FFT + Time Reversal Reconstruction #2809
Workflow file for this run
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name: pytest | |
on: [push, pull_request] | |
jobs: | |
collect_references: | |
name: collect_references | |
outputs: | |
MATLAB_REFS_HASH: ${{ steps.matlab-refs-hash.outputs.MATLAB_REFS_HASH }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: checkout repository | |
uses: actions/checkout@v4 | |
with: | |
path: k-Wave-python | |
# Calculate hash value that will be used as a cache key | |
- name: Calculate matlab references hash | |
id: matlab-refs-hash | |
run: | | |
MATLAB_REFS_HASH=$(find ./k-Wave-python/tests/matlab_test_data_collectors/matlab_collectors -type f | xargs sha1sum | sha1sum | awk '{ print $1 }'); | |
echo "MATLAB_REFS_HASH=$MATLAB_REFS_HASH" >> $GITHUB_OUTPUT | |
# Pull cache if exists, otherwise cache will be created at the specified path | |
- name: Cache collected references | |
uses: actions/cache@v3 | |
id: matlab-refs-cache | |
env: | |
cache-name: cache-matlab-references | |
with: | |
key: ${{ steps.matlab-refs-hash.outputs.MATLAB_REFS_HASH }} | |
path: ./collectedValues.tar.gz | |
- name: Checkout reference k-Wave repo | |
uses: actions/checkout@v4 | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
with: | |
repository: ucl-bug/k-wave | |
path: k-wave | |
ref: v1.4.0 | |
- name: setup MATLAB | |
uses: matlab-actions/setup-matlab@v1 | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
- name: run reference generation | |
uses: matlab-actions/run-command@v1 | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
with: | |
command: | | |
ls; | |
pwd; | |
if exist('k-wave/k-Wave'); ls 'k-wave/k-Wave'; end; | |
addpath('k-Wave-python','k-wave/k-Wave'); | |
cd k-Wave-python/tests/matlab_test_data_collectors; | |
run_all_collectors; | |
- name: Compress generated references | |
uses: a7ul/[email protected] | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
with: | |
command: c | |
cwd: ./k-Wave-python/tests/matlab_test_data_collectors/matlab_collectors/ | |
files: | | |
./collectedValues | |
outPath: collectedValues.tar.gz | |
- name: upload reference values artifact | |
id: artifact-upload-step | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
uses: actions/upload-artifact@v4 | |
with: | |
name: matlab_reference_test_values | |
path: collectedValues.tar.gz | |
# overwrite: true | |
- name: Output artifact URL | |
if: ${{ steps.matlab-refs-cache.outputs.cache-hit != 'true' }} | |
run: echo 'Artifact URL is ${{ steps.artifact-upload-step.outputs.artifact-url }}' | |
test: | |
needs: collect_references | |
strategy: | |
matrix: | |
os: [ "windows-latest", "ubuntu-latest" , "macos-latest"] | |
python-version: [ "3.10", "3.11", "3.12", "3.13" ] | |
runs-on: ${{matrix.os}} | |
steps: | |
- uses: actions/checkout@v4 | |
# Pull the cache based on the hash value | |
- name: Cache collected references | |
uses: actions/cache@v3 | |
id: cache-matlab-refs | |
env: | |
cache-name: cache-matlab-references | |
with: | |
key: ${{ needs.collect_references.outputs.MATLAB_REFS_HASH }} | |
path: ./collectedValues.tar.gz | |
fail-on-cache-miss: true | |
enableCrossOsArchive: true | |
# Now we have the references archive available in this job, proceed by unpacking it | |
- name: unpack collectedValues | |
uses: a7ul/[email protected] | |
with: | |
command: x | |
cwd: ./tests/matlab_test_data_collectors/python_testers/ | |
files: ${{github.workspace}}/collectedValues.tar.gz | |
- name: where are the files? | |
run: | | |
ls ./tests/matlab_test_data_collectors/python_testers/ | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
- name: Install dependencies | |
run: | | |
pip install '.[test]' | |
- name: Test with pytest | |
run: | | |
coverage run | |
- name: Create coverage report | |
run: | | |
coverage xml | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
env_vars: ${{matrix.os}},${{ matrix.python-version }} | |
fail_ci_if_error: true | |
flags: ${{matrix.os}},${{ matrix.python-version }} | |
name: ${{matrix.os}},${{ matrix.python-version }} | |
verbose: true | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |