/samples/1706436.xml -t/data/samplesheet/st/samples/1706437.xml -t/data/samplesheet/st/samples/1706438.xml -t/data/samplesheet/st/samples/1706439.xml -t/data/samplesheet/st/samples/1706440.xml -t/data/samplesheet/st/samples/1706441.xml -t/data/samplesheet/st/samples/1706442.xml -t/data/samplesheet/st/samples/1706443.xml -t/data/samplesheet/st/samples/1706444.xml -t/data/samplesheet/st/samples/1706445.xml -t/data/samplesheet/st/samples/1706446.xml -t/data/samplesheet/st/samples/1706447.xml -t/data/samplesheet/st/samples/1706448.xml -t/data/samplesheet/st/samples/1706449.xml -t/data/samplesheet/st/samples/1706450.xml -t/data/samplesheet/st/samples/1706451.xml -t/data/samplesheet/st/samples/1706452.xml -t/data/samplesheet/st/samples/1706453.xml -t/data/samplesheet/st/samples/1706454.xml -t/data/samplesheet/st/samples/1706455.xml -t/data/samplesheet/st/samples/1706456.xml -t/data/samplesheet/st/samples/1706457.xml -t/data/samplesheet/st/samples/1706458.xml -t/data/samplesheet/st/samples/1706459.xml -t/data/samplesheet/st/samples/1706460.xml -t/data/samplesheet/st/samples/1706461.xml -t/data/samplesheet/st/samples/1706462.xml -t/data/samplesheet/st/samples/1706463.xml -t/data/samplesheet/st/samples/1706464.xml -t/data/samplesheet/st/samples/1706465.xml -t/data/samplesheet/st/samples/1706466.xml -t/data/samplesheet/st/samples/1706467.xml -t/data/samplesheet/st/samples/1706468.xml -t/data/samplesheet/st/samples/1706469.xml -t/data/samplesheet/st/samples/1706470.xml -t/data/samplesheet/st/samples/1706471.xml -t/data/samplesheet/st/samples/1706472.xml -t/data/samplesheet/st/samples/1706473.xml -t/data/samplesheet/st/samples/1706474.xml -t/data/samplesheet/st/samples/1706475.xml -t/data/samplesheet/st/samples/1706476.xml -t/data/samplesheet/st/samples/1706477.xml -t/data/samplesheet/st/samples/1706478.xml -t/data/samplesheet/st/samples/1706479.xml -t/data/samplesheet/st/samples/1706480.xml -t/data/samplesheet/st/samples/1706481.xml -t/data/samplesheet/st/samples/1706482.xml -t/data/samplesheet/st/samples/1706483.xml -t/data/samplesheet/st/samples/1706484.xml -t/data/samplesheet/st/samples/1706485.xml -t/data/samplesheet/st/samples/1712041.xml -t/data/samplesheet/st/studies/1697.xml -t/data/samplesheet/st/studies/198.xml -t/data/samplesheet/st/studies/1980.xml -t/data/samplesheet/st/studies/2239.xml -t/data/samplesheet/st/studies/2501.xml -t/data/samplesheet/st/studies/2658.xml -t/data/samplesheet/st/studies/521.xml -t/data/samplesheet/st/studies/700.xml t/data/st_api_lims_new/st/assets/3033734.xml t/data/st_api_lims_new/st/assets/3111688.xml t/data/st_api_lims_new/st/batches/12141.xml diff --git a/lib/npg/samplesheet.pm b/lib/npg/samplesheet.pm index 4f7d626c..e80fab86 100755 --- a/lib/npg/samplesheet.pm +++ b/lib/npg/samplesheet.pm @@ -284,11 +284,11 @@ sub _build__limsreflist { foreach my $attr (qw/library_id sample_publishable_name/) { my $value = _csv_compatible_value($tmpl->$attr); if (!$value) { - croak sprintf '%s is not available for position %i %s', + carp sprintf '%s is not available for position %i %s', $attr, $tmpl->position, defined $tmpl->tag_index ? 'tag index ' . $tmpl->tag_index : q[]; } - if ($self->mkfastq) { + if (!$value || $self->mkfastq) { # when making a samplesheet for mkfastq, replace value by run_position $value = $self->id_run . q[_] . $tmpl->position; if($self->_index_read) { diff --git a/t/47-samplesheet.t b/t/47-samplesheet.t index 4b88dea3..d27e1f7f 100644 --- a/t/47-samplesheet.t +++ b/t/47-samplesheet.t @@ -1,6 +1,6 @@ use strict; use warnings; -use Test::More tests => 13; +use Test::More tests => 12; use Test::LongString; use Test::Exception; use File::Slurp; @@ -19,35 +19,14 @@ my $schema = t::dbic_util->new->test_schema(); my $class = Moose::Meta::Class->create_anon_class(roles=>[qw/npg_testing::db/]); my $mlwh_schema = $class->new_object({})->create_test_db( - q[WTSI::DNAP::Warehouse::Schema], q[t/data/fixtures_lims_wh] + q[WTSI::DNAP::Warehouse::Schema], q[t/data/fixtures_lims_wh_samplesheet] ); local $ENV{NPG_WEBSERVICE_CACHE_DIR} = q(t/data/samplesheet); my $dir = tempdir( CLEANUP => 1 ); -subtest 'object creation' => sub { - plan tests => 8; - - my $result = q(); - dies_ok { npg::samplesheet->new( lims_driver_type=>'xml', repository=>$dir, output=>\$result)->process } - 'sample sheet process fails when neither run object nor id_run given'; - - my $ss; - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007); } 'sample sheet object - no output provided'; - cmp_ok($ss->output, 'eq', '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/MS0001309-300.csv', 'default output location (with zeroes trimmed appropriately)'); - is($ss->lims->[0]->driver_type, 'xml', 'xml driver is used'); - - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946); } 'sample sheet object - no output provided'; - cmp_ok($ss->output, 'eq', '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/000000000-A0616.csv', 'default output location'); - - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007); } 'sample sheet object - no output provided'; - my $orig_flowcell_id = $ss->run->flowcell_id; - $ss->run->flowcell_id(q(MS2000132-500V2)); - cmp_ok($ss->output, 'eq', '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/MS2000132-500V2.csv', 'default output location copes with V2 MiSeq cartirdges/reagent kits'); -}; - -subtest 'error on an unknown driver types' => sub { +subtest 'error on an unknown driver type' => sub { plan tests => 1; throws_ok { @@ -55,6 +34,7 @@ subtest 'error on an unknown driver types' => sub { lims_driver_type => 'foo', repository => $dir, npg_tracking_schema => $schema, + mlwh_schema => $mlwh_schema, id_run => 7007)->lims() } qr/Lazy-build for driver type foo is not inplemented/, 'error with the driver type for which LIMS objects cannot be built'; @@ -63,10 +43,6 @@ subtest 'error on an unknown driver types' => sub { subtest 'simple tests for the default driver' => sub { plan tests => 2; - my $run_row = $schema->resultset('Run')->find(7007); - my $current_batch_id = $run_row->batch_id; - $run_row->update({batch_id => 57543}); - my $ss = npg::samplesheet->new( repository => $dir, npg_tracking_schema => $schema, @@ -76,8 +52,37 @@ subtest 'simple tests for the default driver' => sub { is ($ss->lims_driver_type, 'ml_warehouse', 'correct default driver type'); my $lims = $ss->lims(); is (@{$lims}, 1, 'LIMS data for 1 lane is built'); +}; - $run_row->update({batch_id => $current_batch_id}); +subtest 'object creation' => sub { + plan tests => 7; + + my $result = q(); + dies_ok { npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, output=>\$result)->process } + 'samplesheet process fails when neither run object nor id_run given'; + + my $ss; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007); } + 'samplesheet object - no output provided'; + cmp_ok($ss->output, 'eq', + '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/MS0001309-300.csv', + 'default output location (with zeroes trimmed appropriately)'); + + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946); } + 'samplesheet object - no output provided'; + cmp_ok($ss->output, 'eq', + '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/000000000-A0616.csv', + 'default output location'); + + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007); } 'samplesheet object - no output provided'; + my $orig_flowcell_id = $ss->run->flowcell_id; + $ss->run->flowcell_id(q(MS2000132-500V2)); + cmp_ok($ss->output, 'eq', + '/nfs/sf49/ILorHSorMS_sf49/samplesheets/wibble/MS2000132-500V2.csv', + 'default output location copes with V2 MiSeq cartirdges/reagent kits'); }; subtest 'values conversion' => sub { @@ -125,20 +130,24 @@ Chemistry,Default,, ,,, [Data],,, Sample_ID,Sample_Name,GenomeFolder, -3789277,Strongyloides ratti,, +3789277,ERS092590,, RESULT_7007 $expected_result_7007 =~ s/\n/\r\n/smg; my $ss; my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007, output=>\$result); } 'sample sheet object for unplexed paired run'; - lives_ok { $ss->process(); } ' sample sheet generated'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>7007, output=>\$result); } + 'samplesheet object for unplexed paired run'; + lives_ok { $ss->process(); } ' samplesheet generated'; is_string($result, $expected_result_7007); my $run = $schema->resultset(q(Run))->find(7007); $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, run=>$run, output=>\$result); } 'sample sheet object from run object - no id_run given'; - lives_ok { $ss->process(); } ' sample sheet generated'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, run=>$run, output=>\$result); } + 'samplesheet object from run object - no id_run given'; + lives_ok { $ss->process(); } ' samplesheet generated'; is_string($result, $expected_result_7007); }; @@ -147,7 +156,9 @@ subtest 'default samplesheet for a plexed paired run' => sub { my $ss; my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, output=>\$result); } 'samplesheet object for plexed paired run'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, + id_run=>6946, output=>\$result); } 'samplesheet object for plexed paired run'; my $expected_result = << 'RESULT_6946'; [Header],,,, Investigator Name,mq1,,, @@ -181,7 +192,7 @@ Sample_ID,Sample_Name,GenomeFolder,Index, 3789289,Homo sapiens,,CTTGTACT, RESULT_6946 $expected_result =~ s/\n/\r\n/smg; - lives_ok { $ss->process(); } ' sample sheet generated'; + lives_ok { $ss->process(); } 'samplesheet generated'; is_string($result, $expected_result); }; @@ -190,7 +201,9 @@ subtest 'default samplesheet for a plexed paired run with reference fallback' => my $ss; my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7825, output=>\$result); } 'sample sheet object for plexed paired run'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema => $mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>7825, + output=>\$result); } 'samplesheet object for plexed paired run'; my $expected_result = << 'RESULT_7825'; [Header],,,, Investigator Name,nh4,,, @@ -217,141 +230,84 @@ Sample_ID,Sample_Name,GenomeFolder,Index, 4894526,PfIT_SOLiD5500_5kb,,TAGCTTGTAT, RESULT_7825 $expected_result =~ s/\n/\r\n/smg; - lives_ok { $ss->process(); } ' sample sheet generated'; - is_string($result, $expected_result, 'PhiX used as fall back reference'); + lives_ok { $ss->process(); } 'samplesheet generated'; + is_string($result, $expected_result, 'PhiX used as fall-back reference'); }; -subtest 'default samplesheet, mkfastq option enabled' => sub { - plan tests => 3; +subtest 'default and mkfastq samplesheets for dual index' => sub { + plan tests => 10; - # with the mkfastq option we get an extra leading column, Lane - my $ss; + my $run_6946 = $schema->resultset('Run')->find(6946); + my $batch_id = $run_6946->batch_id; + $schema->resultset('Run')->find(6946)->update({batch_id => 76873}); my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7826, mkfastq => 1, output=>\$result); } - 'sample sheet object mkfastq'; - my $expected_result = << 'RESULT_mkfastq'; -[Header],,,,, -Investigator Name,nh4,,,, -Project Name,Mate Pair R%26D,,,, -Experiment Name,7826,,,, -Date,2012-04-03T16:39:48,,,, -Workflow,GenerateFASTQ,,,, -Chemistry,Amplicon,,,, -,,,,, -[Reads],,,,, -75,,,,, -8,,,,, -,,,,, -[Settings],,,,, -,,,,, -[Manifests],,,,, -,,,,, -[Data],,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2, -1,7826_1_ATCACGTTATAAAAAA,7826_1_ATCACGTTATAAAAAA,,ATCACGTT,ATAAAAAA, -1,7826_1_CGATGTTTATTTTTTT,7826_1_CGATGTTTATTTTTTT,,CGATGTTT,ATTTTTTT, -1,7826_1_ACTTGATGATCCCCCC,7826_1_ACTTGATGATCCCCCC,,ACTTGATG,ATCCCCCC, -1,7826_1_GATCAGCGATGGGGGG,7826_1_GATCAGCGATGGGGGG,,GATCAGCG,ATGGGGGG, -1,7826_1_TAGCTTGTATACACGT,7826_1_TAGCTTGTATACACGT,,TAGCTTGT,ATACACGT, -RESULT_mkfastq - $expected_result =~ s/\n/\r\n/smg; - lives_ok { $ss->process(); } ' sample sheet generated'; - is_string($result, $expected_result, 'mkfastq created'); -}; - -subtest 'default samplesheet for dual index' => sub { - plan tests => 3; - my $ss; - my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>7826, output=>\$result); } 'sample sheet object for dual index'; - my $expected_result = << 'RESULT_7826'; -[Header],,,, -Investigator Name,nh4,,, -Project Name,Mate Pair R%26D,,, -Experiment Name,7826,,, -Date,2012-04-03T16:39:48,,, -Workflow,GenerateFASTQ,,, -Chemistry,Amplicon,,, -,,,, -[Reads],,,, -75,,,, -8,,,, -,,,, -[Settings],,,, -,,,, -[Manifests],,,, -,,,, -[Data],,,, -Sample_ID,Sample_Name,GenomeFolder,Index,Index2, -4894529,Mouse_test_3kb,,ATCACGTT,ATAAAAAA, -4894528,Tetse_3kb,,CGATGTTT,ATTTTTTT, -4894527,PfIT_454_5kb,,ACTTGATG,ATCCCCCC, -4894525,PfIT_Sanger_5kb,,GATCAGCG,ATGGGGGG, -4894526,PfIT_SOLiD5500_5kb,,TAGCTTGT,ATACACGT, -RESULT_7826 - $expected_result =~ s/\n/\r\n/smg; - lives_ok { $ss->process(); } ' sample sheet generated'; - is_string($result, $expected_result, 'Dual indexes created'); + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, output=>\$result) } + 'default samplesheet object for a dual index run'; + ok($ss->_dual_index, 'dual index from two indexes in LIMs'); + lives_ok { $ss->process(); } 'samplesheet generated'; + is_string($result, read_file('t/data/samplesheet/dual_index_default_new.csv')); + + $result = q(); + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, + mkfastq => 1, output=>\$result) } 'samplesheet object mkfastq'; + lives_ok { $ss->process(); } 'samplesheet generated'; + # With the mkfastq option we get an extra leading column, Lane. + my @lines = map { $_ =~ s/\s\Z//g; $_ } grep { $_ =~ /\A1,/} split qq[\n], $result; + is (scalar @lines, 32, '32 sample lines'); + is ($lines[0], + q[1,6946_1_CGTGACACTTATTGCG,6946_1_CGTGACACTTATTGCG,,CGTGACAC,TTATTGCG,]); + is ($lines[1], + q[1,6946_1_ACTTAGAGCTCCATAA,6946_1_ACTTAGAGCTCCATAA,,ACTTAGAG,CTCCATAA,]); + is ($lines[31], + q[1,6946_1_GTAAGATGAAAGGCTG,6946_1_GTAAGATGAAAGGCTG,,GTAAGATG,AAAGGCTG,]); + + $schema->resultset('Run')->find(6946)->update({batch_id => $batch_id}); }; subtest 'extended samplesheets' => sub { - plan tests => 23; + plan tests => 16; my $ss; my $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, extend => 1, id_run=>7007, output=>\$result); } 'extended sample sheet object for unplexed paired run'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, extend => 1, + id_run=>7007, output=>\$result); } + 'extended samplesheet object for unplexed paired run'; ok(!$ss->_dual_index, 'no dual index'); - lives_ok { $ss->process(); } ' sample sheet generated'; + lives_ok { $ss->process(); } 'samplesheet generated'; is_string($result, read_file('t/data/samplesheet/7007_extended.csv')); $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, extend => 1, output=>\$result); } 'extended sample sheet object for plexed paired run'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, + extend => 1, output=>\$result); } + 'extended samplesheet object for plexed paired run'; ok(!$ss->_dual_index, 'no dual index'); - lives_ok { $ss->process(); } ' sample sheet generated'; + lives_ok { $ss->process(); } 'samplesheet generated'; is_string($result, read_file('t/data/samplesheet/6946_extended.csv')); - local $ENV{NPG_WEBSERVICE_CACHE_DIR} = q[t/data/test45]; - # assign batch_id for run 3905 - one control lane and 7 libraries - $schema->resultset('Run')->find(6946)->update({batch_id => 4775}); - - $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, extend => 1, output=>\$result); } - 'extended sample sheet object for unplexed paired 8 lane run with a control lane'; - lives_ok { $ss->process(); } 'sample sheet generated'; - is_string($result, read_file('t/data/samplesheet/1control7libs_extended.csv')); - - local $ENV{NPG_WEBSERVICE_CACHE_DIR} = q[t/data/test45]; - # assign batch_id for run 7690 - 8 pools - $schema->resultset('Run')->find(6946)->update({batch_id => 16249}); - - $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, extend => 1, output=>\$result); } - 'extended sample sheet object for plexed paired 8 lane run'; - ok(!$ss->_dual_index, 'no dual index'); - lives_ok { $ss->process(); } 'sample sheet generated'; - is_string($result, read_file('t/data/samplesheet/8pools_extended.csv')); - - local $ENV{NPG_WEBSERVICE_CACHE_DIR} = q[t/data/samplesheet]; - # assign batch_id for run 11114 - 4 pools 4 libs $schema->resultset('Run')->find(6946)->update({batch_id => 23798}); - $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, extend => 1, output=>\$result); } - 'extended sample sheet object for plexed paired run with both pool and library lanes'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, + extend => 1, output=>\$result); } + 'extended samplesheet object for a dual index recorded as a single index'; ok($ss->_dual_index, 'dual index from a 16 char first index'); - lives_ok { $ss->process(); } 'sample sheet generated'; + lives_ok { $ss->process(); } 'samplesheet generated'; is_string($result, read_file('t/data/samplesheet/4pool4libs_extended.csv')); - local $ENV{NPG_WEBSERVICE_CACHE_DIR} = q[t/data/samplesheet]; - $schema->resultset('Run')->find(6946)->update({batch_id => 1,}); - + $schema->resultset('Run')->find(6946)->update({batch_id => 76873}); $result = q(); - lives_ok { $ss = npg::samplesheet->new(lims_driver_type=>'xml', repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, extend => 1, output=>\$result); } - 'extended sample sheet object for plexed paired run with both pool and library lanes'; + lives_ok { $ss = npg::samplesheet->new(mlwh_schema=>$mlwh_schema, + repository=>$dir, npg_tracking_schema=>$schema, id_run=>6946, + extend => 1, output=>\$result); } + 'extended samplesheet object for a dal index run'; ok($ss->_dual_index, 'dual index from two indexes in LIMs'); - lives_ok { $ss->process(); } 'sample sheet generated'; - is_string($result, read_file('t/data/samplesheet/dual_index_extended.csv')); + lives_ok { $ss->process(); } 'samplesheet generated'; + is_string($result, read_file('t/data/samplesheet/dual_index_extended_new.csv')); }; subtest 'samplesheets for data for multiple runs' => sub { diff --git a/t/data/fixtures_lims_wh_samplesheet/000-Sample.yml b/t/data/fixtures_lims_wh_samplesheet/000-Sample.yml new file mode 100644 index 00000000..95a25c9e --- /dev/null +++ b/t/data/fixtures_lims_wh_samplesheet/000-Sample.yml @@ -0,0 +1,9768 @@ +--- +- accession_number: ERS092590 + age: ~ + cell_type: ~ + cohort: ~ + common_name: Strongyloides ratti + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 13:46:23 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: ~ + developmental_stage: infective larvae L3 + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: Mixed + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289830 + id_sample_tmp: 1271608 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: SriL3_66K_212889 + organism: Strongyloides ratti + organism_part: whole + phenotype: ~ + public_name: Strongyloides ratti + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Strongyloides_ratti (20100601) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: ED321 + subject: ~ + supplier_name: ~ + taxon_id: 34506 + time_point: ~ + treatment: ~ + uuid_sample_lims: 673165ec-f8c6-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Salmonella pullorum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:31 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289832 + id_sample_tmp: 1271610 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: sp200shear + organism: Salmonella pullorum + organism_part: ~ + phenotype: ~ + public_name: Salmonella pullorum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Salmonella_pullorum (449_87) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 449_87 + subject: ~ + supplier_name: ~ + taxon_id: 590 + time_point: ~ + treatment: ~ + uuid_sample_lims: b51b4966-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Bordetella Pertussis + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:32 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High GC + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289833 + id_sample_tmp: 1271611 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: bp200shear + organism: Bordetella Pertussis + organism_part: ~ + phenotype: ~ + public_name: Bordetella Pertussis + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Bordetella_pertussis (ST24) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: Bpst24 + subject: ~ + supplier_name: ~ + taxon_id: 520 + time_point: ~ + treatment: ~ + uuid_sample_lims: b5760fb8-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Plasmodium Falciparum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:32 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289834 + id_sample_tmp: 1271612 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: 3D7200shear + organism: Plasmodium Falciparum + organism_part: ~ + phenotype: ~ + public_name: Plasmodium Falciparum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Plasmodium_falciparum (3D7) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 3D7 + subject: ~ + supplier_name: ~ + taxon_id: 5820 + time_point: ~ + treatment: ~ + uuid_sample_lims: b589b0cc-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Human + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:32 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289835 + id_sample_tmp: 1271613 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: human200shear + organism: Homo sapiens + organism_part: ~ + phenotype: ~ + public_name: Homo sapiens + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Homo_sapiens (GRCh37_53) DO_NOT_USE + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: colo_829 + subject: ~ + supplier_name: ~ + taxon_id: 9606 + time_point: ~ + treatment: ~ + uuid_sample_lims: b5e1b402-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Salmonella pullorum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:33 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289836 + id_sample_tmp: 1271614 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: sp300shear + organism: Salmonella pullorum + organism_part: ~ + phenotype: ~ + public_name: Salmonella pullorum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Salmonella_pullorum (449_87) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 449_87 + subject: ~ + supplier_name: ~ + taxon_id: 590 + time_point: ~ + treatment: ~ + uuid_sample_lims: b5f4757e-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Bordetella Pertussis + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:33 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High GC + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289837 + id_sample_tmp: 1271615 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: bp300shear + organism: Bordetella Pertussis + organism_part: ~ + phenotype: ~ + public_name: Bordetella Pertussis + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Bordetella_pertussis (ST24) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: Bpst24 + subject: ~ + supplier_name: ~ + taxon_id: 520 + time_point: ~ + treatment: ~ + uuid_sample_lims: b6064740-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Plasmodium Falciparum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:33 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289838 + id_sample_tmp: 1271616 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: 3D7300shear + organism: Plasmodium Falciparum + organism_part: ~ + phenotype: ~ + public_name: Plasmodium Falciparum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Plasmodium_falciparum (3D7) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 3D7 + subject: ~ + supplier_name: ~ + taxon_id: 5820 + time_point: ~ + treatment: ~ + uuid_sample_lims: b65db606-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Human + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:33 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289839 + id_sample_tmp: 1271617 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: human300shear + organism: Homo sapiens + organism_part: ~ + phenotype: ~ + public_name: Homo sapiens + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Homo_sapiens (GRCh37_53) DO_NOT_USE + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: colo_829 + subject: ~ + supplier_name: ~ + taxon_id: 9606 + time_point: ~ + treatment: ~ + uuid_sample_lims: b6790546-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Salmonella pullorum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:34 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289840 + id_sample_tmp: 1271618 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: sp400shear + organism: Salmonella pullorum + organism_part: ~ + phenotype: ~ + public_name: Salmonella pullorum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Salmonella_pullorum (449_87) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 449_87 + subject: ~ + supplier_name: ~ + taxon_id: 590 + time_point: ~ + treatment: ~ + uuid_sample_lims: b694245c-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Bordetella Pertussis + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:34 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High GC + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289841 + id_sample_tmp: 1271619 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: bp400shear + organism: Bordetella Pertussis + organism_part: ~ + phenotype: ~ + public_name: Bordetella Pertussis + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Bordetella_pertussis (ST24) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: Bpst24 + subject: ~ + supplier_name: ~ + taxon_id: 520 + time_point: ~ + treatment: ~ + uuid_sample_lims: b6ea25f0-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Plasmodium Falciparum + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:34 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289842 + id_sample_tmp: 1271620 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: 3D7400shear + organism: Plasmodium Falciparum + organism_part: ~ + phenotype: ~ + public_name: Plasmodium Falciparum + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Plasmodium_falciparum (3D7) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: 3D7 + subject: ~ + supplier_name: ~ + taxon_id: 5820 + time_point: ~ + treatment: ~ + uuid_sample_lims: b6fb2f58-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: Human + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2011-10-17 14:31:35 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: genomic DNA + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: Neutral + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1289843 + id_sample_tmp: 1271621 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 19:52:46 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: human400shear + organism: Homo sapiens + organism_part: ~ + phenotype: ~ + public_name: Homo sapiens + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:34:05 + reference_genome: Homo_sapiens (GRCh37_53) DO_NOT_USE + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: colo_829 + subject: ~ + supplier_name: ~ + taxon_id: 9606 + time_point: ~ + treatment: ~ + uuid_sample_lims: b73a3702-f8cc-11e0-8838-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: ~ + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2012-03-29 10:56:29 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: ~ + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1392234 + id_sample_tmp: 1373517 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 20:03:53 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: PfIT_Sanger_5kb + organism: ~ + organism_part: ~ + phenotype: ~ + public_name: ~ + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:48:26 + reference_genome: Plasmodium_falciparum (3D7) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: ~ + subject: ~ + supplier_name: ~ + taxon_id: ~ + time_point: ~ + treatment: ~ + uuid_sample_lims: d6b8bc42-798d-11e1-ad7c-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: ~ + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2012-03-29 10:56:30 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: ~ + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: High AT + gender: ~ + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 1392235 + id_sample_tmp: 1373518 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-12 20:03:53 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: PfIT_SOLiD5500_5kb + organism: ~ + organism_part: ~ + phenotype: ~ + public_name: ~ + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 20:48:26 + reference_genome: Plasmodium_falciparum (3D7) + replicate: ~ + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: ~ + subject: ~ + supplier_name: ~ + taxon_id: ~ + time_point: ~ + treatment: ~ + uuid_sample_lims: d7524da8-798d-11e1-ad7c-68b59976a382 +- accession_number: ~ + age: ~ + cell_type: ~ + cohort: ~ + common_name: ~ + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2012-03-29 10:56:31 + customer_measured_concentration: ~ + customer_measured_volume: ~ + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: ~ + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: Genomic + donor_id: ~ + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + 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+ time_point: N/A + treatment: N/A + uuid_sample_lims: 4718d620-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351248 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:09 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706417 + id_sample_tmp: 1685089 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell28 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell28 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 28 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 47277c20-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351250 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:09 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706418 + id_sample_tmp: 1685090 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + 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date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706419 + id_sample_tmp: 1685091 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell30 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell30 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 30 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 47427e30-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351261 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706420 + id_sample_tmp: 1685092 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell31 