Error: your population names do not match your SNP matrix

[cgraham13]

I am having issues with the MakeDiploidFSTMat() function. I am keep getting the above error even though the numbers seem to line up in my files. I generated the .geno file in PGDSpider. I have the same number of individuals in the .ind file as columns in the SNPmat and loci in the .snp file as rows.

Im sure it's something dumb I am missing but would love some help!

This is the code I have been using:

SNPmat <- read.table("LocalAdaptation-m3M1n1r50-SK-Ecozones-v2.txt", header=FALSE)

ind <- read.table("LocalAdaptation-m3M1n1r50-SK-Ecozones-ind.txt", header = FALSE)

locus <- read.table("LocalAdaptation-m3M1n1r50-SK-Ecozones-snp.txt", header = FALSE)

MakeDiploidFSTMat(SNPmat = SNPmat,
locusNames = locus$V1,
popNames = ind$V3

I have attached the files as well.

Thanks in advance!

LocalAdaptation-m3M1n1r50-SK-Ecozones-snp.txt
LocalAdaptation-m3M1n1r50-SK-Ecozones-ind.txt
LocalAdaptation-m3M1n1r50-SK-Ecozones-v2.txt