From 18b422b155a59a618c6d503bc8da5384fafff40a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Petr=20Kr=C3=A1l?= Date: Thu, 16 May 2024 13:39:41 +0200 Subject: [PATCH] Big cleanup for closed tickets #102 #117 #119 #134 #136 #184 #187 #196 #208 #245 #263 #280 #33 #38 #45 #53 #87 #99 --- 102_krakenuniq/easybuild-run_cmd-aosbb5qf.log | 14 - 102_krakenuniq/krakenuniq.eb | 34 - .../old_logz/easybuild-run_cmd-7ldm4tf6.log | 8 - .../old_logz/easybuild-run_cmd-db_n0uhm.log | 3 - .../old_logz/easybuild-run_cmd-drdt9r9q.log | 3 - 102_krakenuniq/old_logz/k.log | 0 117_dice/dice.eb | 63 - 117_dice/easybuild-run_cmd-v4rxvqn1.log | 9280 -------------- .../old_logz/easybuild-run_cmd-s0as20e8.log | 59 - 117_dice/old_logz/l.log | 0 119_PopGen/PopGen.eb | 52 - ...qlclient-1.4.6-foss-2021b-Python-2.7.18.eb | 25 - 134_GapFiller/GapFiller.eb | 35 - .../CmdStanR-0.5.2-foss-2022a-R-4.2.1.eb | 32 - 184_zarr/zarr-2.16.0-foss-2022b.eb | 43 - ...le-Bioconductor-3.16-foss-2022b-R-4.2.2.eb | 1265 -- 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33_scib_pipeline/trvaep.eb delete mode 100644 38_EpiNano/EpiNano.eb delete mode 100644 38_EpiNano/VBZ-Compression-1.0.2-gompi-2021b.eb delete mode 100644 38_EpiNano/nanopolish-0.14.0-foss-2021b.eb delete mode 100644 45_IJulia/IJulia-1.23.3-Julia-1.6.3-git.eb delete mode 100644 45_IJulia/IJulia-1.23.3-Julia-1.6.3.eb delete mode 100644 45_IJulia/juliapackage.py delete mode 100644 53_DIA-DN/DIA-NN.eb delete mode 100644 87_Slicer/Slicer.eb delete mode 100644 99_Q-Chem/Q-Chem-6.0.2.eb diff --git a/102_krakenuniq/easybuild-run_cmd-aosbb5qf.log b/102_krakenuniq/easybuild-run_cmd-aosbb5qf.log deleted file mode 100644 index 2bad7783..00000000 --- a/102_krakenuniq/easybuild-run_cmd-aosbb5qf.log +++ /dev/null @@ -1,14 +0,0 @@ -# output for command: ./install_krakenuniq.sh --help - -./install_krakenuniq.sh: illegal option -- - -Incorrect options provided. Usage: install_krakenuniq.sh [OPTIONS] INSTALL_DIR - -OPTIONS: - -l BIN_DIR Link KrakenUniq executables to BIN_DIR, e.g /usr/local/bin or ~/bin. - -j Install jellyfish v1.1 in INSTALL_DIR. - -c BIN Use compiler BIN instead of g++. - -g Add debug info - -h This help message - -On MacOS, if you experience the error "clang: fatal error: unsupported option '-fopenmp'" on OSX, try installing g++ with brew, and using the option "-c g++-7". - diff --git a/102_krakenuniq/krakenuniq.eb b/102_krakenuniq/krakenuniq.eb deleted file mode 100644 index d742f03d..00000000 --- a/102_krakenuniq/krakenuniq.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'Binary' - -name = 'KrakenUniq' -version = '1.0.3' - -homepage = 'https://github.com/fbreitwieser/krakenuniq/' -description = """KrakenUniq: confident and fast metagenomics classification using unique k-mer counts""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -github_account = 'fbreitwieser' -source_urls = [GITHUB_SOURCE] -sources = ['v%(version)s.tar.gz'] -checksums = ['559b45081688118b4872e1b9153f83d0ae3414649a1b299ab4f9996d9e154403'] - -dependencies = [ - ('Jellyfish', '2.3.0'), - ('bzip2', '1.0.8'), -] - -extract_sources = True - -install_cmd = './install_krakenuniq.sh -l %(installdir)s/bin %(installdir)s ' - -sanity_check_commands = [ - 'krakenuniq --version', - 'krakenuniq-download --db %(installdir)s/DBDIR taxonomy && rm -r %(installdir)s/DBDIR' -] -sanity_check_paths = { - 'files': ['bin/krakenuniq', 'bin/krakenuniq-build', 'bin/krakenuniq-report'], - 'dirs': ['bin'], -} - -moduleclass = 'bio' diff --git a/102_krakenuniq/old_logz/easybuild-run_cmd-7ldm4tf6.log b/102_krakenuniq/old_logz/easybuild-run_cmd-7ldm4tf6.log deleted file mode 100644 index 0bdbad6d..00000000 --- a/102_krakenuniq/old_logz/easybuild-run_cmd-7ldm4tf6.log +++ /dev/null @@ -1,8 +0,0 @@ -# output for command: autoreconf -i && ./configure --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Jellyfish/1.1.12-intel-2022a - -configure.ac:8: error: AC_CONFIG_MACRO_DIR can only be used once -./lib/autoconf/general.m4:1970: AC_CONFIG_MACRO_DIR is expanded from... -configure.ac:8: the top level -autom4te: error: /apps/gent/RHEL8/haswell-ib/software/M4/1.4.19-GCCcore-11.3.0/bin/m4 failed with exit status: 1 -aclocal: error: /apps/gent/RHEL8/haswell-ib/software/Autoconf/2.71-GCCcore-11.3.0/bin/autom4te failed with exit status: 1 -autoreconf: error: aclocal failed with exit status: 1 diff --git a/102_krakenuniq/old_logz/easybuild-run_cmd-db_n0uhm.log b/102_krakenuniq/old_logz/easybuild-run_cmd-db_n0uhm.log deleted file mode 100644 index eb5f33cc..00000000 --- a/102_krakenuniq/old_logz/easybuild-run_cmd-db_n0uhm.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: ./install_krakenuniq -s - -/bin/bash: ./install_krakenuniq: No such file or directory diff --git a/102_krakenuniq/old_logz/easybuild-run_cmd-drdt9r9q.log b/102_krakenuniq/old_logz/easybuild-run_cmd-drdt9r9q.log deleted file mode 100644 index bae04be5..00000000 --- a/102_krakenuniq/old_logz/easybuild-run_cmd-drdt9r9q.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: ./configure --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Jellyfish/1.1.12-foss-2022a - -/bin/bash: ./configure: No such file or directory diff --git a/102_krakenuniq/old_logz/k.log b/102_krakenuniq/old_logz/k.log deleted file mode 100644 index e69de29b..00000000 diff --git a/117_dice/dice.eb b/117_dice/dice.eb deleted file mode 100644 index adcd2c42..00000000 --- a/117_dice/dice.eb +++ /dev/null @@ -1,63 +0,0 @@ -# author: Denis Kristak (Inuits) -easyblock = 'PythonBundle' - -name = 'dice-ml' -version = '0.9' - -homepage = 'https://interpret.ml/DiCE/' -description = """Diverse Counterfactual Explanations (DiCE) for ML""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('scikit-learn', '1.1.2'), - ('tqdm', '4.64.0'), - ('TensorFlow', '2.11.0'), -] - -use_pip = True - -local_hatchling_preinstallopts = "sed -i 's|packaging>=21.3|packaging>=20.9|g' PKG-INFO && " -local_hatchling_preinstallopts += "sed -i 's|packaging>=21.3|packaging>=20.9|g' src/hatchling/ouroboros.py && " - -exts_list = [ - ('pathspec', '0.10.1', { - 'checksums': ['7ace6161b621d31e7902eb6b5ae148d12cfd23f4a249b9ffb6b9fee12084323d'], - }), - ('hatchling', '1.11.1', { - 'preinstallopts': local_hatchling_preinstallopts, - 'checksums': ['9f84361f70cf3a7ab9543b0c3ecc64211ed2ba8a606a71eb6a473c1c9b08e1d0'], - }), - ('hatch-fancy-pypi-readme', '22.8.0', { - 'sources': [{ - 'download_filename': 'hatch_fancy_pypi_readme-%(version)s.tar.gz', - 'filename': '%(name)s-%(version)s.tar.gz' - }], - 'checksums': ['da91282ca09601c18aded8e378daf8b578c70214866f0971156ee9bb9ce6c26a'], - }), - ('hatch-vcs', '0.3.0', { - 'sources': [{'download_filename': 'hatch_vcs-%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], - 'checksums': ['cec5107cfce482c67f8bc96f18bbc320c9aa0d068180e14ad317bbee5a153fee'], - }), - ('jsonschema', '4.17.3', { - 'checksums': ['0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d'], - }), - ('raiutils', '0.4.0', { - 'checksums': ['1686dfae2ed59ccadb69ce5957b753be352ead42e87559c24223c3dfd055b703'], - }), - (name, version, { - 'sources': ['dice_ml-%(version)s.tar.gz'], - 'checksums': ['0c4c2cb57f2218ba324ef2931304ab42f5f685759688a5898b0eb85b7a25b97a'], - }), -] - -sanity_pip_check = True - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/dice_ml'] -} - -moduleclass = 'ai' diff --git a/117_dice/easybuild-run_cmd-v4rxvqn1.log b/117_dice/easybuild-run_cmd-v4rxvqn1.log deleted file mode 100644 index dc0f074d..00000000 --- a/117_dice/easybuild-run_cmd-v4rxvqn1.log +++ /dev/null @@ -1,9280 +0,0 @@ -# output for command: pytest -n 8 tests - -================================================================================= test session starts ================================================================================= -platform linux -- Python 3.10.4, pytest-7.1.2, pluggy-1.0.0 -rootdir: /tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9 -plugins: xdist-2.5.0, forked-1.4.0 -gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I -gw0 [198] / gw1 [198] / gw2 [198] / gw3 [198] / gw4 [198] / gw5 [198] / gw6 [198] / gw7 [198] - -......FFFFFFFF..FFFFs.......EEEEF........E.s...........EEEFEEFEFE.EFEFF...F.E...F.FFFEF..F..F.EFF..EFFFEEFFFEFFEFsFFFFFFF..FFFFFFFFs..F...FFFF.....F.F..FFF....F........FF.F.FF [ 88%] -FFFF.FF.FF............F [100%] -======================================================================================= ERRORS ======================================================================================== -______________________________________________________________________ ERROR collecting tests/test_notebooks.py _______________________________________________________________________ -ImportError while importing test module '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/tests/test_notebooks.py'. -Hint: make sure your test modules/packages have valid Python names. -Traceback: -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/importlib/__init__.py:126: in import_module - return _bootstrap._gcd_import(name[level:], package, level) -tests/test_notebooks.py:10: in - import nbformat -E ModuleNotFoundError: No module named 'nbformat' -___________________________________________________________ ERROR collecting tests/test_dice_interface/test_dice_genetic.py ___________________________________________________________ -ImportError while importing test module '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/tests/test_dice_interface/test_dice_genetic.py'. -Hint: make sure your test modules/packages have valid Python names. -Traceback: -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/importlib/__init__.py:126: in import_module - return _bootstrap._gcd_import(name[level:], package, level) -tests/test_dice_interface/test_dice_genetic.py:6: in - from dice_ml.utils.neuralnetworks import FFNetwork -dice_ml/utils/neuralnetworks.py:1: in - from torch import nn, sigmoid -E ModuleNotFoundError: No module named 'torch' -___________________________________________________________ ERROR collecting tests/test_dice_interface/test_dice_random.py ____________________________________________________________ -ImportError while importing test module '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/tests/test_dice_interface/test_dice_random.py'. -Hint: make sure your test modules/packages have valid Python names. -Traceback: -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/importlib/__init__.py:126: in import_module - return _bootstrap._gcd_import(name[level:], package, level) -tests/test_dice_interface/test_dice_random.py:4: in - import torch -E ModuleNotFoundError: No module named 'torch' -____________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_KD_tree_counterfactual_explanations_output[0-1] _____________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_features_to_vary[0-1-features_to_vary0] _________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_permitted_range[0-1-permitted_range0] __________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_permitted_range_categorical[0-4-permitted_range0] ____________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_duplicates[0-2] _____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_index[linear-0-1] ____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -______________________________________________ ERROR at setup of TestDiceKDBinaryVarsClassificationMethods.test_KD_tree_output[None-0-1] ______________________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -load_custom_vars_testing_dataset = Categorical CategoricalNum Numerical Outcome -0 a 0 10 0 -1 b ... 14 0 -3 a 2 88 0 -4 c 1 14 0 - - @pytest.fixture() - def KD_binary_vars_classification_exp_object(load_custom_vars_testing_dataset): - backend = 'sklearn' - dataset = load_custom_vars_testing_dataset - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_vars_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:28: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_index[binary-0-1] ____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_index[None-0-1] _____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -__________________________________ ERROR at setup of TestDiceKDBinaryVarsClassificationMethods.test_KD_tree_counterfactual_explanations_output[0-1] ___________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -load_custom_vars_testing_dataset = Categorical CategoricalNum Numerical Outcome -0 a 0 10 0 -1 b ... 14 0 -3 a 2 88 0 -4 c 1 14 0 - - @pytest.fixture() - def KD_binary_vars_classification_exp_object(load_custom_vars_testing_dataset): - backend = 'sklearn' - dataset = load_custom_vars_testing_dataset - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_vars_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:28: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_______________________________________________ ERROR at setup of TestDiceKDMultiClassificationMethods.test_KD_tree_output[linear-2-3] ________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_multi_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset_multiclass() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline_multiclass() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:39: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________________ ERROR at setup of TestPublicDataMethods.test_feature_precision ____________________________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def data_object(): -> dataset = helpers.load_adult_income_dataset() - -tests/test_data_interface/test_public_data_interface.py:15: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/utils/helpers.py:25: in load_adult_income_dataset - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/npyio.py:1813: in genfromtxt - fid = np.lib._datasource.open(fname, 'rt', encoding=encoding) -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:193: in open - return ds.open(path, mode, encoding=encoding, newline=newline) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = , path = 'https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', mode = 'rt', encoding = None, newline = None - - def open(self, path, mode='r', encoding=None, newline=None): - """ - Open and return file-like object. - - If `path` is an URL, it will be downloaded, stored in the - `DataSource` directory and opened from there. - - Parameters - ---------- - path : str - Local file path or URL to open. - mode : {'r', 'w', 'a'}, optional - Mode to open `path`. Mode 'r' for reading, 'w' for writing, - 'a' to append. Available modes depend on the type of object - specified by `path`. Default is 'r'. - encoding : {None, str}, optional - Open text file with given encoding. The default encoding will be - what `io.open` uses. - newline : {None, str}, optional - Newline to use when reading text file. - - Returns - ------- - out : file object - File object. - - """ - - # TODO: There is no support for opening a file for writing which - # doesn't exist yet (creating a file). Should there be? - - # TODO: Add a ``subdir`` parameter for specifying the subdirectory - # used to store URLs in self._destpath. - - if self._isurl(path) and self._iswritemode(mode): - raise ValueError("URLs are not writeable") - - # NOTE: _findfile will fail on a new file opened for writing. - found = self._findfile(path) - if found: - _fname, ext = self._splitzipext(found) - if ext == 'bz2': - mode.replace("+", "") -> return _file_openers[ext](found, mode=mode, - encoding=encoding, newline=newline) -E FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data' - -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:529: FileNotFoundError -_______________________________________________ ERROR at setup of TestDiceKDMultiClassificationMethods.test_KD_tree_output[binary-2-3] ________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_multi_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset_multiclass() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline_multiclass() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:39: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________________________________ ERROR at setup of TestDiceKDMultiClassificationMethods.test_KD_tree_output[None-2-3] _________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_multi_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset_multiclass() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline_multiclass() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:39: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________________ ERROR at setup of TestPublicDataMethods.test_permitted_range _____________________________________________________________ -[gw5] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def data_object(): -> dataset = helpers.load_adult_income_dataset() - -tests/test_data_interface/test_public_data_interface.py:15: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/utils/helpers.py:25: in load_adult_income_dataset - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/npyio.py:1813: in genfromtxt - fid = np.lib._datasource.open(fname, 'rt', encoding=encoding) -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:193: in open - return ds.open(path, mode, encoding=encoding, newline=newline) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = , path = 'https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', mode = 'rt', encoding = None, newline = None - - def open(self, path, mode='r', encoding=None, newline=None): - """ - Open and return file-like object. - - If `path` is an URL, it will be downloaded, stored in the - `DataSource` directory and opened from there. - - Parameters - ---------- - path : str - Local file path or URL to open. - mode : {'r', 'w', 'a'}, optional - Mode to open `path`. Mode 'r' for reading, 'w' for writing, - 'a' to append. Available modes depend on the type of object - specified by `path`. Default is 'r'. - encoding : {None, str}, optional - Open text file with given encoding. The default encoding will be - what `io.open` uses. - newline : {None, str}, optional - Newline to use when reading text file. - - Returns - ------- - out : file object - File object. - - """ - - # TODO: There is no support for opening a file for writing which - # doesn't exist yet (creating a file). Should there be? - - # TODO: Add a ``subdir`` parameter for specifying the subdirectory - # used to store URLs in self._destpath. - - if self._isurl(path) and self._iswritemode(mode): - raise ValueError("URLs are not writeable") - - # NOTE: _findfile will fail on a new file opened for writing. - found = self._findfile(path) - if found: - _fname, ext = self._splitzipext(found) - if ext == 'bz2': - mode.replace("+", "") -> return _file_openers[ext](found, mode=mode, - encoding=encoding, newline=newline) -E FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data' - -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:529: FileNotFoundError -__________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_invalid_query_instance[None-0-4-features_to_vary0-permitted_range0] ___________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_______________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_KD_tree_output[linear-0-1] _______________________________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_______________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_KD_tree_output[binary-0-1] _______________________________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________ ERROR at setup of TestDiceKDBinaryVarsClassificationMethods.test_invalid_query_instance[None-0-4-features_to_vary0-permitted_range0] _________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -load_custom_vars_testing_dataset = Categorical CategoricalNum Numerical Outcome -0 a 0 10 0 -1 b ... 14 0 -3 a 2 88 0 -4 c 1 14 0 - - @pytest.fixture() - def KD_binary_vars_classification_exp_object(load_custom_vars_testing_dataset): - backend = 'sklearn' - dataset = load_custom_vars_testing_dataset - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_vars_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:28: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________________________________ ERROR at setup of TestDiceKDBinaryClassificationMethods.test_KD_tree_output[None-0-1] ________________________________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - - @pytest.fixture() - def KD_binary_classification_exp_object(): - backend = 'sklearn' - dataset = helpers.load_custom_testing_dataset() - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:17: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_____________________________________________ ERROR at setup of TestDiceKDBinaryVarsClassificationMethods.test_KD_tree_output[linear-0-1] _____________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -load_custom_vars_testing_dataset = Categorical CategoricalNum Numerical Outcome -0 a 0 10 0 -1 b ... 14 0 -3 a 2 88 0 -4 c 1 14 0 - - @pytest.fixture() - def KD_binary_vars_classification_exp_object(load_custom_vars_testing_dataset): - backend = 'sklearn' - dataset = load_custom_vars_testing_dataset - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_vars_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:28: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_____________________________________________ ERROR at setup of TestDiceKDBinaryVarsClassificationMethods.test_KD_tree_output[binary-0-1] _____________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -load_custom_vars_testing_dataset = Categorical CategoricalNum Numerical Outcome -0 a 0 10 0 -1 b ... 14 0 -3 a 2 88 0 -4 c 1 14 0 - - @pytest.fixture() - def KD_binary_vars_classification_exp_object(load_custom_vars_testing_dataset): - backend = 'sklearn' - dataset = load_custom_vars_testing_dataset - d = dice_ml.Data(dataframe=dataset, continuous_features=['Numerical'], outcome_name='Outcome') - ML_modelpath = helpers.get_custom_vars_dataset_modelpath_pipeline() - m = dice_ml.Model(model_path=ML_modelpath, backend=backend) -> exp = dice_ml.Dice(d, m, method='kdtree') - -tests/test_dice_interface/test_dice_KD.py:28: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -====================================================================================== FAILURES ======================================================================================= -________________________________________________ TestSerializationCounterfactualExplanations.test_summary_importance_output[0-10-1.0] _________________________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 0 -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -total_CFs = 10, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_summary_importance_output(self, desired_class, sample_custom_query_10, - total_CFs, version): -> counterfactual_explanations = self.exp.global_feature_importance( - query_instances=sample_custom_query_10, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:201: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:361: in global_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 10, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_local_importance_output(self, desired_class, sample_custom_query_1, - total_CFs, version): -> counterfactual_explanations = self.exp.local_feature_importance( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:178: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:292: in local_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 2, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 2)]) - def test_counterfactual_explanations_output(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.generate_counterfactuals( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:157: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 10, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_local_importance_output(self, desired_class, sample_custom_query_1, - total_CFs, version): -> counterfactual_explanations = self.exp.local_feature_importance( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:178: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:292: in local_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 2, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 2)]) - def test_counterfactual_explanations_output(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.generate_counterfactuals( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:157: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -total_CFs = 10, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_summary_importance_output(self, desired_class, sample_custom_query_10, - total_CFs, version): -> counterfactual_explanations = self.exp.global_feature_importance( - query_instances=sample_custom_query_10, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:201: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:361: in global_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 2, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 2)]) - def test_no_counterfactuals_found(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.generate_counterfactuals( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:249: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 2, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 2)]) - def test_no_counterfactuals_found(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.generate_counterfactuals( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:249: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 10, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_no_counterfactuals_found_local_importance(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.local_feature_importance( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:268: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:292: in local_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -total_CFs = 10, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_no_counterfactuals_found_summary_importance(self, desired_class, - sample_custom_query_10, total_CFs, - version): -> counterfactual_explanations = self.exp.global_feature_importance( - query_instances=sample_custom_query_10, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:289: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:361: in global_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, desired_class = 0 -sample_custom_query_1 = Categorical Numerical -0 a 25, total_CFs = 10, version = '1.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_no_counterfactuals_found_local_importance(self, desired_class, - sample_custom_query_1, total_CFs, - version): -> counterfactual_explanations = self.exp.local_feature_importance( - query_instances=sample_custom_query_1, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:268: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:292: in local_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 0 -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -total_CFs = 10, version = '2.0' - - @pytest.mark.parametrize("version", ['1.0', '2.0']) - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(0, 10)]) - def test_no_counterfactuals_found_summary_importance(self, desired_class, - sample_custom_query_10, total_CFs, - version): -> counterfactual_explanations = self.exp.global_feature_importance( - query_instances=sample_custom_query_10, desired_class=desired_class, - total_CFs=total_CFs) - -tests/test_counterfactual_explanations.py:289: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:361: in global_feature_importance - importances = self.feature_importance( -dice_ml/explainer_interfaces/explainer_base.py:408: in feature_importance - cf_examples_list = self.generate_counterfactuals( -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00 - - def test_tf(self): - tf = pytest.importorskip("tensorflow") - backend = 'TF'+tf.__version__[0] -> exp = self._get_exp(backend, method="gradient") - -tests/test_dice.py:33: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -tests/test_dice.py:11: in _get_exp - dataset = helpers.load_adult_income_dataset() -dice_ml/utils/helpers.py:86: in load_adult_income_dataset - shutil.rmtree(entire_path) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/shutil.py:722: in rmtree - _rmtree_safe_fd(fd, path, onerror) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/shutil.py:655: in _rmtree_safe_fd - _rmtree_safe_fd(dirfd, fullname, onerror) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/shutil.py:661: in _rmtree_safe_fd - onerror(os.rmdir, fullname, sys.exc_info()) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -topfd = 14, path = '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml', onerror = .onerror at 0x154b802da5f0> - - def _rmtree_safe_fd(topfd, path, onerror): - try: - with os.scandir(topfd) as scandir_it: - entries = list(scandir_it) - except OSError as err: - err.filename = path - onerror(os.scandir, path, sys.exc_info()) - return - for entry in entries: - fullname = os.path.join(path, entry.name) - try: - is_dir = entry.is_dir(follow_symlinks=False) - except OSError: - is_dir = False - else: - if is_dir: - try: - orig_st = entry.stat(follow_symlinks=False) - is_dir = stat.S_ISDIR(orig_st.st_mode) - except OSError: - onerror(os.lstat, fullname, sys.exc_info()) - continue - if is_dir: - try: - dirfd = os.open(entry.name, os.O_RDONLY, dir_fd=topfd) - dirfd_closed = False - except OSError: - onerror(os.open, fullname, sys.exc_info()) - else: - try: - if os.path.samestat(orig_st, os.fstat(dirfd)): - _rmtree_safe_fd(dirfd, fullname, onerror) - try: - os.close(dirfd) - dirfd_closed = True -> os.rmdir(entry.name, dir_fd=topfd) -E FileNotFoundError: [Errno 2] No such file or directory: 'machine-learning-databases' - -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/shutil.py:659: FileNotFoundError -____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[linear-1.0-desired_range0-6] _____________________________________________________ -[gw7] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '1.0', posthoc_sparsity_algorithm = 'linear' - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[binary-2.0-desired_range0-6] _____________________________________________________ -[gw7] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '2.0', posthoc_sparsity_algorithm = 'binary' - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[binary-1.0-desired_range0-6] _____________________________________________________ -[gw7] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '1.0', posthoc_sparsity_algorithm = 'binary' - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[None-2.0-desired_range0-6] ______________________________________________________ -[gw7] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '2.0', posthoc_sparsity_algorithm = None - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_____________________________________________________________ TestBaseExplainerLoader.test_unsupported_sampling_strategy ______________________________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = - - def test_unsupported_sampling_strategy(self): - pytest.importorskip('sklearn') - backend = 'sklearn' - with pytest.raises(UserConfigValidationException): -> self._get_exp(backend, method="unsupported") - -tests/test_dice.py:65: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -tests/test_dice.py:11: in _get_exp - dataset = helpers.load_adult_income_dataset() -dice_ml/utils/helpers.py:25: in load_adult_income_dataset - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/npyio.py:1813: in genfromtxt - fid = np.lib._datasource.open(fname, 'rt', encoding=encoding) -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:193: in open - return ds.open(path, mode, encoding=encoding, newline=newline) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = , path = 'https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', mode = 'rt', encoding = None, newline = None - - def open(self, path, mode='r', encoding=None, newline=None): - """ - Open and return file-like object. - - If `path` is an URL, it will be downloaded, stored in the - `DataSource` directory and opened from there. - - Parameters - ---------- - path : str - Local file path or URL to open. - mode : {'r', 'w', 'a'}, optional - Mode to open `path`. Mode 'r' for reading, 'w' for writing, - 'a' to append. Available modes depend on the type of object - specified by `path`. Default is 'r'. - encoding : {None, str}, optional - Open text file with given encoding. The default encoding will be - what `io.open` uses. - newline : {None, str}, optional - Newline to use when reading text file. - - Returns - ------- - out : file object - File object. - - """ - - # TODO: There is no support for opening a file for writing which - # doesn't exist yet (creating a file). Should there be? - - # TODO: Add a ``subdir`` parameter for specifying the subdirectory - # used to store URLs in self._destpath. - - if self._isurl(path) and self._iswritemode(mode): - raise ValueError("URLs are not writeable") - - # NOTE: _findfile will fail on a new file opened for writing. - found = self._findfile(path) - if found: - _fname, ext = self._splitzipext(found) - if ext == 'bz2': - mode.replace("+", "") -> return _file_openers[ext](found, mode=mode, - encoding=encoding, newline=newline) -E FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data' - -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:529: FileNotFoundError -________________________________________________________________ TestBaseExplainerLoader.test_minimum_query_instances _________________________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = - - def test_minimum_query_instances(self): - pytest.importorskip('sklearn') - backend = 'sklearn' -> exp = self._get_exp(backend) - -tests/test_dice.py:56: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -tests/test_dice.py:11: in _get_exp - dataset = helpers.load_adult_income_dataset() -dice_ml/utils/helpers.py:25: in load_adult_income_dataset - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/npyio.py:1813: in genfromtxt - fid = np.lib._datasource.open(fname, 'rt', encoding=encoding) -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:193: in open - return ds.open(path, mode, encoding=encoding, newline=newline) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = , path = 'https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', mode = 'rt', encoding = None, newline = None - - def open(self, path, mode='r', encoding=None, newline=None): - """ - Open and return file-like object. - - If `path` is an URL, it will be downloaded, stored in the - `DataSource` directory and opened from there. - - Parameters - ---------- - path : str - Local file path or URL to open. - mode : {'r', 'w', 'a'}, optional - Mode to open `path`. Mode 'r' for reading, 'w' for writing, - 'a' to append. Available modes depend on the type of object - specified by `path`. Default is 'r'. - encoding : {None, str}, optional - Open text file with given encoding. The default encoding will be - what `io.open` uses. - newline : {None, str}, optional - Newline to use when reading text file. - - Returns - ------- - out : file object - File object. - - """ - - # TODO: There is no support for opening a file for writing which - # doesn't exist yet (creating a file). Should there be? - - # TODO: Add a ``subdir`` parameter for specifying the subdirectory - # used to store URLs in self._destpath. - - if self._isurl(path) and self._iswritemode(mode): - raise ValueError("URLs are not writeable") - - # NOTE: _findfile will fail on a new file opened for writing. - found = self._findfile(path) - if found: - _fname, ext = self._splitzipext(found) - if ext == 'bz2': - mode.replace("+", "") -> return _file_openers[ext](found, mode=mode, - encoding=encoding, newline=newline) -E FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data' - -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:529: FileNotFoundError -__________________________________________________________________ TestUserDataCorruption.test_user_data_corruption ___________________________________________________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = - - def test_user_data_corruption(self): -> dataset = helpers.load_adult_income_dataset() - -tests/test_data_interface/test_public_data_interface.py:227: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/utils/helpers.py:25: in load_adult_income_dataset - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/npyio.py:1813: in genfromtxt - fid = np.lib._datasource.open(fname, 'rt', encoding=encoding) -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:193: in open - return ds.open(path, mode, encoding=encoding, newline=newline) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = , path = 'https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', mode = 'rt', encoding = None, newline = None - - def open(self, path, mode='r', encoding=None, newline=None): - """ - Open and return file-like object. - - If `path` is an URL, it will be downloaded, stored in the - `DataSource` directory and opened from there. - - Parameters - ---------- - path : str - Local file path or URL to open. - mode : {'r', 'w', 'a'}, optional - Mode to open `path`. Mode 'r' for reading, 'w' for writing, - 'a' to append. Available modes depend on the type of object - specified by `path`. Default is 'r'. - encoding : {None, str}, optional - Open text file with given encoding. The default encoding will be - what `io.open` uses. - newline : {None, str}, optional - Newline to use when reading text file. - - Returns - ------- - out : file object - File object. - - """ - - # TODO: There is no support for opening a file for writing which - # doesn't exist yet (creating a file). Should there be? - - # TODO: Add a ``subdir`` parameter for specifying the subdirectory - # used to store URLs in self._destpath. - - if self._isurl(path) and self._iswritemode(mode): - raise ValueError("URLs are not writeable") - - # NOTE: _findfile will fail on a new file opened for writing. - found = self._findfile(path) - if found: - _fname, ext = self._splitzipext(found) - if ext == 'bz2': - mode.replace("+", "") -> return _file_openers[ext](found, mode=mode, - encoding=encoding, newline=newline) -E FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data' - -/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/lib/_datasource.py:529: FileNotFoundError -_____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[None-1.0-desired_range0-6] ______________________________________________________ -[gw7] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '1.0', posthoc_sparsity_algorithm = None - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ TestDiceKDRegressionMethods.test_KD_tree_output[linear-2.0-desired_range0-6] _____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6, version = '2.0', posthoc_sparsity_algorithm = 'linear' - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - @pytest.mark.parametrize(("version"), ['2.0', '1.0']) - @pytest.mark.parametrize(("posthoc_sparsity_algorithm"), ['linear', 'binary', None]) - def test_KD_tree_output(self, desired_range, sample_custom_query_2, total_CFs, version, posthoc_sparsity_algorithm): -> cf_examples = self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range, - posthoc_sparsity_algorithm=posthoc_sparsity_algorithm) - -tests/test_dice_interface/test_dice_KD.py:175: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________ TestDiceKDRegressionMethods.test_KD_tree_counterfactual_explanations_output[desired_range0-6] ____________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_range = [1, 2.8] -sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 6 - - @pytest.mark.parametrize(("desired_range", "total_CFs"), [([1, 2.8], 6)]) - def test_KD_tree_counterfactual_explanations_output(self, desired_range, sample_custom_query_2, - total_CFs): -> counterfactual_explanations = self.exp_regr.generate_counterfactuals( - query_instances=sample_custom_query_2, total_CFs=total_CFs, - desired_range=desired_range) - -tests/test_dice_interface/test_dice_KD.py:191: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'random' -sample_custom_query_1 = Categorical Numerical -0 a 25 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_local_feature_importance( - self, desired_class, method, - sample_custom_query_1, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - sample_custom_query = pd.concat([sample_custom_query_1, sample_custom_query_1]) -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query, - total_CFs=15, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:62: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/2 [00:00, desired_class = 1, method = 'kdtree' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_global_feature_importance( - self, desired_class, method, - sample_custom_query_10, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:90: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_______________________________________________ TestExplainerBaseBinaryClassification.test_incorrect_features_permitted_range[1-kdtree] _______________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_incorrect_features_permitted_range( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:153: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________________ TestDiceKDRegressionMethods.test_zero_cfs[0-desired_range0-0] ____________________________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 0, desired_range = [1, 2.8] -sample_custom_query_4 = Categorical Numerical -0 c 13, total_CFs = 0 - - @pytest.mark.parametrize(("desired_class", "desired_range", "total_CFs"), [(0, [1, 2.8], 0)]) - def test_zero_cfs(self, desired_class, desired_range, sample_custom_query_4, total_CFs): -> self.exp_regr._generate_counterfactuals(query_instance=sample_custom_query_4, total_CFs=total_CFs, - desired_range=desired_range) - -tests/test_dice_interface/test_dice_KD.py:206: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_KD.py:94: in _generate_counterfactuals - test_pred = self.predict_fn(query_instance)[0] -dice_ml/explainer_interfaces/dice_KD.py:137: in predict_fn - return self.model.get_output(input_instance, model_score=False) -dice_ml/model_interfaces/base_model.py:58: in get_output - return self.model.predict(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:457: in predict - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 13, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________________________________ TestExplainerBaseBinaryClassification.test_incorrect_features_to_vary_list[1-kdtree] _________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_incorrect_features_to_vary_list( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:133: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_________________________________________________ TestExplainerBaseBinaryClassification.test_query_instance_unknown_column[1-kdtree] __________________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_5 = X Numerical -0 d 25, custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_query_instance_unknown_column( - self, desired_class, method, sample_custom_query_5, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:213: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[100-kdtree] ___________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 100, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:195: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseBinaryClassification.test_local_feature_importance[1-genetic] ____________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'genetic' -sample_custom_query_1 = Categorical Numerical -0 a 25 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_local_feature_importance( - self, desired_class, method, - sample_custom_query_1, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - sample_custom_query = pd.concat([sample_custom_query_1, sample_custom_query_1]) -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query, - total_CFs=15, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:62: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/2 [00:00, desired_class = 1, method = 'kdtree' -sample_custom_query_3 = Categorical Numerical -0 d 1000000 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_query_instance_outside_bounds( - self, desired_class, method, sample_custom_query_3, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:228: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[a-random] ____________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 'a', method = 'random' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_1, total_CFs=3, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:200: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_local_feature_importance( - self, desired_class, method, - sample_custom_query_1, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:57: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_________________________________________________________ TestExplainerBaseBinaryClassification.test_desired_class[1-random] __________________________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'random' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_desired_class( - self, desired_class, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) -> ans = exp.generate_counterfactuals(query_instances=sample_custom_query_2, - features_to_vary='all', - total_CFs=2, desired_class=desired_class, - proximity_weight=0.2, sparsity_weight=0.2, - diversity_weight=5.0, - categorical_penalty=0.1, - permitted_range=None) - -tests/test_dice_interface/test_explainer_base.py:246: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'random', total_CFs = 1 -permitted_range = {'Numerical': [10, 150]}, sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs", "permitted_range"), - [(1, 1, {'Numerical': [10, 150]})]) - def test_permitted_range( - self, desired_class, method, total_CFs, permitted_range, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) -> ans = exp.generate_counterfactuals(query_instances=sample_custom_query_2, - permitted_range=permitted_range, - total_CFs=total_CFs, desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:285: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'random' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_global_feature_importance( - self, desired_class, method, - sample_custom_query_10, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_10, - total_CFs=15, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:95: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, method = 'random' -features_to_vary = ['Categorical', 'Numerical'], desired_class = 0, desired_range = None, sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 0 -permitted_range = None, custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize(("features_to_vary", "desired_class", "desired_range", "total_CFs", "permitted_range"), - [("all", 0, None, 0, None)]) - def test_zero_cfs_internal( - self, method, features_to_vary, desired_class, desired_range, sample_custom_query_2, total_CFs, - permitted_range, custom_public_data_interface, sklearn_binary_classification_model_interface): - if method == 'genetic': - pytest.skip('DiceGenetic explainer does not handle the total counterfactuals as zero') - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - features_to_vary = exp.setup(features_to_vary, None, sample_custom_query_2, "inverse_mad") -> exp._generate_counterfactuals(features_to_vary=features_to_vary, query_instance=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class, - desired_range=desired_range, permitted_range=permitted_range) - -tests/test_dice_interface/test_explainer_base.py:312: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[a-genetic] ____________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 'a', method = 'genetic' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_1, total_CFs=3, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:200: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'genetic' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_desired_class( - self, desired_class, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) -> ans = exp.generate_counterfactuals(query_instances=sample_custom_query_2, - features_to_vary='all', - total_CFs=2, desired_class=desired_class, - proximity_weight=0.2, sparsity_weight=0.2, - diversity_weight=5.0, - categorical_penalty=0.1, - permitted_range=None) - -tests/test_dice_interface/test_explainer_base.py:246: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 1, method = 'genetic', total_CFs = 1 -permitted_range = {'Numerical': [10, 150]}, sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs", "permitted_range"), - [(1, 1, {'Numerical': [10, 150]})]) - def test_permitted_range( - self, desired_class, method, total_CFs, permitted_range, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) -> ans = exp.generate_counterfactuals(query_instances=sample_custom_query_2, - permitted_range=permitted_range, - total_CFs=total_CFs, desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:285: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'kdtree', features_to_vary = 'all', desired_class = 0 -desired_range = None, sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 0, permitted_range = None -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize(("features_to_vary", "desired_class", "desired_range", "total_CFs", "permitted_range"), - [("all", 0, None, 0, None)]) - def test_zero_cfs_internal( - self, method, features_to_vary, desired_class, desired_range, sample_custom_query_2, total_CFs, - permitted_range, custom_public_data_interface, sklearn_binary_classification_model_interface): - if method == 'genetic': - pytest.skip('DiceGenetic explainer does not handle the total counterfactuals as zero') -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:307: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[a-kdtree] ____________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 'a', method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:195: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_________________________________________________________ TestExplainerBaseBinaryClassification.test_desired_class[1-kdtree] __________________________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_desired_class( - self, desired_class, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:242: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseBinaryClassification.test_global_feature_importance[1-genetic] ___________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'genetic' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -sample_counterfactual_example_dummy = Categorical Numerical Outcome -0 a 25 1 -1 b 50 1 -2 ... 