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell31 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 31 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 475b5d60-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351254 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706421 + id_sample_tmp: 1685093 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell32 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell32 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 32 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 476b8a00-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351255 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 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control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706423 + id_sample_tmp: 1685095 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell34 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell34 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 34 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 478ea260-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351257 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706424 + id_sample_tmp: 1685096 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell35 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell35 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 35 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 47a314c0-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351258 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + 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female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 47b6c3d0-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351259 + age: N/A + cell_type: ESC + cohort: ~ + common_name: Mus Musculus + compound: N/A + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: N/A + created: 2013-09-25 09:10:10 + customer_measured_concentration: ~ + customer_measured_volume: N/A + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + developmental_stage: embryonic stem cell line + disease: N/A + disease_state: N/A + dna_source: Cell Line + donor_id: ~ + dose: N/A + ethnicity: N/A + extraction_method: ~ + father: C57BL/6Ncr + gc_content: Neutral + gender: Male + genotype: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + geographical_region: N/A + growth_condition: alternative 2i/LIF + id_lims: SQSCP + id_sample_lims: 1706426 + id_sample_tmp: 1685098 + immunoprecipitate: N/A + is_resubmitted: ~ + last_updated: 2021-04-12 20:32:06 + marked_as_consent_withdrawn_by: ~ + mother: 129S6/SvEvTac + name: mES_ai2_s2_cell37 + organism: mus musculus + organism_part: N/A + phenotype: N/A + public_name: mES_ai2_s2_cell37 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-12 21:33:23 + reference_genome: Mus_musculus (NCBIm37) + replicate: 37 + sample_type: ~ + sample_visibility: Hold + sanger_sample_id: ~ + sibling: ~ + storage_conditions: ~ + strain: G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female + subject: N/A + supplier_name: ~ + taxon_id: 10090 + time_point: N/A + treatment: N/A + uuid_sample_lims: 47ce1c60-25c2-11e3-96eb-68b59976a382 +- accession_number: ERS351269 + age: N/A + cell_type: ESC + cohort: ~ + 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ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: ~ + gender: Male + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 4396730 + id_sample_tmp: 4339314 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-13 01:03:50 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: 6133STDY8786711 + organism: ~ + organism_part: ~ + phenotype: Blood + public_name: PD41305k_182 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-13 12:07:20 + reference_genome: ~ + replicate: ~ + sample_type: ~ + sample_visibility: ~ + sanger_sample_id: 6133STDY8786711 + sibling: ~ + storage_conditions: ~ + strain: ~ + subject: ~ + supplier_name: PD41305k_182 + taxon_id: 9606 + time_point: ~ + treatment: ~ + uuid_sample_lims: 990a226e-58b9-11ea-9228-fa163e9d6485 +- accession_number: EGAN00002491009 + age: ~ + cell_type: ~ + cohort: Normal + common_name: Homo sapiens + compound: ~ + concentration_determined_by: ~ + consent_withdrawn: 0 + control: ~ + control_type: ~ + country_of_origin: ~ + created: 2020-02-26 17:01:14 + customer_measured_concentration: ~ + customer_measured_volume: 20 + date_of_consent_withdrawn: ~ + date_of_sample_collection: ~ + date_of_sample_extraction: ~ + deleted_at: ~ + description: ~ + developmental_stage: ~ + disease: ~ + disease_state: ~ + dna_source: ~ + donor_id: PD41305k_185 + dose: ~ + ethnicity: ~ + extraction_method: ~ + father: ~ + gc_content: ~ + gender: Male + genotype: ~ + geographical_region: ~ + growth_condition: ~ + id_lims: SQSCP + id_sample_lims: 4396733 + id_sample_tmp: 4339317 + immunoprecipitate: ~ + is_resubmitted: ~ + last_updated: 2021-04-13 01:03:50 + marked_as_consent_withdrawn_by: ~ + mother: ~ + name: 6133STDY8786714 + organism: ~ + organism_part: ~ + phenotype: Blood + public_name: PD41305k_185 + purification_method: ~ + purified: ~ + recorded_at: 2021-04-13 12:07:20 + reference_genome: ~ + replicate: ~ + sample_type: ~ + sample_visibility: ~ + sanger_sample_id: 6133STDY8786714 + sibling: ~ + storage_conditions: ~ + strain: ~ + subject: ~ + supplier_name: PD41305k_185 + taxon_id: 9606 + time_point: ~ + treatment: ~ + uuid_sample_lims: 99276e32-58b9-11ea-9228-fa163e9d6485 + diff --git a/t/data/fixtures_lims_wh_samplesheet/000-Study.yml b/t/data/fixtures_lims_wh_samplesheet/000-Study.yml new file mode 100644 index 00000000..efefbef2 --- /dev/null +++ b/t/data/fixtures_lims_wh_samplesheet/000-Study.yml @@ -0,0 +1,363 @@ +--- +- abbreviation: 198STDY + abstract: ~ + accession_number: ~ + aligned: 1 + array_express_accession_number: ~ + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2008-11-13 13:27:48 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genotyping or cytogenetics + data_release_strategy: open + data_release_timing: standard + deleted_at: ~ + description: None + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: ~ + faculty_sponsor: None + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 198 + id_study_tmp: 177 + last_updated: 2021-10-15 08:54:34 + name: Illumina Controls + prelim_id: ~ + recorded_at: 2021-10-15 08:54:35 + reference_genome: ' ' + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: ~ + study_type: Resequencing + study_visibility: Hold + uuid_study_lims: 2aa1cd2e-a557-11df-8092-00144f01a414 +- abbreviation: 521STDY + abstract: Transcriptome sequencing of Strongyloides ratti + accession_number: ERP001672 + aligned: 1 + array_express_accession_number: E-ERAD-92 + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2010-04-06 16:05:29 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: transcriptomics + data_release_strategy: open + data_release_timing: standard + deleted_at: ~ + description: "Strongyloides ratti is a common gastro-intestinal parasite of the rat." + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: ~ + faculty_sponsor: Matthew + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 521 + id_study_tmp: 496 + last_updated: 2021-10-15 08:54:39 + name: Strongyloides ratti transcriptomics + prelim_id: ~ + recorded_at: 2021-10-15 08:54:42 + reference_genome: ' ' + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: Transcriptome sequencing of Strongyloides ratti + study_type: Transcriptome Analysis + study_visibility: Hold + uuid_study_lims: 2d6848da-a557-11df-8092-00144f01a414 +- abbreviation: 700STDY + abstract: "Purpose of experiment" + accession_number: ~ + aligned: 1 + array_express_accession_number: ~ + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2010-10-07 15:11:00 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genomic sequencing + data_release_strategy: not applicable + data_release_timing: never + deleted_at: ~ + description: "I have agreed to alpha test the kapa hifi qPCR kit." + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: 0 + ethically_approved: ~ + faculty_sponsor: Harold + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 700 + id_study_tmp: 675 + last_updated: 2021-10-15 08:54:42 + name: Kapa HiFi test + prelim_id: ~ + recorded_at: 2021-10-15 08:54:47 + reference_genome: ' ' + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: hifi test + study_type: Whole Genome Sequencing + study_visibility: Hold + uuid_study_lims: e5f58d0c-d66e-11df-98a7-00144f206e2e +- abbreviation: 1697STDY + abstract: 'Identification of ivermectin resistance-conferring loci by sequencing and comparing the genomes of susceptible parents, resistant parents and backcross strains.' + accession_number: ERP000430 + aligned: 0 + array_express_accession_number: ~ + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2010-12-07 15:59:16 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genomic sequencing + data_release_strategy: open + data_release_timing: standard + deleted_at: ~ + description: Two H. contortus ivermectin resistance strains have been backcrossed. + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: ~ + faculty_sponsor: Matthew Berriman + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 1697 + id_study_tmp: 1671 + last_updated: 2021-10-15 08:54:57 + name: Haemonchus contortus Ivermectin Resistance + prelim_id: ~ + recorded_at: 2021-10-15 08:55:05 + reference_genome: ' ' + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: Haemonchus contortus Ivermectin Resistance + study_type: Whole Genome Sequencing + study_visibility: Hold + uuid_study_lims: 1b37a392-021b-11e0-9fca-00144f01a414 +- abbreviation: MPRandD + abstract: To establish a robust Mate Pair library preparation protocol + accession_number: ~ + aligned: 1 + array_express_accession_number: ~ + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2011-09-23 09:50:04 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genomic sequencing + data_release_strategy: not applicable + data_release_timing: never + deleted_at: ~ + description: R&D + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: 0 + ethically_approved: ~ + faculty_sponsor: Harold + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 1980 + id_study_tmp: 1954 + last_updated: 2021-10-15 08:55:04 + name: Mate Pair R&D + prelim_id: ~ + recorded_at: 2021-10-15 08:55:12 + reference_genome: Homo_sapiens (GRCh38_15) + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: Mate Pair R&D + study_type: Whole Genome Sequencing + study_visibility: Hold + uuid_study_lims: 69e77f84-e5c9-11e0-8713-68b59976a382 +- abbreviation: 2239STDY + abstract: 'Cancer is driven by mutation' + accession_number: EGAS00001000290 + aligned: 1 + array_express_accession_number: ~ + contains_human_dna: 1 + contaminated_human_dna: 0 + created: 2012-06-08 10:15:39 + data_access_group: cancer + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genomic sequencing + data_release_strategy: managed + data_release_timing: standard + deleted_at: ~ + description: 'Wholegenome libraries will be prepared.' + ega_dac_accession_number: EGAC00001000010 + ega_policy_accession_number: EGAP00001000037 + ena_project_id: PRJEB12 + ethically_approved: 1 + faculty_sponsor: Peter + hmdmc_number: 10/050 + id_lims: SQSCP + id_study_lims: 2239 + id_study_tmp: 2208 + last_updated: 2021-10-15 08:55:10 + name: MPN Whole Genomes + prelim_id: ~ + recorded_at: 2021-10-15 08:55:20 + reference_genome: Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT) + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: Myeloproliferative Disease Whole Genomes + study_type: Cancer Genomics + study_visibility: Hold + uuid_study_lims: e5bfd278-b152-11e1-b267-68b59976a382 +- abbreviation: 2501STDY + abstract: "Epigenetic mechanisms including non-coding RNAs" + accession_number: ERP002223 + aligned: 1 + array_express_accession_number: E-ERAD-155 + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2013-01-16 13:54:59 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: transcriptomics + data_release_strategy: not applicable + data_release_timing: never + deleted_at: ~ + description: "In order to examine the impact of genetic variation on epigenetic marking and control of gene expression." + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: ~ + faculty_sponsor: David + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 2501 + id_study_tmp: 2470 + last_updated: 2021-10-15 08:55:16 + name: Mouse model to quantify genotype-epigenotype variations_RNA + prelim_id: ~ + recorded_at: 2021-10-15 08:55:27 + reference_genome: Mus_musculus (GRCm38) + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: 'Mouse model to quantify genotype-epigenotype variations ' + study_type: Transcriptome Analysis + study_visibility: Public + uuid_study_lims: 516ac470-5fe4-11e2-9109-68b59976a382 +- abbreviation: 2658STDY + abstract: "This study aims to investigate." + accession_number: ERP003293 + aligned: 1 + array_express_accession_number: E-ERAD-186 + contains_human_dna: 0 + contaminated_human_dna: 0 + created: 2013-06-06 20:47:20 + data_access_group: ~ + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: transcriptomics + data_release_strategy: open + data_release_timing: standard + deleted_at: ~ + description: "This study aims to investigate\r\n" + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: ~ + faculty_sponsor: Sarah Teichmann + hmdmc_number: ~ + id_lims: SQSCP + id_study_lims: 2658 + id_study_tmp: 2627 + last_updated: 2021-10-15 08:55:20 + name: Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency + prelim_id: ~ + recorded_at: 2021-10-15 08:55:32 + reference_genome: Mus_musculus (NCBIm37) + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: 'Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ' + study_type: Transcriptome Analysis + study_visibility: Hold + uuid_study_lims: 48187e10-ceea-11e2-941e-68b59976a382 + +- abbreviation: 6133STDY + abstract: 'Aim to determine age at acquisition of clonal haematopoiesis mutations, clonal architecture, and dynamics of clonal expansions.' + accession_number: ~ + aligned: 1 + array_express_accession_number: ~ + contains_human_dna: 1 + contaminated_human_dna: 0 + created: 2020-02-12 11:42:56 + data_access_group: cancer + data_deletion_period: ~ + data_destination: ~ + data_release_delay_period: ~ + data_release_delay_reason: ~ + data_release_sort_of_study: genomic sequencing + data_release_strategy: managed + data_release_timing: standard + deleted_at: ~ + description: Sequencing of blood stem cell-derived colonies. + ega_dac_accession_number: ~ + ega_policy_accession_number: ~ + ena_project_id: ~ + ethically_approved: 1 + faculty_sponsor: George + hmdmc_number: 17/006 + id_lims: SQSCP + id_study_lims: 6133 + id_study_tmp: 5963 + last_updated: 2021-10-15 08:56:39 + name: ImmunoAgeing_Colonies_WGS + prelim_id: ~ + recorded_at: 2021-10-15 08:57:06 + reference_genome: Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome) + remove_x_and_autosomes: 0 + s3_email_list: ~ + separate_y_chromosome_data: 0 + state: active + study_title: ImmunoAgeing_Colonies_WGS + study_type: Cancer Genomics + study_visibility: Hold + uuid_study_lims: d0099f20-4d8c-11ea-90fc-fa163e2f1184 + diff --git a/t/data/fixtures_lims_wh_samplesheet/100-IseqFlowcell.yml b/t/data/fixtures_lims_wh_samplesheet/100-IseqFlowcell.yml new file mode 100644 index 00000000..3313f624 --- /dev/null +++ b/t/data/fixtures_lims_wh_samplesheet/100-IseqFlowcell.yml @@ -0,0 +1,7054 @@ +--- +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019884 + id_library_lims: NT262278V + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271610 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789278 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:46 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 1 + tag_index: 1 + tag_sequence: ATCACGTT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019885 + id_library_lims: NT262279W + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271611 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789279 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 2 + tag_index: 2 + tag_sequence: CGATGTTT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019886 + id_library_lims: NT262280P + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271612 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789280 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 3 + tag_index: 3 + tag_sequence: TTAGGCAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019887 + id_library_lims: NT262281Q + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271613 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789281 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 4 + tag_index: 4 + tag_sequence: TGACCACT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019888 + id_library_lims: NT262282R + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271614 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789282 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 5 + tag_index: 5 + tag_sequence: ACAGTGGT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 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tag_index: 10 + tag_sequence: TAGCTTGT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019894 + id_library_lims: NT262288A + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271620 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789288 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 11 + tag_index: 11 + tag_sequence: GGCTACAG + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 3789299 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0001310-300 + forward_read_length: 150 + id_flowcell_lims: 13994 + id_iseq_flowcell_tmp: 3019895 + id_library_lims: NT262289B + id_lims: SQSCP + id_pool_lims: NT262290R + id_sample_tmp: 1271621 + id_study_tmp: 675 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:36:43 + legacy_library_id: 3789289 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:36:47 + requested_insert_size_from: 200 + requested_insert_size_to: 700 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 12 + tag_index: 12 + tag_sequence: CTTGTACT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0702 + entity_id_lims: 3911772 + entity_type: library + external_release: 1 + flowcell_barcode: MS0001309-300 + forward_read_length: 150 + id_flowcell_lims: 14505 + id_iseq_flowcell_tmp: 3019896 + id_library_lims: NT262277U + id_lims: SQSCP + id_pool_lims: NT262277U + id_sample_tmp: 1271608 + id_study_tmp: 496 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2016-02-09 09:39:08 + legacy_library_id: 3789277 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:39:08 + requested_insert_size_from: 300 + requested_insert_size_to: 400 + reverse_read_length: 150 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + 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~ + tag2_set_name: ~ + tag_identifier: 1 + tag_index: 1 + tag_sequence: ATCACGTTAT + tag_set_id_lims: 7 + tag_set_name: '1 to 24 - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 4895948 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0009261-300 + forward_read_length: 130 + id_flowcell_lims: 16537 + id_iseq_flowcell_tmp: 3020610 + id_library_lims: NT283586V + id_lims: SQSCP + id_pool_lims: NT283588A + id_sample_tmp: 1373520 + id_study_tmp: 1954 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:53:17 + legacy_library_id: 4894528 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Long range + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:53:17 + requested_insert_size_from: 2000 + requested_insert_size_to: 6000 + reverse_read_length: 130 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 2 + tag_index: 2 + tag_sequence: CGATGTTTAT + tag_set_id_lims: 7 + tag_set_name: '1 to 24 - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 4895948 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0009261-300 + forward_read_length: 130 + id_flowcell_lims: 16537 + id_iseq_flowcell_tmp: 3020611 + id_library_lims: NT283585U + id_lims: SQSCP + id_pool_lims: NT283588A + id_sample_tmp: 1373519 + id_study_tmp: 1954 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:53:17 + legacy_library_id: 4894527 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Long range + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:53:17 + requested_insert_size_from: 2000 + requested_insert_size_to: 6000 + reverse_read_length: 130 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 8 + tag_index: 8 + tag_sequence: ACTTGATGAT + tag_set_id_lims: 7 + tag_set_name: '1 to 24 - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 4895948 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0009261-300 + forward_read_length: 130 + id_flowcell_lims: 16537 + id_iseq_flowcell_tmp: 3020612 + id_library_lims: NT283583S + id_lims: SQSCP + id_pool_lims: NT283588A + id_sample_tmp: 1373517 + id_study_tmp: 1954 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:53:17 + legacy_library_id: 4894525 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Long range + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:53:17 + requested_insert_size_from: 2000 + requested_insert_size_to: 6000 + reverse_read_length: 130 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 9 + tag_index: 9 + tag_sequence: GATCAGCGAT + tag_set_id_lims: 7 + tag_set_name: '1 to 24 - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0696 + entity_id_lims: 4895948 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: MS0009261-300 + forward_read_length: 130 + id_flowcell_lims: 16537 + id_iseq_flowcell_tmp: 3020613 + id_library_lims: NT283584T + id_lims: SQSCP + id_pool_lims: NT283588A + id_sample_tmp: 1373518 + id_study_tmp: 1954 + is_r_and_d: 1 + is_spiked: 0 + last_updated: 2016-02-09 09:53:17 + legacy_library_id: 4894526 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Long range + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 09:53:17 + requested_insert_size_from: 2000 + requested_insert_size_to: 6000 + reverse_read_length: 130 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 10 + tag_index: 10 + tag_sequence: TAGCTTGTAT + tag_set_id_lims: 7 + tag_set_name: '1 to 24 - 10 mer tags' + team: ~ + workflow: ~ +- bait_name: ~ + cost_code: S0702 + entity_id_lims: 8381746 + entity_type: library + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852275 + id_library_lims: NT332136W + id_lims: SQSCP + id_pool_lims: NT332136W + id_sample_tmp: 1640967 + id_study_tmp: 1671 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 7809257 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: No PCR + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 400 + requested_insert_size_to: 550 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: ~ + tag_index: ~ + tag_sequence: ~ + tag_set_id_lims: ~ + tag_set_name: ~ + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381746 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852274 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT332136W + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 1 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0702 + entity_id_lims: 8381744 + entity_type: library + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852277 + id_library_lims: NT332137A + id_lims: SQSCP + id_pool_lims: NT332137A + id_sample_tmp: 1640968 + id_study_tmp: 1671 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 7809258 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: No PCR + position: 2 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 400 + requested_insert_size_to: 550 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: ~ + tag_index: ~ + tag_sequence: ~ + tag_set_id_lims: ~ + tag_set_name: ~ + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381744 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852276 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT332137A + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 2 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0702 + entity_id_lims: 8381745 + entity_type: library + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852279 + id_library_lims: NT332137A + id_lims: SQSCP + id_pool_lims: NT332137A + id_sample_tmp: 1640968 + id_study_tmp: 1671 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 7809258 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: No PCR + position: 3 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 400 + requested_insert_size_to: 550 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: ~ + tag_index: ~ + tag_sequence: ~ + tag_set_id_lims: ~ + tag_set_name: ~ + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381745 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852278 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT332137A + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 3 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852281 + id_library_lims: NT342271K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685062 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215019 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 1 + tag_index: 1 + tag_sequence: TAAGGCGATAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852282 + id_library_lims: NT342272L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685063 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215020 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 2 + tag_index: 2 + tag_sequence: CGTACTAGTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852283 + id_library_lims: NT342273M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685064 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215021 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 3 + tag_index: 3 + tag_sequence: AGGCAGAATAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852284 + id_library_lims: NT342274N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685065 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215022 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 4 + tag_index: 4 + tag_sequence: TCCTGAGCTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852285 + id_library_lims: NT342275O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685066 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215023 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 5 + tag_index: 5 + tag_sequence: GGACTCCTTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852286 + id_library_lims: NT342276P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685067 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215024 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 6 + tag_index: 6 + tag_sequence: TAGGCATGTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852287 + id_library_lims: NT342277Q + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685068 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215025 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 7 + tag_index: 7 + tag_sequence: CTCTCTACTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852288 + id_library_lims: NT342278R + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685069 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215026 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 8 + tag_index: 8 + tag_sequence: CAGAGAGGTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852289 + id_library_lims: NT342279S + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685070 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215027 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 9 + tag_index: 9 + tag_sequence: GCTACGCTTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852290 + id_library_lims: NT342280L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685071 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215028 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 10 + tag_index: 10 + tag_sequence: CGAGGCTGTAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852291 + id_library_lims: NT342281M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685072 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215029 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 11 + tag_index: 11 + tag_sequence: AAGAGGCATAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852292 + id_library_lims: NT342282N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685073 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215030 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 12 + tag_index: 12 + tag_sequence: GTAGAGGATAGATCGC + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852293 + id_library_lims: NT342283O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685074 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215031 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 13 + tag_index: 13 + tag_sequence: TAAGGCGACTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852294 + id_library_lims: NT342284P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685075 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215032 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 14 + tag_index: 14 + tag_sequence: CGTACTAGCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852295 + id_library_lims: NT342285Q + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685076 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215033 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 15 + tag_index: 15 + tag_sequence: AGGCAGAACTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852296 + id_library_lims: NT342286R + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685077 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215034 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 16 + tag_index: 16 + tag_sequence: TCCTGAGCCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852297 + id_library_lims: NT342287S + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685078 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215035 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 17 + tag_index: 17 + tag_sequence: GGACTCCTCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852298 + id_library_lims: NT342288T + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685079 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215036 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 18 + tag_index: 18 + tag_sequence: TAGGCATGCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852299 + id_library_lims: NT342289U + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685080 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215037 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 19 + tag_index: 19 + tag_sequence: CTCTCTACCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852300 + id_library_lims: NT342290N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685081 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215038 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 20 + tag_index: 20 + tag_sequence: CAGAGAGGCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852301 + id_library_lims: NT342291O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685082 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215039 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 21 + tag_index: 21 + tag_sequence: GCTACGCTCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852302 + id_library_lims: NT342292P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685083 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215040 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 22 + tag_index: 22 + tag_sequence: CGAGGCTGCTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852303 + id_library_lims: NT342293Q + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685084 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215041 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 23 + tag_index: 23 + tag_sequence: AAGAGGCACTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852304 + id_library_lims: NT342294R + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685085 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215042 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 24 + tag_index: 24 + tag_sequence: GTAGAGGACTCTCTAT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852305 + id_library_lims: NT342295S + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685086 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215043 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 25 + tag_index: 25 + tag_sequence: TAAGGCGATATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852306 + id_library_lims: NT342296T + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685087 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215044 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 26 + tag_index: 26 + tag_sequence: CGTACTAGTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852307 + id_library_lims: NT342297U + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685088 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215045 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 27 + tag_index: 27 + tag_sequence: AGGCAGAATATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852308 + id_library_lims: NT342298V + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685089 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215046 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 28 + tag_index: 28 + tag_sequence: TCCTGAGCTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852309 + id_library_lims: NT342299W + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685090 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215047 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 29 + tag_index: 29 + tag_sequence: GGACTCCTTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852310 + id_library_lims: NT342300V + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685091 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215048 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 30 + tag_index: 30 + tag_sequence: TAGGCATGTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852311 + id_library_lims: NT342301W + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685092 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215049 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 31 + tag_index: 31 + tag_sequence: CTCTCTACTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852312 + id_library_lims: NT342302A + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685093 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215050 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 32 + tag_index: 32 + tag_sequence: CAGAGAGGTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852313 + id_library_lims: NT342303B + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685094 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215051 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 33 + tag_index: 33 + tag_sequence: GCTACGCTTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852314 + id_library_lims: NT342304C + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685095 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215052 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 34 + tag_index: 34 + tag_sequence: CGAGGCTGTATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852315 + id_library_lims: NT342305D + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685096 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215053 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 35 + tag_index: 35 + tag_sequence: AAGAGGCATATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852316 + id_library_lims: NT342306E + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685097 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215054 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 36 + tag_index: 36 + tag_sequence: GTAGAGGATATCCTCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852317 + id_library_lims: NT342307F + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685098 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215055 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 37 + tag_index: 37 + tag_sequence: TAAGGCGAAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852318 + id_library_lims: NT342308G + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685099 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215056 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 38 + tag_index: 38 + tag_sequence: CGTACTAGAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852319 + id_library_lims: NT342309H + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685100 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215057 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 39 + tag_index: 39 + tag_sequence: AGGCAGAAAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852320 + id_library_lims: NT342310A + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685101 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215058 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 40 + tag_index: 40 + tag_sequence: TCCTGAGCAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852321 + id_library_lims: NT342311B + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685102 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215059 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 41 + tag_index: 41 + tag_sequence: GGACTCCTAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852322 + id_library_lims: NT342312C + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685103 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215060 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 42 + tag_index: 42 + tag_sequence: TAGGCATGAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852323 + id_library_lims: NT342313D + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685104 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215061 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 43 + tag_index: 43 + tag_sequence: CTCTCTACAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852324 + id_library_lims: NT342314E + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685105 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215062 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 44 + tag_index: 44 + tag_sequence: CAGAGAGGAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852325 + id_library_lims: NT342315F + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685106 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215063 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 45 + tag_index: 45 + tag_sequence: GCTACGCTAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852326 + id_library_lims: NT342316G + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685107 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215064 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 46 + tag_index: 46 + tag_sequence: CGAGGCTGAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852327 + id_library_lims: NT342317H + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685108 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215065 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 47 + tag_index: 47 + tag_sequence: AAGAGGCAAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852328 + id_library_lims: NT342318I + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685109 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215066 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 48 + tag_index: 48 + tag_sequence: GTAGAGGAAGAGTAGA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852329 + id_library_lims: NT342319J + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685110 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215067 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 49 + tag_index: 49 + tag_sequence: TAAGGCGAGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852330 + id_library_lims: NT342320C + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685111 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215068 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 50 + tag_index: 50 + tag_sequence: CGTACTAGGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852331 + id_library_lims: NT342321D + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685112 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215069 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 51 + tag_index: 51 + tag_sequence: AGGCAGAAGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852332 + id_library_lims: NT342322E + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685113 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215070 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 52 + tag_index: 52 + tag_sequence: TCCTGAGCGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852333 + id_library_lims: NT342323F + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685114 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215071 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 53 + tag_index: 53 + tag_sequence: GGACTCCTGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852334 + id_library_lims: NT342324G + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685115 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215072 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 54 + tag_index: 54 + tag_sequence: TAGGCATGGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852335 + id_library_lims: NT342325H + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685116 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215073 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 55 + tag_index: 55 + tag_sequence: CTCTCTACGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852336 + id_library_lims: NT342326I + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685117 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215074 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 56 + tag_index: 56 + tag_sequence: CAGAGAGGGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852337 + id_library_lims: NT342327J + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685118 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215075 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 57 + tag_index: 57 + tag_sequence: GCTACGCTGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852338 + id_library_lims: NT342328K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685119 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215076 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 58 + tag_index: 58 + tag_sequence: CGAGGCTGGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852339 + id_library_lims: NT342329L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685120 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215077 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 59 + tag_index: 59 + tag_sequence: AAGAGGCAGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852340 + id_library_lims: NT342330E + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685121 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215078 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 60 + tag_index: 60 + tag_sequence: GTAGAGGAGTAAGGAG + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852341 + id_library_lims: NT342331F + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685122 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215079 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 61 + tag_index: 61 + tag_sequence: TAAGGCGAACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852342 + id_library_lims: NT342332G + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685123 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215080 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 62 + tag_index: 62 + tag_sequence: CGTACTAGACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852343 + id_library_lims: NT342333H + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685124 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215081 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 63 + tag_index: 63 + tag_sequence: AGGCAGAAACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852344 + id_library_lims: NT342334I + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685125 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215082 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 64 + tag_index: 64 + tag_sequence: TCCTGAGCACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852345 + id_library_lims: NT342335J + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685126 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215083 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 65 + tag_index: 65 + tag_sequence: GGACTCCTACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852346 + id_library_lims: NT342336K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685127 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215084 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 66 + tag_index: 66 + tag_sequence: TAGGCATGACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852347 + id_library_lims: NT342337L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685128 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215085 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 67 + tag_index: 67 + tag_sequence: CTCTCTACACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852348 + id_library_lims: NT342338M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685129 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215086 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 68 + tag_index: 68 + tag_sequence: CAGAGAGGACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852349 + id_library_lims: NT342339N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685130 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215087 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 69 + tag_index: 69 + tag_sequence: GCTACGCTACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852350 + id_library_lims: NT342340G + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685131 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215088 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 70 + tag_index: 70 + tag_sequence: CGAGGCTGACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852351 + id_library_lims: NT342341H + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685132 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215089 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 71 + tag_index: 71 + tag_sequence: AAGAGGCAACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852352 + id_library_lims: NT342342I + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685133 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215090 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 72 + tag_index: 72 + tag_sequence: GTAGAGGAACTGCATA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852353 + id_library_lims: NT342343J + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685134 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215091 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 73 + tag_index: 73 + tag_sequence: TAAGGCGAAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852354 + id_library_lims: NT342344K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685135 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215092 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 74 + tag_index: 74 + tag_sequence: CGTACTAGAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852355 + id_library_lims: NT342345L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685136 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215093 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 75 + tag_index: 75 + tag_sequence: AGGCAGAAAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852356 + id_library_lims: NT342346M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685137 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215094 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 76 + tag_index: 76 + tag_sequence: TCCTGAGCAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852357 + id_library_lims: NT342347N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685138 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215095 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 77 + tag_index: 77 + tag_sequence: GGACTCCTAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852358 + id_library_lims: NT342348O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685139 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215096 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 78 + tag_index: 78 + tag_sequence: TAGGCATGAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852359 + id_library_lims: NT342349P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685140 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215097 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 79 + tag_index: 79 + tag_sequence: CTCTCTACAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852360 + id_library_lims: NT342350I + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685141 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215098 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 80 + tag_index: 80 + tag_sequence: CAGAGAGGAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852361 + id_library_lims: NT342351J + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685142 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215099 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 81 + tag_index: 81 + tag_sequence: GCTACGCTAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852362 + id_library_lims: NT342352K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685143 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215100 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 82 + tag_index: 82 + tag_sequence: CGAGGCTGAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852363 + id_library_lims: NT342353L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685144 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215101 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 83 + tag_index: 83 + tag_sequence: AAGAGGCAAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852364 + id_library_lims: NT342354M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685145 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215102 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 84 + tag_index: 84 + tag_sequence: GTAGAGGAAAGGAGTA + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852365 + id_library_lims: NT342355N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685146 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215103 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 85 + tag_index: 85 + tag_sequence: TAAGGCGACTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852366 + id_library_lims: NT342356O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685147 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215104 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 86 + tag_index: 86 + tag_sequence: CGTACTAGCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852367 + id_library_lims: NT342357P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685148 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215105 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 87 + tag_index: 87 + tag_sequence: AGGCAGAACTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852368 + id_library_lims: NT342358Q + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685149 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215106 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 88 + tag_index: 88 + tag_sequence: TCCTGAGCCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852369 + id_library_lims: NT342359R + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685150 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215107 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 89 + tag_index: 89 + tag_sequence: GGACTCCTCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852370 + id_library_lims: NT342360K + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685151 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215108 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 90 + tag_index: 90 + tag_sequence: TAGGCATGCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852371 + id_library_lims: NT342361L + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685152 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215109 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 91 + tag_index: 91 + tag_sequence: CTCTCTACCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852372 + id_library_lims: NT342362M + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685153 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215110 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 92 + tag_index: 92 + tag_sequence: CAGAGAGGCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852373 + id_library_lims: NT342363N + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685154 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215111 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 93 + tag_index: 93 + tag_sequence: GCTACGCTCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852374 + id_library_lims: NT342364O + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685155 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215112 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 94 + tag_index: 94 + tag_sequence: CGAGGCTGCTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852375 + id_library_lims: NT342365P + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685156 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215113 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 95 + tag_index: 95 + tag_sequence: AAGAGGCACTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0917 + entity_id_lims: 8381739 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852376 + id_library_lims: NT342366Q + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1685157 + id_study_tmp: 2627 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8215114 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: qPCR only + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 96 + tag_index: 96 + tag_sequence: GTAGAGGACTAAGCCT + tag_set_id_lims: 24 + tag_set_name: 'Nextera DUAL v2 - 96 tags - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381739 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852280 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT342446P + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 4 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:19 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S0814 + entity_id_lims: 8381740 + entity_type: library + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852378 + id_library_lims: NT342910S + id_lims: SQSCP + id_pool_lims: NT342910S + id_sample_tmp: 1690652 + id_study_tmp: 2208 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8269740 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: No PCR + position: 5 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 300 + requested_insert_size_to: 500 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: ~ + tag_index: ~ + tag_sequence: ~ + tag_set_id_lims: ~ + tag_set_name: ~ + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381740 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852377 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT342910S + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 5 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S1553 + entity_id_lims: 8381741 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852380 + id_library_lims: NT343420J + id_lims: SQSCP + id_pool_lims: NT343441O + id_sample_tmp: 1673167 + id_study_tmp: 2470 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8324592 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Pre-quality controlled + position: 6 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 100 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 64 + tag_index: 64 + tag_sequence: GAGATTCCTAATCTTA + tag_set_id_lims: 37 + tag_set_name: 'Illumina_dual_indexed96 - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S1553 + entity_id_lims: 8381741 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852381 + id_library_lims: NT343421K + id_lims: SQSCP + id_pool_lims: NT343441O + id_sample_tmp: 1673168 + id_study_tmp: 2470 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8324593 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Pre-quality controlled + position: 6 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 100 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 65 + tag_index: 65 + tag_sequence: ATTCAGAATAATCTTA + tag_set_id_lims: 37 + tag_set_name: 'Illumina_dual_indexed96 - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381741 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852379 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT343441O + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 6 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: ~ + requested_insert_size_to: ~ + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 168 + tag_index: 168 + tag_sequence: ACAACGCAAT + tag_set_id_lims: 6 + tag_set_name: 'Sanger_168tags - 10 mer tags' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S1553 + entity_id_lims: 8381742 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852383 + id_library_lims: NT343422L + id_lims: SQSCP + id_pool_lims: NT343442P + id_sample_tmp: 1673169 + id_study_tmp: 2470 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8324594 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Pre-quality controlled + position: 7 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 100 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 76 + tag_index: 76 + tag_sequence: GAGATTCCCAGGACGT + tag_set_id_lims: 37 + tag_set_name: 'Illumina_dual_indexed96 - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S1553 + entity_id_lims: 8381742 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852384 + id_library_lims: NT343423M + id_lims: SQSCP + id_pool_lims: NT343442P + id_sample_tmp: 1673170 + id_study_tmp: 2470 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8324595 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: Pre-quality controlled + position: 7 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 100 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 77 + tag_index: 77 + tag_sequence: ATTCAGAACAGGACGT + tag_set_id_lims: 37 + tag_set_name: 'Illumina_dual_indexed96 - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: ~ + entity_id_lims: 8381742 + entity_type: library_indexed_spike + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852382 + id_library_lims: NT310838E + id_lims: SQSCP + id_pool_lims: NT343442P + id_sample_tmp: 1237247 + id_study_tmp: 177 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 6200285 + loading_concentration: ~ + manual_qc: 1 + pipeline_id_lims: ~ + position: 7 + 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Pre-quality controlled + position: 8 + primer_panel: ~ + priority: 0 + purpose: standard + recorded_at: 2016-02-09 11:12:20 + requested_insert_size_from: 100 + requested_insert_size_to: 1000 + reverse_read_length: 100 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: ~ + tag2_identifier: ~ + tag2_sequence: ~ + tag2_set_id_lims: ~ + tag2_set_name: ~ + tag_identifier: 88 + tag_index: 88 + tag_sequence: GAGATTCCGTACTGAC + tag_set_id_lims: 37 + tag_set_name: 'Illumina_dual_indexed96 - 16mer' + team: Illumina-C + workflow: ~ +- bait_name: ~ + cost_code: S1553 + entity_id_lims: 8381743 + entity_type: library_indexed + external_release: 1 + flowcell_barcode: C2M2HACXX + forward_read_length: 100 + id_flowcell_lims: 23798 + id_iseq_flowcell_tmp: 2852387 + id_library_lims: NT343425O + id_lims: SQSCP + id_pool_lims: NT343444R + id_sample_tmp: 1673172 + id_study_tmp: 2470 + is_r_and_d: 0 + is_spiked: 1 + last_updated: 2016-02-09 11:12:09 + legacy_library_id: 8324597 + 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id_pool_lims: NT1625362I + id_sample_tmp: 4339288 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037083 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 60 + tag2_sequence: ACCAAAGC + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 60 + tag_index: 21 + tag_sequence: AAACATCG + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542510 + id_library_lims: DN589410K:A9 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339293 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037048 