diff --git a/235_singleM/polars/polars_cargopython.eb b/235_singleM/polars/polars_cargopython.eb index 862c9dd6..551a1fb3 100644 --- a/235_singleM/polars/polars_cargopython.eb +++ b/235_singleM/polars/polars_cargopython.eb @@ -26,7 +26,7 @@ dependencies = [ ] # installopts = 'rustup update -- nightly' -prebuildopts = 'rustup update -- nightly && ' +# prebuildopts = 'rustup update -- nightly && ' exts_list = [ ('plot', '0.6.5', { diff --git a/278_FFAVES/FFAVES.eb b/278_FFAVES/FFAVES.eb deleted file mode 100644 index 10782f1c..00000000 --- a/278_FFAVES/FFAVES.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'FFAVES' -version = '2022.11.1' -local_commit = '2c1fa89' - -homepage = 'https://github.com/aradley/FFAVES' -description = """Functional Feature Amplification Via Entropy Sorting (FFAVES). -Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner. -By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed, -we can identify a subset of genes more predictive of different cell types. -The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW), -to create a ranked list of genes that are most likely to pertain to distinct -sub-populations of cells in an scRNA-seq dataset. -""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('dill', '0.3.8', { - 'checksums': ['3ebe3c479ad625c4553aca177444d89b486b1d84982eeacded644afc0cf797ca'], - }), - ('multiprocess', '0.70.12.2', { - 'source_tmpl': 'multiprocess-%(version)s.zip', - 'checksums': ['206bb9b97b73f87fec1ed15a19f8762950256aa84225450abc7150d02855a083'], - }), - (name, version, { - 'source_urls': ['https://github.com/aradley/FFAVES/archive/'], - 'sources': [{'download_filename': '2c1fa89.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], - # numpy and scipy requirements are too strict, it can not be combinated with toolchain and SciPy-bundle - 'preinstallopts': "sed -i 's/numpy==/numpy>=/;s/scipy==/scipy>=/' requirements.txt && ", - 'checksums': ['b833cc26cc60ad44c48d1b5712ce32b0ceb7f8d7876c06466514f79d357e4f83'], - }), -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['ffaves.py', 'get_gprof', 'get_objgraph', 'undill']], - 'dirs': ['lib/python%(pyshortver)s/site-packages/'], -} - -moduleclass = 'bio'