175 1 -12 c 200 1 -13 c 225 1 -14 c 250 1 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_global_feature_importance( - self, desired_class, method, - sample_custom_query_10, sample_counterfactual_example_dummy, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_10, - total_CFs=15, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:95: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, desired_class = 1, method = 'kdtree', total_CFs = 1 -permitted_range = {'Numerical': [10, 150]}, sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs", "permitted_range"), - [(1, 1, {'Numerical': [10, 150]})]) - def test_permitted_range( - self, desired_class, method, total_CFs, permitted_range, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:281: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -__________________________________________________ TestExplainerBaseMultiClassClassification.test_desired_class[kdtree-2-2-genetic] ___________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 2, total_CFs = 2, method = 'genetic' -genetic_initialization = 'kdtree', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - - if method != 'genetic': - ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class) - else: -> ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class, - initialization=genetic_initialization) - -tests/test_dice_interface/test_explainer_base.py:353: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 2, total_CFs = 2, method = 'random' -genetic_initialization = 'random', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - - if method != 'genetic': -> ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:349: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 100, total_CFs = 3, method = 'genetic' -sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_4, total_CFs=total_CFs, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:403: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 13, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 2, total_CFs = 2, method = 'kdtree' -genetic_initialization = 'random', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:343: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_______________________________________________________ TestExplainerBaseMultiClassClassification.test_zero_totalcfs[1-kdtree] ________________________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_zero_totalcfs( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:325: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseMultiClassClassification.test_desired_class[kdtree-2-2-kdtree] ___________________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 2, total_CFs = 2, method = 'kdtree' -genetic_initialization = 'kdtree', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:343: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_________________________________________________ TestExplainerBaseMultiClassClassification.test_unsupported_multiclass[100-3-kdtree] _________________________________________________ -[gw0] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 100, total_CFs = 3, method = 'kdtree' -sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:398: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseMultiClassClassification.test_desired_class[kdtree-2-2-random] ___________________________________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 2, total_CFs = 2, method = 'random' -genetic_initialization = 'kdtree', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - - if method != 'genetic': -> ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:349: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 2, total_CFs = 2, method = 'genetic' -genetic_initialization = 'random', sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(2, 2)]) - @pytest.mark.parametrize("genetic_initialization", ['kdtree', 'random']) - def test_desired_class( - self, desired_class, total_CFs, method, genetic_initialization, - sample_custom_query_2, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - - if method != 'genetic': - ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class) - else: -> ans = exp.generate_counterfactuals( - query_instances=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class, - initialization=genetic_initialization) - -tests/test_dice_interface/test_explainer_base.py:353: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 100, total_CFs = 3, method = 'random' -sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_4, total_CFs=total_CFs, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:403: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 13, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, desired_class = 'opposite', total_CFs = 3, method = 'random' -sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_4, total_CFs=total_CFs, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:403: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 13, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'kdtree' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = , explainer_function = 'generate_counterfactuals' - - @pytest.mark.parametrize('explainer_function', - ['generate_counterfactuals', 'local_feature_importance', - 'feature_importance', 'global_feature_importance']) - def test_generate_counterfactuals_user_config_validations( - self, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface, - explainer_function): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:494: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -______________________________________________ TestExplainerBaseMultiClassClassification.test_unsupported_multiclass[opposite-3-kdtree] _______________________________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 'opposite', total_CFs = 3, method = 'kdtree' -sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:398: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -_____________________________________________ TestExplainerBaseMultiClassClassification.test_zero_cfs_internal[all-0-None-0-None-kdtree] ______________________________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'kdtree', features_to_vary = 'all' -desired_class = 0, desired_range = None, sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 0, permitted_range = None -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("features_to_vary", "desired_class", "desired_range", "total_CFs", "permitted_range"), - [("all", 0, None, 0, None)]) - def test_zero_cfs_internal( - self, method, features_to_vary, desired_class, desired_range, sample_custom_query_2, total_CFs, - permitted_range, custom_public_data_interface, sklearn_multiclass_classification_model_interface): - if method == 'genetic': - pytest.skip('DiceGenetic explainer does not handle the total counterfactuals as zero') -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:418: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -________________________________________________ TestExplainerBaseBinaryClassification.test_incorrect_values_permitted_range[1-kdtree] ________________________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 1, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [1]) - def test_incorrect_values_permitted_range( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:173: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -______________________________________________ TestExplainerBaseMultiClassClassification.test_unsupported_multiclass[opposite-3-genetic] ______________________________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 'opposite', total_CFs = 3 -method = 'genetic', sample_custom_query_4 = Categorical Numerical -0 c 13 -custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("desired_class", "total_CFs"), [(100, 3), ('opposite', 3)]) - def test_unsupported_multiclass( - self, desired_class, total_CFs, method, sample_custom_query_4, - custom_public_data_interface, - sklearn_multiclass_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_4, total_CFs=total_CFs, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:403: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 13, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'random' -features_to_vary = ['Categorical', 'Numerical'], desired_class = 0, desired_range = None, sample_custom_query_2 = Categorical Numerical -0 b 25, total_CFs = 0 -permitted_range = None, custom_public_data_interface = -sklearn_multiclass_classification_model_interface = - - @pytest.mark.parametrize(("features_to_vary", "desired_class", "desired_range", "total_CFs", "permitted_range"), - [("all", 0, None, 0, None)]) - def test_zero_cfs_internal( - self, method, features_to_vary, desired_class, desired_range, sample_custom_query_2, total_CFs, - permitted_range, custom_public_data_interface, sklearn_multiclass_classification_model_interface): - if method == 'genetic': - pytest.skip('DiceGenetic explainer does not handle the total counterfactuals as zero') - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_multiclass_classification_model_interface, - method=method) - features_to_vary = exp.setup(features_to_vary, None, sample_custom_query_2, "inverse_mad") -> exp._generate_counterfactuals(features_to_vary=features_to_vary, query_instance=sample_custom_query_2, - total_CFs=total_CFs, desired_class=desired_class, - desired_range=desired_range, permitted_range=permitted_range) - -tests/test_dice_interface/test_explainer_base.py:423: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________ TestExplainerBaseUserConfigValidations.test_generate_counterfactuals_user_config_validations[global_feature_importance-kdtree] ____________________________ -[gw3] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'kdtree' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = , explainer_function = 'global_feature_importance' - - @pytest.mark.parametrize('explainer_function', - ['generate_counterfactuals', 'local_feature_importance', - 'feature_importance', 'global_feature_importance']) - def test_generate_counterfactuals_user_config_validations( - self, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface, - explainer_function): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:494: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________ TestExplainerBaseUserConfigValidations.test_generate_counterfactuals_user_config_validations[local_feature_importance-kdtree] ____________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'kdtree' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = , explainer_function = 'local_feature_importance' - - @pytest.mark.parametrize('explainer_function', - ['generate_counterfactuals', 'local_feature_importance', - 'feature_importance', 'global_feature_importance']) - def test_generate_counterfactuals_user_config_validations( - self, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface, - explainer_function): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:494: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[100-random] ___________________________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 100, method = 'random' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_1, total_CFs=3, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:200: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'kdtree' -sample_custom_query_2 = Categorical Numerical -0 b 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = , explainer_function = 'feature_importance' - - @pytest.mark.parametrize('explainer_function', - ['generate_counterfactuals', 'local_feature_importance', - 'feature_importance', 'global_feature_importance']) - def test_generate_counterfactuals_user_config_validations( - self, method, sample_custom_query_2, - custom_public_data_interface, - sklearn_binary_classification_model_interface, - explainer_function): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:494: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________ TestExplainerBaseDataValidations.test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[genetic] ____________________________ -[gw1] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'genetic' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_1, - total_CFs=1) - -tests/test_dice_interface/test_explainer_base.py:657: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'random' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_query_points( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_1, - total_CFs=15) - -tests/test_dice_interface/test_explainer_base.py:594: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'genetic' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_query_points( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_1, - total_CFs=15) - -tests/test_dice_interface/test_explainer_base.py:594: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'genetic' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_10, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_10, - total_CFs=1) - -tests/test_dice_interface/test_explainer_base.py:625: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:652: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -__________________________________________________ TestExplainerBaseBinaryClassification.test_unsupported_binary_class[100-genetic] ___________________________________________________ -[gw4] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , desired_class = 100, method = 'genetic' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - @pytest.mark.parametrize("desired_class", [100, 'a']) - def test_unsupported_binary_class( - self, desired_class, method, sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - with pytest.raises(UserConfigValidationException) as ucve: -> exp.generate_counterfactuals(query_instances=sample_custom_query_1, total_CFs=3, - desired_class=desired_class) - -tests/test_dice_interface/test_explainer_base.py:200: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_genetic.py:270: in _generate_counterfactuals - self.num_output_nodes = self.model.get_num_output_nodes2(query_instance) -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'kdtree' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_query_points( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:589: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -___________________________ TestExplainerBaseDataValidations.test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[random] ____________________________ -[gw6] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'random' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_10, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_10, - total_CFs=1) - -tests/test_dice_interface/test_explainer_base.py:625: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/10 [00:00, method = 'kdtree' -sample_custom_query_10 = Categorical Numerical -0 a 25 -1 b 50 -2 c 75 -3 a ... c 150 -6 a 175 -7 b 200 -8 c 225 -9 a 250 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_10, - custom_public_data_interface, - sklearn_binary_classification_model_interface): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:620: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -____________________________ TestExplainerBaseDataValidations.test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[random] ____________________________ -[gw2] linux -- Python 3.10.4 /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python - -self = , method = 'random' -sample_custom_query_1 = Categorical Numerical -0 a 25 -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point( - self, method, - sample_custom_query_1, - custom_public_data_interface, - sklearn_binary_classification_model_interface): - exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -> cf_explanations = exp.generate_counterfactuals( - query_instances=sample_custom_query_1, - total_CFs=1) - -tests/test_dice_interface/test_explainer_base.py:657: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/explainer_interfaces/explainer_base.py:161: in generate_counterfactuals - res = self._generate_counterfactuals( -dice_ml/explainer_interfaces/dice_random.py:78: in _generate_counterfactuals - model_predictions = self.predict_fn(query_instance) -dice_ml/explainer_interfaces/explainer_base.py:484: in predict_fn - preds = self.model.get_output(input_instance) -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 25, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError --------------------------------------------------------------------------------- Captured stderr call --------------------------------------------------------------------------------- - 0%| | 0/1 [00:00, method = 'kdtree' -custom_public_data_interface = -sklearn_binary_classification_model_interface = - - def test_check_any_counterfactuals_computed( - self, method, - custom_public_data_interface, - sklearn_binary_classification_model_interface - ): -> exp = dice_ml.Dice( - custom_public_data_interface, - sklearn_binary_classification_model_interface, - method=method) - -tests/test_dice_interface/test_explainer_base.py:25: -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ -dice_ml/dice.py:21: in __init__ - self.decide_implementation_type(data_interface, model_interface, method, **kwargs) -dice_ml/dice.py:31: in decide_implementation_type - self.__init__(data_interface, model_interface, **kwargs) -dice_ml/explainer_interfaces/dice_KD.py:44: in __init__ - self.num_output_nodes = self.model.get_num_output_nodes2( -dice_ml/model_interfaces/base_model.py:70: in get_num_output_nodes2 - return self.get_output(input_instance).shape[1] -dice_ml/model_interfaces/base_model.py:54: in get_output - return self.model.predict_proba(input_instance) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:523: in predict_proba - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:763: in transform - Xs = self._fit_transform( -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/compose/_column_transformer.py:621: in _fit_transform - return Parallel(n_jobs=self.n_jobs)( -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:1043: in __call__ - if self.dispatch_one_batch(iterator): -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:861: in dispatch_one_batch - self._dispatch(tasks) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:779: in _dispatch - job = self._backend.apply_async(batch, callback=cb) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:208: in apply_async - result = ImmediateResult(func) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/_parallel_backends.py:572: in __init__ - self.results = batch() -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in __call__ - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/joblib/parallel.py:262: in - return [func(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/utils/fixes.py:117: in __call__ - return self.function(*args, **kwargs) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:853: in _transform_one - res = transformer.transform(X) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/pipeline.py:635: in transform - Xt = transform.transform(Xt) -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:515: in transform - X = self._validate_input(X, in_fit=False) -_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - -self = SimpleImputer(strategy='median'), X = Numerical -0 10, in_fit = False - - def _validate_input(self, X, in_fit): - allowed_strategies = ["mean", "median", "most_frequent", "constant"] - if self.strategy not in allowed_strategies: - raise ValueError( - "Can only use these strategies: {0} got strategy={1}".format( - allowed_strategies, self.strategy - ) - ) - - if self.strategy in ("most_frequent", "constant"): - # If input is a list of strings, dtype = object. - # Otherwise ValueError is raised in SimpleImputer - # with strategy='most_frequent' or 'constant' - # because the list is converted to Unicode numpy array - if isinstance(X, list) and any( - isinstance(elem, str) for row in X for elem in row - ): - dtype = object - else: - dtype = None - else: - dtype = FLOAT_DTYPES - -> if not in_fit and self._fit_dtype.kind == "O": -E AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' - -/apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/impute/_base.py:292: AttributeError -================================================================================== warnings summary =================================================================================== -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 28 warnings -tests/test_dice_interface/test_explainer_base.py: 91 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator SimpleImputer from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 28 warnings -tests/test_dice_interface/test_explainer_base.py: 91 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator StandardScaler from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 28 warnings -tests/test_dice.py: 1 warning -tests/test_dice_interface/test_explainer_base.py: 91 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator Pipeline from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 28 warnings -tests/test_dice.py: 1 warning -tests/test_dice_interface/test_explainer_base.py: 91 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator OneHotEncoder from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 28 warnings -tests/test_dice.py: 1 warning -tests/test_dice_interface/test_explainer_base.py: 91 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator ColumnTransformer from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 20 warnings -tests/test_dice.py: 1 warning -tests/test_dice_interface/test_explainer_base.py: 76 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator DecisionTreeClassifier from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_counterfactual_explanations.py: 18 warnings -tests/test_dice_interface/test_dice_KD.py: 20 warnings -tests/test_dice.py: 1 warning -tests/test_dice_interface/test_explainer_base.py: 76 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator RandomForestClassifier from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_dice_interface/test_dice_KD.py: 8 warnings -tests/test_dice_interface/test_explainer_base.py: 15 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator DecisionTreeRegressor from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_dice_interface/test_dice_KD.py: 8 warnings -tests/test_dice_interface/test_explainer_base.py: 15 warnings - /apps/gent/RHEL8/cascadelake-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages/sklearn/base.py:329: UserWarning: Trying to unpickle estimator RandomForestRegressor from version 1.1.1 when using version 1.1.2. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: - https://scikit-learn.org/stable/model_persistence.html#security-maintainability-limitations - warnings.warn( - -tests/test_dice_interface/test_dice_tensorflow.py::TestDiceTensorFlowMethods::test_yloss[hinge_loss-4.6711] - /tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/dice_ml/utils/helpers.py:25: ConversionWarning: Some errors were detected ! - Line #5918 (got 6 columns instead of 15) - raw_data = np.genfromtxt('https://archive.ics.uci.edu/ml/machine-learning-databases/adult/adult.data', - -tests/test_model_interface/test_keras_tensorflow_model.py::test_model_initiation_fullpath - /tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/diceml/dice_ml-0.9/dice_ml/model.py:34: UserWarning: {'model': 'keras_tensorflow_model.KerasTensorFlowModel', 'explainer': 'dice_tensorflow2.DiceTensorFlow2'} backend not in supported backends sklearn,TF1,TF2,PYT - warnings.warn('{0} backend not in supported backends {1}'.format( - --- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=============================================================================== short test summary info =============================================================================== -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_summary_importance_output[0-10-1.0] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_local_importance_output[0-10-2.0] - AttributeError: 'SimpleImputer' object has n... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_counterfactual_explanations_output[0-2-1.0] - AttributeError: 'SimpleImputer' ob... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_local_importance_output[0-10-1.0] - AttributeError: 'SimpleImputer' object has n... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_counterfactual_explanations_output[0-2-2.0] - AttributeError: 'SimpleImputer' ob... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_summary_importance_output[0-10-2.0] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found[0-2-1.0] - AttributeError: 'SimpleImputer' object has n... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found[0-2-2.0] - AttributeError: 'SimpleImputer' object has n... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found_local_importance[0-10-2.0] - AttributeError: 'SimpleImp... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found_summary_importance[0-10-1.0] - AttributeError: 'SimpleI... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found_local_importance[0-10-1.0] - AttributeError: 'SimpleImp... -FAILED tests/test_counterfactual_explanations.py::TestSerializationCounterfactualExplanations::test_no_counterfactuals_found_summary_importance[0-10-2.0] - AttributeError: 'SimpleI... -FAILED tests/test_dice.py::TestBaseExplainerLoader::test_tf - FileNotFoundError: [Errno 2] No such file or directory: 'machine-learning-databases' -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[linear-1.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attr... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[binary-2.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attr... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[binary-1.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attr... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[None-2.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attrib... -FAILED tests/test_dice.py::TestBaseExplainerLoader::test_unsupported_sampling_strategy - FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/dice... -FAILED tests/test_dice.py::TestBaseExplainerLoader::test_minimum_query_instances - FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/easybuild/build/diceml/0.9... -FAILED tests/test_data_interface/test_public_data_interface.py::TestUserDataCorruption::test_user_data_corruption - FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vs... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[None-1.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attrib... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_output[linear-2.0-desired_range0-6] - AttributeError: 'SimpleImputer' object has no attr... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_KD_tree_counterfactual_explanations_output[desired_range0-6] - AttributeError: 'SimpleImputer' o... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_local_feature_importance[1-random] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_global_feature_importance[1-kdtree] - AttributeError: 'SimpleImputer' object ha... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_incorrect_features_permitted_range[1-kdtree] - AttributeError: 'SimpleImputer' ... -FAILED tests/test_dice_interface/test_dice_KD.py::TestDiceKDRegressionMethods::test_zero_cfs[0-desired_range0-0] - AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_incorrect_features_to_vary_list[1-kdtree] - AttributeError: 'SimpleImputer' obj... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_query_instance_unknown_column[1-kdtree] - AttributeError: 'SimpleImputer' objec... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[100-kdtree] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_local_feature_importance[1-genetic] - AttributeError: 'SimpleImputer' object ha... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_query_instance_outside_bounds[1-kdtree] - AttributeError: 'SimpleImputer' objec... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[a-random] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_local_feature_importance[1-kdtree] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_desired_class[1-random] - AttributeError: 'SimpleImputer' object has no attribu... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_permitted_range[1-1-permitted_range0-random] - AttributeError: 'SimpleImputer' ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_global_feature_importance[1-random] - AttributeError: 'SimpleImputer' object ha... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_zero_cfs_internal[all-0-None-0-None-random] - AttributeError: 'SimpleImputer' o... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[a-genetic] - AttributeError: 'SimpleImputer' object ha... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_desired_class[1-genetic] - AttributeError: 'SimpleImputer' object has no attrib... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_permitted_range[1-1-permitted_range0-genetic] - AttributeError: 'SimpleImputer'... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_zero_cfs_internal[all-0-None-0-None-kdtree] - AttributeError: 'SimpleImputer' o... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[a-kdtree] - AttributeError: 'SimpleImputer' object has... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_desired_class[1-kdtree] - AttributeError: 'SimpleImputer' object has no attribu... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_global_feature_importance[1-genetic] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_permitted_range[1-1-permitted_range0-kdtree] - AttributeError: 'SimpleImputer' ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[kdtree-2-2-genetic] - AttributeError: 'SimpleImputer' object ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[random-2-2-random] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[100-3-genetic] - AttributeError: 'SimpleImputer' obj... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[random-2-2-kdtree] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_zero_totalcfs[1-kdtree] - AttributeError: 'SimpleImputer' object has no att... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[kdtree-2-2-kdtree] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[100-3-kdtree] - AttributeError: 'SimpleImputer' obje... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[kdtree-2-2-random] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_desired_class[random-2-2-genetic] - AttributeError: 'SimpleImputer' object ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[100-3-random] - AttributeError: 'SimpleImputer' obje... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[opposite-3-random] - AttributeError: 'SimpleImputer'... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseUserConfigValidations::test_generate_counterfactuals_user_config_validations[generate_counterfactuals-kdtree] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[opposite-3-kdtree] - AttributeError: 'SimpleImputer'... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_zero_cfs_internal[all-0-None-0-None-kdtree] - AttributeError: 'SimpleImpute... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_incorrect_values_permitted_range[1-kdtree] - AttributeError: 'SimpleImputer' ob... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_unsupported_multiclass[opposite-3-genetic] - AttributeError: 'SimpleImputer... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseMultiClassClassification::test_zero_cfs_internal[all-0-None-0-None-random] - AttributeError: 'SimpleImpute... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseUserConfigValidations::test_generate_counterfactuals_user_config_validations[global_feature_importance-kdtree] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseUserConfigValidations::test_generate_counterfactuals_user_config_validations[local_feature_importance-kdtree] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[100-random] - AttributeError: 'SimpleImputer' object h... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseUserConfigValidations::test_generate_counterfactuals_user_config_validations[feature_importance-kdtree] - ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[genetic] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_query_points[random] - ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_query_points[genetic] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[genetic] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[kdtree] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_unsupported_binary_class[100-genetic] - AttributeError: 'SimpleImputer' object ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_query_points[kdtree] - ... -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[random] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_global_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[kdtree] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseDataValidations::test_local_feature_importance_error_conditions_with_insufficient_cfs_per_query_point[random] -FAILED tests/test_dice_interface/test_explainer_base.py::TestExplainerBaseBinaryClassification::test_check_any_counterfactuals_computed[kdtree] - AttributeError: 'SimpleImputer' ob... -ERROR tests/test_notebooks.py -ERROR tests/test_dice_interface/test_dice_genetic.py -ERROR tests/test_dice_interface/test_dice_random.py -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_KD_tree_counterfactual_explanations_output[0-1] - AttributeError: 'SimpleImputer' objec... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_features_to_vary[0-1-features_to_vary0] - AttributeError: 'SimpleImputer' object has no... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_permitted_range[0-1-permitted_range0] - AttributeError: 'SimpleImputer' object has no a... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_permitted_range_categorical[0-4-permitted_range0] - AttributeError: 'SimpleImputer' obj... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_duplicates[0-2] - AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_index[linear-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryVarsClassificationMethods::test_KD_tree_output[None-0-1] - AttributeError: 'SimpleImputer' object has no attribute ... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_index[binary-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_index[None-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_fit_dtype' -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryVarsClassificationMethods::test_KD_tree_counterfactual_explanations_output[0-1] - AttributeError: 'SimpleImputer' o... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDMultiClassificationMethods::test_KD_tree_output[linear-2-3] - AttributeError: 'SimpleImputer' object has no attribute '_f... -ERROR tests/test_data_interface/test_public_data_interface.py::TestPublicDataMethods::test_feature_precision - FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc4381... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDMultiClassificationMethods::test_KD_tree_output[binary-2-3] - AttributeError: 'SimpleImputer' object has no attribute '_f... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDMultiClassificationMethods::test_KD_tree_output[None-2-3] - AttributeError: 'SimpleImputer' object has no attribute '_fit... -ERROR tests/test_data_interface/test_public_data_interface.py::TestPublicDataMethods::test_permitted_range - FileNotFoundError: [Errno 2] No such file or directory: '/tmp/vsc43810/... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_invalid_query_instance[None-0-4-features_to_vary0-permitted_range0] - AttributeError: '... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_KD_tree_output[linear-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_KD_tree_output[binary-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryVarsClassificationMethods::test_invalid_query_instance[None-0-4-features_to_vary0-permitted_range0] - AttributeErro... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryClassificationMethods::test_KD_tree_output[None-0-1] - AttributeError: 'SimpleImputer' object has no attribute '_fi... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryVarsClassificationMethods::test_KD_tree_output[linear-0-1] - AttributeError: 'SimpleImputer' object has no attribut... -ERROR tests/test_dice_interface/test_dice_KD.py::TestDiceKDBinaryVarsClassificationMethods::test_KD_tree_output[binary-0-1] - AttributeError: 'SimpleImputer' object has no attribut... -==================================================== 78 failed, 94 passed, 6 skipped, 966 warnings, 25 errors in 146.71s (0:02:26) ==================================================== diff --git a/117_dice/old_logz/easybuild-run_cmd-s0as20e8.log b/117_dice/old_logz/easybuild-run_cmd-s0as20e8.log deleted file mode 100644 index 3563ec7d..00000000 --- a/117_dice/old_logz/easybuild-run_cmd-s0as20e8.log +++ /dev/null @@ -1,59 +0,0 @@ -# output for command: /apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/dice-ml/0.9-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/diceml/0.9/foss-2022a/jsonschema/jsonschema-4.17.3 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -ERROR: Exception: -Traceback (most recent call last): - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper - status = run_func(*args) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper - return func(self, options, args) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/commands/install.py", line 339, in run - requirement_set = resolver.resolve( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 75, in resolve - collected = self.factory.collect_root_requirements(root_reqs) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 506, in collect_root_requirements - req = self._make_requirement_from_install_req( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 468, in _make_requirement_from_install_req - cand = self._make_candidate_from_link( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link - self._link_candidate_cache[link] = LinkCandidate( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 288, in __init__ - super().__init__( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ - self.dist = self._prepare() - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 227, in _prepare - dist = self._prepare_distribution() - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 299, in _prepare_distribution - return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 487, in prepare_linked_requirement - return self._prepare_linked_requirement(req, parallel_builds) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 556, in _prepare_linked_requirement - dist = _get_prepared_distribution( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 58, in _get_prepared_distribution - abstract_dist.prepare_distribution_metadata(finder, build_isolation) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", line 47, in prepare_distribution_metadata - self.req.prepare_metadata() - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/req/req_install.py", line 522, in prepare_metadata - self.metadata_directory = generate_metadata( - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", line 35, in generate_metadata - distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", line 188, in prepare_metadata_for_build_wheel - return self._call_hook('prepare_metadata_for_build_wheel', { - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", line 332, in _call_hook - raise BackendUnavailable(data.get('traceback', '')) -pip._vendor.pep517.wrappers.BackendUnavailable: Traceback (most recent call last): - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 89, in _build_backend - obj = import_module(mod_path) - File "/apps/gent/RHEL8/cascadelake-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/importlib/__init__.py", line 126, in import_module - return _bootstrap._gcd_import(name[level:], package, level) - File "", line 1050, in _gcd_import - File "", line 1027, in _find_and_load - File "", line 992, in _find_and_load_unlocked - File "", line 241, in _call_with_frames_removed - File "", line 1050, in _gcd_import - File "", line 1027, in _find_and_load - File "", line 1004, in _find_and_load_unlocked -ModuleNotFoundError: No module named 'hatchling' - diff --git a/117_dice/old_logz/l.log b/117_dice/old_logz/l.log deleted file mode 100644 index e69de29b..00000000 diff --git a/119_PopGen/PopGen.eb b/119_PopGen/PopGen.eb deleted file mode 100644 index f2558a82..00000000 --- a/119_PopGen/PopGen.eb +++ /dev/null @@ -1,52 +0,0 @@ -easyblock = 'Tarball' - -name = 'PopGen' -version = '1.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://www.mobilityanalytics.org/popgen.html' -description = "Synthetic Population Generator" - -toolchain = {'name': 'foss', 'version': '2021b'} - -source_urls = ['https://www.mobilityanalytics.org/uploads/5/0/5/4/5054275/'] -sources = ['popgen_%(version_major)s_%(version_minor)s.zip'] -checksums = ['db72c69250b129d70291feba773048eb555c22245b2715d0356a208bb4e6ba6c'] - -dependencies = [ - ('Python', '2.7.18'), - ('SciPy-bundle', '2021.10', versionsuffix), - ('libxml2', '2.9.10'), # for lxml - ('libxslt', '1.1.34'), # for lxml - ('mysqlclient', '1.4.6', versionsuffix), -] - -exts_default_options = { - 'source_urls': [PYPI_SOURCE], - 'download_dep_fail': True, - 'use_pip': True, -} -exts_defaultclass = 'PythonPackage' - -exts_list = [ - ('pp', '1.6.5', { - 'checksums': ['469b7865c06517fe0dead3f51632274d350b682122df8ac8f3b69c75e5150626'], - }), - ('lxml', '4.9.2', { - 'checksums': ['2455cfaeb7ac70338b3257f41e21f0724f4b5b0c0e7702da67ee6c3640835b67'], - }), -] - -sanity_check_paths = { - 'files': ['popgen_manager.py'], - 'dirs': ['command_line_algorithm', 'synthesizer_algorithm'], -} - -sanity_check_commands = [ - "python $EBROOTPOPGEN/popgen_manager.py --help", - "export PYTHONNOUSERSITE=1 && python -m pip check", -] - -modextrapaths = {'PYTHONPATH': ['', 'lib/python%(pyshortver)s/site-packages']} - -moduleclass = 'tools' diff --git a/119_PopGen/mysqlclient-1.4.6-foss-2021b-Python-2.7.18.eb b/119_PopGen/mysqlclient-1.4.6-foss-2021b-Python-2.7.18.eb deleted file mode 100644 index 9c4f2a95..00000000 --- a/119_PopGen/mysqlclient-1.4.6-foss-2021b-Python-2.7.18.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'mysqlclient' -version = '1.4.6' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/PyMySQL/mysqlclient-python' -description = """Python interface to MySQL""" - -toolchain = {'name': 'GCC', 'version': '11.2.0'} - -sources = [SOURCE_TAR_GZ] -checksums = ['f3fdaa9a38752a3b214a6fe79d7cae3653731a53e577821f9187e67cbecb2e16'] - -dependencies = [ - ('Python', '2.7.18'), - ('MariaDB', '10.6.4'), -] - -# enable static linking to fix problem with unresolved symbols in mysql.so -prebuildopts = "sed -i 's/static = False/static = True/g' site.cfg && " - -options = {'modulename': 'MySQLdb'} - -moduleclass = 'lib' diff --git a/134_GapFiller/GapFiller.eb b/134_GapFiller/GapFiller.eb deleted file mode 100644 index 8e6de771..00000000 --- a/134_GapFiller/GapFiller.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GapFiller' -version = '2.1.2' - -homepage = 'https://sourceforge.net/projects/gapfiller' -description = """GapFiller is a seed-and-extend local assembler to fill the gap within paired reads. - It can be used for both DNA and RNA and it has been tested on Illumina data.""" - -toolchain = {'name': 'GCC', 'version': '11.3.0'} -toolchainopts = {'cstd': 'c++11', 'extra_cxxflags': '-fpermissive'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] -checksums = ['a4c5235b1ee17e277d08cc945dbfa05af084559e546a2b7f15c9c1b703f4b237'] - -dependencies = [ - ('Boost', '1.79.0'), - ('zlib', '1.2.12'), -] - -buildopts = 'bin_PROGRAMS=GapFiller ' -buildopts += 'GapFiller_CFLAGS="$CFLAGS $LDFLAGS -lz" GapFiller_CXXFLAGS="$CXXFLAGS $LDFLAGS -lz"' -installopts = 'bin_PROGRAMS=GapFiller ' - -postinstallcmds = ["cp -a README %(installdir)s"] - -sanity_check_paths = { - 'files': ['bin/GapFiller', 'README'], - 'dirs': [], -} - -sanity_check_commands = ["GapFiller --help"] - -moduleclass = 'bio' diff --git a/136_CmdStanR/CmdStanR-0.5.2-foss-2022a-R-4.2.1.eb b/136_CmdStanR/CmdStanR-0.5.2-foss-2022a-R-4.2.1.eb deleted file mode 100644 index 5d9ab3d4..00000000 --- a/136_CmdStanR/CmdStanR-0.5.2-foss-2022a-R-4.2.1.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'RPackage' - -name = 'CmdStanR' -version = '0.5.2' -versionsuffix = '-R-%(rver)s' - -homepage = 'https://mc-stan.org/cmdstanr' -description = "CmdStanR is a lightweight interface to Stan for R users" - -toolchain = {'name': 'foss', 'version': '2022a'} - - -sources = [{ - 'filename': 'cmdStanR-%(version)s.tar.gz', - 'git_config': { - 'url': 'https://github.com/stan-dev', - 'repo_name': 'cmdstanr', - 'tag': 'v%(version)s'}}] -checksums = ['ea5cd77c232f27a879be83721ed379a08283140f4696d67278ce2087784c10b3'] - -dependencies = [ - ('R', '4.2.1'), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['%(namelower)s'], -} - -options = {'modulename': '%(namelower)s'} - -moduleclass = 'bio' diff --git a/184_zarr/zarr-2.16.0-foss-2022b.eb b/184_zarr/zarr-2.16.0-foss-2022b.eb deleted file mode 100644 index 80fbe026..00000000 --- a/184_zarr/zarr-2.16.0-foss-2022b.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = "PythonBundle" - -name = 'zarr' -version = '2.16.0' - -homepage = 'https://zarr.readthedocs.io/en/stable/' -description = """Zarr is a Python package providing an implementation of compressed, -chunked, N-dimensional arrays, designed for use in parallel computing.""" - -toolchain = {'name': 'foss', 'version': '2022b'} -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('entrypoints', '0.4', { - 'checksums': ['b706eddaa9218a19ebcd67b56818f05bb27589b1ca9e8d797b74affad4ccacd4'], - }), - ('asciitree', '0.3.3', { - 'checksums': ['4aa4b9b649f85e3fcb343363d97564aa1fb62e249677f2e18a96765145cc0f6e'], - }), - ('fasteners', '0.18', { - 'checksums': ['cb7c13ef91e0c7e4fe4af38ecaf6b904ec3f5ce0dda06d34924b6b74b869d953'], - }), - ('monotonic', '1.6', { - 'source_tmpl': '%(version)s.tar.gz', - 'source_urls': ['https://github.com/atdt/monotonic/archive'], - 'checksums': ['9609c249aed584fd714811014870650d08d6f6414402b5a190663c49bf83b221'], - }), - ('numcodecs', '0.11.0', { - 'checksums': ['22838c6b3fd986bd9c724039b88870057f790e22b20e6e1cbbaa0de142dd59c4'], - }), - (name, version, { - 'checksums': ['db24b090616c638f65e33a6bc5d956d642221182961515ccbc28b17fb0d0b48c'], - }), -] - -moduleclass = 'data' - diff --git a/187_leafcutter/R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb b/187_leafcutter/R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb deleted file mode 100644 index eb0c0c7e..00000000 --- a/187_leafcutter/R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb +++ /dev/null @@ -1,1265 +0,0 @@ -easyblock = 'Bundle' - -name = 'R-bundle-Bioconductor' -version = '3.16' -versionsuffix = '-R-%(rver)s' - -homepage = 'https://bioconductor.org' -description = """Bioconductor provides tools for the analysis and coprehension - of high-throughput genomic data.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -builddependencies = [('pkgconf', '1.9.3')] - -dependencies = [ - ('R', '4.2.2'), - ('Boost', '1.81.0'), # for mzR - ('GSL', '2.7'), # for flowClust - ('HDF5', '1.14.0'), # for rhdf5 - ('arrow-R', '11.0.0.3', versionsuffix), # required by RcisTarget -] - -exts_default_options = { - 'source_urls': [ - 'https://bioconductor.org/packages/3.16/bioc/src/contrib/', - 'https://bioconductor.org/packages/3.16/bioc/src/contrib/Archive/%(name)s', - 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/', - 'https://bioconductor.org/packages/3.16/data/experiment/src/contrib/', - 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive - 'https://cran.r-project.org/src/contrib/', # current version of packages - 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages - ], - 'source_tmpl': '%(name)s_%(version)s.tar.gz' -} - -exts_defaultclass = 'RPackage' - -# check whether correct version is installed in extension filter -# (some versions in this bundle may be newer than the ones provided by R) -local_ext_version_check = "pkgver = packageVersion('%(ext_name)s'); if (pkgver != '%(ext_version)s') " -local_stop_msg = "stop('%(ext_name)s %(ext_version)s not installed, found ', pkgver, ' instead')" -exts_filter = ("R -q --no-save", "%s { %s }" % (local_ext_version_check, local_stop_msg)) - -# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends -# !! order of packages is important !! -# packages updated on 18th March 2023 -exts_list = [ - 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}), -] - -modextrapaths = {'R_LIBS_SITE': ''} - -sanity_check_paths = { - 'files': [], - 'dirs': ['AnnotationDbi', 'BiocManager', 'GenomicFeatures'], -} - -moduleclass = 'bio' diff --git a/187_leafcutter/leafcutter.eb b/187_leafcutter/leafcutter.eb deleted file mode 100644 index 5b8a58b5..00000000 --- a/187_leafcutter/leafcutter.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'RPackage' - -name = 'leafcutter' -version = '0.2.7' -versionsuffix = '-R-%(rver)s' - -homepage = "http://davidaknowles.github.io/leafcutter/index.html" -description = """Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: - easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. - For details please see our bioRxiv preprint and corresponding Nature Genetics publication. -""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -source_urls = ['https://github.com/davidaknowles/leafcutter/archive/'] -sources = ['v%(version)s.tar.gz'] -checksums = ['0e70ebce6be4b25bfabc0d489cbefa92ddede80380b1bbf4ec3a84182d10d1bd'] - -dependencies = [ - ('SAMtools', '1.17'), - ('RegTools', '1.0.0'), - ('Python', '3.10.8'), - ('R', '4.2.2'), - ('R-bundle-Bioconductor', '3.16', versionsuffix), -] - diff --git a/196_sccoda/Seaborn-0.12.2-foss-2023a.eb b/196_sccoda/Seaborn-0.12.2-foss-2023a.eb deleted file mode 100644 index a83838e3..00000000 --- a/196_sccoda/Seaborn-0.12.2-foss-2023a.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Seaborn' -version = '0.12.2' - -homepage = 'https://seaborn.pydata.org/' -description = """ Seaborn is a Python visualization library based on matplotlib. - It provides a high-level interface for drawing attractive statistical graphics. """ - -toolchain = {'name': 'gfbf', 'version': '2023a'} - -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '3.11.3'), - ('matplotlib', '3.7.2'), -] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/196_sccoda/sccoda.eb b/196_sccoda/sccoda.eb deleted file mode 100644 index 28a471c0..00000000 --- a/196_sccoda/sccoda.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'scCoda' -version = '0.1.9' - -homepage = 'https://github.com/theislab/scCODA' -description = """scCODA allows for identification of compositional changes in high-throughput -sequencing count data, especially cell compositions from scRNA-seq. It also provides a framework -for integration of cell-type annotated data directly from scanpy and other sources. -Aside from the scCODA model (Büttner, Ostner et al (2021)), the package also allows the easy -application of other differential testing methods.""" - -toolchain = {'name': 'gfbf', 'version': '2023a'} - -dependencies = [ - ('Python', '3.11.3'), - ('SciPy-bundle', '2023.07'), - ('Seaborn', '0.12.2'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - (name, version, { - 'sources': ['%(namelower)s-%(version)s.zip'], - }), -] - -moduleclass = 'bio' diff --git a/208_dorado/dorado-0.3.4-foss-2022a-CUDA-11.7.0.eb b/208_dorado/dorado-0.3.4-foss-2022a-CUDA-11.7.0.eb deleted file mode 100644 index 7654deaa..00000000 --- a/208_dorado/dorado-0.3.4-foss-2022a-CUDA-11.7.0.eb +++ /dev/null @@ -1,74 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'dorado' -version = '0.3.4' -versionsuffix = '-CUDA-%(cudaver)s' - -homepage = 'https://github.com/nanoporetech/dorado' -description = """Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.""" - -toolchain = {'name': 'foss', 'version': '2022a'} -toolchainopts = {'usempi': True} - -source_urls = ['https://github.com/nanoporetech/dorado/archive/'] -sources = [{ - 'git_config': { - 'url': 'https://github.com/nanoporetech', - 'repo_name': name, - 'tag': 'v%(version)s', - 'recursive': True, - }, - 'filename': SOURCE_TAR_GZ, -}] -checksums = [None] - -builddependencies = [ - ('binutils', '2.38'), - ('CMake', '3.24.3'), -] - -dependencies = [ - ('CUDA', '11.7.0', '', SYSTEM), - ('OpenSSL', '1.1', '', SYSTEM), - ('PyTorch', '1.12.0', '-CUDA-%(cudaver)s'), - ('HDF5', '1.12.2'), - ('zstd', '1.5.2'), - ('HTSlib', '1.15.1'), - ('kineto', '0.4.0'), - ('libaec', '1.0.6'), -] - -# don't link to OpenSSL static libraries -# fix for CMake Error "missing: OPENSSL_CRYPTO_LIBRARY" (if only shared OpenSSL libraries are available) -preconfigopts = "sed -i '/OPENSSL_USE_STATIC_LIBS TRUE/d' ../dorado/cmake/OpenSSL.cmake && " -preconfigopts += "export OPENSSL_ROOT_DIR=$EBROOTOPENSSL && " -# link in the ssl and crypto libs, to fix: -# undefined reference to symbol 'SSL_get_peer_certificate@@OPENSSL_1_1_0' -preconfigopts += "sed -i 's/OpenSSL::SSL/ssl\\n crypto/g' ../dorado/CMakeLists.txt && " - -# don't use vendored HTSlib, use provided HTSlib dependency -preconfigopts += "rm -r ../dorado/dorado/3rdparty/htslib/ && " -preconfigopts += "sed -i '/add_dependencies.*htslib_project/d' ../dorado/CMakeLists.txt && " -preconfigopts += "sed -i '/Htslib.cmake/d' ../dorado/CMakeLists.txt && " -# link with -lhts, not -lhtslib -preconfigopts += "sed -i 's/htslib/hts/g' ../dorado/CMakeLists.txt && " - -# requested_bytes is not supported by PyTorch 1.13.1, but reserved_bytes is -# see also https://github.com/nanoporetech/dorado/issues/364 -preconfigopts += "sed -i 's/requested_bytes/reserved_bytes/g' ../dorado/dorado/nn/CudaCRFModel.cpp && " - -configopts = "-DDORADO_INSTALL_PATH=%(installdir)s " -configopts += "-DCUDA_TOOLKIT_ROOT_DIR=$EBROOTCUDA -DCMAKE_CUDA_COMPILER=$EBROOTCUDA/bin/nvcc " -configopts += "-DDORADO_LIBTORCH_DIR=$EBROOTPYTORCH/lib -DHTSLIB_LIBRARIES=hts " -# add -pthread flag (in addition to -lpthread) to avoid linking error: -# in function `_GLOBAL__sub_I_mutex.cc': mutex.cc:(.text.startup+0x17): undefined reference to `pthread_atfork' -configopts += '-DCMAKE_C_FLAGS="$CFLAGS -pthread" ' - -sanity_check_paths = { - 'files': ['bin/dorado'], - 'dirs': [], -} - -sanity_check_commands = ["dorado basecaller --help"] - -moduleclass = 'bio' diff --git a/208_dorado/dorado-0.5.1-foss-2022a-CUDA-11.7.0.eb b/208_dorado/dorado-0.5.1-foss-2022a-CUDA-11.7.0.eb deleted file mode 100644 index 54b39322..00000000 --- a/208_dorado/dorado-0.5.1-foss-2022a-CUDA-11.7.0.eb +++ /dev/null @@ -1,74 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'dorado' -version = '0.5.1' -versionsuffix = '-CUDA-%(cudaver)s' - -homepage = 'https://github.com/nanoporetech/dorado' -description = """Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.""" - -toolchain = {'name': 'foss', 'version': '2022a'} -# -Wno-error option is required to fix: -# error: void {anonymous}::convert_f32_to_f16_impl(c10::Half*, const float*, std::size_t) defined but not used -toolchainopts = {'usempi': True, 'extra_cxxflags': "-Wno-error=unused-function"} - -source_urls = ['https://github.com/nanoporetech/dorado/archive/'] -sources = [{ - 'git_config': { - 'url': 'https://github.com/nanoporetech', - 'repo_name': name, - 'tag': 'v%(version)s', - 'recursive': True, - }, - 'filename': SOURCE_TAR_GZ, -}] -checksums = [None] - -builddependencies = [ - ('binutils', '2.38'), - ('CMake', '3.24.3'), -] - -dependencies = [ - ('CUDA', '11.7.0', '', SYSTEM), - ('OpenSSL', '1.1', '', SYSTEM), - ('PyTorch', '1.12.0', '-CUDA-%(cudaver)s'), - ('HDF5', '1.12.2'), - ('zstd', '1.5.2'), - ('HTSlib', '1.15.1'), - ('kineto', '0.4.0'), - ('libaec', '1.0.6'), -] - -# don't link to OpenSSL static libraries -# fix for CMake Error "missing: OPENSSL_CRYPTO_LIBRARY" (if only shared OpenSSL libraries are available) -preconfigopts = "sed -i '/OPENSSL_USE_STATIC_LIBS TRUE/d' ../dorado/cmake/OpenSSL.cmake && " -preconfigopts += "export OPENSSL_ROOT_DIR=$EBROOTOPENSSL && " -# link in the ssl and crypto libs, to fix: -# undefined reference to symbol 'SSL_get_peer_certificate@@OPENSSL_1_1_0' -preconfigopts += "sed -i 's/OpenSSL::SSL/ssl\\n crypto/g' ../dorado/dorado/utils/CMakeLists.txt && " - -# don't use vendored HTSlib, use provided HTSlib dependency -preconfigopts += "rm -r ../dorado/dorado/3rdparty/htslib/ && " -preconfigopts += "sed -i '/add_dependencies.*htslib_project/d' ../dorado/CMakeLists.txt && " -preconfigopts += "sed -i '/add_dependencies.*htslib_project/d' ../dorado/dorado/utils/CMakeLists.txt && " -preconfigopts += "sed -i '/Htslib.cmake/d' ../dorado/CMakeLists.txt && " -# link with -lhts, not -lhtslib -preconfigopts += "sed -i 's/htslib/hts/g' ../dorado/CMakeLists.txt && " -preconfigopts += "sed -i 's/htslib/hts/g' ../dorado/dorado/utils/CMakeLists.txt && " - -configopts = "-DDORADO_INSTALL_PATH=%(installdir)s " -configopts += "-DCUDA_TOOLKIT_ROOT_DIR=$EBROOTCUDA -DCMAKE_CUDA_COMPILER=$EBROOTCUDA/bin/nvcc " -configopts += "-DDORADO_LIBTORCH_DIR=$EBROOTPYTORCH/lib " -# add -pthread flag (in addition to -lpthread) to avoid linking error: -# in function `_GLOBAL__sub_I_mutex.cc': mutex.cc:(.text.startup+0x17): undefined reference to `pthread_atfork' -configopts += '-DCMAKE_C_FLAGS="$CFLAGS -pthread" ' - -sanity_check_paths = { - 'files': ['bin/dorado'], - 'dirs': [], -} - -sanity_check_commands = ["dorado basecaller --help"] - -moduleclass = 'bio' diff --git a/245_PySCF/Block-1.5.3-20200525-foss-2022b.eb b/245_PySCF/Block-1.5.3-20200525-foss-2022b.eb deleted file mode 100644 index 8671a9fb..00000000 --- a/245_PySCF/Block-1.5.3-20200525-foss-2022b.eb +++ /dev/null @@ -1,53 +0,0 @@ -easyblock = 'MakeCp' - -name = 'Block' -version = '1.5.3-20200525' -_commit = 'f95317b08043b7c531289576d59ad74a6d920741' - -homepage = 'https://sanshar.github.io/Block/' -description = """Block implements the density matrix renormalization group (DMRG) algorithm for -quantum chemistry.""" - -toolchain = {'name': 'foss', 'version': '2022b'} -toolchainopts = {'cstd': 'c++11', 'pic': True} - -# Version 1.5 is a major rewrite of Block that was named at some point StackBlock -# sources are available in sanshar/StackBlock -# sources at sanshar/Block@b0e3671aad and pyscf/Block@db27636b76 correspond to version 1.1.1 -source_urls = ['https://github.com/sanshar/StackBlock/archive'] -sources = [{'download_filename': '%s.tar.gz' % _commit, 'filename': '%(version)s.tar.gz'}] -patches = [ - 'Block-1.5.3_use-eb-environment.patch', - 'Block-1.5.3_replace_mpi_cxx_binds_with_boost_mpi.patch', -] -checksums = [ - {'1.5.3-20200525.tar.gz': '8d793c5e460d7747a0adcb06ce4b457c6750cf2d42cead1d060db8b44643c3b1'}, - {'Block-1.5.3_use-eb-environment.patch': '7f3e8a52f28d251441d20dfde1f9cb8cdc0c34216defab61cc6980e540a6cf60'}, - {'Block-1.5.3_replace_mpi_cxx_binds_with_boost_mpi.patch': - 'f53f1f88cb7b12ab38d1313f93a9bbd31c745dca1beca7a8d51d00e0ae4e762f'}, -] - -dependencies = [ - ('Boost.MPI', '1.83.0'), -] - -buildopts = [ - # Multi-threaded build (block.spin_adapted-serial) - 'OPENMP="yes" EXECUTABLE="block.spin_adapted-serial"', - # MPI build (block.spin_adapted) - 'USE_MPI="yes"', -] - -files_to_copy = [(['block.spin_adapted*'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/block.spin_adapted', 'bin/block.spin_adapted-serial'], - 'dirs': [], -} - -sanity_check_commands = [ - "block.spin_adapted-serial --version", - "%(mpi_cmd_prefix)s block.spin_adapted --version", -] - -moduleclass = 'phys' diff --git a/245_PySCF/CPPE-0.3.1-GCC-12.2.0.eb b/245_PySCF/CPPE-0.3.1-GCC-12.2.0.eb deleted file mode 100644 index cb04681b..00000000 --- a/245_PySCF/CPPE-0.3.1-GCC-12.2.0.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'CPPE' -version = '0.3.1' - -homepage = 'https://github.com/maxscheurer/cppe' -description = """CPPE is an open-source, light-weight C++ and Python library for Polarizable -Embedding (PE)1,2 calculations. It provides an easy-to-use API to implement PE -for ground-state self-consistent field (SCF) calculations and post-SCF methods. -A convenient Python interface is also available.""" - -toolchain = {'name': 'GCC', 'version': '12.2.0'} - -github_account = 'maxscheurer' -source_urls = [GITHUB_LOWER_SOURCE] -sources = ['v%(version)s.tar.gz'] -checksums = ['38d4230ba3ace78936049c23ad4b1fe9e704fd250ec57cc9733cb3904b62cf7c'] - -builddependencies = [ - ('CMake', '3.24.3'), - ('pybind11', '2.10.3'), -] - -dependencies = [ - ('Python', '3.10.8'), -] - -exts_defaultclass = 'PythonPackage' -exts_default_options = { - 'download_dep_fail': True, - 'use_pip': True, -} -exts_list = [ - ('cppe', version, { - 'source_urls': [PYPI_SOURCE], - 'checksums': ['b0aef578d6919f8c103d4d4a9fcd3db481bd73c59c157985f52bf62477425d6c'], - }), -] - -sanity_check_paths = { - 'files': ['lib/libcppe.%s' % SHLIB_EXT], - 'dirs': ['include/cppe', 'lib/python%(pyshortver)s/site-packages', 'share/cmake'], -} - -modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} - -moduleclass = 'chem' diff --git a/245_PySCF/Dice-20231208-foss-2022b.eb b/245_PySCF/Dice-20231208-foss-2022b.eb deleted file mode 100644 index 8c478e78..00000000 --- a/245_PySCF/Dice-20231208-foss-2022b.eb +++ /dev/null @@ -1,46 +0,0 @@ -easyblock = 'MakeCp' - -name = 'Dice' -version = '20231208' -_commit = '4fcc2875be210af66d167eb4f8af17faf2190dcc' - -homepage = 'https://github.com/sanshar/Dice' -description = """Dice contains code for performing SHCI, VMC, GFMC, DMC, FCIQMC, stochastic MRCI -and SC-NEVPT2, and AFQMC calculations with a focus on ab initio systems.""" - -toolchain = {'name': 'foss', 'version': '2022b'} -toolchainopts = {'cstd': 'c++14'} - -github_account = 'sanshar' -source_urls = [GITHUB_SOURCE] -sources = [{'download_filename': '%s.tar.gz' % _commit, 'filename': SOURCE_TAR_GZ}] -checksums = ['65c1b9a8a2f9b91bc3570e755e7c8ae6492a4b34ae5018c550388f9c71026a5b'] - -builddependencies = [ - ('Eigen', '3.4.0'), - ('git', '2.38.1', '-nodocs'), -] - -dependencies = [ - ('Boost.MPI', '1.83.0'), - ('HDF5', '1.14.0'), -] - -# Use build environment defined by EB -prebuildopts = "sed -i 's/^FLAGS_BASE =.*/FLAGS_BASE=$(CXXFLAGS) -g -w -I. $(CPPFLAGS)/' Makefile && " -buildopts = 'CXX="$MPICXX" USE_INTEL="no" HAS_AVX2="no" ' # avoid changes to -march -buildopts += 'INCLUDE_MKL="-I${EBROOTOPENBLAS}/include" LIB_MKL="${LIBBLAS}" ' # use OpenBLAS -buildopts += 'GIT_BRANCH="master" GIT_HASH="%s"' % _commit -buildopts += 'BOOST="${EBROOTBOOSTMPI}" ' -buildopts += 'EIGEN="${EBROOTEIGEN}/include" ' -buildopts += 'HDF5="${EBROOTHDF5}" ' - -files_to_copy = ['bin'] - -_binaries = ['Dice', 'DQMC', 'FCIQMC', 'GFMC', 'ICPT', 'VMC', 'ZDice2', 'ZSHCI'] -sanity_check_paths = { - 'files': ['bin/%s' % x for x in _binaries], - 'dirs': [], -} - -moduleclass = 'chem' diff --git a/245_PySCF/NECI-20230620-foss-2022b.eb b/245_PySCF/NECI-20230620-foss-2022b.eb deleted file mode 100644 index 02de75ee..00000000 --- a/245_PySCF/NECI-20230620-foss-2022b.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'CMakeMakeCp' -name = 'NECI' -version = '20230620' -_commit = '558e88c5ae6c30d0505a9badbc69111be0866ba1' - -homepage = 'https://github.com/ghb24/NECI_STABLE' -description = """Standalone NECI codebase designed for FCIQMC and other stochastic quantum -chemistry methods.""" - -toolchain = {'name': 'foss', 'version': '2022b'} -toolchainopts = {'usempi': True} - -sources = [{ - 'git_config': { - 'url': 'https://github.com/ghb24', - 'repo_name': 'NECI_STABLE', - 'recursive': True, - 'commit': _commit, - }, - 'filename': SOURCE_TAR_GZ, -}] -checksums = ['db8533219369600dcdb82b6d56f1f02a5e0058be6cc26bc26597d3471162d614'] - -builddependencies = [ - ('CMake', '3.24.3'), - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), -] - -dependencies = [ - ('HDF5', '1.14.0'), -] - -# enable support for HDF5 -configopts = "-DENABLE_HDF5=ON" - -test_cmd = 'ctest' -runtest = '-j' - -files_to_copy = ['bin', 'lib', (['modules'], 'include')] - -_binaries = ['dneci', 'kdneci', 'kmneci', 'kneci', 'mneci', 'neci'] -sanity_check_paths = { - 'files': ['bin/%s' % x for x in _binaries] + ['lib/lib%s.a' % x for x in _binaries], - 'dirs': ['include'], -} - -moduleclass = 'chem' diff --git a/245_PySCF/PyBerny-0.6.3-foss-2022b.eb b/245_PySCF/PyBerny-0.6.3-foss-2022b.eb deleted file mode 100644 index 570de283..00000000 --- a/245_PySCF/PyBerny-0.6.3-foss-2022b.eb +++ /dev/null @@ -1,38 +0,0 @@ -# Author: Pavel Grochal (INUITS) -# License: GPLv2 - -easyblock = 'PythonBundle' - -name = 'PyBerny' -version = '0.6.3' - -homepage = 'https://github.com/jhrmnn/pyberny' -description = """PyBerny is an optimizer of molecular geometries with respect to the total energy, -using nuclear gradient information.