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 65 + tag2_sequence: CCGATAAA + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 65 + tag_index: 22 + tag_sequence: GCTGCGCT + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542511 + id_library_lims: DN589410K:C9 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339295 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037072 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 67 + tag2_sequence: CGCCGCCC + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 67 + tag_index: 23 + tag_sequence: TGTCAGCT + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542512 + id_library_lims: DN589410K:D9 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339296 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037084 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 68 + tag2_sequence: TGCCGGCA + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 68 + tag_index: 24 + tag_sequence: CTCTCCGG + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542513 + id_library_lims: DN589410K:H9 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339300 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037134 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 72 + tag2_sequence: GATGGCTA + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 72 + tag_index: 25 + tag_sequence: AGAGTTAC + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542514 + id_library_lims: DN589410K:B10 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339302 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037061 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 74 + tag2_sequence: AAGCTCCG + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 74 + tag_index: 26 + tag_sequence: CTCTTTAT + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542515 + id_library_lims: DN589410K:C10 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339303 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037073 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 75 + tag2_sequence: ATAGGCAA + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 75 + tag_index: 27 + tag_sequence: AGAGAGCC + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542516 + id_library_lims: DN589410K:D10 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339304 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037085 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 76 + tag2_sequence: CCGGTGCC + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 76 + tag_index: 28 + tag_sequence: CATCCACT + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542517 + id_library_lims: DN589410K:D11 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339312 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037086 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 84 + tag2_sequence: TAACCGCG + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 84 + tag_index: 29 + tag_sequence: CATTCTTC + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542518 + id_library_lims: DN589410K:E11 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339313 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037098 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 85 + tag2_sequence: GAAGAGCC + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 85 + tag_index: 30 + tag_sequence: CTCGACGT + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542519 + id_library_lims: DN589410K:F11 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339314 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037110 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 86 + tag2_sequence: ATCCTGAG + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 86 + tag_index: 31 + tag_sequence: AGTTGCAA + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ +- bait_name: ~ + cost_code: S4360 + entity_id_lims: 30355804 + entity_type: library_indexed + external_release: 0 + flowcell_barcode: MS9462968-50V2 + forward_read_length: 25 + id_flowcell_lims: 76873 + id_iseq_flowcell_tmp: 7542520 + id_library_lims: DN589410K:A12 + id_lims: SQSCP + id_pool_lims: NT1625362I + id_sample_tmp: 4339317 + id_study_tmp: 5963 + is_r_and_d: 0 + is_spiked: 0 + last_updated: 2020-08-10 21:00:48 + legacy_library_id: 27037051 + loading_concentration: ~ + manual_qc: 0 + pipeline_id_lims: Standard + position: 1 + primer_panel: ~ + priority: 3 + purpose: standard + recorded_at: 2020-08-10 21:00:49 + requested_insert_size_from: 450 + requested_insert_size_to: 450 + reverse_read_length: 25 + spiked_phix_barcode: ~ + spiked_phix_percentage: ~ + suboptimal: 1 + tag2_identifier: 89 + tag2_sequence: AAAGGCTG + tag2_set_id_lims: 190 + tag2_set_name: TS_RNAhWGS_UDI96_i5 + tag_identifier: 89 + tag_index: 32 + tag_sequence: GTAAGATG + tag_set_id_lims: 191 + tag_set_name: TS_RNAhWGS_UDI96_i7 + team: Illumina-HTP + workflow: ~ + diff --git a/t/data/fixtures_lims_wh_samplesheet/100-StudyUser.yml b/t/data/fixtures_lims_wh_samplesheet/100-StudyUser.yml new file mode 100644 index 00000000..1493987f --- /dev/null +++ b/t/data/fixtures_lims_wh_samplesheet/100-StudyUser.yml @@ -0,0 +1,37 @@ +--- +- email: user1@sanger.ac.uk + id_study_tmp: 5963 + id_study_users_tmp: 530314 + last_updated: 2021-10-15 08:56:39 + login: user1 + name: Claire + role: manager +- email: user2@sanger.ac.uk + id_study_tmp: 5963 + id_study_users_tmp: 530316 + last_updated: 2021-10-15 08:56:39 + login: user2 + name: Calli + role: manager +- email: user3@sanger.ac.uk + id_study_tmp: 5963 + id_study_users_tmp: 530318 + last_updated: 2021-10-15 08:56:39 + login: user3 + name: Laura + role: manager +- email: user1@sanger.ac.uk + id_study_tmp: 5963 + id_study_users_tmp: 530320 + last_updated: 2021-10-15 08:56:39 + login: user1 + name: Claire + role: owner +- email: user4@sanger.ac.uk + id_study_tmp: 5963 + id_study_users_tmp: 530322 + last_updated: 2021-10-15 08:56:39 + login: user4 + name: Margarete + role: follower + diff --git a/t/data/samplesheet/1control7libs_extended.csv b/t/data/samplesheet/1control7libs_extended.csv deleted file mode 100644 index 164acddc..00000000 --- a/t/data/samplesheet/1control7libs_extended.csv +++ /dev/null @@ -1,10 +0,0 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36189,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -2,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36199,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -3,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36202,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -4,79577,phiX CT1462-2 1,,,,,,,,,,,1,0,,,phiX CT1462-2 1,,,,,,standard,,43779,,,,,,,,,9836,,phiX CT1462-2 1,,,,,,,0,0,,,,,,,, -5,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36203,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -6,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36209,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -7,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36210,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, -8,57440,EGAN00001001569,,,,,,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk sm2@sanger.ac.uk,dg10@sanger.ac.uk las@sanger.ac.uk pc8@sanger.ac.uk,sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,,,PD3918a 1,Human,9606,S0277,333,CLL whole genome,standard,pass,36211,from:300 to:400,EGAN00001001569,,Homo sapiens,,,,,7283,,PD3918a,,,,,EGAS00001000014,1,0,0,Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information%2C and the identification of novel rearranged cancer genes and gene fusions.,333,CLL whole genome,,,CLL Cancer Whole Genome Sequencing,, diff --git a/t/data/samplesheet/4pool4libs_extended.csv b/t/data/samplesheet/4pool4libs_extended.csv index 344ab8b1..d3d3d0d3 100644 --- a/t/data/samplesheet/4pool4libs_extended.csv +++ b/t/data/samplesheet/4pool4libs_extended.csv @@ -1,112 +1,112 @@ [Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,7809257,ERS323818,,,,,No PCR,,,hr1@sanger.ac.uk jc17@sanger.ac.uk neh@sanger.ac.uk,jc17@sanger.ac.uk neh@sanger.ac.uk,neh@sanger.ac.uk,hr1@sanger.ac.uk,,0,0,8381746,0,Hc_4_BC4_P2_5046_340285 7809257,Haemonchus contortus,6289,S0702,714,Haemonchus contortus Ivermectin Resistance Genomics Study,standard,,5707613,from:400 to:550,ERS323818,,Haemonchus contortus,,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,168,ERP000430,,0,0,Two H. contortus ivermectin resistance strains have been backcrossed 4 times against the susceptible genome strain. Parental strains and backcross strains will be sequenced in order to identify regions of the genome linked to ivermectin resistance-conferring loci.,1697,Haemonchus contortus Ivermectin Resistance,,,Haemonchus contortus Ivermectin Resistance,, -2,7809258,ERS323819,,,,,No PCR,,,hr1@sanger.ac.uk jc17@sanger.ac.uk neh@sanger.ac.uk,jc17@sanger.ac.uk neh@sanger.ac.uk,neh@sanger.ac.uk,hr1@sanger.ac.uk,,0,0,8381744,0,Hc_10_BC4_P2_5779_340285 7809258,Haemonchus contortus,6289,S0702,714,Haemonchus contortus Ivermectin Resistance Genomics Study,standard,,5707611,from:400 to:550,ERS323819,,Haemonchus contortus,,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,,0,0,Two H. contortus ivermectin resistance strains have been backcrossed 4 times against the susceptible genome strain. Parental strains and backcross strains will be sequenced in order to identify regions of the genome linked to ivermectin resistance-conferring loci.,1697,Haemonchus contortus Ivermectin Resistance,,,Haemonchus contortus Ivermectin Resistance,, -3,7809258,ERS323819,,,,,No PCR,,,hr1@sanger.ac.uk jc17@sanger.ac.uk neh@sanger.ac.uk,jc17@sanger.ac.uk neh@sanger.ac.uk,neh@sanger.ac.uk,hr1@sanger.ac.uk,,0,0,8381745,0,Hc_10_BC4_P2_5779_340285 7809258,Haemonchus contortus,6289,S0702,714,Haemonchus contortus Ivermectin Resistance Genomics Study,standard,,5707612,from:400 to:550,ERS323819,,Haemonchus contortus,,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,,0,0,Two H. contortus ivermectin resistance strains have been backcrossed 4 times against the susceptible genome strain. Parental strains and backcross strains will be sequenced in order to identify regions of the genome linked to ivermectin resistance-conferring loci.,1697,Haemonchus contortus Ivermectin Resistance,,,Haemonchus contortus Ivermectin Resistance,, -4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell1 8215019,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351213,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, -4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell2 8215020,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351214,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, -4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell3 8215021,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351221,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, -4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell4 8215022,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351222,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, -4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell5 8215023,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351223,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, -4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell6 8215024,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351224,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, -4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell7 8215025,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351225,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, -4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell8 8215026,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351218,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, -4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell9 8215027,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351219,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, -4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell10 8215028,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351220,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, -4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell11 8215029,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351235,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, -4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell12 8215030,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351237,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, -4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell13 8215031,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351238,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, -4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell14 8215032,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351239,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, -4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell15 8215033,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351241,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, -4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell16 8215034,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351226,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, -4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell17 8215035,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351227,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, -4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell18 8215036,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351234,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, -4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell19 8215037,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351236,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, -4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell20 8215038,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351247,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, -4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell21 8215039,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351249,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, -4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell22 8215040,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351251,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, -4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell23 8215041,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351252,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, -4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell24 8215042,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351242,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, -4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell25 8215043,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351243,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, -4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell26 8215044,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351244,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, -4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell27 8215045,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351245,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, -4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell28 8215046,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351248,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, -4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell29 8215047,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351250,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, -4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell30 8215048,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351260,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, -4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell31 8215049,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351261,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, -4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell32 8215050,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351254,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, -4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell33 8215051,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351255,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, -4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell34 8215052,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351256,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, -4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell35 8215053,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351257,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, -4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell36 8215054,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351258,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, -4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell37 8215055,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351259,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, -4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell38 8215056,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351269,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, -4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell39 8215057,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351271,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, -4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell40 8215058,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351262,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, -4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell41 8215059,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351263,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, -4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell42 8215060,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351264,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, -4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell43 8215061,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351266,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, -4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell44 8215062,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351267,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, -4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell45 8215063,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351268,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, -4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell46 8215064,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351270,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, -4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell47 8215065,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351272,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, -4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell48 8215066,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351273,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, -4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell49 8215067,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351275,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, -4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell50 8215068,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351277,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, -4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell51 8215069,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351278,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, -4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell52 8215070,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351279,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, -4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell53 8215071,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351280,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, -4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell54 8215072,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351281,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, -4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell55 8215073,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351282,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, -4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell56 8215074,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351274,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, -4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell57 8215075,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351276,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, -4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell58 8215076,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351285,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, -4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell59 8215077,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351286,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, -4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell60 8215078,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351287,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, -4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell61 8215079,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351288,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, -4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell62 8215080,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351289,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, -4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell63 8215081,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351290,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, -4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell64 8215082,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351283,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, -4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell65 8215083,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351284,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, -4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell66 8215084,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351292,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, -4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell67 8215085,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351293,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, -4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell68 8215086,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351294,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, -4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell69 8215087,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351295,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, -4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell70 8215088,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351296,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, -4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell71 8215089,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351297,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, -4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell72 8215090,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351291,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, -4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell73 8215091,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351299,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, -4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell74 8215092,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351301,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, -4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell75 8215093,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351302,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, -4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell76 8215094,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351303,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, -4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell77 8215095,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351304,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, -4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell78 8215096,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351305,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, -4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell79 8215097,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351306,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, -4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell80 8215098,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351298,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, -4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell81 8215099,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351300,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, -4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell82 8215100,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351309,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, -4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell83 8215101,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351310,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, -4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell84 8215102,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351311,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, -4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell85 8215103,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351312,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, -4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell86 8215104,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351313,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, -4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell87 8215105,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351314,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, -4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell88 8215106,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351307,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, -4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell89 8215107,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351308,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, -4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell90 8215108,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351315,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, -4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell91 8215109,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351316,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, -4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell92 8215110,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351317,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, -4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell93 8215111,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351318,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, -4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell94 8215112,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351319,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, -4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell95 8215113,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351320,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, -4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,ncb@sanger.ac.uk ola@ebi.ac.uk,,ncb@sanger.ac.uk,ola@ebi.ac.uk,,0,0,,,mES_ai2_s2_cell96 8215114,mus musculus,10090,S0917,1366,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,standard,,,from:300 to:1000,ERS351321,,Mus Musculus,,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes%2C e.g. Nanog%2C in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study%2C we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum%2FLIF and 2i%2FLIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network.%0A ,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, -4,6200285,phiX_for_spiked_buffers,,ACAACGCAAT,,,,ACAACGCAAT,,hps@sanger.ac.uk,,hps@sanger.ac.uk,hps@sanger.ac.uk,,1,0,,,PhiX_PS_20120919,,,,,,standard,,,,,,,,,,,1255141,,phiX_for_spiked_buffers,,,,168,,1,0,0,None,198,Illumina Controls,,,,168, -5,8269740,EGAN00001173643,,,,,No PCR,,,cdt@sanger.ac.uk cs4@sanger.ac.uk je6@sanger.ac.uk las@sanger.ac.uk lm5@sanger.ac.uk sm2@sanger.ac.uk som@sanger.ac.uk,cdt@sanger.ac.uk je6@sanger.ac.uk las@sanger.ac.uk som@sanger.ac.uk,cdt@sanger.ac.uk cs4@sanger.ac.uk lm5@sanger.ac.uk sm2@sanger.ac.uk,sm2@sanger.ac.uk,,0,0,8381740,0,PD14393b_wg 8269740,Human,9606,S0814,1422,CGP Core Sequencing 10%2F13 to 09%2F14,standard,,5676016,from:300 to:500,EGAN00001173643,,Homo sapiens,,,,,1712041,,PD14393b_wg,PD14393b,,,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared from at least two serial samples reflecting different stages of disease progression and matched constitutional DNA for 30 Myeloproliferative Disease samples. Five lanes of Illumina HiSeq sequencing will be performed on each of the tumour samples and four lanes for each of the constitutional DNA. Sequencing data will mapped to build 37 of the human reference genome and analysis will be performed to characterize the spectrum of somatic variation present in these samples including single base pair mutations%2C insertions%2C deletions as well as larger structural variants and genomic rearrangements. ,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),,Myeloproliferative Disease Whole Genomes,, -6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_BCM1_F4 8324592,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354532,,Mus musculus,,,RNA,,1694494,,T_BCM1_F4,RT_37,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,64, -6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_BCM1_F5 8324593,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354533,,Mus musculus,,,RNA,,1694495,,T_BCM1_F5,RT_38,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,65, -6,6200285,phiX_for_spiked_buffers,,ACAACGCAAT,,,,ACAACGCAAT,,hps@sanger.ac.uk,,hps@sanger.ac.uk,hps@sanger.ac.uk,,1,0,,,PhiX_PS_20120919,,,,,,standard,,,,,,,,,,,1255141,,phiX_for_spiked_buffers,,,,168,,1,0,0,None,198,Illumina Controls,,,,168, -7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_CBF1_G4 8324594,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354534,,Mus musculus,,,RNA,,1694496,,T_CBF1_G4,RT_39,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,76, -7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_CBF1_G5 8324595,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354535,,Mus musculus,,,RNA,,1694497,,T_CBF1_G5,RT_40,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,77, -7,6200285,phiX_for_spiked_buffers,,ACAACGCAAT,,,,ACAACGCAAT,,hps@sanger.ac.uk,,hps@sanger.ac.uk,hps@sanger.ac.uk,,1,0,,,PhiX_PS_20120919,,,,,,standard,,,,,,,,,,,1255141,,phiX_for_spiked_buffers,,,,168,,1,0,0,None,198,Illumina Controls,,,,168, -8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_CBM2_H4 8324596,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354536,,Mus musculus,,,RNA,,1694498,,T_CBM2_H4,RT_41,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,88, -8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,ms27@sanger.ac.uk ncb@sanger.ac.uk,,ncb@sanger.ac.uk,ms27@sanger.ac.uk,,0,0,,,T_CBM2_H5 8324597,Mouse,10090,S1553,1238,Mouse model to quantify genotype-epigenotype variations,standard,,,from:100 to:1000,ERS354537,,Mus musculus,,,RNA,,1694499,,T_CBM2_H5,RT_42,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression%2C this study has been initiated using two inbred strains of mice%2C C57BL%2F6J and CAST%2FEij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL%2F6J and CAST%2FEij mice as well as CAST%2FBL6 and BL6%2FCAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids.%0A %0AThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),,Mouse model to quantify genotype-epigenotype variations ,89, -8,6200285,phiX_for_spiked_buffers,,ACAACGCAAT,,,,ACAACGCAAT,,hps@sanger.ac.uk,,hps@sanger.ac.uk,hps@sanger.ac.uk,,1,0,,,PhiX_PS_20120919,,,,,,standard,,,,,,,,,,,1255141,,phiX_for_spiked_buffers,,,,168,,1,0,0,None,198,Illumina Controls,,,,168, +1,7809257,ERS323818,,,,,No PCR,,,,,,,,0,0,8381746,0,7809257,Haemonchus contortus,6289,S0702,,,standard,,,from:400 to:550,ERS323818,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +2,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381744,0,7809258,Haemonchus contortus,6289,S0702,,,standard,,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +3,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381745,0,7809258,Haemonchus contortus,6289,S0702,,,standard,,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,,,,,,0,0,8381739,0,8215019,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351213,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, +4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,,,,,,0,0,8381739,0,8215020,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351214,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, +4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,,,,,,0,0,8381739,0,8215021,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351221,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, +4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,,,,,,0,0,8381739,0,8215022,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351222,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, +4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,,,,,,0,0,8381739,0,8215023,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351223,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, +4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,,,,,,0,0,8381739,0,8215024,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351224,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, +4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,,,,,,0,0,8381739,0,8215025,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351225,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, +4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,,,,,,0,0,8381739,0,8215026,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351218,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, +4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,,,,,,0,0,8381739,0,8215027,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351219,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, +4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,,,,,,0,0,8381739,0,8215028,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351220,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, +4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,,,,,,0,0,8381739,0,8215029,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351235,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, +4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,,,,,,0,0,8381739,0,8215030,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351237,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, +4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,,,,,,0,0,8381739,0,8215031,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351238,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, +4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,,,,,,0,0,8381739,0,8215032,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351239,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, +4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,,,,,,0,0,8381739,0,8215033,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351241,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, +4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,,,,,,0,0,8381739,0,8215034,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351226,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, +4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,,,,,,0,0,8381739,0,8215035,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351227,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, +4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,,,,,,0,0,8381739,0,8215036,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351234,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, +4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,,,,,,0,0,8381739,0,8215037,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351236,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, +4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,,,,,,0,0,8381739,0,8215038,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351247,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, +4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,,,,,,0,0,8381739,0,8215039,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351249,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, +4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,,,,,,0,0,8381739,0,8215040,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351251,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, +4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,,,,,,0,0,8381739,0,8215041,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351252,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, +4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,,,,,,0,0,8381739,0,8215042,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351242,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, +4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,,,,,,0,0,8381739,0,8215043,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351243,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, +4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,,,,,,0,0,8381739,0,8215044,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351244,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, +4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,,,,,,0,0,8381739,0,8215045,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351245,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, +4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,,,,,,0,0,8381739,0,8215046,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351248,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, +4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,,,,,,0,0,8381739,0,8215047,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351250,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, +4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,,,,,,0,0,8381739,0,8215048,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351260,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, +4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,,,,,,0,0,8381739,0,8215049,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351261,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, +4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,,,,,,0,0,8381739,0,8215050,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351254,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, +4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,,,,,,0,0,8381739,0,8215051,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351255,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, +4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,,,,,,0,0,8381739,0,8215052,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351256,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, +4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,,,,,,0,0,8381739,0,8215053,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351257,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, +4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,,,,,,0,0,8381739,0,8215054,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351258,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, +4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,,,,,,0,0,8381739,0,8215055,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351259,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, +4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,,,,,,0,0,8381739,0,8215056,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351269,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, +4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,,,,,,0,0,8381739,0,8215057,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351271,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, +4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,,,,,,0,0,8381739,0,8215058,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351262,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, +4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,,,,,,0,0,8381739,0,8215059,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351263,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, +4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,,,,,,0,0,8381739,0,8215060,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351264,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, +4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,,,,,,0,0,8381739,0,8215061,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351266,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, +4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,,,,,,0,0,8381739,0,8215062,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351267,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, +4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,,,,,,0,0,8381739,0,8215063,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351268,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, +4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,,,,,,0,0,8381739,0,8215064,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351270,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, +4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,,,,,,0,0,8381739,0,8215065,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351272,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, +4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,,,,,,0,0,8381739,0,8215066,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351273,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, +4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,,,,,,0,0,8381739,0,8215067,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351275,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, +4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,,,,,,0,0,8381739,0,8215068,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351277,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, +4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,,,,,,0,0,8381739,0,8215069,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351278,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, +4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,,,,,,0,0,8381739,0,8215070,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351279,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, +4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,,,,,,0,0,8381739,0,8215071,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351280,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, +4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,,,,,,0,0,8381739,0,8215072,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351281,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, +4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,,,,,,0,0,8381739,0,8215073,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351282,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, +4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,,,,,,0,0,8381739,0,8215074,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351274,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, +4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,,,,,,0,0,8381739,0,8215075,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351276,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, +4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,,,,,,0,0,8381739,0,8215076,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351285,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, +4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,,,,,,0,0,8381739,0,8215077,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351286,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, +4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,,,,,,0,0,8381739,0,8215078,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351287,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, +4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,,,,,,0,0,8381739,0,8215079,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351288,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, +4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,,,,,,0,0,8381739,0,8215080,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351289,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, +4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,,,,,,0,0,8381739,0,8215081,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351290,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, +4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,,,,,,0,0,8381739,0,8215082,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351283,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, +4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,,,,,,0,0,8381739,0,8215083,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351284,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, +4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,,,,,,0,0,8381739,0,8215084,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351292,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, +4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,,,,,,0,0,8381739,0,8215085,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351293,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, +4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,,,,,,0,0,8381739,0,8215086,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351294,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, +4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,,,,,,0,0,8381739,0,8215087,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351295,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, +4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,,,,,,0,0,8381739,0,8215088,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351296,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, +4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,,,,,,0,0,8381739,0,8215089,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351297,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, +4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,,,,,,0,0,8381739,0,8215090,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351291,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, +4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,,,,,,0,0,8381739,0,8215091,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351299,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, +4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,,,,,,0,0,8381739,0,8215092,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351301,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, +4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,,,,,,0,0,8381739,0,8215093,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351302,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, +4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,,,,,,0,0,8381739,0,8215094,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351303,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, +4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,,,,,,0,0,8381739,0,8215095,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351304,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, +4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,,,,,,0,0,8381739,0,8215096,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351305,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, +4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,,,,,,0,0,8381739,0,8215097,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351306,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, +4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,,,,,,0,0,8381739,0,8215098,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351298,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, +4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,,,,,,0,0,8381739,0,8215099,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351300,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, +4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,,,,,,0,0,8381739,0,8215100,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351309,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, +4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,,,,,,0,0,8381739,0,8215101,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351310,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, +4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,,,,,,0,0,8381739,0,8215102,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351311,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, +4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,,,,,,0,0,8381739,0,8215103,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351312,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, +4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,,,,,,0,0,8381739,0,8215104,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351313,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, +4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,,,,,,0,0,8381739,0,8215105,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351314,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, +4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,,,,,,0,0,8381739,0,8215106,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351307,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, +4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,,,,,,0,0,8381739,0,8215107,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351308,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, +4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,,,,,,0,0,8381739,0,8215108,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351315,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, +4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,,,,,,0,0,8381739,0,8215109,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351316,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, +4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,,,,,,0,0,8381739,0,8215110,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351317,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, +4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,,,,,,0,0,8381739,0,8215111,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351318,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, +4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,,,,,,0,0,8381739,0,8215112,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351319,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, +4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,,,,,,0,0,8381739,0,8215113,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351320,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, +4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,,,,,,0,0,8381739,0,8215114,mus musculus,10090,S0917,,,standard,,,from:300 to:1000,ERS351321,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, +4,6200285,6946_4_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381739,0,6200285,,,,,,standard,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +5,8269740,EGAN00001173643,,,,,No PCR,,,,,,,,0,0,8381740,0,8269740,Human,9606,S0814,,,standard,,,from:300 to:500,EGAN00001173643,,Homo sapiens,0,,,PD14393b,1712041,,PD14393b_wg,PD14393b,,,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared.,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),0,Myeloproliferative Disease Whole Genomes,, +6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,,,,,,0,0,8381741,0,8324592,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354532,,Mus musculus,0,,RNA,,1694494,,T_BCM1_F4,RT_37,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,64, +6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,,,,,,0,0,8381741,0,8324593,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354533,,Mus musculus,0,,RNA,,1694495,,T_BCM1_F5,RT_38,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,65, +6,6200285,6946_6_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381741,0,6200285,,,,,,standard,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,,,,,,0,0,8381742,0,8324594,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354534,,Mus musculus,0,,RNA,,1694496,,T_CBF1_G4,RT_39,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,76, +7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,,,,,,0,0,8381742,0,8324595,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354535,,Mus musculus,0,,RNA,,1694497,,T_CBF1_G5,RT_40,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,77, +7,6200285,6946_7_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381742,0,6200285,,,,,,standard,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,,,,,,0,0,8381743,0,8324596,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354536,,Mus musculus,0,,RNA,,1694498,,T_CBM2_H4,RT_41,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,88, +8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,,,,,,0,0,8381743,0,8324597,Mouse,10090,S1553,,,standard,,,from:100 to:1000,ERS354537,,Mus musculus,0,,RNA,,1694499,,T_CBM2_H5,RT_42,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,89, +8,6200285,6946_8_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381743,0,6200285,,,,,,standard,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, diff --git a/t/data/samplesheet/6946_extended.csv b/t/data/samplesheet/6946_extended.csv index 74765147..563f3870 100644 --- a/t/data/samplesheet/6946_extended.csv +++ b/t/data/samplesheet/6946_extended.csv @@ -1,14 +1,14 @@ [Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, Sample_ID,Sample_Name,GenomeFolder,Index,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,sp200shear 3789278,Salmonella pullorum,590,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Salmonella pullorum,,,genomic DNA,,1289832,,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,1, -3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,bp200shear 3789279,Bordetella Pertussis,520,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Bordetella Pertussis,,,genomic DNA,,1289833,,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,2, -3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,3D7200shear 3789280,Plasmodium Falciparum,5820,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Plasmodium Falciparum,,,genomic DNA,,1289834,,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,3, -3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,human200shear 3789281,Homo sapiens,9606,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Human,,,genomic DNA,,1289835,,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,4, -3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,sp300shear 3789282,Salmonella pullorum,590,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Salmonella pullorum,,,genomic DNA,,1289836,,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,5, -3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,bp300shear 3789283,Bordetella Pertussis,520,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Bordetella Pertussis,,,genomic DNA,,1289837,,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,6, -3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,3D7300shear 3789284,Plasmodium Falciparum,5820,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Plasmodium Falciparum,,,genomic DNA,,1289838,,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,7, -3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,human300shear 3789285,Homo sapiens,9606,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Human,,,genomic DNA,,1289839,,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,8, -3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,sp400shear 3789286,Salmonella pullorum,590,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Salmonella pullorum,,,genomic DNA,,1289840,,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,9, -3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,bp400shear 3789287,Bordetella Pertussis,520,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Bordetella Pertussis,,,genomic DNA,,1289841,,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,10, -3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,3D7400shear 3789288,Plasmodium Falciparum,5820,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Plasmodium Falciparum,,,genomic DNA,,1289842,,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,11, -3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,ems@sanger.ac.uk mq1@sanger.ac.uk,,ems@sanger.ac.uk mq1@sanger.ac.uk,mq1@sanger.ac.uk,,0,0,,,human400shear 3789289,Homo sapiens,9606,S0696,678,MQ R and D,standard,,,from:200 to:700,,,Human,,,genomic DNA,,1289843,,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53),,,,1,0,0,- I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. %09%09%09%09%09%0A- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage.%09%09%09%09%09%0A- In theory kapa hifi has higher fidelity than phusion.%09%09%09%09%09,700,Kapa HiFi test,,,hifi test,12, +3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,,,,,,0,0,3789299,0,3789278,Salmonella pullorum,590,S0696,,,standard,,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289832,,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,1, +3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,,,,,,0,0,3789299,0,3789279,Bordetella Pertussis,520,S0696,,,standard,,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289833,,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,2, +3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,,,,,,0,0,3789299,0,3789280,Plasmodium Falciparum,5820,S0696,,,standard,,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289834,,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,3, +3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,,,,,,0,0,3789299,0,3789281,Homo sapiens,9606,S0696,,,standard,,,from:200 to:700,,,Human,0,,genomic DNA,,1289835,,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,4, +3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,,,,,,0,0,3789299,0,3789282,Salmonella pullorum,590,S0696,,,standard,,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289836,,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,5, +3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,,,,,,0,0,3789299,0,3789283,Bordetella Pertussis,520,S0696,,,standard,,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289837,,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,6, +3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,,,,,,0,0,3789299,0,3789284,Plasmodium Falciparum,5820,S0696,,,standard,,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289838,,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,7, +3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,,,,,,0,0,3789299,0,3789285,Homo sapiens,9606,S0696,,,standard,,,from:200 to:700,,,Human,0,,genomic DNA,,1289839,,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,8, +3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,,,,,,0,0,3789299,0,3789286,Salmonella pullorum,590,S0696,,,standard,,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289840,,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,9, +3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,,,,,,0,0,3789299,0,3789287,Bordetella Pertussis,520,S0696,,,standard,,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289841,,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,10, +3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,,,,,,0,0,3789299,0,3789288,Plasmodium Falciparum,5820,S0696,,,standard,,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289842,,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,11, +3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,,,,,,0,0,3789299,0,3789289,Homo sapiens,9606,S0696,,,standard,,,from:200 to:700,,,Human,0,,genomic DNA,,1289843,,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,0,0,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,0,hifi test,12, diff --git a/t/data/samplesheet/7007_extended.csv b/t/data/samplesheet/7007_extended.csv index 00208b36..df0f87c3 100644 --- a/t/data/samplesheet/7007_extended.csv +++ b/t/data/samplesheet/7007_extended.csv @@ -1,3 +1,3 @@ [Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789277,Strongyloides ratti,,,qPCR only,,,dg8@sanger.ac.uk neh@sanger.ac.uk,,dg8@sanger.ac.uk neh@sanger.ac.uk,neh@sanger.ac.uk,,0,0,3911772,0,SriL3_66K_212889 3789277,Strongyloides ratti,34506,S0702,521,Strongyloides ratti transcriptome,standard,pass,3642560,from:300 to:400,,,Strongyloides ratti,,,,,1289830,,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,,,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat. The adult parasites are female only%2C about 2mm long and live in the mucosa of the small intestine. These parasites produce eggs that pass out of the host in its faeces. In the environment infective larval stages develop either directly or after a facultative sexual free-living adult generation. Infective larvae infect hosts by skin penetration.