From 45e4cf717eb075a082c0efea068b947cd5e2110f Mon Sep 17 00:00:00 2001 From: Pavel Tomanek Date: Mon, 3 Jun 2024 10:21:20 +0200 Subject: [PATCH] #336 cleanup --- 336_Atropos/atropos.eb | 57 ------------------------------------------ 1 file changed, 57 deletions(-) delete mode 100644 336_Atropos/atropos.eb diff --git a/336_Atropos/atropos.eb b/336_Atropos/atropos.eb deleted file mode 100644 index dddac86e..00000000 --- a/336_Atropos/atropos.eb +++ /dev/null @@ -1,57 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'atropos' -version = '1.1.32' - -homepage = 'https://atropos.readthedocs.io' -description = "Atropos is tool for specific, sensitive, and speedy trimming of NGS reads." - -toolchain = {'name': 'gompi', 'version': '2023a'} - -dependencies = [ - ('Python', '3.11.3'), - ('Python-bundle-PyPI', '2023.06'), - ('tqdm', '4.66.1'), - ('Pysam', '0.22.0'), - ('pytest', '7.4.2'), - ('SRA-Toolkit', '3.0.10'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('versioneer', '0.29', { - 'checksums': ['5ab283b9857211d61b53318b7c792cf68e798e765ee17c27ade9f6c924235731'], - }), - ('screed', '1.1.3', { - 'checksums': ['37e81697c7dba95a053554e5b5a86aff329705e1cf5dfc5e7b8da586dee072b8'], - }), - ('bz2file', '0.98', { - 'checksums': ['64c1f811e31556ba9931953c8ec7b397488726c63e09a4c67004f43bdd28da88'], - }), - ('khmer', '2.1.1', { - 'checksums': ['a709606910bb8679bd8525e9d2bf6d1421996272e343b54cc18090feb2fdbe24'], - }), - ('pokrok', '0.2.0', { - 'checksums': ['cfe7956602d8bbc142a07bcb259e0d1d939f96d7b074e00dceea3cb5e39244e8'], - }), - ('xphyle', '4.0.5', { - 'checksums': ['b744723a3c88d81318c7291c32682b8715a046f70d0a1db729bda783fd5e08bd'], - }), - ('srastream', '0.1.3', { - 'checksums': ['7f2cfd76ae988349ad5407a952cd4c133ae5dff7cf12c76072c53d82b50c2634'], - }), - (name, version, { - 'checksums': ['17e9dc3d76d7a2ca607a12da191a6d7ba1cfbd1a8c924215870417f85858fd83'], - }), -] - -sanity_check_paths = { - 'files': ['bin/atropos'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = ["atropos detect --help"] - -moduleclass = 'bio'