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), -] - -use_pip = True - -exts_list = [ - ('pyberny', version, { - 'modulename': 'berny', - 'checksums': ['b4bd9d3d2d58261e8f1d91b8204cc563617044d4b9daf6aae8feee31893cb336'], - }), -] - -sanity_pip_check = True - -sanity_check_paths = { - 'files': ['bin/berny'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = ["berny -h"] - -moduleclass = 'chem' diff --git a/245_PySCF/PyCheMPS2-1.8.12-foss-2022b.eb b/245_PySCF/PyCheMPS2-1.8.12-foss-2022b.eb deleted file mode 100644 index 8b8ff5ae..00000000 --- a/245_PySCF/PyCheMPS2-1.8.12-foss-2022b.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'PyCheMPS2' -version = '1.8.12' - -homepage = 'https://sebwouters.github.io/CheMPS2' -description = """PyCheMPS2 is a python interface to CheMPS2, for compilation without -MPI. CheMPS2 is a scientific library which contains a spin-adapted -implementation of the density matrix renormalization group (DMRG) -for ab initio quantum chemistry.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('CheMPS2', version), -] - -use_pip = True - -exts_list = [ - (name, version, { - 'modulename': '%(name)s', - 'source_urls': ['https://github.com/SebWouters/CheMPS2/archive/'], - 'source_tmpl': 'v%(version)s.tar.gz', - 'checksums': ['eef1b92d74ac07fde58c043f64e8cac02b5400c209c44dcbb51641f86e0c7c83'], - 'install_src': './%(name)s', - }), -] - -sanity_pip_check = True - -moduleclass = 'chem' diff --git a/245_PySCF/PySCF-2.4.0-foss-2022b.eb b/245_PySCF/PySCF-2.4.0-foss-2022b.eb deleted file mode 100644 index 2474dfd7..00000000 --- a/245_PySCF/PySCF-2.4.0-foss-2022b.eb +++ /dev/null @@ -1,127 +0,0 @@ -easyblock = 'CMakeMakeCp' -name = 'PySCF' -version = '2.4.0' - -homepage = 'http://www.pyscf.org' -description = "PySCF is an open-source collection of electronic structure modules powered by Python." - -toolchain = {'name': 'foss', 'version': '2022b'} - -source_urls = ['https://github.com/pyscf/pyscf/archive/'] -sources = ['v%(version)s.tar.gz'] -checksums = ['814240aa73f57ba96aee8264e3914c09f96ebdce1e42784da4b5e9a474ecb280'] - -builddependencies = [ - ('CMake', '3.24.3'), - ('pybind11', '2.10.3'), # needed by zquatev -] - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), # for numpy, scipy - ('h5py', '3.8.0'), - ('libcint', '5.4.0'), - ('libxc', '6.1.0'), - ('XCFun', '2.1.1'), - ('CPPE', '0.3.1'), # extra - ('PyBerny', '0.6.3'), # extra - ('PyCheMPS2', '1.8.12'), # needed by dmrgscf - ('Block', '1.5.3-20200525'), # needed by dmrgscf - ('NECI', '20230620'), # needed by fciqmc - ('Dice', '20231208'), # needed by icmpspt -] - -exts_defaultclass = 'PythonPackage' -exts_default_options = { - 'download_dep_fail': True, - 'use_pip': True, - 'modulename': 'pyscf.%(name)s', - 'source_urls': ['https://github.com/pyscf/%(name)s/archive/'], - 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], -} - -# The following list of extensions is equivalent to installing PySCF with extras: -# all + dmrgscf + fciqmcscf + hci + mbd + tblis + zquatev -exts_list = [ - # extensions in 'all' extra - ('dftd3', '94091d8', { - 'checksums': ['6616e7f28a90ca00c3def30dd22c4580f5b555af5c61fec2cb09cc6dd4e7bbff'], - }), - ('doci', '08079a9', { - 'checksums': ['f492ba45dfe50c9b459e53a946a677528af0dc2097ff77ea3767aa4f46c5d9ba'], - }), - ('icmpspt', '50c386e', { - }), - ('properties', '92a4df7', { - 'modulename': 'pyscf.prop', - 'checksums': ['df5456315855c7a4f5858b244461793f2cbc21f6a6c0328039838ad85913c79d'], - }), - ('qsdopt', '9d57e34', { - 'checksums': ['cc639150e5f9efad8ffe496b3dccd2952a1f60fdad51f611cffba701892b384e'], - }), - ('semiempirical', 'c00ac4a', { - 'checksums': ['4d0016a321c91ace2f1c18e4001df3f6c8de9c96602c391353102b6ad4e14076'], - }), - ('shciscf', 'e8985e7', { - 'checksums': ['96032337e8877478d410f2edd8490d267a8b6ddb8fad6152b201f4da912fd694'], - }), - ('MCfun', '0.2.0', { - 'modulename': 'mcfun', - 'source_urls': ['https://github.com/Multi-collinear/%(name)s/archive/'], - 'checksums': ['482397f0c964f27ff15687e4b56554c51e0f249e2ad5b96fd1d6cb8a2f7f2c72'], - }), - ('pyqmc', '0.6.0', { - 'modulename': 'pyqmc', - 'source_urls': ['https://github.com/WagnerGroup/%(name)s/archive/'], - 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], - 'checksums': ['ecda2045577dc3b48149d5e92c88ce19d60b8c2a2e2c1705542c176973f5e1c8'], - }), - # extensions on top of 'all' extra - ('dmrgscf', '4ff57bf', { - 'checksums': [ - ], - }), - ('fciqmc', 'ee98fb4', { - 'modulename': 'pyscf.fciqmcscf', - 'checksums': [ - ], - }), - ('mbd', '485c18c', { - 'checksums': [ - ], - }), - ('naive-hci', '0c28d6e', { - 'modulename': 'pyscf.hci', - 'checksums': ['de247d17b80133655df5966341e5adb691b0df150cd9b0f1980cf62ec55229d5'], - }), - ('tblis', '0d4dfd2', { - 'modulename': 'pyscf.tblis_einsum', - 'source_urls': ['https://github.com/pyscf/pyscf-tblis/archive/'], - 'checksums': ['55fea57bfee2cf8aef577d8d2adc1f273aa39e3ee5e6cfc2442ccc3b5353a847'], - }), - ('zquatev', '4eb41b1', { - 'modulename': 'zquatev', - 'source_urls': ['https://github.com/sunqm/%(name)s/archive/'], - 'checksums': ['4caf08e3831a5d86e6bc22f3b4028cc159101cb9658d09de16e382e268a5a2e9'], - # use pybind11 from EB - 'preinstallopts': "sed -i 's/add_subdirectory(pybind11)/find_package(pybind11 REQUIRED)/' CMakeLists.txt && ", - }), -] - -start_dir = 'pyscf/lib' -configopts = "-DBUILD_LIBCINT=OFF -DBUILD_LIBXC=OFF -DBUILD_XCFUN=OFF" -prebuildopts = "export PYSCF_INC_DIR=$EBROOTQCINT/include:$EBROOTLIBXC/lib && " - -_py_site_packages = 'lib/python%(pyshortver)s/site-packages' -files_to_copy = [(['pyscf'], _py_site_packages)] - -sanity_check_paths = { - 'files': [_py_site_packages + '/pyscf/__init__.py'], - 'dirs': [_py_site_packages + d for d in ['/pyscf/data', '/pyscf/lib']], -} - -sanity_check_commands = ["python -c 'import pyscf'"] - -modextrapaths = {'PYTHONPATH': _py_site_packages} - -moduleclass = 'chem' diff --git a/245_PySCF/XCFUN-2.1.1-GCCcore-12.3.0.eb b/245_PySCF/XCFUN-2.1.1-GCCcore-12.3.0.eb deleted file mode 100644 index 11a4eb62..00000000 --- a/245_PySCF/XCFUN-2.1.1-GCCcore-12.3.0.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'XCFun' -version = '2.1.1' - -homepage = 'https://xcfun.readthedocs.io' -description = """Arbitrary order exchange-correlation functional library""" - -toolchain = {'name': 'GCCcore', 'version': '12.3.0'} - -source_urls = ['https://github.com/dftlibs/xcfun/archive/'] -sources = ['v%(version)s.tar.gz'] -checksums = ['8b602df74c7be83d501532565deafd1b7881946d94789122f24c309a669298ab'] - -builddependencies = [ - ('binutils', '2.40'), - ('CMake', '3.26.3') -] - -modextravars = {'XCFun_DIR': '%(installdir)s/share/cmake/XCFun/'} - -sanity_check_paths = { - 'files': ['lib/libxcfun.%s' % SHLIB_EXT], - 'dirs': ['include/XCFun'] -} - -moduleclass = 'chem' diff --git a/245_PySCF/libcint-5.4.0-gfbf-2022b.eb b/245_PySCF/libcint-5.4.0-gfbf-2022b.eb deleted file mode 100644 index 8b2ffcfa..00000000 --- a/245_PySCF/libcint-5.4.0-gfbf-2022b.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'libcint' -version = '5.4.0' - -homepage = 'https://github.com/sunqm/libcint' -description = "libcint is an open source library for analytical Gaussian integrals." - -toolchain = {'name': 'gfbf', 'version': '2022b'} - -source_urls = ['https://github.com/sunqm/%(name)s/archive/'] -sources = ['v%(version)s.tar.gz'] -patches = ['%(name)s-4.4.0_remove_pyscftest.patch'] -checksums = [ - '42a8f2e9244e4575437e426e32cd1e60ef9559971c42a41f860c870efc745d99', # v5.4.0.tar.gz - '6449297a6aee30fef3d6a268aa892dea8dd5c3ca9669a50ae694ab9bcf17842d', # libcint-4.4.0_remove_pyscftest.patch -] - -builddependencies = [ - ('CMake', '3.24.3'), - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), -] - -configopts = "-DWITH_RANGE_COULOMB=on -DWITH_COULOMB_ERF=on -DWITH_F12=on -DENABLE_TEST=on" - -buildopts = 'VERBOSE=1' - -runtest = "test " -separate_build_dir = False # Must use the same directory for tests - -sanity_check_paths = { - 'files': ['include/cint.h', 'lib/%(name)s.so'], - 'dirs': [], -} - -moduleclass = 'chem' diff --git a/263_DeepLoc/DeepLoc.eb b/263_DeepLoc/DeepLoc.eb deleted file mode 100644 index 546c4bb8..00000000 --- a/263_DeepLoc/DeepLoc.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'DeepLoc' -version = '2.0' - -homepage = 'https://services.healthtech.dtu.dk/services/DeepLoc-2.0' -description = "DeepLoc 2.0 predicts the subcellular localization(s) of eukaryotic proteins" - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('matplotlib', '3.7.0'), - ('Biopython', '1.81'), - ('ONNX-Runtime', '1.16.3'), - ('ESM-2', '2.0.0'), # for fair-esm - ('PyTorch', '1.13.1'), - ('PyTorch-Lightning', '2.1.2'), - ('Transformers', '4.30.2'), - ('SentencePiece', '0.1.99'), - ('mygene', '3.2.2'), # required by bio -] - -use_pip = True - -local_deeploc_download_url = 'https://services.healthtech.dtu.dk/cgi-bin/sw_request?' -local_deeploc_download_url += 'software=deeploc&version=2.0&packageversion=2.0&platform=All' - -exts_list = [ - ('gprofiler-official', '1.0.0', { - 'checksums': ['5015b47f10fbdcb59c57e342e815c9c07afbe57cd3984154f75b845ddef2445d'], - 'modulename': 'gprofiler', - }), - ('bio', '1.6.2', { - 'sources': ['bio-%(version)s-py%(pymajver)s-none-any.whl'], - 'checksums': ['dcec8207f3993a7f41bd8205cde235218da3dc008175ae7bb7468276d8dacf71'], - 'modulename': 'biorun', - }), - (name, version, { - 'download_instructions': "Download via %s" % local_deeploc_download_url, - 'sources': ['deeploc-%(version)s.All.tar.gz'], - 'checksums': ['1741cf61cc38bba6307f1838c08ff9dd01386da09b8939610d15c27f98173651'], - 'modulename': 'DeepLoc2', - }), -] - -sanity_check_paths = { - 'files': ['bin/deeploc2'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [ - "deeploc2 --help", -] - -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/263_DeepLoc/ESM-2-2.0.0-foss-2022b.eb b/263_DeepLoc/ESM-2-2.0.0-foss-2022b.eb deleted file mode 100644 index 0eca3505..00000000 --- a/263_DeepLoc/ESM-2-2.0.0-foss-2022b.eb +++ /dev/null @@ -1,40 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'ESM-2' -version = '2.0.0' - -homepage = 'https://github.com/facebookresearch/esm' -description = """ESM-2 outperforms all tested single-sequence protein language models - across a range of structure prediction tasks. ESMFold harnesses the ESM-2 language model to generate - accurate structure predictions end to end directly from the sequence of a protein.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -builddependencies = [ - ('Java', '11', '', SYSTEM), # needed by ANTLR4 runtime -] - -dependencies = [ - ('Python', '3.10.8'), - ('PyTorch', '1.13.1'), -] - -use_pip = True -sanity_pip_check = True - -# omegaconf is required for esmfold (in addition to OpenFold-1.0.1) -exts_list = [ - ('antlr4-python3-runtime', '4.9.3', { - 'modulename': 'antlr4', - 'checksums': ['f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b'], - }), - ('omegaconf', '2.3.0', { - 'checksums': ['d5d4b6d29955cc50ad50c46dc269bcd92c6e00f5f90d23ab5fee7bfca4ba4cc7'], - }), - ('fair-esm', version, { - 'modulename': "esm, esm.pretrained", - 'checksums': ['4ed34d4598ec75ed6550a4e581d023bf8d4a8375317ecba6269bb68135f80c85'], - }), -] - -moduleclass = 'bio' diff --git a/263_DeepLoc/ONNX-1.15.0-foss-2022b.eb b/263_DeepLoc/ONNX-1.15.0-foss-2022b.eb deleted file mode 100644 index 01259318..00000000 --- a/263_DeepLoc/ONNX-1.15.0-foss-2022b.eb +++ /dev/null @@ -1,64 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'ONNX' -version = '1.15.0' - -homepage = 'https://onnx.ai' -description = """ -Open Neural Network Exchange (ONNX) is an open ecosystem that empowers AI -developers to choose the right tools as their project evolves. ONNX provides an -open source format for AI models, both deep learning and traditional ML. It -defines an extensible computation graph model, as well as definitions of -built-in operators and standard data types. Currently we focus on the -capabilities needed for inferencing (scoring).""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -sources = [SOURCELOWER_TAR_GZ] -patches = ['ONNX-1.15.0_fix-protobuf-linking.patch'] -checksums = [ - {'onnx-1.15.0.tar.gz': 'b18461a7d38f286618ca2a6e78062a2a9c634ce498e631e708a8041b00094825'}, - {'ONNX-1.15.0_fix-protobuf-linking.patch': '5c11eca5275a25d69f989571fe1f387b84c7334478356577f6f6349c5954f54d'}, -] - -builddependencies = [ - ('CMake', '3.24.3'), - # more recent setuptools required to fix: AttributeError: editable_mode - ('setuptools', '64.0.3'), -] - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('protobuf-python', '4.23.0'), - ('typing-extensions', '4.9.0'), -] - -use_pip = True -download_dep_fail = True - -# hardcode version in pyproject.toml rather than determining it dynamically -preinstallopts = """sed -i 's/"version",//g' pyproject.toml && """ -preinstallopts += """sed -i 's/readme = .*/version = "%(version)s"/g' pyproject.toml && """ - -# specify C++17 standard and link to protobuf shared library (also requires patch to use -DPROTOBUF_USE_DLLS); -# required to fix "error: 'string_view' in namespace 'std' does not name a type", -# see also https://github.com/onnx/onnx/issues/5430 -preinstallopts += "export CMAKE_ARGS='-DCMAKE_CXX_STANDARD=17 -DONNX_USE_PROTOBUF_SHARED_LIBS=ON' && " - -preinstallopts += 'env MAX_JOBS="%(parallel)s"' - -sanity_check_paths = { - 'files': ['bin/check-model', 'bin/check-node', 'bin/backend-test-tools'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [ - ('check-model', '-h'), - ('check-node', '-h'), - ('backend-test-tools', '-h'), -] - -sanity_pip_check = True - -moduleclass = 'devel' diff --git a/263_DeepLoc/ONNX-1.15.0_fix-protobuf-linking.patch b/263_DeepLoc/ONNX-1.15.0_fix-protobuf-linking.patch deleted file mode 100644 index 5368859c..00000000 --- a/263_DeepLoc/ONNX-1.15.0_fix-protobuf-linking.patch +++ /dev/null @@ -1,18 +0,0 @@ -fix for: undefined symbol: _ZN6google8protobuf8internal15ThreadSafeArena13thread_cache_E -see also https://bugs.archlinux.org/task/75242 -author: Kenneth Hoste (HPC-UGent) ---- onnx-1.15.0/CMakeLists.txt.orig 2024-01-05 21:11:09.060853188 +0100 -+++ onnx-1.15.0/CMakeLists.txt 2024-01-05 21:11:21.587828423 +0100 -@@ -46,10 +46,10 @@ - endif() - - if(ONNX_USE_PROTOBUF_SHARED_LIBS) -- if(MSVC) -+ #if(MSVC) - #TODO: if ONNX_USE_MSVC_STATIC_RUNTIME is ON, it may not work - add_definitions(-DPROTOBUF_USE_DLLS) -- endif() -+ #endif() - set(Protobuf_USE_STATIC_LIBS OFF) - else() - set(Protobuf_USE_STATIC_LIBS ON) diff --git a/263_DeepLoc/ONNX-Runtime-1.16.3-foss-2022b.eb b/263_DeepLoc/ONNX-Runtime-1.16.3-foss-2022b.eb deleted file mode 100644 index a94de01f..00000000 --- a/263_DeepLoc/ONNX-Runtime-1.16.3-foss-2022b.eb +++ /dev/null @@ -1,50 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'ONNX-Runtime' -version = '1.16.3' - -homepage = 'https://onnxruntime.ai' -description = """ONNX Runtime inference can enable faster customer experiences and lower costs, -supporting models from deep learning frameworks such as PyTorch and -TensorFlow/Keras as well as classical machine learning libraries such as -scikit-learn, LightGBM, XGBoost, etc. ONNX Runtime is compatible with different -hardware, drivers, and operating systems, and provides optimal performance by -leveraging hardware accelerators where applicable alongside graph optimizations -and transforms.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('ONNX', '1.15.0'), - ('flatbuffers-python', '23.1.4'), - ('sympy', '1.12'), -] - -use_pip = True - -local_whl_tmpl = 'onnxruntime-%%(version)s-cp310-cp310-manylinux_2_17_%s.manylinux2014_%s.whl' - -exts_list = [ - ('humanfriendly', '10.0', { - 'checksums': ['6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc'], - }), - ('coloredlogs', '15.0.1', { - 'checksums': ['7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0'], - }), - (name, version, { - 'source_urls': ['http://pypi.python.org/packages/source/o/onnxruntime'], - 'sources': [local_whl_tmpl % ('%(arch)s', '%(arch)s')], - 'checksums': [{ - local_whl_tmpl % ('x86_64', 'x86_64'): - 'ef2b1fc269cabd27f129fb9058917d6fdc89b188c49ed8700f300b945c81f889', - local_whl_tmpl % ('aarch64', 'aarch64'): - '5f91f5497fe3df4ceee2f9e66c6148d9bfeb320cd6a71df361c66c5b8bac985a', - }], - 'modulename': 'onnxruntime', - }), -] - -sanity_pip_check = True - -moduleclass = 'devel' diff --git a/263_DeepLoc/PyTorch-Lightning-2.1.2-foss-2022b.eb b/263_DeepLoc/PyTorch-Lightning-2.1.2-foss-2022b.eb deleted file mode 100644 index b1d36af5..00000000 --- a/263_DeepLoc/PyTorch-Lightning-2.1.2-foss-2022b.eb +++ /dev/null @@ -1,156 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'PyTorch-Lightning' -version = '2.1.2' - -homepage = 'https://pytorchlightning.ai' -description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers." - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - # dependencies from requirements/app/base.txt - ('aiohttp', '3.8.5'), - ('BeautifulSoup', '4.11.1'), - ('deepdiff', '6.7.1'), - # dependencies from requirements/pytorch/base.txt - ('PyTorch', '1.13.1'), - ('tqdm', '4.64.1'), - ('tensorboardX', '2.6.2.2'), - ('pydantic', '2.5.3'), - ('boto3', '1.34.10'), - ('typing-extensions', '4.9.0'), -] - -use_pip = True - -# dependencies from requirements/app/base.txt and requirements/pytorch/base.txt -exts_list = [ - ('commonmark', '0.9.1', { - 'checksums': ['452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60'], - }), - ('mdurl', '0.1.2', { - 'checksums': ['bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba'], - }), - ('markdown-it-py', '3.0.0', { - 'checksums': ['e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb'], - 'modulename': 'markdown_it', - }), - ('rich', '13.7.0', { - 'checksums': ['5cb5123b5cf9ee70584244246816e9114227e0b98ad9176eede6ad54bf5403fa'], - }), - ('PyJWT', '2.8.0', { - 'modulename': 'jwt', - 'checksums': ['57e28d156e3d5c10088e0c68abb90bfac3df82b40a71bd0daa20c65ccd5c23de'], - }), - ('starlette', '0.32.0.post1', { - 'checksums': ['e54e2b7e2fb06dff9eac40133583f10dfa05913f5a85bf26f427c7a40a9a3d02'], - }), - ('fastapi', '0.108.0', { - 'preinstallopts': "sed -i '/Framework :: Pydantic/d' pyproject.toml && ", - 'checksums': ['5056e504ac6395bf68493d71fcfc5352fdbd5fda6f88c21f6420d80d81163296'], - }), - ('sniffio', '1.3.0', { - 'checksums': ['e60305c5e5d314f5389259b7f22aaa33d8f7dee49763119234af3755c55b9101'], - }), - ('exceptiongroup', '1.2.0', { - 'checksums': ['91f5c769735f051a4290d52edd0858999b57e5876e9f85937691bd4c9fa3ed68'], - }), - ('anyio', '4.2.0', { - 'checksums': ['e1875bb4b4e2de1669f4bc7869b6d3f54231cdced71605e6e64c9be77e3be50f'], - }), - ('websocket-client', '1.7.0', { - 'modulename': 'websocket', - 'checksums': ['10e511ea3a8c744631d3bd77e61eb17ed09304c413ad42cf6ddfa4c7787e8fe6'], - }), - ('python_multipart', '0.0.6', { - 'checksums': ['e9925a80bb668529f1b67c7fdb0a5dacdd7cbfc6fb0bff3ea443fe22bdd62132'], - 'modulename': 'multipart', - }), - ('h11', '0.14.0', { - 'checksums': ['8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d'], - }), - ('uvicorn', '0.25.0', { - 'checksums': ['6dddbad1d7ee0f5140aba5ec138ddc9612c5109399903828b4874c9937f009c2'], - }), - ('lightning_cloud', '0.5.57', { - 'checksums': ['1d30427a2935a367e0bd19873decb564425f1b648901abab2da9318a8b88c80b'], - }), - ('itsdangerous', version, { - 'checksums': ['5dbbc68b317e5e42f327f9021763545dc3fc3bfe22e6deb96aaf1fc38874156a'], - }), - ('starsessions', '2.1.3', { - 'checksums': ['d20c5f277b64a86c16819f65ac50814ccdbd146776159e08c88b378b6612297d'], - }), - ('fsspec', '2023.12.2', { - 'checksums': ['8548d39e8810b59c38014934f6b31e57f40c1b20f911f4cc2b85389c7e9bf0cb'], - }), - ('croniter', '2.0.1', { - 'checksums': ['d199b2ec3ea5e82988d1f72022433c5f9302b3b3ea9e6bfd6a1518f6ea5e700a'], - }), - ('traitlets', '5.14.1', { - 'checksums': ['8585105b371a04b8316a43d5ce29c098575c2e477850b62b848b964f1444527e'], - }), - ('types-python-dateutil', '2.8.19.14', { - 'checksums': ['1f4f10ac98bb8b16ade9dbee3518d9ace017821d94b057a425b069f834737f4b'], - 'modulename': False, - }), - ('arrow', '1.3.0', { - 'preinstallopts': "PYTHONPATH=$PWD:$PYTHONPATH ", - 'checksums': ['d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85'], - }), - ('lightning-utilities', '0.10.0', { - 'checksums': ['9e31617eccbbadc6b737a2432fd7076ff8e24957f9c63aeba2530b189e19319c'], - }), - ('blessed', '1.20.0', { - 'checksums': ['2cdd67f8746e048f00df47a2880f4d6acbcdb399031b604e34ba8f71d5787680'], - }), - ('python-editor', '1.0.4', { - 'modulename': 'editor', - 'checksums': ['51fda6bcc5ddbbb7063b2af7509e43bd84bfc32a4ff71349ec7847713882327b'], - }), - ('readchar', '4.0.5', { - 'checksums': ['08a456c2d7c1888cde3f4688b542621b676eb38cd6cfed7eb6cb2e2905ddc826'], - }), - ('runs', '1.2.0', { - 'checksums': ['8804271011b7a2eeb0d77c3e3f556e5ce5f602fa0dd2a31ed0c1222893be69b7'], - }), - ('xmod', '1.8.1', { - 'checksums': ['38c76486b9d672c546d57d8035df0beb7f4a9b088bc3fb2de5431ae821444377'], - }), - ('editor', '1.6.3', { - 'checksums': ['6d004f3087d7c587c111cc88a7ac0436df3539297c6b24243dd5aa5bc5bdcc08'], - }), - ('inquirer', '3.2.0', { - 'checksums': ['93f4beaad9b887cc3a068198c40837c67eb42b39ea87b3e80fff2a7773e8f29a'], - }), - ('wrapt', '1.16.0', { - 'checksums': ['5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d'], - }), - ('aioitertools', '0.11.0', { - 'checksums': ['42c68b8dd3a69c2bf7f2233bf7df4bb58b557bca5252ac02ed5187bbc67d6831'], - }), - ('aiobotocore', '2.9.0', { - 'preinstallopts': """sed -i "s/botocore>.*',/botocore',/g" setup.py && """, - 'checksums': ['4dc1e20da4561ae662219ca95b20f923328c3106764a741bec00e98eb6680f7e'], - }), - ('s3fs', '2023.12.2', { - 'checksums': ['b5ec07062481bbb45cb061b31984c7188d106e292c27033039e024e4ba5740dc'], - }), - ('torchmetrics', '1.2.1', { - 'checksums': ['217387738f84939c39b534b20d4983e737cc448d27aaa5340e0327948d97ca3e'], - }), - ('pytorch-lightning', version, { - 'checksums': ['58e26406215f3bfafe1b9b5b4bf37c9b8cff16494f7fd60e4db1ae37461b2b28'], - }), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/dateutil-stubs'], -} - -sanity_pip_check = True - -moduleclass = 'lib' diff --git a/263_DeepLoc/Rust-1.75.0-GCCcore-12.2.0.eb b/263_DeepLoc/Rust-1.75.0-GCCcore-12.2.0.eb deleted file mode 100644 index d9b3ab11..00000000 --- a/263_DeepLoc/Rust-1.75.0-GCCcore-12.2.0.eb +++ /dev/null @@ -1,29 +0,0 @@ -name = 'Rust' -version = '1.75.0' - -homepage = 'https://www.rust-lang.org' -description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults, - and guarantees thread safety.""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -source_urls = ['https://static.rust-lang.org/dist/'] -sources = ['rustc-%(version)s-src.tar.gz'] -patches = ['Rust-1.70_sysroot-fix-interpreter.patch'] -checksums = [ - {'rustc-1.75.0-src.tar.gz': '5b739f45bc9d341e2d1c570d65d2375591e22c2d23ef5b8a37711a0386abc088'}, - {'Rust-1.70_sysroot-fix-interpreter.patch': '220129db55e022a98d25028da5dcc9f26b252dd995c3ac92f6312dbb1e362cb1'}, -] - -builddependencies = [ - ('binutils', '2.39'), - ('CMake', '3.24.3'), - ('Python', '3.10.8', '-bare'), - ('pkgconf', '1.9.3'), -] - -dependencies = [ - ('OpenSSL', '1.1', '', SYSTEM), -] - -moduleclass = 'lang' diff --git a/263_DeepLoc/SentencePiece-0.1.99-GCC-12.2.0.eb b/263_DeepLoc/SentencePiece-0.1.99-GCC-12.2.0.eb deleted file mode 100644 index b0776f52..00000000 --- a/263_DeepLoc/SentencePiece-0.1.99-GCC-12.2.0.eb +++ /dev/null @@ -1,65 +0,0 @@ -## -# Author: Robert Mijakovic -## -easyblock = 'Bundle' - -name = 'SentencePiece' -version = '0.1.99' - -homepage = 'https://github.com/google/sentencepiece' -description = "Unsupervised text tokenizer for Neural Network-based text generation." -github_account = 'google' - -toolchain = {'name': 'GCC', 'version': '12.2.0'} - -builddependencies = [ - ('CMake', '3.24.3'), -] - -dependencies = [ - ('Python', '3.10.8'), - ('gperftools', '2.14'), -] - -default_component_specs = { - 'source_urls': [GITHUB_LOWER_SOURCE], - 'sources': ['v%(version)s.tar.gz'], - 'checksums': ['63617eaf56c7a3857597dcd8780461f57dd21381b56a27716ef7d7e02e14ced4'], -} - -components = [ - (name, version, { - 'easyblock': 'CMakeMake', - 'separate_build_dir': True, - 'start_dir': '%(namelower)s-%(version)s', - }), - ('sentencepiece', version, { - 'easyblock': 'PythonPackage', - 'start_dir': '%(namelower)s-%(version)s/python', - 'prebuildopts': 'export PKG_CONFIG_PATH=%(installdir)s/lib/pkgconfig:$PKG_CONFIG_PATH && ', - 'preinstallopts': 'export PKG_CONFIG_PATH=%(installdir)s/lib/pkgconfig:$PKG_CONFIG_PATH && ', - 'use_pip': True, - 'download_dep_fail': True, - 'sanity_pip_check': True, - }), -] - -postinstallcmds = ['cp -a %(builddir)s/%(namelower)s-%(version)s/{data,doc} %(installdir)s/'] - -sanity_check_paths = { - 'files': ['bin/spm_%s' % x for x in ['decode', 'encode', 'export_vocab', 'normalize', 'train']] + - ['lib/libsentencepiece.%s' % SHLIB_EXT, 'lib/libsentencepiece_train.%s' % SHLIB_EXT] + - ['include/sentencepiece_processor.h', 'include/sentencepiece_trainer.h'], - 'dirs': ['lib/python%(pyshortver)s/site-packages', 'data', 'doc'], -} - -sanity_check_commands = [ - 'spm_train --help', - "python -c 'import sentencepiece'", -] - -modextrapaths = { - 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'] -} - -moduleclass = 'lib' diff --git a/263_DeepLoc/boto3-1.34.10-GCCcore-12.2.0.eb b/263_DeepLoc/boto3-1.34.10-GCCcore-12.2.0.eb deleted file mode 100644 index 08804838..00000000 --- a/263_DeepLoc/boto3-1.34.10-GCCcore-12.2.0.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'boto3' -version = '1.34.10' - -homepage = 'https://github.com/boto/boto3' -description = """Boto3 is the Amazon Web Services (AWS) Software Development Kit -(SDK) for Python, which allows Python developers to write software that makes -use of services like Amazon S3 and Amazon EC2.""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -builddependencies = [ - ('binutils', '2.39'), -] - -dependencies = [ - ('Python', '3.10.8'), -] - -exts_list = [ - ('botocore', '1.34.12', { - 'checksums': ['53dfc19d63f2b70821e9804b7ecfc5e50fc84d9bd6818359b27db629ef43ec59'], - }), - ('jmespath', '1.0.1', { - 'checksums': ['90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe'], - }), - ('s3transfer', '0.10.0', { - 'checksums': ['d0c8bbf672d5eebbe4e57945e23b972d963f07d82f661cabf678a5c88831595b'], - }), - (name, version, { - 'checksums': ['ea14bc081d9cb40291133f89b3ad9070be360e152d6a98263af7b97a6534b669'], - }), -] - -use_pip = True -sanity_pip_check = True - -moduleclass = 'lib' diff --git a/263_DeepLoc/deepdiff-6.7.1-GCCcore-12.2.0.eb b/263_DeepLoc/deepdiff-6.7.1-GCCcore-12.2.0.eb deleted file mode 100644 index 948367bb..00000000 --- a/263_DeepLoc/deepdiff-6.7.1-GCCcore-12.2.0.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'deepdiff' -version = '6.7.1' - -homepage = 'https://zepworks.com/deepdiff/current/' -description = """DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively.""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -builddependencies = [ - ('binutils', '2.39'), -] - -dependencies = [ - ('Python', '3.10.8'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('jsonpickle', '3.0.2', { - 'checksums': ['e37abba4bfb3ca4a4647d28bb9f4706436f7b46c8a8333b4a718abafa8e46b37'], - }), - ('ordered-set', '4.1.0', { - 'checksums': ['694a8e44c87657c59292ede72891eb91d34131f6531463aab3009191c77364a8'], - }), - (name, version, { - 'checksums': ['b367e6fa6caac1c9f500adc79ada1b5b1242c50d5f716a1a4362030197847d30'], - }), -] - -moduleclass = 'tools' diff --git a/263_DeepLoc/gperftools-2.14-GCCcore-12.2.0.eb b/263_DeepLoc/gperftools-2.14-GCCcore-12.2.0.eb deleted file mode 100644 index 3b659f0b..00000000 --- a/263_DeepLoc/gperftools-2.14-GCCcore-12.2.0.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'gperftools' -version = '2.14' - -homepage = 'https://github.com/gperftools/gperftools' -description = """ -gperftools is a collection of a high-performance multi-threaded malloc() -implementation, plus some pretty nifty performance analysis tools. -Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. -""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -github_account = 'gperftools' -source_urls = [GITHUB_SOURCE] -sources = [SOURCE_TAR_GZ] -checksums = ['ab456a74af2f57a3ee6c20462f73022d11f7ffc22e470fc06dec39692c0ee5f3'] - -builddependencies = [ - ('Autotools', '20220317'), - ('binutils', '2.39'), -] - -dependencies = [ - ('libunwind', '1.6.2'), -] - -preconfigopts = "autoreconf -f -i && " -configopts = '--enable-libunwind' - -sanity_check_paths = { - 'files': ['bin/pprof', 'lib/libprofiler.a', 'lib/libprofiler.%s' % SHLIB_EXT, - 'lib/libtcmalloc.a', 'lib/libtcmalloc.%s' % SHLIB_EXT], - 'dirs': ['include'], -} - -moduleclass = 'tools' diff --git a/263_DeepLoc/maturin-1.4.0-GCCcore-12.2.0-Rust-1.75.0.eb b/263_DeepLoc/maturin-1.4.0-GCCcore-12.2.0-Rust-1.75.0.eb deleted file mode 100644 index 7318a0d0..00000000 --- a/263_DeepLoc/maturin-1.4.0-GCCcore-12.2.0-Rust-1.75.0.eb +++ /dev/null @@ -1,647 +0,0 @@ -easyblock = 'CargoPythonPackage' - -name = 'maturin' -version = '1.4.0' -_rust_ver = '1.75.0' -versionsuffix = '-Rust-%s' % _rust_ver - -homepage = "https://github.com/pyo3/maturin" -description = """This project is meant as a zero configuration -replacement for setuptools-rust and milksnake. It supports building -wheels for python 3.5+ on windows, linux, mac and freebsd, can upload -them to pypi and has basic pypy and graalpy support.""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -builddependencies = [('binutils', '2.39')] - -dependencies = [ - ('Python', '3.10.8'), - ('Rust', _rust_ver), -] - -crates = [ - ('adler', '1.0.2'), - ('ahash', '0.8.6'), - ('aho-corasick', '1.1.2'), - ('allocator-api2', '0.2.16'), - ('anstream', '0.3.2'), - ('anstream', '0.6.4'), - ('anstyle', '1.0.2'), - ('anstyle-parse', '0.2.1'), - ('anstyle-query', '1.0.0'), - ('anstyle-wincon', '1.0.2'), - ('anstyle-wincon', '3.0.1'), - ('anyhow', '1.0.75'), - ('autocfg', '1.1.0'), - ('base64', '0.13.1'), - ('base64', '0.21.5'), - ('bitflags', '1.3.2'), - ('bitflags', '2.4.1'), - ('block-buffer', '0.10.4'), - ('bstr', '1.8.0'), - ('byteorder', '1.5.0'), - ('bytes', '1.5.0'), - ('bytesize', '1.3.0'), - ('bzip2', '0.4.4'), - ('bzip2-sys', '0.1.11+1.0.8'), - ('cab', '0.4.1'), - ('camino', '1.1.6'), - ('cargo-config2', '0.1.16'), - ('cargo-options', '0.7.2'), - ('cargo-platform', '0.1.5'), - ('cargo-xwin', '0.16.2'), - ('cargo-zigbuild', '0.18.0'), - ('cargo_metadata', '0.18.1'), - ('cbindgen', '0.26.0'), - ('cc', '1.0.83'), - ('cfb', '0.9.0'), - ('cfg-if', '1.0.0'), - ('charset', '0.1.3'), - ('chumsky', '0.9.3'), - ('clap', '4.3.24'), - ('clap_builder', '4.3.24'), - ('clap_complete', '4.3.2'), - ('clap_complete_command', '0.5.1'), - ('clap_complete_fig', '4.3.1'), - ('clap_complete_nushell', '0.1.11'), - ('clap_derive', '4.3.12'), - ('clap_lex', '0.5.0'), - ('cli-table', '0.4.7'), - ('colorchoice', '1.0.0'), - ('configparser', '3.0.3'), - ('console', '0.15.7'), - ('content_inspector', '0.2.4'), - ('core-foundation', '0.9.3'), - ('core-foundation-sys', '0.8.4'), - ('cpufeatures', '0.2.11'), - ('crc32fast', '1.3.2'), - ('crossbeam-channel', '0.5.8'), - ('crossbeam-deque', '0.8.3'), - ('crossbeam-epoch', '0.9.15'), - ('crossbeam-utils', '0.8.16'), - ('crypto-common', '0.1.6'), - ('data-encoding', '2.5.0'), - ('deranged', '0.3.9'), - ('dialoguer', '0.11.0'), - ('diff', '0.1.13'), - ('digest', '0.10.7'), - ('dirs', '5.0.1'), - ('dirs-sys', '0.4.1'), - ('dissimilar', '1.0.7'), - ('dunce', '1.0.4'), - ('either', '1.9.0'), - ('encode_unicode', '0.3.6'), - ('encoding_rs', '0.8.33'), - ('equivalent', '1.0.1'), - ('errno', '0.3.8'), - ('expect-test', '1.4.1'), - ('fastrand', '2.0.1'), - ('fat-macho', '0.4.7'), - ('filetime', '0.2.22'), - ('flate2', '1.0.28'), - ('fnv', '1.0.7'), - ('foreign-types', '0.3.2'), - ('foreign-types-shared', '0.1.1'), - ('form_urlencoded', '1.2.1'), - ('fs-err', '2.11.0'), - ('generic-array', '0.14.7'), - ('getrandom', '0.2.11'), - ('glob', '0.3.1'), - ('globset', '0.4.14'), - ('goblin', '0.7.1'), - ('hashbrown', '0.12.3'), - ('hashbrown', '0.14.3'), - ('heck', '0.4.1'), - ('hermit-abi', '0.3.3'), - ('home', '0.5.5'), - ('humantime', '2.1.0'), - ('humantime-serde', '1.1.1'), - ('idna', '0.5.0'), - ('ignore', '0.4.20'), - ('indexmap', '1.9.3'), - ('indexmap', '2.1.0'), - ('indicatif', '0.17.7'), - ('indoc', '2.0.4'), - ('instant', '0.1.12'), - ('io-lifetimes', '1.0.11'), - ('is-terminal', '0.4.9'), - ('itertools', '0.11.0'), - ('itertools', '0.12.0'), - ('itoa', '1.0.9'), - ('keyring', '2.0.5'), - ('lazy_static', '1.4.0'), - ('lddtree', '0.3.3'), - ('libc', '0.2.150'), - ('libredox', '0.0.1'), - ('linux-keyutils', '0.2.3'), - ('linux-raw-sys', '0.3.8'), - ('linux-raw-sys', '0.4.11'), - ('lock_api', '0.4.11'), - ('log', '0.4.20'), - ('lzxd', '0.1.4'), - ('mailparse', '0.14.0'), - ('matchers', '0.1.0'), - ('memchr', '2.6.4'), - ('memoffset', '0.9.0'), - ('mime', '0.3.17'), - ('mime_guess', '2.0.4'), - ('minijinja', '1.0.10'), - ('minimal-lexical', '0.2.1'), - ('miniz_oxide', '0.7.1'), - ('msi', '0.7.0'), - ('multipart', '0.18.0'), - ('native-tls', '0.2.11'), - ('nom', '7.1.3'), - ('normalize-line-endings', '0.3.0'), - ('normpath', '1.1.1'), - ('nu-ansi-term', '0.46.0'), - ('number_prefix', '0.4.0'), - ('once_cell', '1.18.0'), - ('openssl', '0.10.60'), - 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-name = 'mygene' -version = '3.2.2' - -homepage = 'https://github.com/biothings/mygene.py' -description = "Python Client for MyGene.Info services." - -toolchain = {'name': 'foss', 'version': '2022b'} - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), -] - -use_pip = True - -exts_list = [ - ('biothings_client', '0.3.1', { - 'checksums': ['c972bf2e02b6f9cc78f7f2fbc5ef02cc56fe4f8a2adcb8801ec902f4ab7011e6'], - }), - (name, version, { - 'checksums': ['e729cabbc28cf5afb221bca1ab637883b375cb1a3e2f067587ec79f71affdaea'], - }), -] - -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/263_DeepLoc/pydantic-2.5.3-GCCcore-12.2.0.eb b/263_DeepLoc/pydantic-2.5.3-GCCcore-12.2.0.eb deleted file mode 100644 index da3ebeae..00000000 --- a/263_DeepLoc/pydantic-2.5.3-GCCcore-12.2.0.eb +++ /dev/null @@ -1,121 +0,0 @@ -easyblock = 'CargoPythonBundle' - -name = 'pydantic' -version = '2.5.3' - -homepage = 'https://github.com/samuelcolvin/pydantic' -description = """Data validation and settings management using Python type hinting.""" - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -builddependencies = [ - ('binutils', '2.39'), - ('Rust', '1.75.0'), - ('maturin', '1.4.0', '-Rust-1.75.0'), -] - -dependencies = [ - ('Python', '3.10.8'), - ('typing-extensions', '4.9.0'), -] - -use_pip = True -sanity_pip_check = True - -crates = [ - ('ahash', '0.8.6'), - ('aho-corasick', '1.0.2'), - ('autocfg', '1.1.0'), - ('base64', '0.21.5'), - ('bitflags', '1.3.2'), - ('cc', '1.0.79'), - ('cfg-if', '1.0.0'), - ('enum_dispatch', '0.3.12'), - ('equivalent', '1.0.1'), - ('form_urlencoded', '1.2.0'), - ('getrandom', '0.2.10'), - ('hashbrown', '0.14.0'), - ('heck', '0.4.1'), - ('idna', '0.4.0'), - ('indexmap', '2.0.0'), - ('indoc', '2.0.4'), - ('itoa', '1.0.8'), - ('jiter', '0.0.4'), - ('lexical-core', '0.8.5'), - ('lexical-parse-float', '0.8.5'), - ('lexical-parse-integer', '0.8.6'), - ('lexical-util', '0.8.5'), - ('lexical-write-float', '0.8.5'), - ('lexical-write-integer', '0.8.5'), - ('libc', '0.2.147'), - ('lock_api', '0.4.10'), - ('memchr', '2.6.3'), - ('memoffset', '0.9.0'), - ('num-bigint', '0.4.4'), - ('num-integer', '0.1.45'), - ('num-traits', '0.2.16'), - ('once_cell', '1.18.0'), - ('parking_lot', '0.12.1'), - ('parking_lot_core', '0.9.8'), - ('percent-encoding', '2.3.0'), - ('proc-macro2', '1.0.69'), - ('pyo3', '0.20.0'), - ('pyo3-build-config', '0.20.0'), - ('pyo3-ffi', '0.20.0'), - ('pyo3-macros', '0.20.0'), - ('pyo3-macros-backend', '0.20.0'), - ('python3-dll-a', '0.2.9'), - ('quote', '1.0.29'), - ('redox_syscall', '0.3.5'), - ('regex', '1.10.2'), - ('regex-automata', '0.4.3'), - ('regex-syntax', '0.8.2'), - ('rustversion', '1.0.13'), - ('ryu', '1.0.14'), - ('scopeguard', '1.1.0'), - ('serde', '1.0.190'), - ('serde_derive', '1.0.190'), - ('serde_json', '1.0.108'), - ('smallvec', '1.11.1'), - ('speedate', '0.13.0'), - ('static_assertions', '1.1.0'), - ('strum', '0.25.0'), - ('strum_macros', '0.25.3'), - ('syn', '2.0.38'), - ('target-lexicon', '0.12.9'), - ('tinyvec', '1.6.0'), - ('tinyvec_macros', '0.1.1'), - ('unicode-bidi', '0.3.13'), - ('unicode-ident', '1.0.10'), - ('unicode-normalization', '0.1.22'), - ('unindent', '0.2.3'), - ('url', '2.4.1'), - ('uuid', '1.5.0'), - ('version_check', '0.9.4'), - ('wasi', '0.11.0+wasi-snapshot-preview1'), - ('windows-targets', '0.48.1'), - ('windows_aarch64_gnullvm', '0.48.0'), - ('windows_aarch64_msvc', '0.48.0'), - ('windows_i686_gnu', '0.48.0'), - ('windows_i686_msvc', '0.48.0'), - ('windows_x86_64_gnu', '0.48.0'), - ('windows_x86_64_gnullvm', '0.48.0'), - ('windows_x86_64_msvc', '0.48.0'), - ('zerocopy', '0.7.20'), - ('zerocopy-derive', '0.7.20'), -] - -exts_list = [ - ('annotated_types', '0.6.0', { - 'checksums': ['563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d'], - }), - ('pydantic_core', '2.14.6', { - 'checksums': ['1fd0c1d395372843fba13a51c28e3bb9d59bd7aebfeb17358ffaaa1e4dbbe948'], - }), - (name, version, { - 'preinstallopts': "sed -i '/Framework :: Pydantic/d' pyproject.toml && ", - 'checksums': ['b3ef57c62535b0941697cce638c08900d87fcb67e29cfa99e8a68f747f393f7a'], - }), -] - -moduleclass = 'devel' diff --git a/263_DeepLoc/tensorboardX-2.6.2.2-foss-2022b.eb b/263_DeepLoc/tensorboardX-2.6.2.2-foss-2022b.eb deleted file mode 100644 index 20913998..00000000 --- a/263_DeepLoc/tensorboardX-2.6.2.2-foss-2022b.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'tensorboardX' -version = '2.6.2.2' - -homepage = 'https://github.com/lanpa/tensorboardX' -description = "Tensorboard for PyTorch." - -toolchain = {'name': 'foss', 'version': '2022b'} - -# tensorboardX v2.x works with tensorboards generated with TensorFlow 2, -# but TensorFlow is not needed to use tensorboardX -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('protobuf-python', '4.23.0'), -] - -use_pip = True - -exts_list = [ - (name, version, { - 'modulename': '%(name)s', - 'checksums': ['c6476d7cd0d529b0b72f4acadb1269f9ed8b22f441e87a84f2a3b940bb87b666'], - }), -] - -sanity_pip_check = True - -moduleclass = 'vis' diff --git a/263_DeepLoc/typing-extensions-4.9.0-GCCcore-12.2.0.eb b/263_DeepLoc/typing-extensions-4.9.0-GCCcore-12.2.0.eb deleted file mode 100644 index 6d941d6f..00000000 --- a/263_DeepLoc/typing-extensions-4.9.0-GCCcore-12.2.0.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'typing-extensions' -version = '4.9.0' - -homepage = 'https://github.com/python/typing/blob/master/typing_extensions/README.rst' -description = 'Typing Extensions – Backported and Experimental Type Hints for Python' - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -sources = ['typing_extensions-%(version)s.tar.gz'] -checksums = ['23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783'] - -builddependencies = [('binutils', '2.39')] - -dependencies = [('Python', '3.10.8')] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - -moduleclass = 'devel' diff --git a/280_anvio/ETE-3.1.3-foss-2022b.eb b/280_anvio/ETE-3.1.3-foss-2022b.eb deleted file mode 100644 index 1a1837b7..00000000 --- a/280_anvio/ETE-3.1.3-foss-2022b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'ETE' -version = '3.1.3' - -homepage = 'http://etetoolkit.org' -description = """A Python framework for the analysis and visualization of trees""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -source_urls = ['https://pypi.python.org/packages/source/e/ete3'] -sources = ['ete3-%(version)s.tar.gz'] -patches = ['ETE-3.1.2-foss-2021b_fix_binpath.patch'] -checksums = [ - {'ete3-3.1.3.tar.gz': '06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2'}, - {'ETE-3.1.2-foss-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'}, -] - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('lxml', '4.9.2'), - ('PyQt5', '5.15.7'), -] - -download_dep_fail = True -use_pip = True - -options = {'modulename': 'ete3'} - -sanity_check_paths = { - 'files': ['bin/ete3'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_pip_check = True - -moduleclass = 'vis' diff --git a/280_anvio/ETE-3.1.3-foss-2023a.eb b/280_anvio/ETE-3.1.3-foss-2023a.eb deleted file mode 100644 index be10b633..00000000 --- a/280_anvio/ETE-3.1.3-foss-2023a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'ETE' -version = '3.1.3' - -homepage = 'http://etetoolkit.org' -description = """A Python framework for the analysis and visualization of trees""" - -toolchain = {'name': 'foss', 'version': '2023a'} - -source_urls = ['https://pypi.python.org/packages/source/e/ete3'] -sources = ['ete3-%(version)s.tar.gz'] -patches = ['ETE-3.1.2-foss-2021b_fix_binpath.patch'] -checksums = [ - {'ete3-3.1.3.tar.gz': '06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2'}, - {'ETE-3.1.2-foss-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'}, -] - -dependencies = [ - ('Python', '3.11.3'), - ('SciPy-bundle', '2023.07'), - ('lxml', '4.9.2'), - ('PyQt5', '5.15.10'), -] - -download_dep_fail = True -use_pip = True - -options = {'modulename': 'ete3'} - -sanity_check_paths = { - 'files': ['bin/ete3'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_pip_check = True - -moduleclass = 'vis' diff --git a/280_anvio/Levenshtein-0.22.0-GCCcore-12.3.0.eb b/280_anvio/Levenshtein-0.22.0-GCCcore-12.3.0.eb deleted file mode 100644 index 864ffcc0..00000000 --- a/280_anvio/Levenshtein-0.22.0-GCCcore-12.3.0.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'Levenshtein' -version = '0.22.0' - -homepage = 'https://pypi.org/project/python-Levenshtein/' -description = 'Python extension for computing string edit distances and similarities.' - -toolchain = {'name': 'GCCcore', 'version': '12.3.0'} - -builddependencies = [ - ('binutils', '2.40'), - ('scikit-build', '0.17.6'), - ('CMake', '3.26.3'), -] - -dependencies = [ - ('Python', '3.11.3'), - ('Python-bundle-PyPI', '2023.06'), -] - -use_pip = True - -exts_list = [ - (name, version, { - 'modulename': 'Levenshtein', - 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], - }), -] - -sanity_pip_check = True - -moduleclass = 'data' diff --git a/280_anvio/Levenshtein-0.24.0-GCCcore-12.2.0.eb b/280_anvio/Levenshtein-0.24.0-GCCcore-12.2.0.eb deleted file mode 100644 index fffd5d36..00000000 --- a/280_anvio/Levenshtein-0.24.0-GCCcore-12.2.0.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'Levenshtein' -version = '0.24.0' - -homepage = 'https://pypi.org/project/python-Levenshtein/' -description = 'Python extension for computing string edit distances and similarities.' - -toolchain = {'name': 'GCCcore', 'version': '12.2.0'} - -builddependencies = [ - ('binutils', '2.39'), - ('scikit-build', '0.17.2'), - ('CMake', '3.24.3'), -] - -dependencies = [ - ('Python', '3.10.8'), -] - -use_pip = True - -exts_list = [ - ('rapidfuzz', '3.6.1', { - 'checksums': ['35660bee3ce1204872574fa041c7ad7ec5175b3053a4cb6e181463fc07013de7'], - }), - (name, version, { - 'modulename': 'Levenshtein', - 'checksums': ['0cbcf3c9a7c77de3a405bfc857ab94341b4049e8c5c6b917f5ffcd5a92ff169a'], - }), -] - -sanity_pip_check = True - -moduleclass = 'data' diff --git a/280_anvio/Pysam-0.22.0-GCC-12.3.0.eb b/280_anvio/Pysam-0.22.0-GCC-12.3.0.eb deleted file mode 100755 index 684f6806..00000000 --- a/280_anvio/Pysam-0.22.0-GCC-12.3.0.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Pysam' -version = '0.22.0' - -homepage = 'https://github.com/pysam-developers/pysam' -description = """Pysam is a python module for reading and manipulating Samfiles. - It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" - -toolchain = {'name': 'GCC', 'version': '12.3.0'} - -source_urls = ['https://github.com/pysam-developers/pysam/archive/'] -sources = ['v%(version)s.tar.gz'] -checksums = ['61b3377c5f889ddc6f6979912c3bb960d7e08407dada9cb38f13955564ea036f'] - -dependencies = [ - ('Python', '3.11.3'), - ('Python-bundle-PyPI', '2023.06'), - ('ncurses', '6.4'), - ('cURL', '8.0.1'), - ('XZ', '5.4.2'), -] - -download_dep_fail = True -use_pip = True - -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/280_anvio/Seaborn-0.13.2-gfbf-2023a.eb b/280_anvio/Seaborn-0.13.2-gfbf-2023a.eb deleted file mode 100644 index 3168e1c3..00000000 --- a/280_anvio/Seaborn-0.13.2-gfbf-2023a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Seaborn' -version = '0.13.2' - -homepage = 'https://seaborn.pydata.org/' -description = """ Seaborn is a Python visualization library based on matplotlib. - It provides a high-level interface for drawing attractive statistical graphics. """ - -toolchain = {'name': 'gfbf', 'version': '2023a'} - -sources = [SOURCELOWER_TAR_GZ] -checksums = ['93e60a40988f4d65e9f4885df477e2fdaff6b73a9ded434c1ab356dd57eefff7'] - -dependencies = [ - ('Python', '3.11.3'), - ('matplotlib', '3.7.2'), -] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/280_anvio/anvio-8-foss-2022b.eb b/280_anvio/anvio-8-foss-2022b.eb deleted file mode 100644 index c13c2a6a..00000000 --- a/280_anvio/anvio-8-foss-2022b.eb +++ /dev/null @@ -1,111 +0,0 @@ -# Author: Pavel Grochal (INUITS) -# License: GPLv2 - -easyblock = 'PythonBundle' - -name = 'anvio' -version = '8' - -homepage = 'https://merenlab.org/software/anvio/' -description = """An analysis and visualization platform for 'omics data.""" - -toolchain = {'name': 'foss', 'version': '2022b'} - -github_account = 'merenlab' - -dependencies = [ - ('Python', '3.10.8'), - ('SciPy-bundle', '2023.02'), - ('Pysam', '0.21.0'), - ('matplotlib', '3.7.0'), - ('scikit-learn', '1.2.1'), - ('prodigal', '2.6.3'), - ('Biopython', '1.81'), - ('h5py', '3.8.0'), - ('HMMER', '3.3.2'), - ('networkx', '3.0'), - ('numba', '0.58.1'), - ('statsmodels', '0.14.0'), - ('snakemake', '7.32.3'), - ('ETE', '3.1.3'), - ('dill', '0.3.7'), - ('Seaborn', '0.12.2'), - ('Levenshtein', '0.24.0'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('bottle', '0.12.25', { - 'checksums': ['e1a9c94970ae6d710b3fb4526294dfeb86f2cb4a81eff3a4b98dc40fb0e5e021'], - }), - ('colored', '2.2.4', { - 'checksums': ['595e1dd7f3b472ea5f12af21d2fec8a2ea2cf8f9d93e67180197330b26df9b61'], - }), - ('asgiref', '3.7.2', { - 'checksums': ['9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed'], - }), - ('sqlparse', '0.4.4', { - 'checksums': ['d446183e84b8349fa3061f0fe7f06ca94ba65b426946ffebe6e3e8295332420c'], - }), - ('Django', '5.0.1', { - 'checksums': ['8c8659665bc6e3a44fefe1ab0a291e5a3fb3979f9a8230be29de975e57e8f854'], - }), - ('illumina-utils', '2.13', { - 'checksums': ['e688ca221ea6178614073b72205fce7b4a54695237c7aa96713492ecd99bd56e'], - # python-Levenshtein was renamed to Levenshtein - 'preinstallopts': "sed -i 's/python-Levenshtein/Levenshtein/g' requirements.txt && ", - 'modulename': 'IlluminaUtils', - }), - ('mistune', '3.0.2', { - 'checksums': ['fc7f93ded930c92394ef2cb6f04a8aabab4117a91449e72dcc8dfa646a508be8'], - }), - ('multiprocess', '0.70.15', { - 'checksums': ['f20eed3036c0ef477b07a4177cf7c1ba520d9a2677870a4f47fe026f0cd6787e'], - }), - ('Paste', '3.7.1', { - 'checksums': ['6d07a8e1c7fa72b8cf403762a002f80d12c0384056956dd0a87cb9a3be64749a'], - }), - ('plotext', '5.2.8', { - 'checksums': ['319a287baabeb8576a711995f973a2eba631c887aa6b0f33ab016f12c50ffebe'], - }), - ('pyani', '0.2.12', { - 'checksums': ['4f56b217656f53416b333b69495a4ba8cde782e64e475e1481cb2213ce6b9388'], - }), - ('rich_argparse', '1.4.0', { - 'checksums': ['c275f34ea3afe36aec6342c2a2298893104b5650528941fb53c21067276dba19'], - }), - (name, version, { - 'source_urls': ['https://github.com/merenlab/anvio/releases/download/v%(version)s/'], - 'patches': ['anvio-8_fix-rU.patch'], - 'checksums': [ - {'anvio-8.tar.gz': '13da84d48d7266a8986815efb024772fa26ad1c8a951d42897c3a51e3d924feb'}, - {'anvio-8_fix-rU.patch': '5eafa5962f59b563cfc3913fb688963b5fe052714c7d7c66b013af065e7a2fea'}, - ], - # remove too strict requirements for Python packages anvio depends on - 'preinstallopts': "sed -i -e 's/==.*//g' -e 's/<=.*//g' requirements.txt && ", - }), -] - -local_binaries_list = [ - 'anvi-pan-genome', - 'anvi-script-reformat-fasta', - 'anvi-profile', - 'anvi-help', -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in local_binaries_list], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [ - "anvi-self-test --suite mini --no-interactive", - "anvi-pan-genome --help", - "anvi-script-reformat-fasta --help", - "anvi-profile --version", - "anvi-help --help", -] - -moduleclass = 'bio' diff --git a/280_anvio/anvio-8_fix-rU.patch b/280_anvio/anvio-8_fix-rU.patch deleted file mode 100644 index e34f180b..00000000 --- a/280_anvio/anvio-8_fix-rU.patch +++ /dev/null @@ -1,484 +0,0 @@ -fix for: ValueError: invalid mode: 'rU' -see also https://github.com/merenlab/anvio/commit/a974118fc6f1b53c846892fc6dee0a86e6658963 -and https://github.com/merenlab/anvio/commit/ac5908eac71809b31f3bd0ff92bbb573cc17f730 - -From a974118fc6f1b53c846892fc6dee0a86e6658963 Mon Sep 17 00:00:00 2001 -From: "A. Murat Eren" -Date: Wed, 25 Oct 2023 16:09:42 +0200 -Subject: [PATCH] rU -> r. - -we will see tonight if things explode and we will blame meren for that. ---- - anvio/cogs.py | 6 +++--- - anvio/dbops.py | 4 ++-- - anvio/drivers/emapper.py | 2 +- - anvio/fastalib.py | 2 +- - anvio/filesnpaths.py | 8 ++++---- - anvio/interactive.py | 2 +- - anvio/kegg.py | 14 +++++++------- - anvio/mcgclassifier.py | 4 ++-- - anvio/merger.py | 2 +- - anvio/panops.py | 2 +- - anvio/parsers/kaiju.py | 2 +- - anvio/profiler.py | 2 +- - anvio/programs.py | 2 +- - anvio/samplesops.py | 4 ++-- - anvio/structureops.py | 2 +- - anvio/variabilityops.py | 2 +- - anvio/workflows/__init__.py | 2 +- - bin/anvi-export-structures | 2 +- - bin/anvi-get-sequences-for-hmm-hits | 2 +- - 19 files changed, 33 insertions(+), 33 deletions(-) - -diff --git a/anvio/cogs.py b/anvio/cogs.py -index c14041a710..1700af254d 100644 ---- a/anvio/cogs.py -+++ b/anvio/cogs.py -@@ -702,7 +702,7 @@ def raise_error(line_num, line_content, fields, e): - p_id_without_cog_id = set([]) - - line_counter = 0 -- for line in open(input_file_path, 'rU').readlines(): -+ for line in open(input_file_path, 'r').readlines(): - line_counter += 1 - - if line_counter % 500 == 0: -@@ -823,7 +823,7 @@ def format_categories(self, input_file_path, output_file_path): - progress.update('...') - - output = open(output_file_path, 'w') -- for line in open(input_file_path, 'rU').readlines(): -+ for line in open(input_file_path, 'r').readlines(): - if line.startswith('#'): - continue - -@@ -951,7 +951,7 @@ def check_raw_data_hash_and_existence(self, input_file_path, output_file_path): - - # Get a dictionnary of checksums, the file is formatted as "checksum filename" per line - checksums = {} -- for line in open(input_file_path, 'rU').readlines(): -+ for line in open(input_file_path, 'r').readlines(): - stripped = line.strip('\n').split(' ') - file_name = stripped[-1].strip('*') - checksums[file_name] = stripped[0] -diff --git a/anvio/dbops.py b/anvio/dbops.py -index 34e3198a8a..ce700b784d 100644 ---- a/anvio/dbops.py -+++ b/anvio/dbops.py -@@ -4335,7 +4335,7 @@ def create(self, args): - - if description_file_path: - filesnpaths.is_file_plain_text(description_file_path) -- description = open(os.path.abspath(description_file_path), 'rU').read() -+ description = open(os.path.abspath(description_file_path), 'r').read() - else: - description = '' - -@@ -4957,7 +4957,7 @@ def get_description_in_db(anvio_db_path, run=run): - - def update_description_in_db_from_file(anvio_db_path, description_file_path, run=run): - filesnpaths.is_file_plain_text(description_file_path) -- description = open(os.path.abspath(description_file_path), 'rU').read() -+ description = open(os.path.abspath(description_file_path), 'r').read() - - update_description_in_db(anvio_db_path, description, run=run) - -diff --git a/anvio/drivers/emapper.py b/anvio/drivers/emapper.py -index 7ea2d8fa53..dd94e9baa8 100644 ---- a/anvio/drivers/emapper.py -+++ b/anvio/drivers/emapper.py -@@ -357,7 +357,7 @@ def populate_annotations_dict(self, annotations_file_path): - - num_entries_processed = 0 - self.progress.new('Parsing the annotations file') -- for line in open(annotations_file_path, 'rU').readlines(): -+ for line in open(annotations_file_path, 'r').readlines(): - if line.startswith('#') or line == '\n': - continue - -diff --git a/anvio/fastalib.py b/anvio/fastalib.py -index 2da45c16f0..0980098ae7 100644 ---- a/anvio/fastalib.py -+++ b/anvio/fastalib.py -@@ -97,7 +97,7 @@ def __init__(self, fasta_file_path, lazy_init=True, unique=False, allow_mixed_ca - if self.compressed: - self.file_pointer = gzip.open(self.fasta_file_path, mode="rt") - else: -- self.file_pointer = io.open(self.fasta_file_path, 'rU', newline='') -+ self.file_pointer = io.open(self.fasta_file_path, 'r', newline='') - - if not self.file_pointer.read(1) == '>': - self.file_pointer.close() -diff --git a/anvio/filesnpaths.py b/anvio/filesnpaths.py -index 93327207de..a9d7939cbc 100644 ---- a/anvio/filesnpaths.py -+++ b/anvio/filesnpaths.py -@@ -73,7 +73,7 @@ def is_proper_external_gene_calls_file(file_path): - headers_proper = ['gene_callers_id', 'contig', 'start', 'stop', 'direction', 'partial', 'call_type', 'source', 'version', 'aa_sequence'] - call_types_allowed = set(list(constants.gene_call_types.values())) - -- with open(file_path, 'rU') as input_file: -+ with open(file_path, 'r') as input_file: - headers = input_file.readline().strip().split('\t') - - if len(headers) == 10: -@@ -196,7 +196,7 @@ def is_file_empty(file_path): - - def is_file_tab_delimited(file_path, separator='\t', expected_number_of_fields=None, dont_raise=False): - is_file_exists(file_path) -- f = open(file_path, 'rU') -+ f = open(file_path, 'r') - - try: - while True: -@@ -246,7 +246,7 @@ def is_file_json_formatted(file_path): - is_file_exists(file_path) - - try: -- json.load(open(file_path, 'rU')) -+ json.load(open(file_path, 'r')) - except ValueError as e: - raise FilesNPathsError("File '%s' does not seem to be a properly formatted JSON " - "file ('%s', cries the library)." % (file_path, e)) -@@ -272,7 +272,7 @@ def is_file_plain_text(file_path, dont_raise=False): - is_file_exists(file_path) - - try: -- open(os.path.abspath(file_path), 'rU').read(512) -+ open(os.path.abspath(file_path), 'r').read(512) - except IsADirectoryError: - if dont_raise: - return False -diff --git a/anvio/interactive.py b/anvio/interactive.py -index f397c0e56d..1564353064 100644 ---- a/anvio/interactive.py -+++ b/anvio/interactive.py -@@ -546,7 +546,7 @@ def process_external_item_order(self): - - filesnpaths.is_file_exists(self.item_order_path) - -- item_order = [l.strip() for l in open(self.item_order_path, 'rU').readlines()] -+ item_order = [l.strip() for l in open(self.item_order_path, 'r').readlines()] - self.run.info('Items order', 'An items order with %d items is found at %s.' % (len(item_order), self.item_order_path), mc='cyan') - - self.progress.new('External items order') -diff --git a/anvio/kegg.py b/anvio/kegg.py -index 13fbaf57b1..4f25761453 100644 ---- a/anvio/kegg.py -+++ b/anvio/kegg.py -@@ -924,7 +924,7 @@ def process_pathway_file(self): - filesnpaths.is_file_exists(self.kegg_pathway_file) - filesnpaths.is_file_plain_text(self.kegg_pathway_file) - -- f = open(self.kegg_pathway_file, 'rU') -+ f = open(self.kegg_pathway_file, 'r') - self.progress.new("Parsing KEGG Pathway file") - - current_category = None -@@ -998,7 +998,7 @@ def get_accessions_from_htext_file(self, htext_file): - filesnpaths.is_file_exists(htext_file) - filesnpaths.is_file_plain_text(htext_file) - -- f = open(htext_file, 'rU') -+ f = open(htext_file, 'r') - self.progress.new(f"Parsing KEGG htext file: {htext_file}") - - target_level = None -@@ -1077,7 +1077,7 @@ def download_generic_flat_file(self, accession, download_dir="./"): - utils.download_file(self.kegg_rest_api_get + '/' + accession, - file_path, progress=self.progress, run=self.run) - # verify entire file has been downloaded -- f = open(file_path, 'rU') -+ f = open(file_path, 'r') - f.seek(0, os.SEEK_END) - f.seek(f.tell() - 4, os.SEEK_SET) - last_line = f.readline().strip('\n') -@@ -1146,7 +1146,7 @@ def download_pathways(self): - utils.download_file(self.kegg_rest_api_get + '/' + konum, - file_path, progress=self.progress, run=self.run) - # verify entire file has been downloaded -- f = open(file_path, 'rU') -+ f = open(file_path, 'r') - f.seek(0, os.SEEK_END) - f.seek(f.tell() - 4, os.SEEK_SET) - last_line = f.readline().strip('\n') -@@ -1528,7 +1528,7 @@ def process_module_file(self): - filesnpaths.is_file_exists(self.kegg_module_file) - filesnpaths.is_file_plain_text(self.kegg_module_file) - -- f = open(self.kegg_module_file, 'rU') -+ f = open(self.kegg_module_file, 'r') - self.progress.new("Parsing KEGG Module file") - - current_module_type = None -@@ -1641,7 +1641,7 @@ def confirm_downloaded_modules(self): - f"on your computer. Very sorry to tell you this, but you need to re-download the KEGG " - f"data. We recommend the --reset flag.") - # verify entire file has been downloaded -- f = open(file_path, 'rU') -+ f = open(file_path, 'r') - f.seek(0, os.SEEK_END) - f.seek(f.tell() - 4, os.SEEK_SET) - last_line = f.readline().strip('\n') -@@ -6677,7 +6677,7 @@ def create(self): - for mnum in self.module_dict.keys(): - self.progress.update("Parsing Module %s" % mnum) - mod_file_path = os.path.join(self.module_data_directory, mnum) -- f = open(mod_file_path, 'rU') -+ f = open(mod_file_path, 'r') - - prev_data_name_field = None - module_has_annotation_source = False -diff --git a/anvio/mcgclassifier.py b/anvio/mcgclassifier.py -index 2d9f0b0bb3..bd38770778 100644 ---- a/anvio/mcgclassifier.py -+++ b/anvio/mcgclassifier.py -@@ -92,7 +92,7 @@ def __init__(self, args, run=run, progress=progress): - if self.exclude_samples: - # check that there is a file like this - filesnpaths.is_file_exists(self.exclude_samples) -- self.samples_to_exclude = set([l.split('\t')[0].strip() for l in open(self.exclude_samples, 'rU').readlines()]) -+ self.samples_to_exclude = set([l.split('\t')[0].strip() for l in open(self.exclude_samples, 'r').readlines()]) - - if not self.samples_to_exclude: - raise ConfigError("You asked to exclude samples, but provided an empty list.") -@@ -102,7 +102,7 @@ def __init__(self, args, run=run, progress=progress): - if self.include_samples: - # check that there is a file like this - filesnpaths.is_file_exists(self.include_samples) -- self.samples_to_include = set([l.split('\t')[0].strip() for l in open(self.include_samples, 'rU').readlines()]) -+ self.samples_to_include = set([l.split('\t')[0].strip() for l in open(self.include_samples, 'r').readlines()]) - - if not self.samples_to_include: - raise ConfigError("You provided an empty list of samples to include.") -diff --git a/anvio/merger.py b/anvio/merger.py -index 0e2aa44480..440f07a592 100644 ---- a/anvio/merger.py -+++ b/anvio/merger.py -@@ -334,7 +334,7 @@ def sanity_check(self): - # do we have a description file? - if self.description_file_path: - filesnpaths.is_file_plain_text(self.description_file_path) -- self.description = open(os.path.abspath(self.description_file_path), 'rU').read() -+ self.description = open(os.path.abspath(self.description_file_path), 'r').read() - - - def set_sample_id(self): -diff --git a/anvio/panops.py b/anvio/panops.py -index 5cf700d29a..824c2d5ac8 100644 ---- a/anvio/panops.py -+++ b/anvio/panops.py -@@ -234,7 +234,7 @@ def check_params(self): - - if self.description_file_path: - filesnpaths.is_file_plain_text(self.description_file_path) -- self.description = open(os.path.abspath(self.description_file_path), 'rU').read() -+ self.description = open(os.path.abspath(self.description_file_path), 'r').read() - - self.pan_db_path = self.get_output_file_path(self.project_name + '-PAN.db') - -diff --git a/anvio/parsers/kaiju.py b/anvio/parsers/kaiju.py -index 4d8f60e60b..057320a42a 100644 ---- a/anvio/parsers/kaiju.py -+++ b/anvio/parsers/kaiju.py -@@ -62,7 +62,7 @@ def fix_input_file(self, input_file_path): - - corrected_temp_file_path = filesnpaths.get_temp_file_path() - corrected_temp_file = open(corrected_temp_file_path, 'w') -- input_file = open(input_file_path, 'rU') -+ input_file = open(input_file_path, 'r') - - num_correct_lines = 0 - for line in input_file.readlines(): -diff --git a/anvio/profiler.py b/anvio/profiler.py -index 2a25ec3592..d2facf2a25 100644 ---- a/anvio/profiler.py -+++ b/anvio/profiler.py -@@ -450,7 +450,7 @@ def init_dirs_and_dbs(self): - - if self.description_file_path: - filesnpaths.is_file_plain_text(self.description_file_path) -- self.description = open(os.path.abspath(self.description_file_path), 'rU').read() -+ self.description = open(os.path.abspath(self.description_file_path), 'r').read() - - if self.output_directory: - self.output_directory = filesnpaths.check_output_directory(self.output_directory, ok_if_exists=self.overwrite_output_destinations) -diff --git a/anvio/programs.py b/anvio/programs.py -index b404d470a9..230f4c248d 100644 ---- a/anvio/programs.py -+++ b/anvio/programs.py -@@ -55,7 +55,7 @@ def get_until_blank(output): - - - def get_meta_information_from_file(file_path, meta_tag): -- all_lines = [l.strip() for l in open(file_path, 'rU').readlines()] -+ all_lines = [l.strip() for l in open(file_path, 'r').readlines()] - - meta_tag_content = '' - -diff --git a/anvio/samplesops.py b/anvio/samplesops.py -index f603df9779..814b0d96f4 100644 ---- a/anvio/samplesops.py -+++ b/anvio/samplesops.py -@@ -50,7 +50,7 @@ def process_samples_information_file(self, samples_information_path): - self.sample_names_in_samples_information_file = filesnpaths.is_proper_samples_information_file(samples_information_path) - - self.samples_information_dict, self.aliases_to_attributes_dict = self.convert_samples_information_dict(utils.get_TAB_delimited_file_as_dictionary(samples_information_path)) -- self.samples_information_default_layer_order = open(samples_information_path, 'rU').readline().strip().split('\t')[1:] -+ self.samples_information_default_layer_order = open(samples_information_path, 'r').readline().strip().split('\t')[1:] - - self.run.info('Samples information', 'Loaded for %d samples' % len(self.samples_information_dict), quiet=self.quiet) - -@@ -122,7 +122,7 @@ def process_single_order_data(self, single_order_path, single_order_name): - - filesnpaths.is_file_plain_text(single_order_path) - -- single_order_file_content = [l.strip('\n') for l in open(single_order_path, 'rU').readlines()] -+ single_order_file_content = [l.strip('\n') for l in open(single_order_path, 'r').readlines()] - - if len(single_order_file_content) != 1: - raise SamplesError("The single order file should contain a single line of information. It can't have nothing,\ -diff --git a/anvio/structureops.py b/anvio/structureops.py -index aa47125fe2..d9a41fcaca 100755 ---- a/anvio/structureops.py -+++ b/anvio/structureops.py -@@ -1968,7 +1968,7 @@ def get_path(self, gene_callers_id): - - def is_header_ok(self): - headers_proper = ['gene_callers_id', 'path'] -- with open(self.path, 'rU') as input_file: -+ with open(self.path, 'r') as input_file: - headers = input_file.readline().strip().split('\t') - missing_headers = [h for h in headers_proper if h not in headers] - -diff --git a/anvio/variabilityops.py b/anvio/variabilityops.py -index c116469a15..deb19b14e3 100644 ---- a/anvio/variabilityops.py -+++ b/anvio/variabilityops.py -@@ -764,7 +764,7 @@ def sanity_check(self): - filesnpaths.is_file_tab_delimited(self.genes_of_interest_path, expected_number_of_fields=1) - - try: -- self.gene_caller_ids = [int(g.strip()) for g in open(self.genes_of_interest_path, 'rU').readlines()] -+ self.gene_caller_ids = [int(g.strip()) for g in open(self.genes_of_interest_path, 'r').readlines()] - except: - raise ConfigError("The gene caller ids anvi'o found in that file does not seem like gene caller " - "ids anvi'o would use. There is something wrong here :(") -diff --git a/anvio/workflows/__init__.py b/anvio/workflows/__init__.py -index ffae6b78dd..828dab9af0 100644 ---- a/anvio/workflows/__init__.py -+++ b/anvio/workflows/__init__.py -@@ -333,7 +333,7 @@ def dry_run(self, workflow_graph_output_file_path_prefix='workflow'): - # we are (it still may be better to do it elsewhere more appropriate .. so - # we can look more decent or whatever): - if self.save_workflow_graph: -- lines = open(log_file_path, 'rU').readlines() -+ lines = open(log_file_path, 'r').readlines() - - try: - line_of_interest = [line_no for line_no in range(0, len(lines)) if lines[line_no].startswith('digraph')][0] -diff --git a/bin/anvi-export-structures b/bin/anvi-export-structures -index 147f82c346..0f059b74ed 100755 ---- a/bin/anvi-export-structures -+++ b/bin/anvi-export-structures -@@ -38,7 +38,7 @@ def main(args): - raise ConfigError("Pick one of --gene-caller-ids and --genes-of-interest") - elif genes_of_interest_path: - filesnpaths.is_file_exists(args.genes_of_interest) -- genes_of_interest = set(int(g.strip()) for g in open(args.genes_of_interest, 'rU').readlines()) -+ genes_of_interest = set(int(g.strip()) for g in open(args.genes_of_interest, 'r').readlines()) - elif gene_caller_ids: - genes_of_interest = set(int(g) for g in gene_caller_ids.split(',')) - else: -diff --git a/bin/anvi-get-sequences-for-hmm-hits b/bin/anvi-get-sequences-for-hmm-hits -index b18183737d..f2fec99652 100755 ---- a/bin/anvi-get-sequences-for-hmm-hits -+++ b/bin/anvi-get-sequences-for-hmm-hits -@@ -166,7 +166,7 @@ def main(args): - - # figure out gene names.. if the user provided a file, use that, otherwhise parse gene names out of the comma-separated text - if args.gene_names and filesnpaths.is_file_exists(args.gene_names, dont_raise=True): -- gene_names = [g.strip() for g in open(args.gene_names, 'rU').readlines()] if args.gene_names else [] -+ gene_names = [g.strip() for g in open(args.gene_names, 'r').readlines()] if args.gene_names else [] - else: - gene_names = [g.strip() for g in args.gene_names.split(',')] if args.gene_names else [] - -From ac5908eac71809b31f3bd0ff92bbb573cc17f730 Mon Sep 17 00:00:00 2001 -From: "A. Murat Eren" -Date: Wed, 25 Oct 2023 16:06:15 +0200 -Subject: [PATCH] rU is deprecated for a long time - ---- - anvio/utils.py | 16 ++++++++-------- - 1 file changed, 8 insertions(+), 8 deletions(-) - -diff --git a/anvio/utils.py b/anvio/utils.py -index 4e599aaa3..c52888934 100644 ---- a/anvio/utils.py -+++ b/anvio/utils.py -@@ -850,7 +850,7 @@ def transpose_tab_delimited_file(input_file_path, output_file_path, remove_after - filesnpaths.is_file_tab_delimited(input_file_path) - filesnpaths.is_output_file_writable(output_file_path) - -- file_content = [line.strip('\n').split('\t') for line in open(input_file_path, 'rU').readlines()] -+ file_content = [line.strip('\n').split('\t') for line in open(input_file_path, 'r').readlines()] - - output_file = open(output_file_path, 'w') - for entry in zip(*file_content): -@@ -1048,7 +1048,7 @@ def get_column_data_from_TAB_delim_file(input_file_path, column_indices=[], expe - for index in column_indices: - d[index] = [] - -- with open(input_file_path, "rU") as input_file: -+ with open(input_file_path, "r") as input_file: - for line in input_file.readlines(): - fields = line.strip('\n').split(separator) - -@@ -1066,9 +1066,9 @@ def get_columns_of_TAB_delim_file(file_path, include_first_column=False): - filesnpaths.is_file_exists(file_path) - - if include_first_column: -- return open(file_path, 'rU').readline().strip('\n').split('\t') -+ return open(file_path, 'r').readline().strip('\n').split('\t') - else: -- return open(file_path, 'rU').readline().strip('\n').split('\t')[1:] -+ return open(file_path, 'r').readline().strip('\n').split('\t')[1:] - - - def get_names_order_from_newick_tree(newick_tree, newick_format=1, reverse=False, names_with_only_digits_ok=False): -@@ -1095,7 +1095,7 @@ def get_vectors_from_TAB_delim_matrix(file_path, cols_to_return=None, rows_to_re - id_to_sample_dict = {} - sample_to_id_dict = {} - -- input_matrix = open(file_path, 'rU') -+ input_matrix = open(file_path, 'r') - columns = input_matrix.readline().strip('\n').split('\t')[1:] - - fields_of_interest = [] -@@ -1489,7 +1489,7 @@ def get_gene_caller_ids_from_args(gene_caller_ids, delimiter=','): - gene_caller_ids_set = set([]) - if gene_caller_ids: - if os.path.exists(gene_caller_ids): -- gene_caller_ids_set = set([g.strip() for g in open(gene_caller_ids, 'rU').readlines()]) -+ gene_caller_ids_set = set([g.strip() for g in open(gene_caller_ids, 'r').readlines()]) - else: - gene_caller_ids_set = set([g.strip() for g in gene_caller_ids.split(delimiter)]) - -@@ -1764,7 +1764,7 @@ def concatenate_files(dest_file, file_list, remove_concatenated_files=False): - - dest_file_obj = open(dest_file, 'w') - for chunk_path in file_list: -- for line in open(chunk_path, 'rU'): -+ for line in open(chunk_path, 'r'): - dest_file_obj.write(line) - - dest_file_obj.close() -@@ -3547,7 +3547,7 @@ def get_TAB_delimited_file_as_dictionary(file_path, expected_fields=None, dict_t - failed_lines = [] - column_mapping_for_line_failed = None - -- f = open(file_path, 'rU') -+ f = open(file_path, 'r') - - # learn the number of fields and reset the file: - num_fields = len(f.readline().strip('\n').split(separator)) diff --git a/280_anvio/anvio.eb b/280_anvio/anvio.eb deleted file mode 100644 index 21f29984..00000000 --- a/280_anvio/anvio.eb +++ /dev/null @@ -1,116 +0,0 @@ -# Author: Pavel Grochal (INUITS) -# License: GPLv2 - -easyblock = 'PythonBundle' - -name = 'anvio' -version = '8' - -homepage = 'https://merenlab.org/software/anvio/' -description = """An analysis and visualization platform for 'omics data.""" - -toolchain = {'name': 'foss', 'version': '2023a'} - -github_account = 'merenlab' - -dependencies = [ - ('Python', '3.11.3'), - ('SciPy-bundle', '2023.07'), - ('Pysam', '0.22.0'), - ('matplotlib', '3.7.2'), - ('prodigal', '2.6.3-20230127'), - ('Biopython', '1.83'), - ('h5py', '3.9.0'), - ('HMMER', '3.4'), - ('networkx', '3.1'), - ('numba', '0.58.1'), - ('statsmodels', '0.14.1'), - ('snakemake', '8.4.2'), - ('ETE', '3.1.3'), - ('dill', '0.3.7'), - ('Seaborn', '0.13.2'), - ('Levenshtein', '0.22.0'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('bottle', '0.12.25', { - 'checksums': ['e1a9c94970ae6d710b3fb4526294dfeb86f2cb4a81eff3a4b98dc40fb0e5e021'], - }), - ('colored', '2.2.4', { - 'checksums': ['595e1dd7f3b472ea5f12af21d2fec8a2ea2cf8f9d93e67180197330b26df9b61'], - }), - ('asgiref', '3.7.2', { - 'checksums': ['9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed'], - }), - ('sqlparse', '0.4.4', { - 'checksums': ['d446183e84b8349fa3061f0fe7f06ca94ba65b426946ffebe6e3e8295332420c'], - }), - ('Django', '5.0.1', { - 'checksums': ['8c8659665bc6e3a44fefe1ab0a291e5a3fb3979f9a8230be29de975e57e8f854'], - }), - ('illumina-utils', '2.13', { - 'checksums': ['e688ca221ea6178614073b72205fce7b4a54695237c7aa96713492ecd99bd56e'], - # python-Levenshtein was renamed to Levenshtein - 'preinstallopts': "sed -i 's/python-Levenshtein/Levenshtein/g' requirements.txt && ", - 'modulename': 'IlluminaUtils', - }), - ('mistune', '3.0.2', { - 'checksums': ['fc7f93ded930c92394ef2cb6f04a8aabab4117a91449e72dcc8dfa646a508be8'], - }), - ('multiprocess', '0.70.15', { - 'checksums': ['f20eed3036c0ef477b07a4177cf7c1ba520d9a2677870a4f47fe026f0cd6787e'], - }), - ('Paste', '3.7.1', { - 'checksums': ['6d07a8e1c7fa72b8cf403762a002f80d12c0384056956dd0a87cb9a3be64749a'], - }), - ('plotext', '5.2.8', { - 'checksums': ['319a287baabeb8576a711995f973a2eba631c887aa6b0f33ab016f12c50ffebe'], - }), - ('pyani', '0.2.12', { - 'checksums': ['4f56b217656f53416b333b69495a4ba8cde782e64e475e1481cb2213ce6b9388'], - }), - ('rich_argparse', '1.4.0', { - 'checksums': ['c275f34ea3afe36aec6342c2a2298893104b5650528941fb53c21067276dba19'], - }), - # need to stick to scikit-learn==1.2.2 with anvio 8, - # otherwise check for anvi-interactive that is run by anvi-self-test fails with: - # ValueError: node array from the pickle has an incompatible dtype - ('scikit-learn', '1.2.2', { - 'checksums': ['8429aea30ec24e7a8c7ed8a3fa6213adf3814a6efbea09e16e0a0c71e1a1a3d7'], - }), - (name, version, { - 'source_urls': ['https://github.com/merenlab/anvio/releases/download/v%(version)s/'], - 'patches': ['anvio-8_fix-rU.patch'], - 'checksums': [ - {'anvio-8.tar.gz': '13da84d48d7266a8986815efb024772fa26ad1c8a951d42897c3a51e3d924feb'}, - {'anvio-8_fix-rU.patch': '5eafa5962f59b563cfc3913fb688963b5fe052714c7d7c66b013af065e7a2fea'}, - ], - # remove too strict requirements for Python packages anvio depends on - 'preinstallopts': "sed -i -e 's/pandas==/pandas>=/g' -e 's/<=.*//g' requirements.txt && ", - }), -] - -local_binaries_list = [ - 'anvi-pan-genome', - 'anvi-script-reformat-fasta', - 'anvi-profile', - 'anvi-help', -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in local_binaries_list], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [ - "anvi-self-test --suite mini --no-interactive", - "anvi-pan-genome --help", - "anvi-script-reformat-fasta --help", - "anvi-profile --version", - "anvi-help --help", -] - -moduleclass = 'bio' diff --git a/280_anvio/prodigal-2.6.3-20230127-GCCcore-12.3.0.eb b/280_anvio/prodigal-2.6.3-20230127-GCCcore-12.3.0.eb deleted file mode 100644 index 9484ddf4..00000000 --- a/280_anvio/prodigal-2.6.3-20230127-GCCcore-12.3.0.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exe Escobedo -# License:: GPL-v3.0 -# -# Updated: Pavel Grochal (INUITS) -# -# Notes:: -## - -easyblock = 'MakeCp' - -name = 'prodigal' -local_commit = 'c1e2d36' -version = '2.6.3-20230127' - -homepage = 'https://github.com/hyattpd/Prodigal/' - -description = """Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) - is a microbial (bacterial and archaeal) gene finding program developed - at Oak Ridge National Laboratory and the University of Tennessee.""" - -toolchain = {'name': 'GCCcore', 'version': '12.3.0'} - -source_urls = ['https://github.com/hyattpd/Prodigal/archive/'] -sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}] -checksums = ['5b4ac9f99038b143c62f4d86d3f77bc801f64daca04c26ba9789bf0a64904ac9'] - -builddependencies = [('binutils', '2.40')] - -files_to_copy = [ - (['prodigal'], 'bin'), - (['*.h'], 'include'), - (['LICENSE'], 'license'), -] - -sanity_check_paths = { - 'files': ['bin/prodigal'], - 'dirs': ['include', 'license'], -} - -sanity_check_commands = ["prodigal -h"] - -moduleclass = 'bio' diff --git a/280_anvio/statsmodels-0.14.1-gfbf-2023a.eb b/280_anvio/statsmodels-0.14.1-gfbf-2023a.eb deleted file mode 100644 index 6c62326b..00000000 --- a/280_anvio/statsmodels-0.14.1-gfbf-2023a.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'statsmodels' -version = '0.14.1' - -homepage = 'https://www.statsmodels.org/' -description = """Statsmodels is a Python module that allows users to explore data, estimate statistical models, -and perform statistical tests.""" - -toolchain = {'name': 'gfbf', 'version': '2023a'} - -dependencies = [ - ('Python', '3.11.3'), - ('SciPy-bundle', '2023.07'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('patsy', '0.5.6', { - 'checksums': ['95c6d47a7222535f84bff7f63d7303f2e297747a598db89cf5c67f0c0c7d2cdb'], - }), - (name, version, { - 'checksums': ['2260efdc1ef89f39c670a0bd8151b1d0843567781bcafec6cda0534eb47a94f6'], - 'preinstallopts': """sed -i 's/name=DISTNAME/name=DISTNAME, version = "%(version)s"/g' setup.py && """, - }), -] - -moduleclass = 'math' diff --git a/33_scib_pipeline/2023-02-27T140057.258999.snakemake.log b/33_scib_pipeline/2023-02-27T140057.258999.snakemake.log deleted file mode 100644 index 8db986f7..00000000 --- a/33_scib_pipeline/2023-02-27T140057.258999.snakemake.log +++ /dev/null @@ -1,239 +0,0 @@ -Building DAG of jobs... -Using shell: /usr/bin/bash -Provided cores: 8 -Rules claiming more threads will be scaled down. -Job stats: -job count min threads max threads ----------------------- ------- ------------- ------------- -all 1 1 1 -convert_RDS_h5ad 5 1 1 -embeddings 1 1 1 -embeddings_single 13 1 1 -integration_prepare 2 1 1 -integration_run_python 6 1 1 -integration_run_r 5 1 1 -metrics 1 1 1 -metrics_single 13 1 1 -total 47 1 1 - -Select jobs to execute... - -[Mon Feb 27 14:00:57 2023] -Job 2: - Preparing adata - wildcards: hvg=full_feature,prep=h5ad,scaling=unscaled,scenario=test_data_r4 - parameters: batch 0 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:00:57 2023] -Job 10: - Preparing adata - wildcards: hvg=full_feature,prep=RDS,scaling=unscaled,scenario=test_data_r4 - parameters: batch 0 -r -l - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.RDS - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.RDS - -[Mon Feb 27 14:01:35 2023] -Finished job 2. -1 of 47 steps (2%) done -Select jobs to execute... - -[Mon Feb 27 14:01:35 2023] -Job 4: - Run scanorama on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:01:35 2023] -Job 6: - Run scgen on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: -c celltype - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scgen.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scgen.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:01:35 2023] -Job 1: - Run bbknn on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/bbknn.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/bbknn.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:01:35 2023] -Job 3: - Run combat on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:01:35 2023] -Job 5: - Run scanvi on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: -c celltype - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanvi.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanvi.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - - -[Mon Feb 27 14:01:35 2023] -Job 7: - Run scvi on unscaled data - feature selection: full_feature - dataset: test_data_r4 - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scvi.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scvi.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/prepare/unscaled/full_feature/adata_pre.h5ad - -[Mon Feb 27 14:02:20 2023] -Finished job 3. -2 of 47 steps (4%) done -Select jobs to execute... - -[Mon Feb 27 14:02:20 2023] -Job 35: - SAVE EMBEDDING - Scenario: test_data_r4 unscaled full_feature - Method: combat full - Input: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad - Output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/embeddings/unscaled/full_feature/combat_full.csv /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/embeddings/unscaled/full_feature/combat_full_batch.png /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/embeddings/unscaled/full_feature/combat_full_labels.png - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/embeddings/unscaled/full_feature/combat_full.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad - - -[Mon Feb 27 14:02:20 2023] -Job 21: - Metrics hvg=full_feature,method=combat,o_type=full,scaling=unscaled,scenario=test_data_r4 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/combat_full.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/combat_full.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad - -[Mon Feb 27 14:02:28 2023] -Finished job 4. -3 of 47 steps (6%) done -Select jobs to execute... - -[Mon Feb 27 14:02:28 2023] -Job 23: - Metrics hvg=full_feature,method=scanorama,o_type=embed,scaling=unscaled,scenario=test_data_r4 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_embed.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_embed.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad - -[Mon Feb 27 14:02:29 2023] -Finished job 1. -4 of 47 steps (9%) done -Select jobs to execute... - -[Mon Feb 27 14:02:29 2023] -Job 22: - Metrics hvg=full_feature,method=scanorama,o_type=full,scaling=unscaled,scenario=test_data_r4 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_full.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_full.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad - -[Mon Feb 27 14:02:37 2023] -Finished job 10. -5 of 47 steps (11%) done -Select jobs to execute... - -[Mon Feb 27 14:02:37 2023] -Job 20: - Metrics hvg=full_feature,method=bbknn,o_type=knn,scaling=unscaled,scenario=test_data_r4 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/bbknn_knn.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/bbknn_knn.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/bbknn.h5ad - -[Mon Feb 27 14:03:18 2023] -Error in rule metrics_single: - jobid: 20 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/bbknn.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/bbknn_knn.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/bbknn.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/bbknn_knn.csv -m bbknn -b batch -l celltype --type knn --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -[Mon Feb 27 14:03:20 2023] -Error in rule metrics_single: - jobid: 21 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/combat_full.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/combat.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/combat_full.csv -m combat -b batch -l celltype --type full --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -[Mon Feb 27 14:03:28 2023] -Finished job 35. -6 of 47 steps (13%) done -[Mon Feb 27 14:03:55 2023] -Error in rule metrics_single: - jobid: 23 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_embed.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_embed.csv -m scanorama -b batch -l celltype --type embed --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -[Mon Feb 27 14:03:55 2023] -Error in rule metrics_single: - jobid: 22 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_full.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/integration/unscaled/full_feature/scanorama.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/test_data_r4/metrics/unscaled/full_feature/scanorama_full.csv -m scanorama -b batch -l celltype --type full --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -[Mon Feb 27 14:08:08 2023] -Finished job 6. -7 of 47 steps (15%) done -[Mon Feb 27 14:15:11 2023] -Finished job 7. -8 of 47 steps (17%) done -[Mon Feb 27 14:16:04 2023] -Finished job 5. -9 of 47 steps (19%) done -Shutting down, this might take some time. -Exiting because a job execution failed. Look above for error message -Complete log: .snakemake/log/2023-02-27T140057.258999.snakemake.log diff --git a/33_scib_pipeline/2023-02-27T143552.799826.snakemake.log b/33_scib_pipeline/2023-02-27T143552.799826.snakemake.log deleted file mode 100644 index e64e612f..00000000 --- a/33_scib_pipeline/2023-02-27T143552.799826.snakemake.log +++ /dev/null @@ -1,140 +0,0 @@ -Building DAG of jobs... -Using shell: /usr/bin/bash -Provided cores: 1 (use --cores to define parallelism) -Rules claiming more threads will be scaled down. -Job stats: -job count min threads max threads ----------------------- ------- ------------- ------------- -integration_prepare 1 1 1 -integration_run_python 3 1 1 -metrics 1 1 1 -metrics_single 3 1 1 -total 8 1 1 - -Select jobs to execute... - -[Mon Feb 27 14:35:56 2023] -Job 3: - Preparing adata - wildcards: hvg=full_feature,prep=h5ad,scaling=unscaled,scenario=test_data_r4_small - parameters: batch 0 - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/prepare/unscaled/full_feature/adata_pre.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/prepare/unscaled/full_feature/adata_pre.h5ad - -[Mon Feb 27 14:36:34 2023] -Finished job 3. -1 of 8 steps (12%) done -Select jobs to execute... - -[Mon Feb 27 14:36:34 2023] -Job 5: - Run scanorama on unscaled data - feature selection: full_feature - dataset: test_data_r4_small - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/prepare/unscaled/full_feature/adata_pre.h5ad - -[Mon Feb 27 14:37:22 2023] -Finished job 5. -2 of 8 steps (25%) done -Select jobs to execute... - -[Mon Feb 27 14:37:22 2023] -Job 4: - Metrics hvg=full_feature,method=scanorama,o_type=embed,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad - -[Mon Feb 27 14:38:49 2023] -Error in rule metrics_single: - jobid: 4 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv -m scanorama -b batch -l celltype --type embed --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -Select jobs to execute... - -[Mon Feb 27 14:38:49 2023] -Job 7: - Run bbknn on unscaled data - feature selection: full_feature - dataset: test_data_r4_small - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/prepare/unscaled/full_feature/adata_pre.h5ad - -[Mon Feb 27 14:39:41 2023] -Finished job 7. -3 of 8 steps (38%) done -Select jobs to execute... - -[Mon Feb 27 14:39:41 2023] -Job 6: - Metrics hvg=full_feature,method=bbknn,o_type=knn,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad - -[Mon Feb 27 14:40:32 2023] -Error in rule metrics_single: - jobid: 6 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv -m bbknn -b batch -l celltype --type knn --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -Select jobs to execute... - -[Mon Feb 27 14:40:32 2023] -Job 2: - Run combat on unscaled data - feature selection: full_feature - dataset: test_data_r4_small - command: python - hvgs: - cell type option: - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/prepare/unscaled/full_feature/adata_pre.h5ad - -[Mon Feb 27 14:41:10 2023] -Finished job 2. -4 of 8 steps (50%) done -Select jobs to execute... - -[Mon Feb 27 14:41:10 2023] -Job 1: - Metrics hvg=full_feature,method=combat,o_type=full,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv; Input files updated by another job: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad - -[Mon Feb 27 14:42:18 2023] -Error in rule metrics_single: - jobid: 1 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv -m combat -b batch -l celltype --type full --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -Exiting because a job execution failed. Look above for error message -Complete log: .snakemake/log/2023-02-27T143552.799826.snakemake.log diff --git a/33_scib_pipeline/adjust_text.eb b/33_scib_pipeline/adjust_text.eb deleted file mode 100644 index c148c5ba..00000000 --- a/33_scib_pipeline/adjust_text.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'adjustText' -version = '0.7.3' - -homepage = 'https://github.com/Phlya/adjustText' -description = "A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps." - -toolchain = {'name': 'foss', 'version': '2022a'} - -sources = [SOURCE_TAR_GZ] -checksums = ['b90e275a95b4d980cbbac7967914b8d66477c09bc346a0b3c9e2125bba664b06'] - -dependencies = [ - ('Python', '3.10.4'), - ('matplotlib', '3.5.2'), - ('SciPy-bundle', '2022.05'), -] - -download_dep_fail = True -use_pip = True - -sanity_pip_check = True - -options = {'modulename': 'adjustText'} - -moduleclass = 'tools' diff --git a/33_scib_pipeline/dm-tree.eb b/33_scib_pipeline/dm-tree.eb deleted file mode 100644 index ec1b5b18..00000000 --- a/33_scib_pipeline/dm-tree.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'dm-tree' -version = '0.1.8' - -homepage = 'https://github.com/deepmind/tree' -description = """dm-tree provides tree, a library for working with nested data structures. In a way, -tree generalizes the builtin map function which only supports flat sequences, and -allows to apply a function to each "leaf" preserving the overall structure.""" - -toolchain = {'name': 'GCCcore', 'version': '11.3.0'} - -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('binutils', '2.38'), - ('Bazel', '5.1.1'), - ('CMake', '3.23.1'), -] - -dependencies = [ - ('Python', '3.10.4'), -] - -download_dep_fail = True - -use_pip = True -sanity_pip_check = True - -options = {'modulename': 'tree'} - -moduleclass = 'lib' diff --git a/33_scib_pipeline/easybuild-run_cmd-o_nv65ch.log b/33_scib_pipeline/easybuild-run_cmd-o_nv65ch.log deleted file mode 100644 index f469c586..00000000 --- a/33_scib_pipeline/easybuild-run_cmd-o_nv65ch.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -ERROR: Directory '.' is not installable. Neither 'setup.py' nor 'pyproject.toml' found. diff --git a/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch b/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch deleted file mode 100644 index 4d09309e..00000000 --- a/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch +++ /dev/null @@ -1,95 +0,0 @@ -fix build on top of LLVM 14, -like this: https://github.com/numba/llvmlite/issues/897 -diff -ruN llvmlite-0.39.1.orig/ffi/passmanagers.cpp llvmlite-0.39.1/ffi/passmanagers.cpp ---- llvmlite-0.39.1.orig/ffi/passmanagers.cpp 2022-09-01 13:47:22.477959200 +0000 -+++ llvmlite-0.39.1/ffi/passmanagers.cpp 2023-01-10 16:59:33.776510869 +0000 -@@ -8,6 +8,7 @@ - #include "llvm/IR/DiagnosticInfo.h" - #include "llvm/IR/DiagnosticPrinter.h" - #include "llvm/IR/LegacyPassManager.h" -+#include "llvm/Pass.h" - #include "llvm/IR/Module.h" - #include "llvm/Support/FileSystem.h" - #include "llvm/Support/ToolOutputFile.h" -@@ -17,9 +18,6 @@ - #include "llvm-c/Transforms/IPO.h" - #include "llvm-c/Transforms/Scalar.h" - #include "llvm/IR/LegacyPassManager.h" --#if LLVM_VERSION_MAJOR > 11 --#include "llvm/IR/RemarkStreamer.h" --#endif - #include "llvm/IR/LLVMRemarkStreamer.h" - #include "llvm/Remarks/RemarkStreamer.h" - #include "llvm/Transforms/IPO.h" -diff -ruN llvmlite-0.39.1.orig/ffi/targets.cpp llvmlite-0.39.1/ffi/targets.cpp ---- llvmlite-0.39.1.orig/ffi/targets.cpp 2022-09-01 13:47:22.449959300 +0000 -+++ llvmlite-0.39.1/ffi/targets.cpp 2023-01-10 16:59:54.544810234 +0000 -@@ -6,7 +6,7 @@ - #include "llvm/IR/LegacyPassManager.h" - #include "llvm/IR/Type.h" - #include "llvm/Support/Host.h" --#include "llvm/Support/TargetRegistry.h" -+#include "llvm/MC/TargetRegistry.h" - #include "llvm/Target/TargetMachine.h" - - #include -@@ -204,7 +204,6 @@ - rm = Reloc::DynamicNoPIC; - - TargetOptions opt; -- opt.PrintMachineCode = PrintMC; - opt.MCOptions.ABIName = ABIName; - - bool jit = JIT; -diff -ruN llvmlite-0.39.1.orig/ffi/value.cpp llvmlite-0.39.1/ffi/value.cpp ---- llvmlite-0.39.1.orig/ffi/value.cpp 2022-09-01 13:47:22.449959300 +0000 -+++ llvmlite-0.39.1/ffi/value.cpp 2023-01-10 16:59:09.616162588 +0000 -@@ -154,7 +154,7 @@ - Argument *arg = unwrap(A); - unsigned argno = arg->getArgNo(); - AttributeSet attrs = -- arg->getParent()->getAttributes().getParamAttributes(argno); -+ arg->getParent()->getAttributes().getParamAttrs(argno); - return wrap(new AttributeSetIterator(attrs.begin(), attrs.end())); - } - -diff -ruN llvmlite-0.39.1.orig/llvmlite/tests/test_binding.py llvmlite-0.39.1/llvmlite/tests/test_binding.py ---- llvmlite-0.39.1.orig/llvmlite/tests/test_binding.py 2022-09-01 13:47:22.481959000 +0000 -+++ llvmlite-0.39.1/llvmlite/tests/test_binding.py 2023-01-10 17:00:04.868959051 +0000 -@@ -18,6 +18,16 @@ - from llvmlite.tests import TestCase - - -+def clean_string_whitespace(x: str) -> str: -+ # Remove trailing whitespace from the end of each line -+ x = re.sub(r"\s+$", "", x, flags=re.MULTILINE) -+ # Remove intermediate blank lines -+ x = re.sub(r"\n\s*\n", r"\n", x, flags=re.MULTILINE) -+ # Remove extraneous whitespace from the beginning and end of the string -+ x = x.strip() -+ return x -+ -+ - # arvm7l needs extra ABI symbols to link successfully - if platform.machine() == 'armv7l': - llvm.load_library_permanently('libgcc_s.so.1') -@@ -555,7 +565,10 @@ - bd = ir.IRBuilder(fn.append_basic_block(name="<>!*''#")) - bd.ret(ir.Constant(ir.IntType(32), 12345)) - asm = str(mod) -- self.assertEqual(asm, asm_nonalphanum_blocklabel) -+ self.assertEqual( -+ clean_string_whitespace(asm), -+ clean_string_whitespace(asm_nonalphanum_blocklabel) -+ ) - - def test_global_context(self): - gcontext1 = llvm.context.get_global_context() -@@ -640,7 +653,7 @@ - def test_version(self): - major, minor, patch = llvm.llvm_version_info - # one of these can be valid -- valid = [(11,)] -+ valid = [(11,), (12,), (13,), (14,)] - self.assertIn((major,), valid) - self.assertIn(patch, range(10)) diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-0_u9rxrr.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-0_u9rxrr.log deleted file mode 100644 index eb7d8a90..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-0_u9rxrr.log +++ /dev/null @@ -1,5 +0,0 @@ -# output for command: python -c "import scib_pipeline" - -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module named 'scib_pipeline' diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-1ztvri2d.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-1ztvri2d.log deleted file mode 100644 index 579e9b94..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-1ztvri2d.log +++ /dev/null @@ -1,56 +0,0 @@ -# output for command: export PYTHONPATH=$PWD:$PYTHONPATH && echo $PYTHONPATH && sed -i -e 's/trvaep\.utils/\.\.utils/g' trvaep/model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [35 lines of output] - Matplotlib is building the font cache; this may take a moment. - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 2, in - from .train import Trainer - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/train.py", line 7, in - from trvaep.model._losses import MSE_kl, mmd - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 18, in - from get_version import get_version - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 290, in - __version__ = get_version(__file__, vcs="git") - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 273, in get_version - version = method(parent) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 118, in get_version_from_vcs - vcs_root = find_vcs_root(parent, vcs=vcs) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 146, in find_vcs_root - from dunamai import _detect_vcs, Vcs - ModuleNotFoundError: No module named 'dunamai' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-2fwd0n4v.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-2fwd0n4v.log deleted file mode 100644 index bbc17c84..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-2fwd0n4v.log +++ /dev/null @@ -1,47 +0,0 @@ -# output for command: export PYTHONPATH=$PWD:$PYTHONPATH && echo $PYTHONPATH && sed -i -e 's/trvaep\.utils/utils/g' trvaep/model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from utils import one_hot_encoder - ModuleNotFoundError: No module named 'utils' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-404be21y.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-404be21y.log deleted file mode 100644 index 89ffc3a4..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-404be21y.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: sed -i -e 's/trvaep\.utils/.utils/g' model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -sed: can't read model/helper_module.py: No such file or directory diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-5ce_nhac.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-5ce_nhac.log deleted file mode 100644 index 6bb0264d..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-5ce_nhac.log +++ /dev/null @@ -1,49 +0,0 @@ -# output for command: sed -i -e 's/trvaep\.utils/.utils/g' model/helper_module.py /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -sed: invalid option -- 'm' -Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]... - - -n, --quiet, --silent - suppress automatic printing of pattern space - -e script, --expression=script - add the script to the commands to be executed - -f script-file, --file=script-file - add the contents of script-file to the commands to be executed - --follow-symlinks - follow symlinks when processing in place - -i[SUFFIX], --in-place[=SUFFIX] - edit files in place (makes backup if SUFFIX supplied) - -c, --copy - use copy instead of rename when shuffling files in -i mode - -b, --binary - does nothing; for compatibility with WIN32/CYGWIN/MSDOS/EMX ( - open files in binary mode (CR+LFs are not treated specially)) - -l N, --line-length=N - specify the desired line-wrap length for the `l' command - --posix - disable all GNU extensions. - -E, -r, --regexp-extended - use extended regular expressions in the script - (for portability use POSIX -E). - -s, --separate - consider files as separate rather than as a single, - continuous long stream. - --sandbox - operate in sandbox mode (disable e/r/w commands). - -u, --unbuffered - load minimal amounts of data from the input files and flush - the output buffers more often - -z, --null-data - separate lines by NUL characters - --help - display this help and exit - --version - output version information and exit - -If no -e, --expression, -f, or --file option is given, then the first -non-option argument is taken as the sed script to interpret. All -remaining arguments are names of input files; if no input files are -specified, then the standard input is read. - -GNU sed home page: . -General help using GNU software: . diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-70rsrs64.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-70rsrs64.log deleted file mode 100644 index 079ceb5e..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-70rsrs64.log +++ /dev/null @@ -1,55 +0,0 @@ -# output for command: export PYTHONPATH=$PWD:$PYTHONPATH && echo $PYTHONPATH && sed -i -e 's/trvaep\.utils/\.\.utils/g' trvaep/model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [34 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 2, in - from .train import Trainer - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/train.py", line 7, in - from trvaep.model._losses import MSE_kl, mmd - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 18, in - from get_version import get_version - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 290, in - __version__ = get_version(__file__, vcs="git") - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 273, in get_version - version = method(parent) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 118, in get_version_from_vcs - vcs_root = find_vcs_root(parent, vcs=vcs) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages/get_version/__init__.py", line 146, in find_vcs_root - from dunamai import _detect_vcs, Vcs - ModuleNotFoundError: No module named 'dunamai' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-747irix1.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-747irix1.log deleted file mode 100644 index eb7d8a90..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-747irix1.log +++ /dev/null @@ -1,5 +0,0 @@ -# output for command: python -c "import scib_pipeline" - -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module named 'scib_pipeline' diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-_4lxuxcz.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-_4lxuxcz.log deleted file mode 100644 index 99952e93..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-_4lxuxcz.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-_o4q3y79.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-_o4q3y79.log deleted file mode 100644 index 793e54d8..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-_o4q3y79.log +++ /dev/null @@ -1,43 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: hatchling - Building wheel for hatchling (pyproject.toml): started - Building wheel for hatchling (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Building wheel for hatchling (pyproject.toml) did not run successfully. - exit code: 1 - > [24 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel - return _build_backend().build_wheel(wheel_directory, config_settings, - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/ouroboros.py", line 71, in build_wheel - return os.path.basename(next(builder.build(wheel_directory, ['standard']))) - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/plugin/interface.py", line 144, in build - artifact = version_api[version](directory, **build_data) - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/wheel.py", line 337, in build_standard - for included_file in self.recurse_included_files(): - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/plugin/interface.py", line 166, in recurse_included_files - yield from self.recurse_explicit_files(self.config.only_include) - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/plugin/interface.py", line 231, in recurse_explicit_files - if self.config.include_path(relative_file_path, explicit=True, is_package=is_package): - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/config.py", line 81, in include_path - and not self.path_is_excluded(relative_path) - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/config.py", line 93, in path_is_excluded - if self.exclude_spec is None: - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/hatchling/hatchling-1.11.1/src/hatchling/builders/config.py", line 188, in exclude_spec - self.__exclude_spec = pathspec.GitIgnoreSpec.from_lines(all_exclude_patterns) - AttributeError: module 'pathspec' has no attribute 'GitIgnoreSpec' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. - ERROR: Failed building wheel for hatchling -Failed to build hatchling -ERROR: Could not build wheels for hatchling, which is required to install pyproject.toml-based projects diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-cijg3r6p.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-cijg3r6p.log deleted file mode 100644 index fa634680..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-cijg3r6p.log +++ /dev/null @@ -1,47 +0,0 @@ -# output for command: export PYTHONPATH=$PWD/trvaep/model/:$PYTHONPATH && echo $PYTHONPATH && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-dgwu73qy.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-dgwu73qy.log deleted file mode 100644 index 0dd97790..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-dgwu73qy.log +++ /dev/null @@ -1,29 +0,0 @@ -# output for command: python setup.py test && /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2021b --no-pkg-config --no-deps --ignore-installed --no-index --no-build-isolation . - -running test -WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. -running egg_info -writing leidenalg.egg-info/PKG-INFO -writing dependency_links to leidenalg.egg-info/dependency_links.txt -writing requirements to leidenalg.egg-info/requires.txt -writing top-level names to leidenalg.egg-info/top_level.txt -reading manifest file 'leidenalg.egg-info/SOURCES.txt' -reading manifest template 'MANIFEST.in' -warning: no files found matching 'pyproject.toml' -warning: no files found matching 'include/' -warning: no previously-included files found matching '.git*' -warning: no previously-included files found matching '*.yml' -warning: no previously-included files found matching 'release*' -no previously-included directories found matching '.github' -adding license file 'LICENSE' -writing manifest file 'leidenalg.egg-info/SOURCES.txt' -running build_ext -running build_c_core -We are going to build the C core of igraph. - Source folder: vendor/source/igraph - Build folder: vendor/build/igraph - Install folder: vendor/install/igraph - -igraph uses CMake as the build system. You need to install CMake before compiling igraph. -Build failed for the C core of igraph. - diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-dll4ynth.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-dll4ynth.log deleted file mode 100644 index 8091bbcb..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-dll4ynth.log +++ /dev/null @@ -1,5 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip check - -scib 1.1.1 requires louvain, which is not installed. -scib 1.1.1 requires scikit-misc, which is not installed. -scib 1.1.1 has requirement igraph>=0.10, but you have igraph 0.9.8. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-eksoxmvb.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-eksoxmvb.log deleted file mode 100644 index 99952e93..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-eksoxmvb.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-f9hbppbl.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-f9hbppbl.log deleted file mode 100644 index 7e5d504b..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-f9hbppbl.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check - -scvi-tools 0.19.0 has requirement pytorch-lightning<1.8,>=1.7.0, but you have pytorch-lightning 1.8.4. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-gihiru5h.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-gihiru5h.log deleted file mode 100644 index 543d71a5..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-gihiru5h.log +++ /dev/null @@ -1,9 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check - -scib 0.1.1 requires memory-profiler, which is not installed. -scgen 2.1.0 requires scvi-tools, which is not installed. -scanorama 1.7.3 requires annoy, which is not installed. -scanorama 1.7.3 requires fbpca, which is not installed. -scanorama 1.7.3 requires geosketch, which is not installed. -bbknn 1.5.1 requires annoy, which is not installed. -hatchling 1.8.1 has requirement packaging>=21.3, but you have packaging 20.9. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-isuwppn7.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-isuwppn7.log deleted file mode 100644 index dc3b40f4..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-isuwppn7.log +++ /dev/null @@ -1,44 +0,0 @@ -# output for command: sed -i -e 's/trvaep\.utils/\.\.utils/g' trvaep/model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [24 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 2, in - from .train import Trainer - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/train.py", line 7, in - from trvaep.model._losses import MSE_kl, mmd - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-ja5oed1e.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-ja5oed1e.log deleted file mode 100644 index 62641378..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-ja5oed1e.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-k4huunx1.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-k4huunx1.log deleted file mode 100644 index ffc7bdb2..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-k4huunx1.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: export PYTHONPATH=$PWD/trvaep/model/:$PYTHONPATH && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-l106qcye.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-l106qcye.log deleted file mode 100644 index 001f0db0..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-l106qcye.log +++ /dev/null @@ -1,4 +0,0 @@ -# output for command: sed -i -e 's/trvaep\.utils/.utils/g model/helper_module.py /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -/bin/bash: -c: line 0: unexpected EOF while looking for matching `'' -/bin/bash: -c: line 1: syntax error: unexpected end of file diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-l2hqgmbn.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-l2hqgmbn.log deleted file mode 100644 index dd82ea33..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-l2hqgmbn.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: sed -i -e 's/trvaep\.utils/.utils/g' trvaep/model/helper_module.py && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from .utils import one_hot_encoder - ModuleNotFoundError: No module named 'flit_core.dummy.import1.model.utils' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-m7g0nqn7.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-m7g0nqn7.log deleted file mode 100644 index 62641378..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-m7g0nqn7.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-m8z93vhi.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-m8z93vhi.log deleted file mode 100644 index 62641378..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-m8z93vhi.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-miprzirp.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-miprzirp.log deleted file mode 100644 index 652b52a3..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-miprzirp.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check - -No broken requirements found. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-qnyw_fk3.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-qnyw_fk3.log deleted file mode 100644 index 79ee0cb1..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-qnyw_fk3.log +++ /dev/null @@ -1,11 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2021b --no-pkg-config --no-deps --ignore-installed --no-index --no-build-isolation . - - -Usage: - /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install [options] [package-index-options] ... - /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install [options] -r [package-index-options] ... - /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install [options] [-e] ... - /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install [options] [-e] ... - /apps/gent/RHEL8/haswell-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -m pip install [options] ... - -no such option: --no-pkg-config diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-qpicc6rm.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-qpicc6rm.log deleted file mode 100644 index 31d6a1f4..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-qpicc6rm.log +++ /dev/null @@ -1,44 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [24 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 2, in - import torch - ModuleNotFoundError: No module named 'torch' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-qvr4lwde.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-qvr4lwde.log deleted file mode 100644 index 26cd0b6a..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-qvr4lwde.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check - -trvaep 0.1.0 requires future-fstrings, which is not installed. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-ttorcg0f.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-ttorcg0f.log deleted file mode 100644 index c2878698..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-ttorcg0f.log +++ /dev/null @@ -1,9 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check - -scvi-tools 0.14.6 requires docrep, which is not installed. -scvi-tools 0.14.6 requires openpyxl, which is not installed. -scvi-tools 0.14.6 requires pyro-ppl, which is not installed. -scvi-tools 0.14.6 requires pytorch-lightning, which is not installed. -scvi-tools 0.14.6 requires rich, which is not installed. -scvi-tools 0.14.6 requires torchmetrics, which is not installed. -scgen 2.1.0 has requirement scvi-tools>=0.15.0, but you have scvi-tools 0.14.6. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-u3mdvk8k.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-u3mdvk8k.log deleted file mode 100644 index 7731f1ff..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-u3mdvk8k.log +++ /dev/null @@ -1,58 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri/anndata2ri-1.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [38 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 156, in prepare_metadata_for_build_wheel - hook = backend.prepare_metadata_for_build_wheel - AttributeError: module 'hatchling.build' has no attribute 'prepare_metadata_for_build_wheel' - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 1227, in cached - self._cached = self.source.get_version_data()['version'] - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 1273, in source - raise UnknownPluginError(f'Unknown version source: {source_name}') - hatchling.plugin.exceptions.UnknownPluginError: Unknown version source: vcs - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 160, in prepare_metadata_for_build_wheel - whl_basename = backend.build_wheel(metadata_directory, config_settings) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/build.py", line 41, in build_wheel - return os.path.basename(next(builder.build(wheel_directory, ['standard']))) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/builders/plugin/interface.py", line 80, in build - self.metadata.validate_fields() - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 168, in validate_fields - _ = self.version - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 55, in version - self._set_version() - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 150, in _set_version - version = self.hatch.version.cached - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 1229, in cached - raise type(e)(f'Error getting the version from source `{self.source.PLUGIN_NAME}`: {e}') from None - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages/hatchling/metadata/core.py", line 1273, in source - raise UnknownPluginError(f'Unknown version source: {source_name}') - hatchling.plugin.exceptions.UnknownPluginError: Unknown version source: vcs - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-ur2ibm2j.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-ur2ibm2j.log deleted file mode 100644 index c784c123..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-ur2ibm2j.log +++ /dev/null @@ -1,169 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0 --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: dm-tree - Building wheel for dm-tree (setup.py): started - Building wheel for dm-tree (setup.py): finished with status 'error' - error: subprocess-exited-with-error - - python setup.py bdist_wheel did not run successfully. - exit code: 1 - > [64 lines of output] - running bdist_wheel - running build - running build_py - creating build - creating build/lib.linux-x86_64-cpython-310 - creating build/lib.linux-x86_64-cpython-310/tree - copying tree/__init__.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/sequence.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/tree_benchmark.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/tree_test.py -> build/lib.linux-x86_64-cpython-310/tree - running build_ext - Traceback (most recent call last): - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 77, in _check_build_environment - subprocess.check_call(['cmake', '--version']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 364, in check_call - retcode = call(*popenargs, **kwargs) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 345, in call - with Popen(*popenargs, **kwargs) as p: - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 966, in __init__ - self._execute_child(args, executable, preexec_fn, close_fds, - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 1842, in _execute_child - raise child_exception_type(errno_num, err_msg, err_filename) - FileNotFoundError: [Errno 2] No such file or directory: 'cmake' - - The above exception was the direct cause of the following exception: - - Traceback (most recent call last): - File "", line 2, in - File "", line 34, in - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 124, in - setuptools.setup( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/__init__.py", line 87, in setup - return distutils.core.setup(**attrs) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 148, in setup - return run_commands(dist) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 163, in run_commands - dist.run_commands() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands - self.run_command(cmd) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 299, in run - self.run_command('build') - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command - self.distribution.run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 136, in run - self.run_command(cmd_name) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command - self.distribution.run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 70, in run - self._check_build_environment() - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 80, in _check_build_environment - raise RuntimeError( - RuntimeError: CMake must be installed to build the following extensions: _tree - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. - ERROR: Failed building wheel for dm-tree - Running setup.py clean for dm-tree -Failed to build dm-tree -Installing collected packages: dm-tree - Running setup.py install for dm-tree: started - Running setup.py install for dm-tree: finished with status 'error' - error: subprocess-exited-with-error - - Running setup.py install for dm-tree did not run successfully. - exit code: 1 - > [68 lines of output] - running install - /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. - warnings.warn( - running build - running build_py - creating build - creating build/lib.linux-x86_64-cpython-310 - creating build/lib.linux-x86_64-cpython-310/tree - copying tree/__init__.