%0A%0AS. ratti is the laboratory analogue of the parasite of humans%2C S. stercoralis. S. stercoralis is a wide-spread parasite of humans%2C occurring principally in the tropics and sub-tropics%3A some 100-200 million people are infected worldwide. Infection of immunosuppressed individuals can result in disseminated strongyloidiasis%2C in which worms occur throughout the body. This can be fatal unless anti-Strongyloides therapy is given. Other species of Strongyloides parasitise a wide range of vertebrates. %0A%0AAs part of the Strongyloides ratti genome project we are profiling the transcriptome of the parasite across its life cycle using RNA-Seq.. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria)%2C please see http%3A%2F%2Fwww.sanger.ac.uk%2Fdatasharing%2F,521,Strongyloides ratti transcriptomics,,,Transcriptome sequencing of Strongyloides ratti,, +3789277,ERS092590,,,qPCR only,,,,,,,,0,0,3911772,0,3789277,Strongyloides ratti,34506,S0702,,,standard,,,from:300 to:400,ERS092590,,Strongyloides ratti,0,,,,1289830,,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,,ERP001672,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat.,521,Strongyloides ratti transcriptomics, ,0,Transcriptome sequencing of Strongyloides ratti,, diff --git a/t/data/samplesheet/dual_index_default_new.csv b/t/data/samplesheet/dual_index_default_new.csv new file mode 100644 index 00000000..fc4e4ec3 --- /dev/null +++ b/t/data/samplesheet/dual_index_default_new.csv @@ -0,0 +1,50 @@ +[Header],,,, +Investigator Name,mq1,,, +Project Name,ImmunoAgeing_Colonies_WGS,,, +Experiment Name,6946,,, +Date,2011-10-14T16:32:00,,, +Workflow,GenerateFASTQ,,, +Chemistry,Amplicon,,, +,,,, +[Reads],,,, +151,,,, +151,,,, +,,,, +[Settings],,,, +,,,, +[Manifests],,,, +,,,, +[Data],,,, +Sample_ID,Sample_Name,GenomeFolder,Index,Index2, +27037064,EGAN00002490956,,CGTGACAC,TTATTGCG, +27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA, +27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC, +27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA, +27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG, +27037113,EGAN00002490968,,GGCACTCA,AAGTACAG, +27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA, +27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC, +27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG, +27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA, +27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC, +27037104,EGAN00002491020,,TCCGGATT,CACAAGGA, +27037129,EGAN00002491021,,AACGACTG,GAAATTAT, +27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA, +27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT, +27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA, +27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA, +27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG, +27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC, +27037071,EGAN00002491041,,GTTTCATG,CAAACAAA, +27037083,EGAN00002491042,,AAACATCG,ACCAAAGC, +27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA, +27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC, +27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA, +27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA, +27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG, +27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA, +27037085,EGAN00002490993,,CATCCACT,CCGGTGCC, +27037086,EGAN00002491001,,CATTCTTC,TAACCGCG, +27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC, +27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG, +27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG, diff --git a/t/data/samplesheet/dual_index_extended_new.csv b/t/data/samplesheet/dual_index_extended_new.csv new file mode 100644 index 00000000..aa3e3f8c --- /dev/null +++ b/t/data/samplesheet/dual_index_extended_new.csv @@ -0,0 +1,34 @@ +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +27037064,EGAN00002490956,,CGTGACAC,TTATTGCG,,Standard,CGTGACAC,TTATTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037064,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490956,Normal,Homo sapiens,0,,,PD41305k_99,4396647,,6133STDY8786628,PD41305k_99,,PD41305k_99,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,1, +27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA,,Standard,ACTTAGAG,CTCCATAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037100,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490958,Normal,Homo sapiens,0,,,PD41305k_102,4396650,,6133STDY8786631,PD41305k_102,,PD41305k_102,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,2, +27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC,,Standard,TCAGGAAA,CCAAACCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037112,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490960,Normal,Homo sapiens,0,,,PD41305k_103,4396651,,6133STDY8786632,PD41305k_103,,PD41305k_103,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,3, +27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA,,Standard,CGTCACCA,CTTGTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037089,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490966,Normal,Homo sapiens,0,,,PD41305k_109,4396657,,6133STDY8786638,PD41305k_109,,PD41305k_109,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,4, +27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG,,Standard,GTGTTTCT,AAAGTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037101,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490967,Normal,Homo sapiens,0,,,PD41305k_110,4396658,,6133STDY8786639,PD41305k_110,,PD41305k_110,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,5, +27037113,EGAN00002490968,,GGCACTCA,AAGTACAG,,Standard,GGCACTCA,AAGTACAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037113,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490968,Normal,Homo sapiens,0,,,PD41305k_111,4396659,,6133STDY8786640,PD41305k_111,,PD41305k_111,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,6, +27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA,,Standard,GTCATCTT,GCGCGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037125,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490970,Normal,Homo sapiens,0,,,PD41305k_112,4396660,,6133STDY8786641,PD41305k_112,,PD41305k_112,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,7, +27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC,,Standard,AGAGCTTA,TATAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037090,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490973,Normal,Homo sapiens,0,,,PD41305k_117,4396665,,6133STDY8786646,PD41305k_117,,PD41305k_117,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,8, +27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG,,Standard,CTAAGTCC,TATCAAAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037114,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490976,Normal,Homo sapiens,0,,,PD41305k_119,4396667,,6133STDY8786648,PD41305k_119,,PD41305k_119,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,9, +27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA,,Standard,GATCTTGA,GTCCCGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037091,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490982,Normal,Homo sapiens,0,,,PD41305k_125,4396673,,6133STDY8786654,PD41305k_125,,PD41305k_125,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,10, +27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC,,Standard,GCGACTGA,CGCTTCAC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037056,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491016,Normal,Homo sapiens,0,,,PD41305k_130,4396678,,6133STDY8786659,PD41305k_130,,PD41305k_130,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,11, +27037104,EGAN00002491020,,TCCGGATT,CACAAGGA,,Standard,TCCGGATT,CACAAGGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037104,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491020,Normal,Homo sapiens,0,,,PD41305k_134,4396682,,6133STDY8786663,PD41305k_134,,PD41305k_134,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,12, +27037129,EGAN00002491021,,AACGACTG,GAAATTAT,,Standard,AACGACTG,GAAATTAT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037129,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491021,Normal,Homo sapiens,0,,,PD41305k_136,4396684,,6133STDY8786665,PD41305k_136,,PD41305k_136,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,13, +27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA,,Standard,CTCGTGTC,TAGAGATA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037105,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491029,Normal,Homo sapiens,0,,,PD41305k_142,4396690,,6133STDY8786671,PD41305k_142,,PD41305k_142,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,14, +27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT,,Standard,TGGCGGTC,AGCGTATT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037117,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491028,Normal,Homo sapiens,0,,,PD41305k_143,4396691,,6133STDY8786672,PD41305k_143,,PD41305k_143,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,15, +27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA,,Standard,TGATTTCC,ACTTCCGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037058,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491033,Normal,Homo sapiens,0,,,PD41305k_146,4396694,,6133STDY8786675,PD41305k_146,,PD41305k_146,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,16, +27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA,,Standard,TTTAAATG,ACGTTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037094,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491035,Normal,Homo sapiens,0,,,PD41305k_149,4396697,,6133STDY8786678,PD41305k_149,,PD41305k_149,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,17, +27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG,,Standard,ACCTGCGG,ACGCCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037106,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491037,Normal,Homo sapiens,0,,,PD41305k_150,4396698,,6133STDY8786679,PD41305k_150,,PD41305k_150,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,18, +27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC,,Standard,GACCGCAG,GGTCCCTC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037047,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491039,Normal,Homo sapiens,0,,,PD41305k_153,4396701,,6133STDY8786682,PD41305k_153,,PD41305k_153,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,19, +27037071,EGAN00002491041,,GTTTCATG,CAAACAAA,,Standard,GTTTCATG,CAAACAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037071,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491041,Normal,Homo sapiens,0,,,PD41305k_155,4396703,,6133STDY8786684,PD41305k_155,,PD41305k_155,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,20, +27037083,EGAN00002491042,,AAACATCG,ACCAAAGC,,Standard,AAACATCG,ACCAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037083,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491042,Normal,Homo sapiens,0,,,PD41305k_156,4396704,,6133STDY8786685,PD41305k_156,,PD41305k_156,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,21, +27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA,,Standard,GCTGCGCT,CCGATAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037048,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491047,Normal,Homo sapiens,0,,,PD41305k_161,4396709,,6133STDY8786690,PD41305k_161,,PD41305k_161,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,22, +27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC,,Standard,TGTCAGCT,CGCCGCCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037072,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491048,Normal,Homo sapiens,0,,,PD41305k_163,4396711,,6133STDY8786692,PD41305k_163,,PD41305k_163,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,23, +27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA,,Standard,CTCTCCGG,TGCCGGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037084,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490985,Normal,Homo sapiens,0,,,PD41305k_164,4396712,,6133STDY8786693,PD41305k_164,,PD41305k_164,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,24, +27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA,,Standard,AGAGTTAC,GATGGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037134,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490989,Normal,Homo sapiens,0,,,PD41305k_168,4396716,,6133STDY8786697,PD41305k_168,,PD41305k_168,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,25, +27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG,,Standard,CTCTTTAT,AAGCTCCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037061,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490991,Normal,Homo sapiens,0,,,PD41305k_170,4396718,,6133STDY8786699,PD41305k_170,,PD41305k_170,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,26, +27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA,,Standard,AGAGAGCC,ATAGGCAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037073,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490992,Normal,Homo sapiens,0,,,PD41305k_171,4396719,,6133STDY8786700,PD41305k_171,,PD41305k_171,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,27, +27037085,EGAN00002490993,,CATCCACT,CCGGTGCC,,Standard,CATCCACT,CCGGTGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037085,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002490993,Normal,Homo sapiens,0,,,PD41305k_172,4396720,,6133STDY8786701,PD41305k_172,,PD41305k_172,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,28, +27037086,EGAN00002491001,,CATTCTTC,TAACCGCG,,Standard,CATTCTTC,TAACCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037086,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491001,Normal,Homo sapiens,0,,,PD41305k_180,4396728,,6133STDY8786709,PD41305k_180,,PD41305k_180,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,29, +27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC,,Standard,CTCGACGT,GAAGAGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037098,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491002,Normal,Homo sapiens,0,,,PD41305k_181,4396729,,6133STDY8786710,PD41305k_181,,PD41305k_181,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,30, +27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG,,Standard,AGTTGCAA,ATCCTGAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037110,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491003,Normal,Homo sapiens,0,,,PD41305k_182,4396730,,6133STDY8786711,PD41305k_182,,PD41305k_182,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,31, +27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG,,Standard,GTAAGATG,AAAGGCTG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037051,,9606,S4360,,,standard,,,from:450 to:450,EGAN00002491009,Normal,Homo sapiens,0,,,PD41305k_185,4396733,,6133STDY8786714,PD41305k_185,,PD41305k_185,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,32, diff --git a/t/data/samplesheet/st/batches/1.xml b/t/data/samplesheet/st/batches/1.xml deleted file mode 100644 index ef9c612d..00000000 --- a/t/data/samplesheet/st/batches/1.xml +++ /dev/null @@ -1,87 +0,0 @@ - - - 1 - released - - - - - - 1 - CGATGTTT - 6 - - - AAAAAAAA - 86 - - - - - - 2 - TTAGGCAT - 6 - - - AAAAAAAA - 86 - - - - - - 3 - TGACCACT - 6 - - - AAAAAAAA - 86 - - - - - - - - - - 374 - GCTAACTC - 6 - - - GGGGGGGG - 86 - - - - - - 375 - GATTCATC - 6 - - - GGGGGGGG - 86 - - - - - - 376 - GTCTTGGC - 6 - - - GGGGGGGG - 86 - - - - - - - diff --git a/t/data/samplesheet/st/batches/13994.xml b/t/data/samplesheet/st/batches/13994.xml deleted file mode 100644 index 30f7c51c..00000000 --- a/t/data/samplesheet/st/batches/13994.xml +++ /dev/null @@ -1,107 +0,0 @@ - - - 13994 - released - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - - diff --git a/t/data/samplesheet/st/batches/14505.xml b/t/data/samplesheet/st/batches/14505.xml deleted file mode 100644 index 1a86f0a4..00000000 --- a/t/data/samplesheet/st/batches/14505.xml +++ /dev/null @@ -1,14 +0,0 @@ - - - 14505 - released - - - - - - - - - - diff --git a/t/data/samplesheet/st/batches/16537.xml b/t/data/samplesheet/st/batches/16537.xml deleted file mode 100644 index 55e97b23..00000000 --- a/t/data/samplesheet/st/batches/16537.xml +++ /dev/null @@ -1,51 +0,0 @@ - - - 16537 - released - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - - diff --git a/t/data/samplesheet/st/batches/16538.xml b/t/data/samplesheet/st/batches/16538.xml deleted file mode 100755 index 974867a5..00000000 --- a/t/data/samplesheet/st/batches/16538.xml +++ /dev/null @@ -1,51 +0,0 @@ - - - 16537 - released - - - - - - 1 - ATCACGTTATAAAAAA - 7 - - - - - - 2 - CGATGTTTATTTTTTT - 7 - - - - - - 8 - ACTTGATGATCCCCCC - 7 - - - - - - 9 - GATCAGCGATGGGGGG - 7 - - - - - - 10 - TAGCTTGTATACACGT - 7 - - - - - - - diff --git a/t/data/samplesheet/st/batches/23798.xml b/t/data/samplesheet/st/batches/23798.xml deleted file mode 100644 index 3b0c0979..00000000 --- a/t/data/samplesheet/st/batches/23798.xml +++ /dev/null @@ -1,939 +0,0 @@ - - - 23798 - started - - - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - TAAGGCGATAGATCGC - 24 - - - - - - 2 - CGTACTAGTAGATCGC - 24 - - - - - - 3 - AGGCAGAATAGATCGC - 24 - - - - - - 4 - TCCTGAGCTAGATCGC - 24 - - - - - - 5 - GGACTCCTTAGATCGC - 24 - - - - - - 6 - TAGGCATGTAGATCGC - 24 - - - - - - 7 - CTCTCTACTAGATCGC - 24 - - - - - - 8 - CAGAGAGGTAGATCGC - 24 - - - - - - 9 - GCTACGCTTAGATCGC - 24 - - - - - - 10 - CGAGGCTGTAGATCGC - 24 - - - - - - 11 - AAGAGGCATAGATCGC - 24 - - - - - - 12 - GTAGAGGATAGATCGC - 24 - - - - - - 13 - TAAGGCGACTCTCTAT - 24 - - - - - - 14 - CGTACTAGCTCTCTAT - 24 - - - - - - 15 - AGGCAGAACTCTCTAT - 24 - - - - - - 16 - TCCTGAGCCTCTCTAT - 24 - - - - - - 17 - GGACTCCTCTCTCTAT - 24 - - - - - - 18 - TAGGCATGCTCTCTAT - 24 - - - - - - 19 - CTCTCTACCTCTCTAT - 24 - - - - - - 20 - CAGAGAGGCTCTCTAT - 24 - - - - - - 21 - GCTACGCTCTCTCTAT - 24 - - - - - - 22 - CGAGGCTGCTCTCTAT - 24 - - - - - - 23 - AAGAGGCACTCTCTAT - 24 - - - - - - 24 - GTAGAGGACTCTCTAT - 24 - - - - - - 25 - TAAGGCGATATCCTCT - 24 - - - - - - 26 - CGTACTAGTATCCTCT - 24 - - - - - - 27 - AGGCAGAATATCCTCT - 24 - - - - - - 28 - TCCTGAGCTATCCTCT - 24 - - - - - - 29 - GGACTCCTTATCCTCT - 24 - - - - - - 30 - TAGGCATGTATCCTCT - 24 - - - - - - 31 - CTCTCTACTATCCTCT - 24 - - - - - - 32 - CAGAGAGGTATCCTCT - 24 - - - - - - 33 - GCTACGCTTATCCTCT - 24 - - - - - - 34 - CGAGGCTGTATCCTCT - 24 - - - - - - 35 - AAGAGGCATATCCTCT - 24 - - - - - - 36 - GTAGAGGATATCCTCT - 24 - - - - - - 37 - TAAGGCGAAGAGTAGA - 24 - - - - - - 38 - CGTACTAGAGAGTAGA - 24 - - - - - - 39 - AGGCAGAAAGAGTAGA - 24 - - - - - - 40 - TCCTGAGCAGAGTAGA - 24 - - - - - - 41 - GGACTCCTAGAGTAGA - 24 - - - - - - 42 - TAGGCATGAGAGTAGA - 24 - - - - - - 43 - CTCTCTACAGAGTAGA - 24 - - - - - - 44 - CAGAGAGGAGAGTAGA - 24 - - - - - - 45 - GCTACGCTAGAGTAGA - 24 - - - - - - 46 - CGAGGCTGAGAGTAGA - 24 - - - - - - 47 - AAGAGGCAAGAGTAGA - 24 - - - - - - 48 - GTAGAGGAAGAGTAGA - 24 - - - - - - 49 - TAAGGCGAGTAAGGAG - 24 - - - - - - 50 - CGTACTAGGTAAGGAG - 24 - - - - - - 51 - AGGCAGAAGTAAGGAG - 24 - - - - - - 52 - TCCTGAGCGTAAGGAG - 24 - - - - - - 53 - GGACTCCTGTAAGGAG - 24 - - - - - - 54 - TAGGCATGGTAAGGAG - 24 - - - - - - 55 - CTCTCTACGTAAGGAG - 24 - - - - - - 56 - CAGAGAGGGTAAGGAG - 24 - - - - - - 57 - GCTACGCTGTAAGGAG - 24 - - - - - - 58 - CGAGGCTGGTAAGGAG - 24 - - - - - - 59 - AAGAGGCAGTAAGGAG - 24 - - - - - - 60 - GTAGAGGAGTAAGGAG - 24 - - - - - - 61 - TAAGGCGAACTGCATA - 24 - - - - - - 62 - CGTACTAGACTGCATA - 24 - - - - - - 63 - AGGCAGAAACTGCATA - 24 - - - - - - 64 - TCCTGAGCACTGCATA - 24 - - - - - - 65 - GGACTCCTACTGCATA - 24 - - - - - - 66 - TAGGCATGACTGCATA - 24 - - - - - - 67 - CTCTCTACACTGCATA - 24 - - - - - - 68 - CAGAGAGGACTGCATA - 24 - - - - - - 69 - GCTACGCTACTGCATA - 24 - - - - - - 70 - CGAGGCTGACTGCATA - 24 - - - - - - 71 - AAGAGGCAACTGCATA - 24 - - - - - - 72 - GTAGAGGAACTGCATA - 24 - - - - - - 73 - TAAGGCGAAAGGAGTA - 24 - - - - - - 74 - CGTACTAGAAGGAGTA - 24 - - - - - - 75 - AGGCAGAAAAGGAGTA - 24 - - - - - - 76 - TCCTGAGCAAGGAGTA - 24 - - - - - - 77 - GGACTCCTAAGGAGTA - 24 - - - - - - 78 - TAGGCATGAAGGAGTA - 24 - - - - - - 79 - CTCTCTACAAGGAGTA - 24 - - - - - - 80 - CAGAGAGGAAGGAGTA - 24 - - - - - - 81 - GCTACGCTAAGGAGTA - 24 - - - - - - 82 - CGAGGCTGAAGGAGTA - 24 - - - - - - 83 - AAGAGGCAAAGGAGTA - 24 - - - - - - 84 - GTAGAGGAAAGGAGTA - 24 - - - - - - 85 - TAAGGCGACTAAGCCT - 24 - - - - - - 86 - CGTACTAGCTAAGCCT - 24 - - - - - - 87 - AGGCAGAACTAAGCCT - 24 - - - - - - 88 - TCCTGAGCCTAAGCCT - 24 - - - - - - 89 - GGACTCCTCTAAGCCT - 24 - - - - - - 90 - TAGGCATGCTAAGCCT - 24 - - - - - - 91 - CTCTCTACCTAAGCCT - 24 - - - - - - 92 - CAGAGAGGCTAAGCCT - 24 - - - - - - 93 - GCTACGCTCTAAGCCT - 24 - - - - - - 94 - CGAGGCTGCTAAGCCT - 24 - - - - - - 95 - AAGAGGCACTAAGCCT - 24 - - - - - - 96 - GTAGAGGACTAAGCCT - 24 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 64 - GAGATTCCTAATCTTA - 37 - - - - - - 65 - ATTCAGAATAATCTTA - 37 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 76 - GAGATTCCCAGGACGT - 37 - - - - - - 77 - ATTCAGAACAGGACGT - 37 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 88 - GAGATTCCGTACTGAC - 37 - - - - - - 89 - ATTCAGAAGTACTGAC - 37 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/samplesheet/st/projects/1238.xml b/t/data/samplesheet/st/projects/1238.xml deleted file mode 100644 index 00851b29..00000000 --- a/t/data/samplesheet/st/projects/1238.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 1238 - Mouse model to quantify genotype-epigenotype variations - true - active - - - Project cost code - S1553 - - - Funding comments - - - - Collaborators - Anne Ferguson-Smith - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - External - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/samplesheet/st/projects/1366.xml b/t/data/samplesheet/st/projects/1366.xml deleted file mode 100644 index 101d334e..00000000 --- a/t/data/samplesheet/st/projects/1366.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 1366 - Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency - true - active - - - Project cost code - S0917 - - - Funding comments - - - - Collaborators - Pentao Liu - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - Internal - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/samplesheet/st/projects/1422.xml b/t/data/samplesheet/st/projects/1422.xml deleted file mode 100644 index c301bed5..00000000 --- a/t/data/samplesheet/st/projects/1422.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 1422 - CGP Core Sequencing 10/13 to 09/14 - true - active - - - Project cost code - S0814 - - - Funding comments - - - - Collaborators - - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - Internal - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/samplesheet/st/projects/521.xml b/t/data/samplesheet/st/projects/521.xml deleted file mode 100644 index a31c6810..00000000 --- a/t/data/samplesheet/st/projects/521.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 521 - Strongyloides ratti transcriptome - true - active - - - Project cost code - S0702 - - - Funding comments - - - - Collaborators - Mark Viney - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/samplesheet/st/projects/678.xml b/t/data/samplesheet/st/projects/678.xml deleted file mode 100644 index c754ab73..00000000 --- a/t/data/samplesheet/st/projects/678.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 678 - MQ R and D - true - active - - - Project cost code - S0696 - - - Funding comments - R and D - - - Collaborators - - - - External funding source - - - - 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Cohort - - - - Reference Genome - Salmonella_pullorum (449_87) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289837.xml b/t/data/samplesheet/st/samples/1289837.xml deleted file mode 100644 index cf753bed..00000000 --- a/t/data/samplesheet/st/samples/1289837.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289837 - bp300shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - Bpst24 - - - Organism - Bordetella Pertussis - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Bordetella Pertussis - - - Public Name - Bordetella Pertussis - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - High GC - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 520 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Bordetella_pertussis (ST24) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289838.xml b/t/data/samplesheet/st/samples/1289838.xml deleted file mode 100644 index 2bd2afda..00000000 --- a/t/data/samplesheet/st/samples/1289838.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289838 - 3D7300shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - 3D7 - - - Organism - Plasmodium Falciparum - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Plasmodium Falciparum - - - Public Name - Plasmodium Falciparum - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - High AT - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 5820 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Plasmodium_falciparum (3D7) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289839.xml b/t/data/samplesheet/st/samples/1289839.xml deleted file mode 100644 index 5a62b2f5..00000000 --- a/t/data/samplesheet/st/samples/1289839.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289839 - human300shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - colo_829 - - - Organism - Homo sapiens - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Human - - - Public Name - Homo sapiens - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - Neutral - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 9606 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Homo_sapiens (GRCh37_53) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289840.xml b/t/data/samplesheet/st/samples/1289840.xml deleted file mode 100644 index 3242ca79..00000000 --- a/t/data/samplesheet/st/samples/1289840.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289840 - sp400shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - 449_87 - - - Organism - Salmonella pullorum - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Salmonella pullorum - - - Public Name - Salmonella pullorum - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - Neutral - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 590 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Salmonella_pullorum (449_87) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289841.xml b/t/data/samplesheet/st/samples/1289841.xml deleted file mode 100644 index ba26d759..00000000 --- a/t/data/samplesheet/st/samples/1289841.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289841 - bp400shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - Bpst24 - - - Organism - Bordetella Pertussis - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Bordetella Pertussis - - - Public Name - Bordetella Pertussis - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - High GC - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 520 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Bordetella_pertussis (ST24) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289842.xml b/t/data/samplesheet/st/samples/1289842.xml deleted file mode 100644 index 03e055f0..00000000 --- a/t/data/samplesheet/st/samples/1289842.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289842 - 3D7400shear - 700 - - - Age - - - - Ethnicity - - - - Subject - - - - Genotype - - - - Purification method - - - - Sample extraction method - - - - Sibling - - - - Sample Visibility - Hold - - - Sample Description - genomic DNA - - - Disease - - - - Sample type - - - - Time Point - - - - RNAi - - - - Compound - - - - Volume (µl) - - - - Sample storage conditions - - - - ENA Sample Accession Number - - - - Strain - 3D7 - - - Organism - Plasmodium Falciparum - - - Treatment - - - - Growth Condition - - - - Immunoprecipitate - - - - Dose - - - - Is re-submitted? - - - - Country of origin - - - - Organism Part - - - - Sample purified - - - - Date of sample extraction - - - - Common Name - Plasmodium Falciparum - - - Public Name - Plasmodium Falciparum - - - DNA source - Genomic - - - Mother - - - - Concentration determind by - - - - Gender - - - - GC content - High AT - - - Father - - - - Plate - - - - Disease State - - - - Developmental Stage - - - - Date of sample collection - - - - TAXON ID - 5820 - - - Replicate - - - - Cell Type - - - - Phenotype - - - - Concentration - - - - Geographical region - - - - Cohort - - - - Reference Genome - Plasmodium_falciparum (3D7) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1289843.xml b/t/data/samplesheet/st/samples/1289843.xml deleted file mode 100644 index d69233c9..00000000 --- a/t/data/samplesheet/st/samples/1289843.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1289843 - human400shear - 700 - - - Phenotype - - - - Sample purified - - - - TAXON ID - 9606 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - genomic DNA - - - ENA Sample Accession Number - - - - Common Name - Human - - - Gender - - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - Homo sapiens - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - Genomic - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - colo_829 - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Hold - - - GC content - Neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - Homo sapiens - - - Reference Genome - Homo_sapiens (GRCh37_53) - - - - - - - - - 700 - diff --git a/t/data/samplesheet/st/samples/1392234.xml b/t/data/samplesheet/st/samples/1392234.xml deleted file mode 100644 index 4bb1eac1..00000000 --- a/t/data/samplesheet/st/samples/1392234.