Merge pull request #20 from weecology/singularity-env

Source token before singularity
weecology · Nov 20, 2024 · c449534 · c449534
2 parents 52a4cf5 + 2e247dd
commit c449534
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diff --git a/portal_dryrun_forecast.sh b/portal_dryrun_forecast.sh
@@ -12,6 +12,8 @@
 echo "INFO: [$(date "+%Y-%m-%d %H:%M:%S")] Starting Weekly Forecast on $(hostname) in $(pwd)"
 cd /orange/ewhite/PortalForecasts/
 
+source /blue/ewhite/hpc_maintenance/githubdeploytoken.txt
+
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Loading required modules"
 source /etc/profile.d/modules.sh
 module load git R singularity

diff --git a/portal_weekly_forecast.sh b/portal_weekly_forecast.sh
@@ -12,6 +12,8 @@
 echo "INFO: [$(date "+%Y-%m-%d %H:%M:%S")] Starting Weekly Forecast on $(hostname) in $(pwd)"
 cd /orange/ewhite/PortalForecasts/
 
+source /blue/ewhite/hpc_maintenance/githubdeploytoken.txt
+
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Loading required modules"
 source /etc/profile.d/modules.sh
 module load git R singularity