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/sequence.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/tree_benchmark.py -> build/lib.linux-x86_64-cpython-310/tree - copying tree/tree_test.py -> build/lib.linux-x86_64-cpython-310/tree - running build_ext - Traceback (most recent call last): - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 77, in _check_build_environment - subprocess.check_call(['cmake', '--version']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 364, in check_call - retcode = call(*popenargs, **kwargs) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 345, in call - with Popen(*popenargs, **kwargs) as p: - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 966, in __init__ - self._execute_child(args, executable, preexec_fn, close_fds, - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 1842, in _execute_child - raise child_exception_type(errno_num, err_msg, err_filename) - FileNotFoundError: [Errno 2] No such file or directory: 'cmake' - - The above exception was the direct cause of the following exception: - - Traceback (most recent call last): - File "", line 2, in - File "", line 34, in - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 124, in - setuptools.setup( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/__init__.py", line 87, in setup - return distutils.core.setup(**attrs) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 148, in setup - return run_commands(dist) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 163, in run_commands - dist.run_commands() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands - self.run_command(cmd) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/command/install.py", line 68, in run - return orig.install.run(self) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/command/install.py", line 670, in run - self.run_command('build') - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command - self.distribution.run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 136, in run - self.run_command(cmd_name) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command - self.distribution.run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/dist.py", line 1214, in run_command - super().run_command(command) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 986, in run_command - cmd_obj.run() - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 70, in run - self._check_build_environment() - File "/tmp/vsc43810/easybuild/build/dmtree/0.1.8/GCCcore-11.3.0/dm-tree-0.1.8/setup.py", line 80, in _check_build_environment - raise RuntimeError( - RuntimeError: CMake must be installed to build the following extensions: _tree - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: legacy-install-failure - - Encountered error while trying to install package. -> dm-tree - -note: This is an issue with the package mentioned above, not pip. -hint: See above for output from the failure. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-wk_0nr26.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-wk_0nr26.log deleted file mode 100644 index b05e32c4..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-wk_0nr26.log +++ /dev/null @@ -1,185 +0,0 @@ -# output for command: CFLAGS="$CFLAGS -pthread" /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/cryptography/cryptography-39.0.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: cryptography - Building wheel for cryptography (pyproject.toml): started - Building wheel for cryptography (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Building wheel for cryptography (pyproject.toml) did not run successfully. - exit code: 1 - > [166 lines of output] - running bdist_wheel - running build - running build_py - creating build - creating build/lib.linux-x86_64-cpython-310 - creating build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/exceptions.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/__about__.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/fernet.py -> build/lib.linux-x86_64-cpython-310/cryptography - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat - copying src/cryptography/hazmat/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat - copying src/cryptography/hazmat/_oid.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat - creating build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/certificate_transparency.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/oid.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/general_name.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/name.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/extensions.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/ocsp.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/constant_time.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_serialization.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/padding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/hashes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/poly1305.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/keywrap.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/cmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_cipheralgorithm.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_asymmetric.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/hmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - copying src/cryptography/hazmat/bindings/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends - copying src/cryptography/hazmat/backends/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/pkcs7.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/ssh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/pkcs12.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/algorithms.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/modes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/aead.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/totp.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/hotp.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/types.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/x25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ec.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/padding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ed25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/dsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/dh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/rsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ed448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/x448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/scrypt.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/pbkdf2.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/kbkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/x963kdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/hkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/concatkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/binding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/_conditional.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/decode_asn1.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/x25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ec.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/backend.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ed25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/hashes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/aead.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/poly1305.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ciphers.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/cmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/dsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/dh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/rsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ed448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/x448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/hmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - running egg_info - writing src/cryptography.egg-info/PKG-INFO - writing dependency_links to src/cryptography.egg-info/dependency_links.txt - writing requirements to src/cryptography.egg-info/requires.txt - writing top-level names to src/cryptography.egg-info/top_level.txt - listing git files failed - pretending there aren't any - reading manifest file 'src/cryptography.egg-info/SOURCES.txt' - reading manifest template 'MANIFEST.in' - no previously-included directories found matching 'docs/_build' - warning: no previously-included files found matching 'vectors' - warning: no previously-included files matching '*' found under directory 'vectors' - warning: no previously-included files matching '*' found under directory '.github' - warning: no previously-included files found matching 'release.py' - warning: no previously-included files found matching '.readthedocs.yml' - warning: no previously-included files found matching 'dev-requirements.txt' - warning: no previously-included files found matching 'tox.ini' - warning: no previously-included files found matching 'mypy.ini' - warning: no previously-included files matching '*' found under directory '.circleci' - adding license file 'LICENSE' - adding license file 'LICENSE.APACHE' - adding license file 'LICENSE.BSD' - adding license file 'LICENSE.PSF' - writing manifest file 'src/cryptography.egg-info/SOURCES.txt' - copying src/cryptography/py.typed -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/hazmat/bindings/_openssl.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/__init__.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/asn1.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/ocsp.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/pkcs7.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/x509.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - running build_ext - running build_rust - - =============================DEBUG ASSISTANCE============================= - If you are seeing a compilation error please try the following steps to - successfully install cryptography: - 1) Upgrade to the latest pip and try again. This will fix errors for most - users. See: https://pip.pypa.io/en/stable/installing/#upgrading-pip - 2) Read https://cryptography.io/en/latest/installation/ for specific - instructions for your platform. - 3) Check our frequently asked questions for more information: - https://cryptography.io/en/latest/faq/ - 4) Ensure you have a recent Rust toolchain installed: - https://cryptography.io/en/latest/installation/#rust - - Python: 3.10.4 - platform: Linux-4.18.0-372.36.1.el8_6.x86_64-x86_64-with-glibc2.28 - pip: 22.0.4 - setuptools: 62.1.0 - setuptools_rust: 1.3.0 - rustc: n/a - =============================DEBUG ASSISTANCE============================= - - error: can't find Rust compiler - - If you are using an outdated pip version, it is possible a prebuilt wheel is available for this package but pip is not able to install from it. Installing from the wheel would avoid the need for a Rust compiler. - - To update pip, run: - - pip install --upgrade pip - - and then retry package installation. - - If you did intend to build this package from source, try installing a Rust compiler from your system package manager and ensure it is on the PATH during installation. Alternatively, rustup (available at https://rustup.rs) is the recommended way to download and update the Rust compiler toolchain. - - This package requires Rust >=1.48.0. - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. - ERROR: Failed building wheel for cryptography -Failed to build cryptography -ERROR: Could not build wheels for cryptography, which is required to install pyproject.toml-based projects diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-xdc7vgjt.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-xdc7vgjt.log deleted file mode 100644 index 99952e93..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-xdc7vgjt.log +++ /dev/null @@ -1,46 +0,0 @@ -# output for command: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. diff --git a/33_scib_pipeline/old_logz/easybuild-run_cmd-xlmnmgk9.log b/33_scib_pipeline/old_logz/easybuild-run_cmd-xlmnmgk9.log deleted file mode 100644 index e87ccd24..00000000 --- a/33_scib_pipeline/old_logz/easybuild-run_cmd-xlmnmgk9.log +++ /dev/null @@ -1,3 +0,0 @@ -# output for command: sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . - -sed: can't read setup.cfg: No such file or directory diff --git a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230120.170116.dPOMi.log b/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230120.170116.dPOMi.log deleted file mode 100644 index 3d1877e7..00000000 --- a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230120.170116.dPOMi.log +++ /dev/null @@ -1,4576 +0,0 @@ -== 2023-01-20 17:01:16,801 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host gligar07.gastly.os. -== 2023-01-20 17:01:16,802 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-20 17:01:16,802 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-20 17:01:16,802 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-20 17:01:16,802 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:01:16,802 easyblock.py:288 INFO Init completed for application name scib-pipeline version 0.2.0 -== 2023-01-20 17:01:16,802 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-20 17:01:16,803 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/scib-pipeline'], 'options': {}} -== 2023-01-20 17:01:16,803 easyblock.py:4151 INFO Obtained application instance of for scib-pipeline (easyblock: PythonBundle) -== 2023-01-20 17:01:16,803 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:16,803 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:16,803 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:16,804 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:16,805 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-20 17:01:16,806 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215 (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:16,806 easyblock.py:4405 INFO Dumped easyconfig instance to /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/scib-pipeline-0.2.0-foss-2022a.eb -== 2023-01-20 17:01:16,806 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/easyblocks (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:16,807 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/easyblocks/pythonbundle.py -== 2023-01-20 17:01:16,807 easyblock.py:4385 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/easyblocks -== 2023-01-20 17:01:16,807 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/easyblocks/bundle.py -== 2023-01-20 17:01:16,807 easyblock.py:4385 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc43810/eb-ikna97d3/reprod_20230120170116_3785215/easyblocks -== 2023-01-20 17:01:16,807 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1 -== 2023-01-20 17:01:16,808 build_log.py:267 INFO building and installing scib-pipeline/0.2.0-foss-2022a... -== 2023-01-20 17:01:16,813 filetools.py:2011 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock does not exist -== 2023-01-20 17:01:16,813 filetools.py:1952 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-20 17:01:16,813 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:16,814 filetools.py:1961 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-20 17:01:16,814 build_log.py:267 INFO fetching files... -== 2023-01-20 17:01:16,817 easyblock.py:3877 INFO Starting fetch step -== 2023-01-20 17:01:16,817 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:16,817 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:16,817 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:16,818 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:16,818 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-20 17:01:16,818 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-20 17:01:16,818 easyblock.py:2327 INFO no sources provided -== 2023-01-20 17:01:16,818 easyblock.py:2342 INFO no patches provided -== 2023-01-20 17:01:16,819 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata-0.8.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,819 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,819 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,819 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,820 easyblock.py:844 INFO Found file anndata-0.8.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-20 17:01:16,821 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: ef1130964bcb6c3ca3ed161b74e46a06 -== 2023-01-20 17:01:16,821 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: 94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e -== 2023-01-20 17:01:16,821 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,822 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,822 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,822 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,888 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/s/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/s/scib-pipeline/checksums.json, /apps/gent/sources/scib-pipeline/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-20 17:01:16,888 easyblock.py:685 INFO Checksum for extension source anndata-0.8.0.tar.gz verified -== 2023-01-20 17:01:16,888 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,889 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata2ri-1.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,889 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,889 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,889 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,890 easyblock.py:844 INFO Found file anndata2ri-1.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-20 17:01:16,891 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: 8145ef2c660bd7cba7b2cf10b027295e -== 2023-01-20 17:01:16,891 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: bf5e5d5184efe49eb00f7d524225a9867e3dd77c6ed291eb251168fe4dc429e7 -== 2023-01-20 17:01:16,891 easyblock.py:685 INFO Checksum for extension source anndata2ri-1.1.tar.gz verified -== 2023-01-20 17:01:16,891 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,892 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,892 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,892 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,892 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,892 easyblock.py:844 INFO Found file trvaep-0.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-20 17:01:16,894 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: df09bb666d1db2ad1190f3e718586a9f -== 2023-01-20 17:01:16,895 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: e4ee8e823e67e4f11b23cdf408d900f7aba9f31449eeeb54e5bbc8aa84dfc811 -== 2023-01-20 17:01:16,896 easyblock.py:685 INFO Checksum for extension source trvaep-0.1.0.tar.gz verified -== 2023-01-20 17:01:16,896 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,896 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scgen-2.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,896 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,896 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,896 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,897 easyblock.py:844 INFO Found file scgen-2.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-20 17:01:16,897 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 536ec702d840c41f81e1b6c2200c6718 -== 2023-01-20 17:01:16,897 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 0f3f23ee596b20906c22b6a324ca930b70b78c93e18d9c1846214ee84ab872bf -== 2023-01-20 17:01:16,897 easyblock.py:685 INFO Checksum for extension source scgen-2.1.0.tar.gz verified -== 2023-01-20 17:01:16,898 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,898 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for bbknn-1.5.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,898 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,898 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,898 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,899 easyblock.py:844 INFO Found file bbknn-1.5.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-20 17:01:16,899 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 9776fdf80cf3e15ef9fb307ab36be6f0 -== 2023-01-20 17:01:16,899 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 16da9c778ddfe363f8a3fa0d72707694d2217f94d3a87482336e8a2c6beb2160 -== 2023-01-20 17:01:16,899 easyblock.py:685 INFO Checksum for extension source bbknn-1.5.1.tar.gz verified -== 2023-01-20 17:01:16,899 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,900 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for llvmlite-0.39.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,900 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,900 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,900 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,900 easyblock.py:844 INFO Found file llvmlite-0.39.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/llvmlite-0.39.1.tar.gz -== 2023-01-20 17:01:16,901 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/llvmlite-0.39.1.tar.gz: b095ae3e70642167acb4a3d6e05cba3d -== 2023-01-20 17:01:16,902 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/llvmlite-0.39.1.tar.gz: b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572 -== 2023-01-20 17:01:16,902 easyblock.py:685 INFO Checksum for extension source llvmlite-0.39.1.tar.gz verified -== 2023-01-20 17:01:16,902 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for llvmlite-0.39.1_fix-LLVM-14.patch: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,902 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,903 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,903 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,903 easyblock.py:844 INFO Found file llvmlite-0.39.1_fix-LLVM-14.patch at /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch -== 2023-01-20 17:01:16,903 easyblock.py:532 INFO Fetched extension patches: [{'name': 'llvmlite-0.39.1_fix-LLVM-14.patch', 'postinstall': False, 'path': '/kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch', 'checksum': None}] -== 2023-01-20 17:01:16,904 easyblock.py:709 INFO md5 checksum for /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch: c81c8b706b1ee91d6c6158486e96b2d4 -== 2023-01-20 17:01:16,904 easyblock.py:709 INFO sha256 checksum for /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch: 39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17 -== 2023-01-20 17:01:16,904 easyblock.py:719 INFO Checksum for extension patch llvmlite-0.39.1_fix-LLVM-14.patch verified -== 2023-01-20 17:01:16,905 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scanorama-1.7.3.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,905 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,905 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,905 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:16,906 easyblock.py:844 INFO Found file scanorama-1.7.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-20 17:01:16,906 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: f0f5d506bcfe7ca8d19efa47fe9ee4fe -== 2023-01-20 17:01:16,907 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: e1d1cdd6855b3a302f6e9e3160442a9998113e5118ac48c71bf8a21760a657b7 -== 2023-01-20 17:01:16,907 easyblock.py:685 INFO Checksum for extension source scanorama-1.7.3.tar.gz verified -== 2023-01-20 17:01:16,907 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:16,907 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.2.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-20 17:01:16,907 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-20 17:01:16,908 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-20 17:01:16,908 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-20 17:01:17,395 filetools.py:821 INFO File size for https://github.com/theislab/scib-pipeline/archive/refs/tags/0.2.0.tar.gz: None -== 2023-01-20 17:01:28,805 filetools.py:828 INFO Downloaded file 0.2.0.tar.gz from url https://github.com/theislab/scib-pipeline/archive/refs/tags/0.2.0.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-20 17:01:28,805 filetools.py:860 INFO Successful download of file 0.2.0.tar.gz from url https://github.com/theislab/scib-pipeline/archive/refs/tags/0.2.0.tar.gz to path /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-20 17:01:28,809 easyblock.py:939 INFO Successfully downloaded source file 0.2.0.tar.gz from https://github.com/theislab/scib-pipeline/archive/refs/tags/0.2.0.tar.gz -== 2023-01-20 17:01:29,083 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: ed1e3a1e7b718dc7f72babd02939d635 -== 2023-01-20 17:01:29,192 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: d2700e0f9c9bc2ee2a1d96a91f05448abd7c9ccd83208da42aaac53724f2f772 -== 2023-01-20 17:01:29,192 easyblock.py:685 INFO Checksum for extension source 0.2.0.tar.gz verified -== 2023-01-20 17:01:29,193 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-20 17:01:29,193 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline'] -== 2023-01-20 17:01:29,193 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:29,274 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:29,291 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:29,302 build_log.py:267 INFO ... (took 12 secs) -== 2023-01-20 17:01:29,305 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-20 17:01:29,308 easyblock.py:3877 INFO Starting ready step -== 2023-01-20 17:01:29,308 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:29,308 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:29,308 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:29,308 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:29,308 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-20 17:01:29,321 run.py:236 INFO running cmd: ulimit -u -== 2023-01-20 17:01:29,329 easyblock.py:2196 INFO Setting parallelism: 16 -== 2023-01-20 17:01:29,382 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-20 17:01:29,383 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-20 17:01:29,383 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:01:29,386 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-20 17:01:29,387 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-20 17:01:29,387 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:29,387 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:29,387 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:29,388 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:29,388 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:01:29,390 build_log.py:267 INFO unpacking... -== 2023-01-20 17:01:29,392 easyblock.py:3877 INFO Starting source step -== 2023-01-20 17:01:29,392 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:29,393 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:29,393 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:29,393 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:29,393 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-20 17:01:29,393 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-20 17:01:29,393 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:01:29,395 build_log.py:267 INFO patching... -== 2023-01-20 17:01:29,399 easyblock.py:3877 INFO Starting patch step -== 2023-01-20 17:01:29,399 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:29,400 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:29,400 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:29,400 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:29,400 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-20 17:01:29,400 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:01:29,403 build_log.py:267 INFO preparing... -== 2023-01-20 17:01:29,406 easyblock.py:3877 INFO Starting prepare step -== 2023-01-20 17:01:29,406 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:01:29,406 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:01:29,407 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:01:29,407 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:01:29,407 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-20 17:01:29,408 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:01:29,408 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-20 17:01:29,409 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-20 17:01:29,409 modules.py:628 INFO Checking whether rpy2/3.5.7-foss-2022a exists... -== 2023-01-20 17:01:29,409 modules.py:633 INFO Module rpy2/3.5.7-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,409 modules.py:656 INFO Result for existence check of rpy2/3.5.7-foss-2022a module: True -== 2023-01-20 17:01:29,409 modules.py:628 INFO Checking whether snakemake/7.20.0-foss-2022a exists... -== 2023-01-20 17:01:29,409 modules.py:633 INFO Module snakemake/7.20.0-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,409 modules.py:656 INFO Result for existence check of snakemake/7.20.0-foss-2022a module: True -== 2023-01-20 17:01:29,409 modules.py:628 INFO Checking whether networkx/2.8.4-foss-2022a exists... -== 2023-01-20 17:01:29,409 modules.py:633 INFO Module networkx/2.8.4-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,409 modules.py:656 INFO Result for existence check of networkx/2.8.4-foss-2022a module: True -== 2023-01-20 17:01:29,409 modules.py:628 INFO Checking whether ICU/71.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:01:29,409 modules.py:633 INFO Module ICU/71.1-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-20 17:01:29,409 modules.py:656 INFO Result for existence check of ICU/71.1-GCCcore-11.3.0 module: True -== 2023-01-20 17:01:29,410 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:01:29,410 modules.py:633 INFO Module Graphviz/5.0.0-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-20 17:01:29,410 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCCcore-11.3.0 module: True -== 2023-01-20 17:01:29,410 modules.py:628 INFO Checking whether GSL/2.7-GCC-11.3.0 exists... -== 2023-01-20 17:01:29,410 modules.py:633 INFO Module GSL/2.7-GCC-11.3.0 exists (found in list of available modules) -== 2023-01-20 17:01:29,410 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-11.3.0 module: True -== 2023-01-20 17:01:29,410 modules.py:628 INFO Checking whether R/4.2.1-foss-2022a exists... -== 2023-01-20 17:01:29,410 modules.py:633 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,410 modules.py:656 INFO Result for existence check of R/4.2.1-foss-2022a module: True -== 2023-01-20 17:01:29,410 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists... -== 2023-01-20 17:01:29,410 modules.py:633 INFO Module R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists (found in list of available modules) -== 2023-01-20 17:01:29,410 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 module: True -== 2023-01-20 17:01:29,410 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-20 17:01:29,410 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,411 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-20 17:01:29,411 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-20 17:01:29,411 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,411 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-20 17:01:29,411 modules.py:628 INFO Checking whether numba/0.56.4-foss-2022a exists... -== 2023-01-20 17:01:29,411 modules.py:633 INFO Module numba/0.56.4-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,411 modules.py:656 INFO Result for existence check of numba/0.56.4-foss-2022a module: True -== 2023-01-20 17:01:29,411 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-20 17:01:29,411 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,411 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-20 17:01:29,411 modules.py:628 INFO Checking whether h5py/3.7.0-foss-2022a exists... -== 2023-01-20 17:01:29,411 modules.py:633 INFO Module h5py/3.7.0-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,411 modules.py:656 INFO Result for existence check of h5py/3.7.0-foss-2022a module: True -== 2023-01-20 17:01:29,412 modules.py:628 INFO Checking whether scikit-learn/1.1.2-foss-2022a exists... -== 2023-01-20 17:01:29,412 modules.py:633 INFO Module scikit-learn/1.1.2-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,412 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-foss-2022a module: True -== 2023-01-20 17:01:29,412 modules.py:628 INFO Checking whether scikit-misc/0.1.4-foss-2022a exists... -== 2023-01-20 17:01:29,412 modules.py:633 INFO Module scikit-misc/0.1.4-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,412 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-foss-2022a module: True -== 2023-01-20 17:01:29,412 modules.py:628 INFO Checking whether leidenalg/0.9.1-foss-2022a exists... -== 2023-01-20 17:01:29,412 modules.py:633 INFO Module leidenalg/0.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,412 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-foss-2022a module: True -== 2023-01-20 17:01:29,412 modules.py:628 INFO Checking whether umap-learn/0.5.3-foss-2022a exists... -== 2023-01-20 17:01:29,412 modules.py:633 INFO Module umap-learn/0.5.3-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,412 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-foss-2022a module: True -== 2023-01-20 17:01:29,413 modules.py:628 INFO Checking whether pydot/1.4.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:01:29,413 modules.py:633 INFO Module pydot/1.4.2-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-20 17:01:29,413 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCCcore-11.3.0 module: True -== 2023-01-20 17:01:29,413 modules.py:628 INFO Checking whether igraph/0.10.3-foss-2022a exists... -== 2023-01-20 17:01:29,413 modules.py:633 INFO Module igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,413 modules.py:656 INFO Result for existence check of igraph/0.10.3-foss-2022a module: True -== 2023-01-20 17:01:29,413 modules.py:628 INFO Checking whether python-igraph/0.10.3-foss-2022a exists... -== 2023-01-20 17:01:29,413 modules.py:633 INFO Module python-igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,413 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-foss-2022a module: True -== 2023-01-20 17:01:29,413 modules.py:628 INFO Checking whether Deprecated/1.2.13-foss-2022a exists... -== 2023-01-20 17:01:29,413 modules.py:633 INFO Module Deprecated/1.2.13-foss-2022a exists (found in list of available modules) -== 2023-01-20 17:01:29,413 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-foss-2022a module: True -== 2023-01-20 17:01:29,414 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-20 17:01:29,414 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-20 17:01:29,963 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-20 17:01:31,785 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-20 17:01:34,767 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-20 17:01:36,323 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib') -== 2023-01-20 17:01:39,136 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib') -== 2023-01-20 17:01:40,989 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-20 17:01:42,541 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib') -== 2023-01-20 17:01:44,186 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-20 17:01:45,961 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-1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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib') -== 2023-01-20 17:01:47,594 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-1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(previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-20 17:01:49,337 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib') -== 2023-01-20 17:01:53,487 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib') -== 2023-01-20 17:02:07,012 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/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(previous value: '/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib') -== 2023-01-20 17:02:11,009 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-20 17:02:11,009 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-20 17:02:11,009 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-20 17:02:11,011 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-20 17:02:11,013 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-20 17:02:11,030 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-20 17:02:11,035 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/include was not found -== 2023-01-20 17:02:11,036 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/include was not found -== 2023-01-20 17:02:11,038 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/include was not found -== 2023-01-20 17:02:11,048 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/include was not found -== 2023-01-20 17:02:11,050 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/include was not found -== 2023-01-20 17:02:11,050 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib64 was not found -== 2023-01-20 17:02:11,051 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib was not found -== 2023-01-20 17:02:11,051 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-20 17:02:11,052 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-20 17:02:11,054 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/include was not found -== 2023-01-20 17:02:11,056 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-20 17:02:11,058 variables.py:203 WARNING flags_for_subdirs: directory 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/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/include was not found -== 2023-01-20 17:02:11,077 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/include was not found -== 2023-01-20 17:02:11,089 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,089 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,089 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,090 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,091 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-20 17:02:11,092 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,093 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,094 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,095 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-20 17:02:11,099 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,100 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 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-L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-20 17:02:11,101 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,102 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-20 17:02:11,103 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,104 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-20 17:02:11,105 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-20 17:02:11,106 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,107 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:11,109 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/ as start dir -== 2023-01-20 17:02:11,111 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-20 17:02:11,112 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-20 17:02:15,169 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-20 17:02:15,680 build_log.py:267 INFO ... (took 46 secs) -== 2023-01-20 17:02:15,683 build_log.py:267 INFO configuring... -== 2023-01-20 17:02:15,685 easyblock.py:3877 INFO Starting configure step -== 2023-01-20 17:02:15,685 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:15,685 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:15,685 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:15,685 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:15,686 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-20 17:02:15,686 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:02:15,688 build_log.py:267 INFO building... -== 2023-01-20 17:02:15,691 easyblock.py:3877 INFO Starting build step -== 2023-01-20 17:02:15,691 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:15,691 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:15,691 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:15,691 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:15,692 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-20 17:02:15,692 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:02:15,695 build_log.py:267 INFO testing... -== 2023-01-20 17:02:15,698 easyblock.py:3877 INFO Starting test step -== 2023-01-20 17:02:15,698 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:15,698 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:15,698 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:15,699 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:15,699 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-20 17:02:15,699 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:02:15,701 build_log.py:267 INFO installing... -== 2023-01-20 17:02:15,703 easyblock.py:3877 INFO Starting install step -== 2023-01-20 17:02:15,703 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:15,704 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:15,704 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:15,704 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:15,704 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-20 17:02:15,704 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-20 17:02:15,704 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-20 17:02:15,705 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a successfully removed. -== 2023-01-20 17:02:15,705 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-20 17:02:15,705 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:02:15,705 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-20 17:02:15,705 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-20 17:02:15,708 build_log.py:267 INFO taking care of extensions... -== 2023-01-20 17:02:15,710 easyblock.py:3877 INFO Starting extensions step -== 2023-01-20 17:02:15,710 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:15,710 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:15,711 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:15,711 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:15,711 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-20 17:02:15,711 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-20 17:02:15,711 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-20 17:02:16,676 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-20 17:02:16,676 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-ikna97d3/tmp2lp5wfu_/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:02:16,677 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-ikna97d3/tmp2lp5wfu_/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, bbknn-1.5.1, llvmlite-0.39.1, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/scib-pipeline]==]) -whatis([==[URL: https://github.com/theislab/scib-pipeline]==]) -whatis([==[Extensions: anndata-0.8.0, anndata2ri-1.1, bbknn-1.5.1, llvmlite-0.39.1, scanorama-1.7.3, scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a" - -conflict("scib-pipeline") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("rpy2/3.5.7-foss-2022a") ) then - load("rpy2/3.5.7-foss-2022a") -end - -if not ( isloaded("snakemake/7.20.0-foss-2022a") ) then - load("snakemake/7.20.0-foss-2022a") -end - -if not ( isloaded("networkx/2.8.4-foss-2022a") ) then - load("networkx/2.8.4-foss-2022a") -end - -if not ( isloaded("ICU/71.1-GCCcore-11.3.0") ) then - load("ICU/71.1-GCCcore-11.3.0") -end - -if not ( isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("R/4.2.1-foss-2022a") ) then - load("R/4.2.1-foss-2022a") -end - -if not ( isloaded("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") ) then - load("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("scikit-learn/1.1.2-foss-2022a") ) then - load("scikit-learn/1.1.2-foss-2022a") -end - -if not ( isloaded("scikit-misc/0.1.4-foss-2022a") ) then - load("scikit-misc/0.1.4-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTSCIBMINPIPELINE", "anndata-0.8.0,anndata2ri-1.1,trvaep-0.1.0,scgen-2.1.0,bbknn-1.5.1,llvmlite-0.39.1,scanorama-1.7.3,scib-pipeline-0.2.0") - -== 2023-01-20 17:02:16,677 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-== 2023-01-20 17:02:18,630 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: '/etc/modulefiles/vsc/cluster/slaking.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCCcore/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zlib/1.2.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/binutils/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCC/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/numactl/2.0.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/XZ/5.2.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxml2/2.9.13-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpciaccess/0.16-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/hwloc/2.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenSSL/1.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libevent/2.1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCX/1.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libfabric/1.15.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PMIx/4.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCC/1.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenMPI/4.1.4-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenBLAS/0.3.20-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FlexiBLAS/3.2.0-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW/3.3.10-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gompi/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW.MPI/3.3.10-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ScaLAPACK/2.2.0-gompi-2022a-fb.lua:/apps/gent/RHEL8/haswell-ib/modules/all/foss/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/bzip2/1.0.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ncurses/6.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libreadline/8.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tcl/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SQLite/3.38.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GMP/6.2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libffi/3.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Python/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/expat/2.4.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpng/1.6.37-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Brotli/1.0.9-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/freetype/2.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/util-linux/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/fontconfig/2.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/xorg-macros/1.19.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/X11/20220504-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gzip/1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lz4/1.9.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zstd/1.5.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libdrm/2.4.110-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libglvnd/1.4.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libunwind/1.6.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LLVM/14.0.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Mesa/22.0.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libGLU/9.0.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pixman/0.40.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gettext/0.21-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PCRE/8.45-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLib/2.72.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/cairo/1.17.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PCRE2/10.40-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NASM/2.15.05-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libjpeg-turbo/2.1.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/jbigkit/2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libdeflate/1.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LibTIFF/4.3.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tk/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/cURL/7.83.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NLopt/2.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libogg/1.3.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FLAC/1.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libvorbis/1.3.7-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libopus/1.3.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LAME/3.100-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libsndfile/1.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Szip/2.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HDF5/1.12.2-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UDUNITS/2.2.28-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ATK/2.38.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HarfBuzz/4.2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FriBidi/1.0.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pango/1.50.7-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GTK2/2.24.33-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Ghostscript/9.56.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/JasPer/2.0.33-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LittleCMS/2.13.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ImageMagick/7.1.0-37-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLPK/5.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/nodejs/16.15.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/netCDF/4.9.0-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GEOS/3.10.3-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/nlohmann_json/3.10.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PROJ/9.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgeotiff/1.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pybind11/2.9.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libtirpc/1.3.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HDF/4.2.15-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GDAL/3.5.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/MPFR/4.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgit2/1.4.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/OpenPGM/5.2.122-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libsodium/1.0.18-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/ZeroMQ/4.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxslt/1.1.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lxml/4.9.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/BeautifulSoup/4.10.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/IPython/8.5.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/rpy2/3.5.7-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libyaml/0.2.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyYAML/6.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DB/18.1.40-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Perl/5.34.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/git/2.36.0-GCCcore-11.3.0-nodocs.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GitPython/3.1.27-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/snakemake/7.20.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ICU/71.1-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GTS/0.7.6-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgd/2.3.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/double-conversion/3.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/graphite2/1.3.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DBus/1.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSPR/4.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSS/3.79-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/snappy/1.1.9-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qt5/5.15.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Graphviz/5.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GSL/2.7-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Java/11.0.2.lua:/apps/gent/RHEL8/haswell-ib/modules/all/R/4.2.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Boost/1.79.0-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/RapidJSON/1.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/RE2/2022-06-01-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/utf8proc/2.7.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Arrow/8.0.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/arrow-R/8.0.0-foss-2022a-R-4.2.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SciPy-bundle/2022.05-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tkinter/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow/9.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qhull/2020.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/matplotlib/3.5.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LZO/2.10-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Blosc/1.21.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-build/0.15.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTables/3.8.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/statsmodels/0.13.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tqdm/4.64.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Eigen/3.4.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/arpack-ng/3.8.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PyCairo/1.21.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libarchive/3.6.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/elfutils/0.187-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Clang/13.0.1-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-misc/0.1.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/pydot/1.