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1392234 - PfIT_Sanger_5kb - 1980 - - - Age - - - - Sample Description - - - - Common Name - - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - - - - Strain - - - - GC content - High AT - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Reference Genome - Plasmodium_falciparum (3D7) - - - - - - - - - 1980 - diff --git a/t/data/samplesheet/st/samples/1392235.xml b/t/data/samplesheet/st/samples/1392235.xml deleted file mode 100644 index c9b644f1..00000000 --- a/t/data/samplesheet/st/samples/1392235.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1392235 - PfIT_SOLiD5500_5kb - 1980 - - - Age - - - - Sample Description - - - - Common Name - - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - - - - Strain - - - - GC content - High AT - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Reference Genome - Plasmodium_falciparum (3D7) - - - - - - - - - 1980 - diff --git a/t/data/samplesheet/st/samples/1392236.xml b/t/data/samplesheet/st/samples/1392236.xml deleted file mode 100644 index f2c05406..00000000 --- a/t/data/samplesheet/st/samples/1392236.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1392236 - PfIT_454_5kb - 1980 - - - Age - - - - Sample Description - - - - Common Name - - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - - - - Strain - - - - GC content - High AT - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Reference Genome - Plasmodium_falciparum (3D7) - - - - - - - - - 1980 - diff --git a/t/data/samplesheet/st/samples/1392237.xml b/t/data/samplesheet/st/samples/1392237.xml deleted file mode 100644 index 10f04721..00000000 --- a/t/data/samplesheet/st/samples/1392237.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1392237 - Tetse_3kb - 1980 - - - Age - - - - Sample Description - - - - Common Name - - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - - - - Strain - - - - GC content - High AT - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Reference Genome - - - - - - - - - - 1980 - diff --git a/t/data/samplesheet/st/samples/1392238.xml b/t/data/samplesheet/st/samples/1392238.xml deleted file mode 100644 index 02b0c91a..00000000 --- a/t/data/samplesheet/st/samples/1392238.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 1392238 - Mouse_test_3kb - 1980 - - - Age - - - - Sample Description - - - - Common Name - - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - - - - Strain - - - - GC content - Neutral - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 1980 - diff --git a/t/data/samplesheet/st/samples/1660679.xml b/t/data/samplesheet/st/samples/1660679.xml deleted file mode 100644 index b1cef7fb..00000000 --- a/t/data/samplesheet/st/samples/1660679.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1660679 - Hc_4_BC4_P2_5046_340285 - 1697 - false - - - Organism - Haemonchus contortus - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Mixed - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Haemonchus contortus MHco3/4.BC4(P2)-5046 - - - Common Name - Haemonchus contortus - - - Strain - MHco3/4.BC4(P2)-5046 - - - TAXON ID - 6289 - - - ENA Sample Accession Number - ERS323818 - - - Sample Description - 25-30 mixed male and female worms, strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - Haemonchus_contortus (V1_21June13) - - - - - - - - 1697 - diff --git a/t/data/samplesheet/st/samples/1660680.xml b/t/data/samplesheet/st/samples/1660680.xml deleted file mode 100644 index 9722cc04..00000000 --- a/t/data/samplesheet/st/samples/1660680.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1660680 - Hc_10_BC4_P2_5779_340285 - 1697 - false - - - Organism - Haemonchus contortus - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Mixed - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Haemonchus contortus MHco3/10.BC4(P2)-5779 - - - Common Name - Haemonchus contortus - - - Strain - MHco3/10.BC4(P2)-5779 - - - TAXON ID - 6289 - - - ENA Sample Accession Number - ERS323819 - - - Sample Description - 25-30 mixed male and female worms, strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - Haemonchus_contortus (V1_21June13) - - - - - - - - 1697 - diff --git a/t/data/samplesheet/st/samples/1694494.xml b/t/data/samplesheet/st/samples/1694494.xml deleted file mode 100644 index 5b19be0e..00000000 --- a/t/data/samplesheet/st/samples/1694494.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1694494 - T_BCM1_F4 - 2501 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - Donor Id - - - - DNA source - Genomic - - - Public Name - RT_37 - - - Common Name - Mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS354532 - - - Sample Description - RNA - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - 8 weeks - - - Developmental Stage - N/A - - - Cell Type - T cells - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - - - - - - - - - - 2501 - diff --git a/t/data/samplesheet/st/samples/1694495.xml b/t/data/samplesheet/st/samples/1694495.xml deleted file mode 100644 index 09c98a30..00000000 --- a/t/data/samplesheet/st/samples/1694495.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1694495 - T_BCM1_F5 - 2501 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - Donor Id - - - - DNA source - Genomic - - - Public Name - RT_38 - - - Common Name - Mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS354533 - - - Sample Description - RNA - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - 8 weeks - - - Developmental Stage - N/A - - - Cell Type - T cells - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - - - - - - - - - - 2501 - diff --git a/t/data/samplesheet/st/samples/1694496.xml b/t/data/samplesheet/st/samples/1694496.xml deleted file mode 100644 index e81e3ea0..00000000 --- a/t/data/samplesheet/st/samples/1694496.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1694496 - T_CBF1_G4 - 2501 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - Donor Id - - - - DNA source - Genomic - - - Public Name - RT_39 - - - Common Name - Mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS354534 - - - Sample Description - RNA - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - 8 weeks - - - Developmental Stage - N/A - - - Cell Type - T cells - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - - - - - - - - - - 2501 - diff --git a/t/data/samplesheet/st/samples/1694497.xml b/t/data/samplesheet/st/samples/1694497.xml deleted 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a/t/data/samplesheet/st/samples/1694499.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1694499 - T_CBM2_H5 - 2501 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - Donor Id - - - - DNA source - Genomic - - - Public Name - RT_42 - - - Common Name - Mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS354537 - - - Sample Description - RNA - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - 8 weeks - - - Developmental Stage - N/A - - - Cell Type - T cells - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - - - - - - - - - - 2501 - diff --git a/t/data/samplesheet/st/samples/1706390.xml b/t/data/samplesheet/st/samples/1706390.xml deleted file mode 100644 index 187d5307..00000000 --- a/t/data/samplesheet/st/samples/1706390.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706390 - mES_ai2_s2_cell1 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 1 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell1 - - - Common Name - Mus Musculus 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TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351214 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject 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made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706393.xml b/t/data/samplesheet/st/samples/1706393.xml deleted file mode 100644 index 34a5f3e2..00000000 --- a/t/data/samplesheet/st/samples/1706393.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706393 - mES_ai2_s2_cell4 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 4 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell4 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351222 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706394.xml b/t/data/samplesheet/st/samples/1706394.xml deleted file mode 100644 index bb2f4e57..00000000 --- a/t/data/samplesheet/st/samples/1706394.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706394 - mES_ai2_s2_cell5 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 5 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell5 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351223 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706395.xml b/t/data/samplesheet/st/samples/1706395.xml deleted file mode 100644 index 8d9130d0..00000000 --- a/t/data/samplesheet/st/samples/1706395.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706395 - mES_ai2_s2_cell6 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 6 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell6 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351224 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - 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Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706397.xml b/t/data/samplesheet/st/samples/1706397.xml deleted file mode 100644 index a75b66e9..00000000 --- a/t/data/samplesheet/st/samples/1706397.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706397 - mES_ai2_s2_cell8 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 8 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell8 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351218 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706398.xml b/t/data/samplesheet/st/samples/1706398.xml deleted file mode 100644 index 0759aeac..00000000 --- a/t/data/samplesheet/st/samples/1706398.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706398 - mES_ai2_s2_cell9 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 9 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell9 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351219 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706399.xml b/t/data/samplesheet/st/samples/1706399.xml deleted file mode 100644 index 93bf42c7..00000000 --- a/t/data/samplesheet/st/samples/1706399.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706399 - mES_ai2_s2_cell10 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 10 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell10 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351220 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706400.xml b/t/data/samplesheet/st/samples/1706400.xml deleted file mode 100644 index 5308e0e6..00000000 --- a/t/data/samplesheet/st/samples/1706400.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706400 - mES_ai2_s2_cell11 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 11 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell11 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351235 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706401.xml b/t/data/samplesheet/st/samples/1706401.xml deleted file mode 100644 index 2d8e7b64..00000000 --- a/t/data/samplesheet/st/samples/1706401.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706401 - mES_ai2_s2_cell12 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 12 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell12 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351237 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706402.xml b/t/data/samplesheet/st/samples/1706402.xml deleted file mode 100644 index fe3fa615..00000000 --- a/t/data/samplesheet/st/samples/1706402.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706402 - mES_ai2_s2_cell13 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 13 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell13 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351238 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706403.xml b/t/data/samplesheet/st/samples/1706403.xml deleted file mode 100644 index 179f6da4..00000000 --- a/t/data/samplesheet/st/samples/1706403.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706403 - mES_ai2_s2_cell14 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 14 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell14 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351239 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706404.xml b/t/data/samplesheet/st/samples/1706404.xml deleted file mode 100644 index 47acebe5..00000000 --- a/t/data/samplesheet/st/samples/1706404.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706404 - mES_ai2_s2_cell15 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 15 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell15 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351241 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706405.xml b/t/data/samplesheet/st/samples/1706405.xml deleted file mode 100644 index ffeabda5..00000000 --- a/t/data/samplesheet/st/samples/1706405.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706405 - mES_ai2_s2_cell16 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 16 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell16 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351226 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706406.xml b/t/data/samplesheet/st/samples/1706406.xml deleted file mode 100644 index 3b3d8653..00000000 --- a/t/data/samplesheet/st/samples/1706406.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706406 - mES_ai2_s2_cell17 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 17 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell17 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351227 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706407.xml b/t/data/samplesheet/st/samples/1706407.xml deleted file mode 100644 index 528716e1..00000000 --- a/t/data/samplesheet/st/samples/1706407.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706407 - mES_ai2_s2_cell18 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 18 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell18 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351234 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706408.xml b/t/data/samplesheet/st/samples/1706408.xml deleted file mode 100644 index 5009b1b1..00000000 --- a/t/data/samplesheet/st/samples/1706408.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706408 - mES_ai2_s2_cell19 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 19 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell19 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351236 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706409.xml b/t/data/samplesheet/st/samples/1706409.xml deleted file mode 100644 index 03e3c89e..00000000 --- a/t/data/samplesheet/st/samples/1706409.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706409 - mES_ai2_s2_cell20 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 20 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell20 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351247 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706410.xml b/t/data/samplesheet/st/samples/1706410.xml deleted file mode 100644 index 0134c889..00000000 --- a/t/data/samplesheet/st/samples/1706410.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706410 - mES_ai2_s2_cell21 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 21 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell21 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351249 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706411.xml b/t/data/samplesheet/st/samples/1706411.xml deleted file mode 100644 index 769c8431..00000000 --- a/t/data/samplesheet/st/samples/1706411.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706411 - mES_ai2_s2_cell22 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 22 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell22 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351251 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706412.xml b/t/data/samplesheet/st/samples/1706412.xml deleted file mode 100644 index fc13d974..00000000 --- a/t/data/samplesheet/st/samples/1706412.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706412 - mES_ai2_s2_cell23 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 23 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell23 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351252 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706413.xml b/t/data/samplesheet/st/samples/1706413.xml deleted file mode 100644 index a464a395..00000000 --- a/t/data/samplesheet/st/samples/1706413.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706413 - mES_ai2_s2_cell24 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 24 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell24 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351242 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706414.xml b/t/data/samplesheet/st/samples/1706414.xml deleted file mode 100644 index f200e65d..00000000 --- a/t/data/samplesheet/st/samples/1706414.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706414 - mES_ai2_s2_cell25 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 25 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell25 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351243 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706415.xml b/t/data/samplesheet/st/samples/1706415.xml deleted file mode 100644 index 5c656bcc..00000000 --- a/t/data/samplesheet/st/samples/1706415.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706415 - mES_ai2_s2_cell26 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 26 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell26 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351244 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706416.xml b/t/data/samplesheet/st/samples/1706416.xml deleted file mode 100644 index c2b364da..00000000 --- a/t/data/samplesheet/st/samples/1706416.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706416 - mES_ai2_s2_cell27 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 27 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell27 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351245 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706417.xml b/t/data/samplesheet/st/samples/1706417.xml deleted file mode 100644 index 05aee223..00000000 --- a/t/data/samplesheet/st/samples/1706417.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706417 - mES_ai2_s2_cell28 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 28 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell28 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351248 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706418.xml b/t/data/samplesheet/st/samples/1706418.xml deleted file mode 100644 index c06b3c48..00000000 --- a/t/data/samplesheet/st/samples/1706418.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706418 - mES_ai2_s2_cell29 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 29 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell29 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351250 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706419.xml b/t/data/samplesheet/st/samples/1706419.xml deleted file mode 100644 index a0d5e225..00000000 --- a/t/data/samplesheet/st/samples/1706419.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706419 - mES_ai2_s2_cell30 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 30 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell30 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351260 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706420.xml b/t/data/samplesheet/st/samples/1706420.xml deleted file mode 100644 index 98c670f0..00000000 --- a/t/data/samplesheet/st/samples/1706420.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706420 - mES_ai2_s2_cell31 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 31 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell31 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351261 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706421.xml b/t/data/samplesheet/st/samples/1706421.xml deleted file mode 100644 index 2f8138ec..00000000 --- a/t/data/samplesheet/st/samples/1706421.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706421 - mES_ai2_s2_cell32 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 32 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell32 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351254 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706422.xml b/t/data/samplesheet/st/samples/1706422.xml deleted file mode 100644 index 3330ec4a..00000000 --- a/t/data/samplesheet/st/samples/1706422.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706422 - mES_ai2_s2_cell33 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 33 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell33 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351255 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706423.xml b/t/data/samplesheet/st/samples/1706423.xml deleted file mode 100644 index 60a71a11..00000000 --- a/t/data/samplesheet/st/samples/1706423.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706423 - mES_ai2_s2_cell34 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 34 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell34 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351256 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706424.xml b/t/data/samplesheet/st/samples/1706424.xml deleted file mode 100644 index d6a94d6d..00000000 --- a/t/data/samplesheet/st/samples/1706424.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706424 - mES_ai2_s2_cell35 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 35 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell35 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351257 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706425.xml b/t/data/samplesheet/st/samples/1706425.xml deleted file mode 100644 index 1f63c1a2..00000000 --- a/t/data/samplesheet/st/samples/1706425.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706425 - mES_ai2_s2_cell36 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 36 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell36 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351258 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706426.xml b/t/data/samplesheet/st/samples/1706426.xml deleted file mode 100644 index 6d40a2e1..00000000 --- a/t/data/samplesheet/st/samples/1706426.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706426 - mES_ai2_s2_cell37 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 37 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell37 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351259 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706427.xml b/t/data/samplesheet/st/samples/1706427.xml deleted file mode 100644 index 378c6d6d..00000000 --- a/t/data/samplesheet/st/samples/1706427.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706427 - mES_ai2_s2_cell38 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 38 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell38 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351269 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706428.xml b/t/data/samplesheet/st/samples/1706428.xml deleted file mode 100644 index f5a02950..00000000 --- a/t/data/samplesheet/st/samples/1706428.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706428 - mES_ai2_s2_cell39 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 39 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell39 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351271 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706429.xml b/t/data/samplesheet/st/samples/1706429.xml deleted file mode 100644 index 8ee6a762..00000000 --- a/t/data/samplesheet/st/samples/1706429.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706429 - mES_ai2_s2_cell40 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 40 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell40 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351262 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706430.xml b/t/data/samplesheet/st/samples/1706430.xml deleted file mode 100644 index 01cee266..00000000 --- a/t/data/samplesheet/st/samples/1706430.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706430 - mES_ai2_s2_cell41 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 41 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell41 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351263 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706431.xml b/t/data/samplesheet/st/samples/1706431.xml deleted file mode 100644 index b50c083f..00000000 --- a/t/data/samplesheet/st/samples/1706431.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706431 - mES_ai2_s2_cell42 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 42 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell42 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351264 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706432.xml b/t/data/samplesheet/st/samples/1706432.xml deleted file mode 100644 index c36efe8f..00000000 --- a/t/data/samplesheet/st/samples/1706432.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706432 - mES_ai2_s2_cell43 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 43 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell43 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351266 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706433.xml b/t/data/samplesheet/st/samples/1706433.xml deleted file mode 100644 index b29ed642..00000000 --- a/t/data/samplesheet/st/samples/1706433.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706433 - mES_ai2_s2_cell44 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 44 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell44 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351267 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706434.xml b/t/data/samplesheet/st/samples/1706434.xml deleted file mode 100644 index e9c4cfbb..00000000 --- a/t/data/samplesheet/st/samples/1706434.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706434 - mES_ai2_s2_cell45 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 45 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell45 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351268 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706435.xml b/t/data/samplesheet/st/samples/1706435.xml deleted file mode 100644 index 2634c023..00000000 --- a/t/data/samplesheet/st/samples/1706435.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706435 - mES_ai2_s2_cell46 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 46 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell46 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351270 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706436.xml b/t/data/samplesheet/st/samples/1706436.xml deleted file mode 100644 index 0f73d7e9..00000000 --- a/t/data/samplesheet/st/samples/1706436.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706436 - mES_ai2_s2_cell47 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 47 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell47 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351272 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706437.xml b/t/data/samplesheet/st/samples/1706437.xml deleted file mode 100644 index 15ed24a3..00000000 --- a/t/data/samplesheet/st/samples/1706437.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706437 - mES_ai2_s2_cell48 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 48 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell48 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351273 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706438.xml b/t/data/samplesheet/st/samples/1706438.xml deleted file mode 100644 index 07d41562..00000000 --- a/t/data/samplesheet/st/samples/1706438.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706438 - mES_ai2_s2_cell49 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 49 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell49 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351275 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706439.xml b/t/data/samplesheet/st/samples/1706439.xml deleted file mode 100644 index 04c886c7..00000000 --- a/t/data/samplesheet/st/samples/1706439.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706439 - mES_ai2_s2_cell50 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 50 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell50 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351277 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706440.xml b/t/data/samplesheet/st/samples/1706440.xml deleted file mode 100644 index bd507232..00000000 --- a/t/data/samplesheet/st/samples/1706440.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706440 - mES_ai2_s2_cell51 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 51 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell51 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351278 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706441.xml b/t/data/samplesheet/st/samples/1706441.xml deleted file mode 100644 index fcef99ba..00000000 --- a/t/data/samplesheet/st/samples/1706441.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706441 - mES_ai2_s2_cell52 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 52 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell52 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351279 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706442.xml b/t/data/samplesheet/st/samples/1706442.xml deleted file mode 100644 index 60f65862..00000000 --- a/t/data/samplesheet/st/samples/1706442.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706442 - mES_ai2_s2_cell53 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 53 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell53 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351280 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date 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x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706451.xml b/t/data/samplesheet/st/samples/1706451.xml deleted file mode 100644 index 9952af75..00000000 --- a/t/data/samplesheet/st/samples/1706451.