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Current version : 3.2 - 19/09/2018

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Current version : 3.2 - 03/07/2019

Publication: Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, Mélanie Pétéra, Christophe Duperier, Marie Tremblay-Franco, Jean-François Martin, Daniel Jacob, Sophie Goulitquer, Etienne A. Thévenot and Christophe Caron (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics doi:10.1093/bioinformatics/btu813

Help and support: support@workflow4metabolomics.org
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Latest news

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Tutorials

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HOW TO

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CATEGORYFIELDDescriptionPDF
Galaxy Prepare input datasetsDownload
Galaxy Import datasetsDownload
Galaxy Cleanup datasetsDownload
Galaxy Build And Configure A WorkflowDownload
Galaxy Share Histories And WorkflowsDownload
PreprocessingLC-MSPerform Preprocessing using XCMSDownload
Quality ControlCommonFormat Data For PostprocessingDownload
Batch correctionLC-MS and GC-MSPerform Drift And Batch CorrectionDownload
StatisticsCommonPerform Univariate AnalyzesDownload
StatisticsCommonPerform Multivariate AnalyzesDownload
AnnotationLC-MSPerform LCMS AnnotationsDownload
AnnotationGC-MSUse NISTDownload
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Use single files as input and run xcmsSet in parallel
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W4M courses 2015

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W4M courses 2015Author(s)PDF
Course presentationChristophe Caron, Franck GiacomoniDownload
InitiationGildas Le Corguillé, Misharl Monsoor, Marion LandiDownload
LC-MS - Pre-processing (xcms)W4M Core TeamDownload
MS data processing - Filtering and correcting dataW4M Core TeamDownload
Using Galaxy4Metabolomics - W4M table format for GalaxyW4M Core TeamDownload
How to check the format of the 3 .tsv tablesEtienne ThévenotDownload
How to perform statistical analysis ? - IntroductionEtienne Thévenot, Marie Tremblay-Franco, Mélanie Pétéra, Gildas Le CorguilléDownload
How to perform statistical analysis ? - Exploratory data analysisEtienne Thévenot, Mélanie Pétéra, Jean-François Martin, Gildas Le CorguilléDownload
How to perform statistical analysis ? - PCA analysis and (O)PLS(-DA) modellingEtienne ThévenotDownload
Les banques d'annotation - AnnotationYann Guitton, Franck GiacomoniDownload

 

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diff --git a/tool_list.yaml b/tool_list.yaml index b707fc9..cc135fc 100644 --- a/tool_list.yaml +++ b/tool_list.yaml @@ -3,7 +3,7 @@ api_key: admin galaxy_instance: http://127.0.0.1:8080/ install_repository_dependencies: true -install_resolver_dependencies: true +install_resolver_dependencies: false install_tool_dependencies: false tools: @@ -72,7 +72,12 @@ tools: owner: yguitton tool_panel_section_id: 'preprocessing_GCMS' revisions: - - 'c75532b75ba1' # v2.1.1 + - 'c10824185547' # v3.0.0 +- name: metams_plot + owner: workflow4metabolomics + tool_panel_section_id: 'preprocessing_GCMS' + revisions: + - 'b60dc620bd14' # v1.0.0 ## NMR - name: nmr_preprocessing @@ -132,7 +137,7 @@ tools: owner: ethevenot tool_panel_section_id: 'statistics_ALL' revisions: - - '526f8258e8a' # v2.3.10 + - '5526f8258e8a' # v2.3.10 - name: anova owner: lecorguille tool_panel_section_id: 'statistics_ALL'