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Deprecated/1.2.13-foss-2022a.lua') -== 2023-01-20 17:02:18,640 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-ikna97d3/tmp2lp5wfu_/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/zen2-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-20 17:02:24,114 easyblock.py:2838 INFO Installing extensions -== 2023-01-20 17:02:24,118 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:24,122 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:24,122 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:24,122 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:24,122 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:24,125 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:24,125 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:24,125 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:24,127 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:24,127 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:24,128 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:24,129 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:24,129 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:24,129 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:24,129 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:24,130 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:24,131 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:24,133 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:24,133 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:24,133 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,123 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,125 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,126 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,126 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,126 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,127 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,127 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,128 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,129 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,129 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,129 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,130 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,130 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,131 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,131 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,131 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,131 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,132 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,133 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,134 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,134 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,134 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,135 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,135 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,135 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,136 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,137 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,137 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,138 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,139 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,140 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,140 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,140 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,141 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,141 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,141 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,142 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,142 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,142 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,143 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,143 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,143 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,144 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,144 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,144 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,144 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,144 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,144 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,145 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,145 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,146 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,146 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,146 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,147 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,147 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,147 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,148 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,148 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,148 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,149 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,149 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,150 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,150 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,151 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,152 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,152 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,153 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,153 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,153 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,154 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,154 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,154 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,156 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,156 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,156 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,156 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,156 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,157 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,158 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,158 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,159 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,159 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,159 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,160 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,160 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,160 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,161 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,161 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,161 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,162 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,163 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,163 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,164 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,164 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,164 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,165 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,165 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,165 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,165 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,166 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,166 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,167 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,167 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,167 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,167 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,168 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,169 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,169 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,170 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,170 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,170 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,171 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,171 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,171 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,172 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,173 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,173 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,175 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,175 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,177 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,177 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,178 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,178 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,179 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,180 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,180 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,180 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,181 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,181 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,181 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,182 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,182 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,183 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,183 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,184 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,184 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,184 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,185 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,185 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,185 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,186 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,186 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,186 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,187 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,187 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,188 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,188 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,189 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,189 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,189 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,190 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,190 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,190 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,191 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,191 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,191 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,192 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,193 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,194 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,194 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,195 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,195 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,195 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,196 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,197 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,197 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,198 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,198 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,198 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,199 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,199 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,201 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,201 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,202 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,202 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,202 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,203 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,203 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,203 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,204 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,204 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,205 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,205 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,206 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,206 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,207 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,207 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,208 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,208 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,208 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,209 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,209 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,209 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,209 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,210 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,210 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,211 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,211 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,212 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,212 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,212 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,214 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,214 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,214 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,215 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,215 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,215 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,216 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,217 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,218 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,218 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,219 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,219 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,219 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,220 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,221 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,221 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,222 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,222 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,222 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,223 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,224 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,225 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,225 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,225 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,225 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,225 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,225 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,225 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,226 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,226 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,226 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,226 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,226 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,226 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,227 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,227 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,227 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,228 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,228 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,228 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,228 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,228 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,228 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,228 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,229 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,229 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,229 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,230 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,230 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,230 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,230 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,230 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,230 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,231 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,231 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,231 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,231 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,231 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,231 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,231 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,232 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,232 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,232 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,232 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,232 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,233 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,233 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,233 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,233 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,234 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,234 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,234 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,234 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,235 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,235 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,235 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,235 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,235 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,236 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,237 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,237 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,237 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,237 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,237 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,238 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,238 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,238 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,238 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,238 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,239 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,239 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,240 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,240 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,240 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,241 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,241 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,241 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,241 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,241 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,242 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,242 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,242 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,242 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,242 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,243 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,246 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata' -== 2023-01-20 17:02:26,246 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,246 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previously undefined) -== 2023-01-20 17:02:26,246 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,246 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,248 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,249 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,249 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,249 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,249 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,250 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,251 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,251 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,252 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,252 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,252 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,253 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,253 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,254 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,254 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,254 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,254 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,254 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,256 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,256 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,256 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,258 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,258 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,258 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,259 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,259 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,259 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,259 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,259 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,260 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,260 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,260 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,260 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,261 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,261 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,261 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,261 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,262 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,262 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,263 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,263 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,263 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,263 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,264 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,264 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,264 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,264 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,264 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,265 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,265 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,266 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,266 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,267 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,267 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,267 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,267 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,267 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,267 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,267 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,268 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,268 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,268 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,269 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,269 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,270 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,270 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,270 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,270 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,270 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,270 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,270 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,270 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,271 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,271 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,271 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,271 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,271 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,272 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,272 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,272 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,272 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,273 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,273 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,273 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,273 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,273 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,273 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,273 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,274 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,274 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,274 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,274 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,274 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,274 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,275 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,275 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,275 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,276 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,276 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,276 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,276 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,276 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,276 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,276 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,277 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,277 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,277 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,277 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,277 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,278 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,278 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,279 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,279 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,279 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,279 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,280 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,280 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,280 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,280 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,280 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,281 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,281 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,281 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,281 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,281 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,282 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,282 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,283 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,283 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,283 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,283 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,284 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,284 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,284 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,284 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,284 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,285 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,285 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,285 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,285 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,286 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,286 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,287 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,287 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,287 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,287 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,287 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,287 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,288 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,288 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,288 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,288 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,288 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,289 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,289 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,289 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,289 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,290 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,290 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,290 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,290 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,293 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,294 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,294 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,294 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,294 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,295 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,295 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,296 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,296 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,296 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,296 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,296 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,296 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,296 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,297 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,297 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,297 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,297 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,298 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,298 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,298 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,298 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,299 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,299 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,299 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,299 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,299 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,300 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,300 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,300 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,300 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,301 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,301 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,302 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,302 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,302 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,302 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,303 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,303 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,303 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,303 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,303 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,304 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,305 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,305 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,306 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,306 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,306 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,307 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,307 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,307 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,307 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,307 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,308 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,308 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,308 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,308 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,308 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,309 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,309 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,309 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,309 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,310 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,310 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,310 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,310 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,310 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,310 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,310 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,311 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,311 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,312 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,312 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,312 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,312 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,312 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,312 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,312 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,313 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,313 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,313 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,313 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,313 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,313 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,313 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,314 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,314 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,314 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,314 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,315 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,315 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,315 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,315 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,315 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,316 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,316 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,316 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,316 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,316 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,316 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,316 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,316 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,317 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,317 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,318 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,318 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,318 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,318 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,318 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,318 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,319 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,319 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,319 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,319 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,319 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,320 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,320 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,320 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,320 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,320 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,321 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,321 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,321 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,321 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,321 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,321 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,321 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,322 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,323 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,323 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,323 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,324 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,324 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,324 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,324 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,324 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,324 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,324 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,325 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,325 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,325 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,326 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,326 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,326 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,326 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,326 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,326 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,327 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,327 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,327 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,327 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,327 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,327 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,327 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,328 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,328 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,329 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,329 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,329 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,329 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,329 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,329 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,329 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,330 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,330 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,330 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,331 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,331 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,333 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata2ri' -== 2023-01-20 17:02:26,333 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,333 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,333 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,334 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,335 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,336 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,336 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,336 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,336 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,337 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,338 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,338 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,339 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,339 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,339 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,340 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,340 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,340 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,340 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,340 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,340 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,341 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,341 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,343 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,343 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,343 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,344 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,345 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,345 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,345 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,345 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,345 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,345 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,345 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,346 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,346 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,346 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,346 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,347 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,347 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,348 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,348 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,348 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,348 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,348 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,348 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,349 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,349 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,349 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,349 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,349 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,349 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,350 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,350 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,350 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,350 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,351 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,351 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,351 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,351 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,351 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,352 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,352 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,352 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,352 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,352 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,352 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,352 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,353 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,354 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,354 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,354 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,355 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,355 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,355 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,355 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,355 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,355 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,355 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,356 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,356 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,356 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,357 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,357 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,357 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,358 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,358 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,358 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,358 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,358 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,359 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,359 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,359 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,359 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,359 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,360 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,361 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,361 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,362 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,362 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,362 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,362 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,362 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,362 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,363 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,363 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,363 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,363 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,363 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,363 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,363 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,364 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,364 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,365 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,365 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,365 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,365 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,365 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,365 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,365 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,366 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,366 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,366 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,366 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,366 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,366 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,366 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,367 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,367 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,367 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,368 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,368 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,368 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,368 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,368 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,368 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,369 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,369 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,369 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,369 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,369 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,370 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,370 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,370 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,370 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,370 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,371 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,371 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,371 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,371 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,371 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,371 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,372 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,372 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,373 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,373 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,373 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,373 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,373 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,374 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,374 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,374 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,374 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,374 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,374 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,375 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,375 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,376 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,376 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,376 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,377 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,377 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,377 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,377 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,377 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,378 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,378 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,378 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,378 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,378 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,380 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,380 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,380 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,380 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,380 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,381 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,381 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,381 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,381 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,381 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,382 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,382 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,382 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,383 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,383 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,383 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,384 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,384 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,384 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,384 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,384 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,384 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,384 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,384 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,385 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,385 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,386 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,386 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,387 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,387 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,387 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,387 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,387 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,387 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,387 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,388 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,388 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,388 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,388 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,389 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,389 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,389 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,389 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,389 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,390 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,390 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,390 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,390 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,390 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,390 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,390 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,390 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,391 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,391 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,392 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,392 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,392 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,392 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,392 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,392 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,393 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,393 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,393 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,393 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,394 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,395 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,395 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,395 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,396 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,396 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,396 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,396 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,396 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,397 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,397 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,397 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,397 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,397 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,399 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,399 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,399 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,399 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,399 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,400 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,400 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,400 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,400 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,400 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,400 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,401 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,401 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,402 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,402 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,402 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,403 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,403 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,403 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,403 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,403 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,404 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,404 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,404 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,404 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,405 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,405 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,405 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,406 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,406 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,406 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,406 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,406 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,406 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,407 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,407 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,407 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,407 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,407 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,407 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,407 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,408 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,408 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,409 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,409 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,409 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,409 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,409 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,409 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,409 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,410 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,410 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,410 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,410 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,411 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,411 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,411 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,411 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,411 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,412 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,412 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,412 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,412 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,412 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,412 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,412 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,412 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,413 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,413 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,413 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,413 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,413 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,415 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-20 17:02:26,415 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,416 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,416 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,416 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,418 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,419 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,419 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,419 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,419 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,421 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,421 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,422 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,423 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,423 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,423 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,424 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,425 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,426 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,426 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,426 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,426 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,427 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,427 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,427 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,429 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,429 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,429 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,429 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,429 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,429 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,430 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,430 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,430 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,430 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,430 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,430 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,430 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,430 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,431 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,431 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,431 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,432 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,432 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,432 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,432 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,432 