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706451 - mES_ai2_s2_cell62 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 62 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell62 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351289 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is 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a/t/data/samplesheet/st/samples/1706452.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706452 - mES_ai2_s2_cell63 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 63 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell63 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351290 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample 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cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706455.xml b/t/data/samplesheet/st/samples/1706455.xml deleted file mode 100644 index db8d2ccc..00000000 --- a/t/data/samplesheet/st/samples/1706455.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706455 - mES_ai2_s2_cell66 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 66 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell66 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351292 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706456.xml b/t/data/samplesheet/st/samples/1706456.xml deleted file mode 100644 index fde3fe6a..00000000 --- a/t/data/samplesheet/st/samples/1706456.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706456 - mES_ai2_s2_cell67 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 67 - - - GC content - Neutral - - - Gender - Male - 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- N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706457.xml b/t/data/samplesheet/st/samples/1706457.xml deleted file mode 100644 index dedfeaf5..00000000 --- a/t/data/samplesheet/st/samples/1706457.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706457 - mES_ai2_s2_cell68 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 68 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell68 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351294 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706458.xml b/t/data/samplesheet/st/samples/1706458.xml deleted file mode 100644 index be6aa1c0..00000000 --- a/t/data/samplesheet/st/samples/1706458.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706458 - mES_ai2_s2_cell69 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 69 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell69 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351295 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - 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Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706460.xml b/t/data/samplesheet/st/samples/1706460.xml deleted file mode 100644 index 194e65bb..00000000 --- a/t/data/samplesheet/st/samples/1706460.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706460 - mES_ai2_s2_cell71 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 71 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell71 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351297 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706461.xml b/t/data/samplesheet/st/samples/1706461.xml deleted file mode 100644 index d2c15a91..00000000 --- a/t/data/samplesheet/st/samples/1706461.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706461 - mES_ai2_s2_cell72 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 72 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell72 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351291 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - 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Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 74 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell74 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351301 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706464.xml b/t/data/samplesheet/st/samples/1706464.xml deleted file mode 100644 index 2cdac9cc..00000000 --- a/t/data/samplesheet/st/samples/1706464.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706464 - mES_ai2_s2_cell75 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) 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line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706466.xml b/t/data/samplesheet/st/samples/1706466.xml deleted file mode 100644 index 60165e68..00000000 --- a/t/data/samplesheet/st/samples/1706466.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706466 - mES_ai2_s2_cell77 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 77 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell77 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351304 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - 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Number - ERS351306 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference 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blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706470.xml b/t/data/samplesheet/st/samples/1706470.xml deleted file mode 100644 index 891f8f6b..00000000 --- a/t/data/samplesheet/st/samples/1706470.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706470 - mES_ai2_s2_cell81 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 81 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell81 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351300 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706471.xml b/t/data/samplesheet/st/samples/1706471.xml deleted file mode 100644 index ec28a0dd..00000000 --- a/t/data/samplesheet/st/samples/1706471.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706471 - mES_ai2_s2_cell82 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 82 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell82 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351309 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706472.xml b/t/data/samplesheet/st/samples/1706472.xml deleted file mode 100644 index a46524ba..00000000 --- a/t/data/samplesheet/st/samples/1706472.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706472 - mES_ai2_s2_cell83 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 83 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell83 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351310 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706473.xml b/t/data/samplesheet/st/samples/1706473.xml deleted file mode 100644 index 035d00c4..00000000 --- a/t/data/samplesheet/st/samples/1706473.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706473 - mES_ai2_s2_cell84 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country 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Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell86 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351313 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706476.xml b/t/data/samplesheet/st/samples/1706476.xml deleted file mode 100644 index b7536274..00000000 --- a/t/data/samplesheet/st/samples/1706476.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706476 - mES_ai2_s2_cell87 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 87 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell87 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351314 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706477.xml b/t/data/samplesheet/st/samples/1706477.xml deleted file mode 100644 index f4d903a3..00000000 --- a/t/data/samplesheet/st/samples/1706477.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706477 - mES_ai2_s2_cell88 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 88 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell88 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351307 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706478.xml b/t/data/samplesheet/st/samples/1706478.xml deleted file mode 100644 index 02aaf2c7..00000000 --- a/t/data/samplesheet/st/samples/1706478.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706478 - mES_ai2_s2_cell89 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 89 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell89 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351308 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706479.xml b/t/data/samplesheet/st/samples/1706479.xml deleted file mode 100644 index 2d781d47..00000000 --- a/t/data/samplesheet/st/samples/1706479.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706479 - mES_ai2_s2_cell90 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 90 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell90 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351315 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706480.xml b/t/data/samplesheet/st/samples/1706480.xml deleted file mode 100644 index 1a88a1b1..00000000 --- a/t/data/samplesheet/st/samples/1706480.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706480 - mES_ai2_s2_cell91 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 91 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell91 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351316 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706481.xml b/t/data/samplesheet/st/samples/1706481.xml deleted file mode 100644 index a2b2cc86..00000000 --- a/t/data/samplesheet/st/samples/1706481.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706481 - mES_ai2_s2_cell92 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 92 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell92 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351317 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706482.xml b/t/data/samplesheet/st/samples/1706482.xml deleted file mode 100644 index 0edbf6f6..00000000 --- a/t/data/samplesheet/st/samples/1706482.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706482 - mES_ai2_s2_cell93 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 93 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell93 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351318 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706483.xml b/t/data/samplesheet/st/samples/1706483.xml deleted file mode 100644 index 32e886e5..00000000 --- a/t/data/samplesheet/st/samples/1706483.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706483 - mES_ai2_s2_cell94 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 94 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell94 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351319 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706484.xml b/t/data/samplesheet/st/samples/1706484.xml deleted file mode 100644 index f71f44b1..00000000 --- a/t/data/samplesheet/st/samples/1706484.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706484 - mES_ai2_s2_cell95 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 95 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell95 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351320 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1706485.xml b/t/data/samplesheet/st/samples/1706485.xml deleted file mode 100644 index ba70ebc0..00000000 --- a/t/data/samplesheet/st/samples/1706485.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1706485 - mES_ai2_s2_cell96 - 2658 - false - - - Organism - mus musculus - - - Cohort - - - - Country of origin - N/A - - - Geographical region - N/A - - - Ethnicity - N/A - - - Volume (µl) - N/A - - - Plate - - - - Mother - 129S6/SvEvTac - - - Father - C57BL/6Ncr - - - Replicate - 96 - - - GC content - Neutral - - - Gender - Male - - - Donor Id - - - - DNA source - Cell Line - - - Public Name - mES_ai2_s2_cell96 - - - Common Name - Mus Musculus - - - Strain - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS351321 - - - Sample Description - mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - G4 ES cell line from a male blastocyst from a C57BL/6Ncr male x 129S6/SvEvTac female - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - embryonic stem cell line - - - Cell Type - ESC - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - alternative 2i/LIF - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (NCBIm37) - - - - - - - - - 2658 - diff --git a/t/data/samplesheet/st/samples/1712041.xml b/t/data/samplesheet/st/samples/1712041.xml deleted file mode 100644 index 9962fb8e..00000000 --- a/t/data/samplesheet/st/samples/1712041.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1712041 - PD14393b_wg - 2239 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD14393b - - - DNA source - Genomic - - - Public Name - PD14393b - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001173643 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - normal - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 2239 - diff --git a/t/data/samplesheet/st/studies/1697.xml b/t/data/samplesheet/st/studies/1697.xml deleted file mode 100644 index cfa8a136..00000000 --- a/t/data/samplesheet/st/studies/1697.xml +++ /dev/null @@ -1,195 +0,0 @@ - - - 1697 - Haemonchus contortus Ivermectin Resistance - true - 248 - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - jc17 - jc17@sanger.ac.uk - James Cotton - 408 - - - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - - - hr1 - hr1@sanger.ac.uk - Helen Beasley - 285 - - - - - 2010-12-07 15:59:16 +0000 - 2013-07-09 16:09:58 +0100 - - - Study description - Two H. contortus ivermectin resistance strains have been backcrossed 4 times against the susceptible genome strain. Parental strains and backcross strains will be sequenced in order to identify regions of the genome linked to ivermectin resistance-conferring loci. - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - Identification of ivermectin resistance-conferring loci by sequencing and comparing the genomes of susceptible parents, resistant parents and backcross strains. - - - Title - Haemonchus contortus Ivermectin Resistance - - - ENA Study Accession Number - ERP000430 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - open - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - false - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Whole Genome Sequencing - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Faculty Sponsor - Matthew Berriman - - - diff --git a/t/data/samplesheet/st/studies/198.xml b/t/data/samplesheet/st/studies/198.xml deleted file mode 100644 index e2ad4aad..00000000 --- a/t/data/samplesheet/st/studies/198.xml +++ /dev/null @@ -1,181 +0,0 @@ - - - 198 - Illumina Controls - true - 83 - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - 2008-11-13 13:27:48 +0000 - 2013-08-12 14:14:01 +0100 - - - Study description - None - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - - - - Title - - - - ENA Study Accession Number - - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - open - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Resequencing - - - What sort of study is this? - genotyping or cytogenetics - - - Reference Genome - - - - Faculty Sponsor - None - - - diff --git a/t/data/samplesheet/st/studies/1980.xml b/t/data/samplesheet/st/studies/1980.xml deleted file mode 100644 index 4a77b318..00000000 --- a/t/data/samplesheet/st/studies/1980.xml +++ /dev/null @@ -1,161 +0,0 @@ - - - 1980 - Mate Pair R&D - true - 519 - - - nh4 - nh4@sanger.ac.uk - Naomi Park - 519 - - - - - nh4 - nh4@sanger.ac.uk - Naomi Park - 519 - - - - - 2011-09-23 10:50:04 +0100 - 2011-09-23 11:54:53 +0100 - - - Comment regarding prevention of data release and approval - R&D - - - Alignments in BAM - true - - - Abstract - To establish a robust Mate Pair library preparation protocol - - - Study Visibility - Hold - - - SNP parent study ID - - - - Has the delay period been approved by the data sharing committee for this project? - - - - ENA Study Accession Number - - - - Number of gigabases per sample (minimum 0.15) - - - - Study description - R&D - - - Will you be using WTSI's standard access agreement? - - - - Comment regarding data release timing and approval - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - not applicable - - - EGA DAC Accession Number - - - - How is the data release to be timed? - never - - - Study name abbreviation - MPRandD - - - Has this been approved? - Yes - - - SNP study ID - - - - Delay for - - - - What is the reason for preventing data release? - data validity - - - Reason for delaying release - - - - Do any of the samples in this study contain human DNA? - No - - - ENA Project ID - 0 - - - ArrayExpress Accession Number - - - - EGA Policy Accession Number - - - - Policy - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Title - Mate Pair R&D - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Reference Genome - - - - What sort of study is this? - genomic sequencing - - - Faculty Sponsor - Harold Swerdlow - - - Study Type - Whole Genome Sequencing - - - diff --git a/t/data/samplesheet/st/studies/2239.xml b/t/data/samplesheet/st/studies/2239.xml deleted file mode 100644 index 7332de15..00000000 --- a/t/data/samplesheet/st/studies/2239.xml +++ /dev/null @@ -1,221 +0,0 @@ - - - 2239 - MPN Whole Genomes - true - 145 - - - som - som@sanger.ac.uk - Sarah OMeara - 585 - - - las - las@sanger.ac.uk - Lucy Stebbings - 21 - - - je6 - je6@sanger.ac.uk - Jyoti Evans - 658 - - - cdt - cdt@sanger.ac.uk - Calli Latimer - 175 - - - - - sm2 - sm2@sanger.ac.uk - Stuart McLaren - 145 - - - cdt - cdt@sanger.ac.uk - Calli Latimer - 175 - - - lm5 - lm5@sanger.ac.uk - Laura Mudie - 587 - - - cs4 - cs4@sanger.ac.uk - Claire Hardy - 390 - - - - - sm2 - sm2@sanger.ac.uk - Stuart McLaren - 145 - - - - - 2012-06-08 11:15:39 +0100 - 2012-11-26 14:20:33 +0000 - - - Study description - Wholegenome libraries will be prepared from at least two serial samples reflecting different stages of disease progression and matched constitutional DNA for 30 Myeloproliferative Disease samples. Five lanes of Illumina HiSeq sequencing will be performed on each of the tumour samples and four lanes for each of the constitutional DNA. Sequencing data will mapped to build 37 of the human reference genome and analysis will be performed to characterize the spectrum of somatic variation present in these samples including single base pair mutations, insertions, deletions as well as larger structural variants and genomic rearrangements. - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - PRJEB12 - - - Abstract - Cancer is driven by mutation and is typically highly heterogeneous with each tumour represented by multiple subclonal compartments each with its unique spectrum of mutation clusters. Using whole genome library preparation and massively parallel sequencing technology, we aim to the entire genome of 30 pairs of Myeloproliferative disease samples. Bespoke algorithms are being developed to identify the somatically acquired point mutations, insertions and deletions in these samples. This project will give unprecedented insights into mutational processes, cellular repair pathways and gene networks associated with Myeloproliferative disease development and disease progression. - - - Title - Myeloproliferative Disease Whole Genomes - - - ENA Study Accession Number - EGAS00001000290 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - managed - - - Will you be using WTSI's standard access agreement? - No - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - EGAC00001000010 - - - EGA Policy Accession Number - EGAP00001000037 - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - 10/050 - - - Study Type - Cancer Genomics - - - What sort of study is this? - genomic sequencing - - - Reference Genome - Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT) - - - Faculty Sponsor - Peter Campbell - - - diff --git a/t/data/samplesheet/st/studies/2501.xml b/t/data/samplesheet/st/studies/2501.xml deleted file mode 100644 index 8662a411..00000000 --- a/t/data/samplesheet/st/studies/2501.xml +++ /dev/null @@ -1,187 +0,0 @@ - - - 2501 - Mouse model to quantify genotype-epigenotype variations_RNA - true - 191 - - - ncb - ncb@sanger.ac.uk - Nathalie C Smerdon - 191 - - - - - ms27 - ms27@sanger.ac.uk - Marcela Sjoberg - 711 - - - - - 2013-01-16 13:54:59 +0000 - 2013-01-30 11:22:33 +0000 - - - Study description - In order to examine the impact of genetic variation on epigenetic marking and control of gene expression, this study has been initiated using two inbred strains of mice, C57BL/6J and CAST/Eij which genomes indicate substantial structural and nucleotide variation. Stocks of adult C57BL/6J and CAST/Eij mice as well as CAST/BL6 and BL6/CAST reciprocal hybrids are employed for isolation of pure and synchronous populations of B and T-lymphocytes. RNA-Seq expression analysis will be performed in total RNA extracted from B-lymphocytes isolated from males and females of both strains and hybrids. - -This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - Epigenetic mechanisms including non-coding RNAs are involved in the acquisition and maintenance of specific gene expression programmes during development and differentiation. Examining the extent to which DNA structural variation correlates with epigenomic and transcriptional changes is important to identify the basis of disease development, quantitative variation, adaptation and evolution. With the aim of identifying genotype-mediated epigenotype variations that account for transcriptional changes, we have used two inbred strains of mice, C57BL/6J and CAST/Eij as a model. -Pure synchronous populations of B and T-lymphocytes were isolated from males and females of both strains and reciprocal hybrids and total RNA was extracted for each sample in duplicates. Total RNA expression analysis will be performed: (1) to inspect in B lymphocytes of each strain the transcriptional programme that maintain the cellular phenotype; (2) to inspect in B lymphocytes of each strain the transcriptional programme that supress proliferation and apoptosis; (3) to look at the differential expression of various species of RNA (coding and non-coding) as a consequence of genomic variation; (3) to determine parental origin and cis/trans strain-specific effects based on the reciprocal hybrids RNA-Seq analysis. - - - - - Title - Mouse model to quantify genotype-epigenotype variations - - - ENA Study Accession Number - ERP002223 - - - Study Visibility - Public - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - open - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - delayed - - - Reason for delaying release - assay of no other use - - - Delay for - 12 months - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - E-ERAD-155 - - - Has the delay period been approved by the data sharing committee for this project? - Yes - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Transcriptome Analysis - - - What sort of study is this? - transcriptomics - - - Reference Genome - Mus_musculus (GRCm38) - - - Faculty Sponsor - David Adams - - - diff --git a/t/data/samplesheet/st/studies/2658.xml b/t/data/samplesheet/st/studies/2658.xml deleted file mode 100644 index 78e34ddf..00000000 --- a/t/data/samplesheet/st/studies/2658.xml +++ /dev/null @@ -1,185 +0,0 @@ - - - 2658 - Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency - true - 191 - - - ncb - ncb@sanger.ac.uk - Nathalie C Smerdon - 191 - - - - - ola - ola@ebi.ac.uk - Aleksandra Kolodziejczyk - 762 - - - - - 2013-06-06 21:47:20 +0100 - 2013-06-06 21:47:32 +0100 - - - Study description - This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes, e.g. Nanog, in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study, we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum/LIF and 2i/LIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network. - - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - This study aims to investigate the transcriptomic heterogeneity of mouse embryonic stem cells (mES cells) in different culturing conditions with single-cell mRNA-seq technology. Previous studies have reported heterogeneous and differential allelic expression of specific pluripotency genes, e.g. Nanog, in mES cells in different culturing conditions. The fluctuation of gene expression has been linked to drift of pluripotent state. In this study, we will dissect the transcriptome of mouse ES cells culturing in conventiaonal serum/LIF and 2i/LIF conditions at the single-cell level. The usage of a hybrid mouse ES cell line in this study provides additional insight into differential allelic expression in these two culturing conditions. The data generated in this study will shed light on the regulation of pluripotency network. - - - - - Title - Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency - - - ENA Study Accession Number - ERP003293 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - open - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - E-ERAD-186 - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - 1.0 - - - HMDMC approval number - - - - Study Type - Transcriptome Analysis - - - What sort of study is this? - transcriptomics - - - Reference Genome - Mus_musculus (NCBIm37) - - - Faculty Sponsor - Sarah Teichmann - - - diff --git a/t/data/samplesheet/st/studies/521.xml b/t/data/samplesheet/st/studies/521.xml deleted file mode 100644 index 50715a37..00000000 --- a/t/data/samplesheet/st/studies/521.xml +++ /dev/null @@ -1,171 +0,0 @@ - - - 521 - Strongyloides ratti transcriptomics - true - 143 - - - dg8 - dg8@sanger.ac.uk - Daria Gordon - 403 - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - - - 2010-04-06 17:05:29 +0100 - 2010-09-17 13:53:35 +0100 - - - EGA Policy Accession Number - - - - Abstract - Transcriptome sequencing of Strongyloides ratti - - - Number of gigabases per sample (minimum 0.15) - - - - Comment regarding prevention of data release and approval - - - - What is the reason for preventing data release? - - - - Policy - - - - Alignments in BAM - true - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - EGA DAC Accession Number - - - - Delay for - - - - Study description - Strongyloides ratti is a common gastro-intestinal parasite of the rat. The adult parasites are female only, about 2mm long and live in the mucosa of the small intestine. These parasites produce eggs that pass out of the host in its faeces. In the environment infective larval stages develop either directly or after a facultative sexual free-living adult generation. Infective larvae infect hosts by skin penetration. - -S. ratti is the laboratory analogue of the parasite of humans, S. stercoralis. S. stercoralis is a wide-spread parasite of humans, occurring principally in the tropics and sub-tropics: some 100-200 million people are infected worldwide. Infection of immunosuppressed individuals can result in disseminated strongyloidiasis, in which worms occur throughout the body. This can be fatal unless anti-Strongyloides therapy is given. Other species of Strongyloides parasitise a wide range of vertebrates. - -As part of the Strongyloides ratti genome project we are profiling the transcriptome of the parasite across its life cycle using RNA-Seq.. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - How is the data release to be timed? - standard - - - Study name abbreviation - - - - ENA Study Accession Number - - - - Title - Transcriptome sequencing of Strongyloides ratti - - - SNP study ID - - - - What is the data release strategy for this study? - open - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - Study Visibility - hold - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - ArrayExpress Accession Number - - - - Reason for delaying release - - - - ENA Project ID - - - - SNP parent study ID - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Comment regarding data release timing and approval - - - - Will you be using WTSI's standard access agreement? - - - - Study Type - Transcriptome Analysis - - - What sort of study is this? - transcriptomics - - - Faculty Sponsor - Matt Berriman - - - Reference Genome - - - - diff --git a/t/data/samplesheet/st/studies/700.xml b/t/data/samplesheet/st/studies/700.xml deleted file mode 100644 index 717cba9c..00000000 --- a/t/data/samplesheet/st/studies/700.xml +++ /dev/null @@ -1,175 +0,0 @@ - - - 700 - Kapa HiFi test - true - 7 - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - ems - ems@sanger.ac.uk - Elizabeth Sheridan - 72 - - - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - - - 2010-10-07 16:11:00 +0100 - 2010-10-21 11:03:52 +0100 - - - Number of gigabases per sample (minimum 0.15) - - - - Has this been approved? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - ENA Study Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - ArrayExpress Accession Number - - - - Title - hifi test - - - ENA Project ID - 0 - - - What is the data release strategy for this study? - not applicable - - - Study Visibility - Hold - - - EGA Policy Accession Number - - - - Study name abbreviation - - - - SNP study ID - - - - What is the reason for preventing data release? - data validity - - - Has the delay period been approved by the data sharing committee for this project? - - - - Do any of the samples in this study contain human DNA? - No - - - Abstract - Purpose of experiment - -- To evaluate kapa hifi qPCR kit -- To evaluate kapa hifi and "robust" enzymes as alternatives to phusion. How do libraries prepared with these enzymes compare in terms of fidelity and coverage? -- To generate data on test genomes that can be used in Pacbio data analysis - - - - Study description - - I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. -- If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage. -- In theory kapa hifi has higher fidelity than phusion. - - - - Alignments in BAM - true - - - Will you be using WTSI's standard access agreement? - - - - Comment regarding prevention of data release and approval - R+D Project - - - EGA DAC Accession Number - - - - Policy - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Reason for delaying release - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - Delay for - - - - How is the data release to be timed? - never - - - Reference Genome - - - - What sort of study is this? - genomic sequencing - - - Faculty Sponsor - Harold Swerdlow - - - Study Type - Whole Genome Sequencing - - -