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,432 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,433 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,433 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,433 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,433 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,433 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,433 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,433 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,434 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,434 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,434 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,434 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,434 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,435 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,435 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,435 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,435 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,435 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,436 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,436 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,436 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,436 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,436 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,436 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,437 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,438 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,438 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,439 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,439 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,439 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,440 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,440 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,440 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,440 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,440 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,441 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,441 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,441 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,441 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,441 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,442 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,442 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,443 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,443 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,443 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,443 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,444 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,444 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,444 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,444 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,444 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,445 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,445 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,447 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,447 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,447 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,447 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,447 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,447 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,447 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,448 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,448 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,448 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,448 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,448 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,448 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,448 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,449 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,449 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,449 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,450 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,450 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,450 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,450 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,450 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,450 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,450 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,451 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,451 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,451 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,451 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,451 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,451 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,451 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,452 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,453 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,453 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,453 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,453 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,453 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,453 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,453 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,453 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,454 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,454 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,454 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,454 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,454 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,455 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,455 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,455 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,456 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,456 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,456 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,456 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,456 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,456 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,456 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,457 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,457 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,457 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,458 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,458 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,458 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,458 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,458 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,458 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,459 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,459 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,459 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,459 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,459 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,460 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,460 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,461 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,461 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,461 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,462 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,462 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,462 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,462 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,462 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,463 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,463 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,463 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,463 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,463 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,464 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,465 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,465 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,465 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,465 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,465 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,466 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,466 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,466 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,466 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,466 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,467 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,467 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,468 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,468 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,468 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,469 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,469 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,469 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,469 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,469 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,469 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,469 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,470 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,470 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,470 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,471 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,471 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,472 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,472 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,472 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,472 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,472 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,472 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,473 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,473 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,473 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,473 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,473 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,474 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,474 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,474 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,474 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,474 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,475 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,475 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,475 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,475 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,475 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,475 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,476 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,476 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,476 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,477 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,477 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,477 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,477 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,477 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,477 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,477 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,478 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,478 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,478 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,478 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,479 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,479 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,479 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,480 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,480 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,480 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,480 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,480 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,481 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,481 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,481 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,481 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,482 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,482 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,482 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,482 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,483 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,483 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,484 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,484 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,484 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,484 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,484 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,485 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,485 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,485 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,485 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,485 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,486 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,487 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,487 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,487 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,487 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,487 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,488 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,488 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,488 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,488 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,488 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,489 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,489 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,489 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,489 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,489 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,490 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,490 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,490 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,491 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,491 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,491 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,491 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,491 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,492 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,492 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,492 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,492 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,492 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,492 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,492 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,492 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,493 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,493 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,494 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,494 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,494 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,494 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,494 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,494 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,495 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,495 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,495 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,495 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,495 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,496 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,496 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,496 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,496 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,496 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,497 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,497 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,497 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,497 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,497 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,497 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,498 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,498 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,500 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scgen' -== 2023-01-20 17:02:26,501 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,501 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,501 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,501 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,503 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,504 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,504 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,504 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,504 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,505 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,505 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,505 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,506 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,506 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,507 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,507 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,507 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,508 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,509 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,510 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,510 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,510 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,511 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,511 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,512 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,512 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,512 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,512 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,512 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,512 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,512 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,513 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,513 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,513 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,513 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,513 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,513 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,513 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,514 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,514 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,515 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,515 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,515 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,515 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,515 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,515 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,515 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,516 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,516 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,516 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,516 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,517 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,517 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,518 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,518 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,518 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,518 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,518 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,518 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,519 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,519 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,519 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,519 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,519 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,519 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,520 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,520 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,520 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,520 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,521 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,521 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,521 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,521 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,521 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,522 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,522 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,522 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,522 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,522 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,522 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,522 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,523 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,523 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,523 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,524 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,524 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,524 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,524 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,524 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,524 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,524 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,525 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,525 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,525 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,525 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,525 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,525 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,525 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,526 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,526 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,526 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,527 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,527 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,527 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,527 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,527 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,527 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,528 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,528 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,528 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,528 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,529 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,529 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,530 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,530 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,530 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,530 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,530 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,530 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,530 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,531 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,531 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,531 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,531 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,532 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,532 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,532 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,533 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,533 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,533 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,533 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,533 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,533 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,534 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,534 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,534 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,534 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,534 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,535 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,535 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,535 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,535 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,536 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,536 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,536 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,536 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,536 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,536 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,536 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,537 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,537 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,538 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,538 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,538 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,538 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,538 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,538 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,538 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,538 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,539 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,539 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,539 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,539 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,539 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,540 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,540 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,540 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,541 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,541 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,541 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,541 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,541 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,541 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,541 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,541 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,542 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,542 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,543 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,543 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,543 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,543 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,543 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,547 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,547 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,547 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,547 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,548 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,548 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,548 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,548 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,549 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,549 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,549 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,549 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,550 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,550 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,550 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,550 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,550 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,550 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,550 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,551 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,551 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,552 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,552 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,553 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,553 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,553 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,553 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,553 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,553 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,553 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,554 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,554 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,554 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,554 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,555 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,555 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,555 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,556 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,556 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,556 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,556 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,556 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,557 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,557 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,557 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,557 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,557 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,558 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,558 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,559 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,559 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,559 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,560 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,560 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,560 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,560 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,560 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,560 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,561 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,561 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,563 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,563 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,563 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,563 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,563 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,563 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,564 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,564 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,564 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,564 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,564 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,564 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,564 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,565 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,565 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,566 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,566 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,566 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,566 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,566 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,566 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,567 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,567 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,567 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,567 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,567 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,568 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,568 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,568 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,568 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,568 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,569 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,569 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,569 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,569 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,569 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,569 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,570 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,570 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,571 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,571 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,572 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,572 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,572 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,572 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,572 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,572 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,572 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,573 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,573 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,573 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,573 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,574 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,574 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,574 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,574 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,574 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,575 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,575 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,575 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,575 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,575 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,575 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,576 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,576 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,577 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,577 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,577 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,577 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,577 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,577 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,577 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,578 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,578 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,578 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,578 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,578 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,578 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,578 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,579 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,582 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'bbknn' -== 2023-01-20 17:02:26,582 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,582 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,582 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,582 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,584 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,585 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,585 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,585 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,585 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,586 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,586 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,587 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,587 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,587 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,588 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,588 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,589 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,590 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,590 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,591 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,591 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,591 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,593 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,593 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,593 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,593 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,593 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,593 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,594 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,594 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,594 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,594 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,594 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,594 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,594 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,595 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,596 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,596 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,596 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,596 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,596 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,597 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,597 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,597 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,597 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,597 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,597 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,597 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,598 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,599 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,599 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,599 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,600 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,600 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,600 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,600 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,600 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,600 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,600 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,601 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,601 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,601 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,601 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,601 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,601 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,601 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,601 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,602 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,602 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,603 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,603 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,603 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,603 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,603 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,603 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,604 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,604 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,604 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,604 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,604 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,605 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,605 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,605 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,605 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,605 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,606 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,606 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,606 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,606 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,606 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,606 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,606 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,607 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,607 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,607 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,607 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,607 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,608 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,608 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,608 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,608 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,609 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,609 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,609 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,609 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,609 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,609 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,609 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,610 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,610 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,611 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,611 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,611 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,612 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,612 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,612 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,612 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,612 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,612 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,612 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,612 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,613 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,613 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,613 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,613 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,613 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,614 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,614 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,614 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,614 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,615 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,615 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,615 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,615 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,615 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,615 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,615 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,616 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,616 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,617 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,617 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,617 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,617 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,617 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,617 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,617 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,618 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,618 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,618 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,618 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,618 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,618 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,619 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,619 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,619 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,620 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,620 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,620 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,620 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,620 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,620 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,620 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,621 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,621 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,621 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,622 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,622 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,622 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,622 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,622 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,622 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,623 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,623 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,623 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,623 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,623 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,623 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,623 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,624 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,624 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,625 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,625 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,625 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,625 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,625 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,625 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,625 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,626 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,626 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,626 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,626 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,627 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,627 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,627 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,627 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,627 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,628 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,628 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,628 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,628 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,628 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,628 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,628 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,629 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,630 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,631 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,631 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,631 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,631 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,631 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,632 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,632 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,632 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,632 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,632 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,632 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,633 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,633 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,634 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,634 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,634 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,634 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,634 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,634 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,634 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,635 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,635 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,635 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,635 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,635 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,636 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,636 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,636 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,636 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,637 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,637 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,637 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,637 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,637 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,637 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,637 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,638 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,638 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,639 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,639 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,639 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,640 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,640 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,640 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,640 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,640 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,640 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,641 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,641 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,641 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,641 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,642 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,642 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,642 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,642 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,642 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,643 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,643 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,643 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,643 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,643 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,643 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,644 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,644 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,645 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,645 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,645 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,646 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,646 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,646 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,646 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,646 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,647 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,647 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,647 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,647 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,647 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,648 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,650 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,650 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,650 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,650 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,650 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,651 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,651 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,651 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,651 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,651 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,651 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,652 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,652 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,653 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,653 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,653 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,653 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,653 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,654 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,654 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,654 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,654 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,654 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,654 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,655 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,655 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,655 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,656 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,656 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,656 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,656 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,656 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,656 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,656 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,657 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,657 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,657 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,657 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,658 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,658 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,658 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,660 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'llvmlite' -== 2023-01-20 17:02:26,660 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,660 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,660 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,660 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,662 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,663 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,663 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,663 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,663 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,664 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,665 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,665 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,666 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,666 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,667 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,667 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,668 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,669 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,669 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,669 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,669 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,669 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,671 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,671 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,671 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,673 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,673 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,673 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,674 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,674 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,674 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,674 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,674 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,674 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,674 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,675 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,675 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,675 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,676 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,676 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,677 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,677 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,677 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,677 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,677 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,677 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,677 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,678 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,678 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,678 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,679 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,680 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,680 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,680 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,680 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,680 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,680 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,680 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,680 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,681 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,681 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,681 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,681 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,681 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,681 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,681 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,682 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,682 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,682 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,683 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,683 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,683 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,683 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,683 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,683 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,684 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,684 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,684 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,684 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,684 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,684 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,684 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,685 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,685 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,686 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,686 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,686 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,686 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,686 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,686 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,687 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,687 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,687 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,687 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,688 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,689 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,690 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,690 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,690 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,690 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,690 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,691 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,691 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,691 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,691 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,691 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,692 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,693 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,694 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,694 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,694 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,694 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,694 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,695 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,695 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,695 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,695 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,696 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,696 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,696 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,696 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,697 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,697 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,698 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,698 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,698 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,698 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,698 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,698 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,698 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,699 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,699 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,699 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,699 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,700 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,700 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,700 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,701 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,701 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,701 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,701 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,701 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,702 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,702 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,703 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,703 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,703 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,703 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,703 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,703 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,703 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,704 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,704 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,704 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,704 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,705 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,705 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,705 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,705 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,705 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,706 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,706 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,706 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,706 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,706 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,706 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,707 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,707 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,708 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,708 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,708 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,708 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,709 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,709 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,709 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,709 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,709 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,710 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,710 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,710 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,710 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,711 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,711 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,712 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,712 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,712 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,712 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,712 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,713 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,713 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,713 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,713 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,713 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,714 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,714 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,714 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,714 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,714 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,714 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,716 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,716 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,716 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,716 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,716 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,717 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,717 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,717 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,717 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,717 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,717 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,718 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,718 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,718 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,719 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,719 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,719 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,719 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,719 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,719 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,719 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,720 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,720 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,720 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,720 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,720 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,721 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,721 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,721 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,721 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,722 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,722 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,722 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,722 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,722 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,722 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,722 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,723 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,723 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,724 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,724 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,725 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,725 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,725 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,725 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,725 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,725 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,725 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,726 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,726 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,726 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,726 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,727 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,727 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,727 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,727 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,727 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,728 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,728 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,728 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,728 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,728 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,728 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,728 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,728 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,730 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,730 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,730 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,730 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,730 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,731 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,731 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,731 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,731 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,731 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,731 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,732 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,732 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,732 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,732 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,733 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,734 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,734 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,734 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,735 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,735 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,735 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,735 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,735 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,736 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,736 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,736 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,736 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,736 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,738 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,738 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,738 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,738 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,738 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,738 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,739 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,739 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,739 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,739 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,739 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,739 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,739 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,740 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,740 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,741 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,741 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,741 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,741 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,741 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,741 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,741 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,742 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,742 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,742 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,743 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,745 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scanorama' -== 2023-01-20 17:02:26,745 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,745 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,745 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,745 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:26,746 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-20 17:02:26,747 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-20 17:02:26,747 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-20 17:02:26,747 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-20 17:02:26,747 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-20 17:02:26,748 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-20 17:02:26,749 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-20 17:02:26,749 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-20 17:02:26,750 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-20 17:02:26,750 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-20 17:02:26,751 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-20 17:02:26,751 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-20 17:02:26,752 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-20 17:02:26,753 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-20 17:02:26,753 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-20 17:02:26,753 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-20 17:02:26,753 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-20 17:02:26,754 easyconfig.py:1688 INFO Generating template values... -== 2023-01-20 17:02:26,755 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-20 17:02:26,755 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-20 17:02:26,755 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-20 17:02:26,757 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-20 17:02:26,757 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,757 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-20 17:02:26,758 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-20 17:02:26,758 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,758 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-20 17:02:26,758 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,758 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,759 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,759 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,759 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,759 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,759 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,759 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,760 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,760 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,760 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,761 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-20 17:02:26,761 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,761 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-20 17:02:26,761 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,761 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,761 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,762 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,762 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,762 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,762 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,762 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,762 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,762 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,763 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,764 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-20 17:02:26,764 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,764 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-20 17:02:26,764 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,764 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,765 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,765 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,765 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,765 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,765 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,765 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,765 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,766 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,767 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-20 17:02:26,767 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,767 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-20 17:02:26,768 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,768 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,768 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,768 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,768 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,768 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,768 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,768 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,769 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,769 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,770 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-20 17:02:26,770 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,770 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-20 17:02:26,770 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-20 17:02:26,770 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,770 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-20 17:02:26,770 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,771 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,771 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,771 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,771 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,771 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,772 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,773 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-20 17:02:26,773 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,774 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-20 17:02:26,774 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-20 17:02:26,774 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,774 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-20 17:02:26,774 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,774 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,775 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,775 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,775 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,775 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,776 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,776 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,776 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,776 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,776 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,777 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-20 17:02:26,778 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,778 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-20 17:02:26,778 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-20 17:02:26,778 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,778 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-20 17:02:26,779 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-20 17:02:26,779 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,779 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-20 17:02:26,779 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,779 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,780 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,780 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,780 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,780 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,780 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-20 17:02:26,781 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-20 17:02:26,782 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,782 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-20 17:02:26,782 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,782 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,782 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,782 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,782 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,783 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,783 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,783 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,783 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,783 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,784 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,784 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,784 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,784 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-20 17:02:26,784 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,785 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-20 17:02:26,785 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,785 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,785 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,785 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-20 17:02:26,785 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,786 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-20 17:02:26,786 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,787 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-20 17:02:26,787 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,787 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-20 17:02:26,787 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-20 17:02:26,787 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,787 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-20 17:02:26,787 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,787 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,788 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,788 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,788 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,788 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,788 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,789 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-20 17:02:26,789 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,789 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-20 17:02:26,790 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,790 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,790 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,790 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,790 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,790 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,790 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,790 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,791 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,791 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,792 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-20 17:02:26,792 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,792 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-20 17:02:26,792 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,792 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,792 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,793 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,793 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,793 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,793 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,793 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,794 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,794 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,795 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,795 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,795 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,795 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,796 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,796 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,796 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,796 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,796 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,797 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,797 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,797 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,797 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,797 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,798 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,798 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,798 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,798 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,799 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-20 17:02:26,799 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,800 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-20 17:02:26,800 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-20 17:02:26,800 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,800 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-20 17:02:26,800 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,801 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,801 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,801 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,801 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,801 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,802 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,803 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-20 17:02:26,803 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,803 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-20 17:02:26,803 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,803 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,803 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,804 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,804 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,804 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,804 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,804 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,804 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,804 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,805 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-20 17:02:26,805 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,806 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-20 17:02:26,806 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-20 17:02:26,806 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,806 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-20 17:02:26,806 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,806 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,806 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,807 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,807 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,807 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,808 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,808 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-20 17:02:26,809 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,809 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-20 17:02:26,809 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-20 17:02:26,809 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,809 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-20 17:02:26,809 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,809 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,810 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,810 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,810 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,810 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,810 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,811 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-20 17:02:26,811 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,811 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-20 17:02:26,811 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,812 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,812 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,812 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,812 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,812 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,812 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,812 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,813 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,813 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,814 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-20 17:02:26,814 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,814 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-20 17:02:26,814 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-20 17:02:26,814 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,815 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-20 17:02:26,815 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-20 17:02:26,815 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,815 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-20 17:02:26,815 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,816 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,816 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,816 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,816 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,816 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,817 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,817 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,817 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-20 17:02:26,818 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,818 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,819 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,819 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,825 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,825 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,825 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,825 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,826 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,826 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,826 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,826 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,826 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,828 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-20 17:02:26,828 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,828 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-20 17:02:26,828 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-20 17:02:26,828 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,828 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-20 17:02:26,829 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,829 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,829 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,829 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,829 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,829 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,829 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,830 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-20 17:02:26,830 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,831 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-20 17:02:26,831 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-20 17:02:26,831 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,831 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-20 17:02:26,831 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-20 17:02:26,832 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,832 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-20 17:02:26,832 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-20 17:02:26,832 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-20 17:02:26,832 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-20 17:02:26,832 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,833 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,833 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,833 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,833 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-20 17:02:26,833 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-20 17:02:26,835 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scib_pipeline' -== 2023-01-20 17:02:26,836 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-20 17:02:26,836 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-ikna97d3 (previous value: '/tmp/vsc43810/eb-ikna97d3') -== 2023-01-20 17:02:26,836 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-ikna97d3 as pip cache directory -== 2023-01-20 17:02:26,836 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-20 17:02:27,765 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-20 17:02:27,766 easyblock.py:1852 INFO Starting extension anndata -== 2023-01-20 17:02:27,766 build_log.py:267 INFO installing extension anndata 0.8.0 (1/8)... -== 2023-01-20 17:02:28,710 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-20 17:02:28,710 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-20 17:02:30,606 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-20 17:02:30,608 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-20 17:02:30,609 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-20 17:02:30,620 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,625 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,626 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,627 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,628 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-20 17:02:30,628 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-20 17:02:30,628 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,628 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,633 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,633 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,633 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,634 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,635 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:30,636 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,637 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,638 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,639 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:30,640 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-20 17:02:30,641 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,642 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,643 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,644 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-20 17:02:30,645 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-20 17:02:30,645 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-20 17:02:30,645 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-20 17:02:31,162 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-20 17:02:31,684 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:02:31,689 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-20 17:02:31,854 build_log.py:267 INFO configuring... -== 2023-01-20 17:02:31,857 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-20 17:02:31,857 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-20 17:02:31,934 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-20 17:02:31,935 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-20 17:02:31,935 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-20 17:02:32,050 build_log.py:267 INFO building... -== 2023-01-20 17:02:32,055 build_log.py:267 INFO testing... -== 2023-01-20 17:02:32,058 build_log.py:267 INFO installing... -== 2023-01-20 17:02:32,062 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:02:32,063 environment.py:93 INFO Environment variable PYTHONPATH set to 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(previous value: 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-== 2023-01-20 17:02:32,064 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-20 17:02:32,064 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-20 17:02:32,064 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-20 17:02:36,507 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-20 17:02:36,507 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-20 17:02:36,511 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-20 17:02:41,302 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata/anndata-0.8.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata - Building wheel for anndata (pyproject.toml): started - Building wheel for anndata (pyproject.toml): finished with status 'done' - Created wheel for anndata: filename=anndata-0.8.0-py3-none-any.whl size=96088 sha256=2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e - Stored in directory: /tmp/vsc43810/eb-ikna97d3/pip/wheels/94/11/1a/a47764057948cf4860f716a8020c41e1d6213fcb0c390ad796 -Successfully built anndata -Installing collected packages: anndata -Successfully installed anndata-0.8.0 - -== 2023-01-20 17:02:41,302 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-20 17:02:41,303 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-20 17:02:41,303 build_log.py:267 INFO ... (took 13 secs) -== 2023-01-20 17:02:41,306 easyblock.py:1852 INFO Starting extension anndata2ri -== 2023-01-20 17:02:41,306 build_log.py:267 INFO installing extension anndata2ri 1.1 (2/8)... -== 2023-01-20 17:02:42,246 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-20 17:02:42,246 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-20 17:02:42,246 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-20 17:02:42,247 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-20 17:02:42,248 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-20 17:02:42,258 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-20 17:02:42,265 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,265 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,265 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,265 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,265 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-20 17:02:42,267 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,268 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,269 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,270 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,271 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,272 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-20 17:02:42,274 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-20 17:02:42,275 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,276 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-20 17:02:42,277 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,278 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-20 17:02:42,279 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-20 17:02:42,279 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-20 17:02:42,279 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-20 17:02:42,792 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-20 17:02:43,281 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri (parents: True, set_gid: False, sticky: False) -== 2023-01-20 17:02:43,286 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-20 17:02:43,354 build_log.py:267 INFO configuring... -== 2023-01-20 17:02:43,357 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-20 17:02:43,358 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-20 17:02:43,445 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-20 17:02:43,445 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now 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b/software/gettext/0.21-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/gzip/1.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/sbin:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/sbin:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin:/usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/kyukon/home/gent/438/vsc43810/.vscode-server/bin/97dec172d3256f8ca4bfb2143f3f76b503ca0534/bin/remote-cli:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools') -== 2023-01-20 17:02:43,567 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-20 17:02:43,567 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-20 17:02:44,160 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-20 17:02:44,161 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-20 17:02:44,166 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-20 17:02:45,642 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 2 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri/anndata2ri-1.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -ERROR: Exception: -Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper - status = run_func(*args) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper - return func(self, options, args) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/commands/install.py", line 339, in run - requirement_set = resolver.resolve( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 75, in resolve - collected = self.factory.collect_root_requirements(root_reqs) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 506, in collect_root_requirements - req = self._make_requirement_from_install_req( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 468, in _make_requirement_from_install_req - cand = self._make_candidate_from_link( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link - self._link_candidate_cache[link] = LinkCandidate( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 288, in __init__ - super().__init__( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ - self.dist = self._prepare() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 227, in _prepare - dist = self._prepare_distribution() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 299, in _prepare_distribution - return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 487, in prepare_linked_requirement - return self._prepare_linked_requirement(req, parallel_builds) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 556, in _prepare_linked_requirement - dist = _get_prepared_distribution( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", line 58, in _get_prepared_distribution - abstract_dist.prepare_distribution_metadata(finder, build_isolation) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", line 47, in prepare_distribution_metadata - self.req.prepare_metadata() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/req/req_install.py", line 522, in prepare_metadata - self.metadata_directory = generate_metadata( - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", line 35, in generate_metadata - distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", line 188, in prepare_metadata_for_build_wheel - return self._call_hook('prepare_metadata_for_build_wheel', { - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", line 332, in _call_hook - raise BackendUnavailable(data.get('traceback', '')) -pip._vendor.pep517.wrappers.BackendUnavailable: Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 89, in _build_backend - obj = import_module(mod_path) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/importlib/__init__.py", line 126, in import_module - return _bootstrap._gcd_import(name[level:], package, level) - File "", line 1050, in _gcd_import - File "", line 1027, in _find_and_load - File "", line 992, in _find_and_load_unlocked - File "", line 241, in _call_with_frames_removed - File "", line 1050, in _gcd_import - File "", line 1027, in _find_and_load - File "", line 1004, in _find_and_load_unlocked -ModuleNotFoundError: No module named 'hatchling' - - (at easybuild/easybuild-framework/easybuild/tools/run.py:643 in parse_cmd_output) -== 2023-01-20 17:02:45,642 build_log.py:267 INFO ... (took 4 secs) -== 2023-01-20 17:02:45,645 build_log.py:267 INFO ... (took 29 secs) -== 2023-01-20 17:02:45,648 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-20 17:02:45,648 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock successfully removed. -== 2023-01-20 17:02:45,648 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-20 17:02:45,649 easyblock.py:4208 WARNING build failed (first 300 chars): cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 2 and -== 2023-01-20 17:02:45,649 easyblock.py:328 INFO Closing log for application name scib-pipeline version 0.2.0 diff --git a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230123.151122.yliEG.log b/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230123.151122.yliEG.log deleted file mode 100644 index bc503694..00000000 --- a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230123.151122.yliEG.log +++ /dev/null @@ -1,6970 +0,0 @@ -== 2023-01-23 15:11:22,800 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host gligar07.gastly.os. -== 2023-01-23 15:11:22,800 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-23 15:11:22,800 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-23 15:11:22,800 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-23 15:11:22,800 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:11:22,800 easyblock.py:288 INFO Init completed for application name scib-pipeline version 0.2.0 -== 2023-01-23 15:11:22,800 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-23 15:11:22,800 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/scib-pipeline'], 'options': {}} -== 2023-01-23 15:11:22,801 easyblock.py:4151 INFO Obtained application instance of for scib-pipeline (easyblock: PythonBundle) -== 2023-01-23 15:11:22,801 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:22,801 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:22,801 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:22,801 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:22,803 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-23 15:11:22,804 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-4q2r7gcu/reprod_20230123151122_3348649 (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:11:22,804 easyblock.py:4405 INFO Dumped easyconfig instance to 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easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:23,046 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-23 15:11:23,047 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-23 15:11:23,047 easyblock.py:2327 INFO no sources provided -== 2023-01-23 15:11:23,047 easyblock.py:2342 INFO no patches provided -== 2023-01-23 15:11:23,047 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata-0.8.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:23,047 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:23,047 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:23,048 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:23,085 easyblock.py:844 INFO Found file anndata-0.8.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-23 15:11:23,135 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: ef1130964bcb6c3ca3ed161b74e46a06 -== 2023-01-23 15:11:23,162 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: 94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e -== 2023-01-23 15:11:23,162 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:23,163 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:23,163 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:23,163 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:23,550 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/s/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/s/scib-pipeline/checksums.json, /apps/gent/sources/scib-pipeline/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-23 15:11:23,550 easyblock.py:685 INFO Checksum for extension source anndata-0.8.0.tar.gz verified -== 2023-01-23 15:11:23,550 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-23 15:11:23,550 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for python-dateutil-2.8.2.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:23,551 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:23,551 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:23,551 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:23,944 filetools.py:821 INFO File size for https://pypi.python.org/simple/python-dateutil: 14881 -== 2023-01-23 15:11:23,944 filetools.py:271 INFO Not showing progress bar for downloading small file (size 14881) -== 2023-01-23 15:11:23,945 filetools.py:828 INFO Downloaded file python-dateutil_urls.html from url https://pypi.python.org/simple/python-dateutil to /tmp/vsc43810/eb-4q2r7gcu/tmp6bgbcvyj/python-dateutil_urls.html -== 2023-01-23 15:11:23,946 filetools.py:860 INFO Successful download of file python-dateutil_urls.html from url https://pypi.python.org/simple/python-dateutil to path 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/data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/python-dateutil-2.8.2.tar.gz -== 2023-01-23 15:11:24,378 easyblock.py:939 INFO Successfully downloaded source file python-dateutil-2.8.2.tar.gz from https://pypi.python.org/packages/4c/c4/13b4776ea2d76c115c1d1b84579f3764ee6d57204f6be27119f13a61d0a9/python-dateutil-2.8.2.tar.gz -== 2023-01-23 15:11:24,383 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/python-dateutil-2.8.2.tar.gz: 5970010bb72452344df3d76a10281b65 -== 2023-01-23 15:11:24,384 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/python-dateutil-2.8.2.tar.gz: 0123cacc1627ae19ddf3c27a5de5bd67ee4586fbdd6440d9748f8abb483d3e86 -== 2023-01-23 15:11:24,384 easyblock.py:685 INFO Checksum for extension source python-dateutil-2.8.2.tar.gz verified -== 2023-01-23 15:11:24,384 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-23 15:11:24,384 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for click-8.1.3.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:24,384 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:24,385 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:24,385 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:24,744 filetools.py:821 INFO File size for https://pypi.python.org/simple/click: 25733 -== 2023-01-23 15:11:24,744 filetools.py:271 INFO Not showing progress bar for downloading small file (size 25733) -== 2023-01-23 15:11:24,750 filetools.py:828 INFO Downloaded file click_urls.html from url https://pypi.python.org/simple/click to /tmp/vsc43810/eb-4q2r7gcu/tmp844or5y3/click_urls.html -== 2023-01-23 15:11:24,750 filetools.py:860 INFO Successful download of file click_urls.html from url https://pypi.python.org/simple/click to path /tmp/vsc43810/eb-4q2r7gcu/tmp844or5y3/click_urls.html -== 2023-01-23 15:11:25,091 filetools.py:821 INFO File size for https://pypi.python.org/packages/59/87/84326af34517fca8c58418d148f2403df25303e02736832403587318e9e8/click-8.1.3.tar.gz: 331147 -== 2023-01-23 15:11:25,091 filetools.py:271 INFO Not showing progress bar for downloading small file (size 331147) -== 2023-01-23 15:11:25,125 filetools.py:828 INFO Downloaded file click-8.1.3.tar.gz from url https://pypi.python.org/packages/59/87/84326af34517fca8c58418d148f2403df25303e02736832403587318e9e8/click-8.1.3.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/click-8.1.3.tar.gz -== 2023-01-23 15:11:25,126 filetools.py:860 INFO Successful download of file 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verified -== 2023-01-23 15:11:25,131 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-23 15:11:25,131 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for cryptography-39.0.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:25,132 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:25,132 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:25,132 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:25,418 filetools.py:821 INFO File size for https://pypi.python.org/simple/cryptography: 619839 -== 2023-01-23 15:11:25,418 filetools.py:271 INFO Not showing progress bar for downloading small file (size 619839) -== 2023-01-23 15:11:25,484 filetools.py:828 INFO Downloaded file cryptography_urls.html from url https://pypi.python.org/simple/cryptography to /tmp/vsc43810/eb-4q2r7gcu/tmpgzemx6im/cryptography_urls.html -== 2023-01-23 15:11:25,484 filetools.py:860 INFO Successful download of file cryptography_urls.html from url https://pypi.python.org/simple/cryptography to path /tmp/vsc43810/eb-4q2r7gcu/tmpgzemx6im/cryptography_urls.html -== 2023-01-23 15:11:26,033 filetools.py:821 INFO File size for https://pypi.python.org/packages/12/e3/c46c274cf466b24e5d44df5d5cd31a31ff23e57f074a2bb30931a8c9b01a/cryptography-39.0.0.tar.gz: 603406 -== 2023-01-23 15:11:26,033 filetools.py:271 INFO Not showing progress bar for downloading small file (size 603406) -== 2023-01-23 15:11:26,093 filetools.py:828 INFO Downloaded file cryptography-39.0.0.tar.gz from url https://pypi.python.org/packages/12/e3/c46c274cf466b24e5d44df5d5cd31a31ff23e57f074a2bb30931a8c9b01a/cryptography-39.0.0.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/cryptography-39.0.0.tar.gz -== 2023-01-23 15:11:26,094 filetools.py:860 INFO Successful download of file cryptography-39.0.0.tar.gz from url https://pypi.python.org/packages/12/e3/c46c274cf466b24e5d44df5d5cd31a31ff23e57f074a2bb30931a8c9b01a/cryptography-39.0.0.tar.gz to path /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/cryptography-39.0.0.tar.gz -== 2023-01-23 15:11:26,097 easyblock.py:939 INFO Successfully downloaded source file cryptography-39.0.0.tar.gz from https://pypi.python.org/packages/12/e3/c46c274cf466b24e5d44df5d5cd31a31ff23e57f074a2bb30931a8c9b01a/cryptography-39.0.0.tar.gz -== 2023-01-23 15:11:26,110 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/cryptography-39.0.0.tar.gz: 12d0c6df42f600637a97904f84988ae2 -== 2023-01-23 15:11:26,111 easyblock.py:679 INFO sha256 checksum for 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15:11:26,889 filetools.py:828 INFO Downloaded file hatchling-1.12.2.tar.gz from url https://pypi.python.org/packages/f5/ea/3ed5a7ecdd8a8f7e84cffd3b5ec24279a09ce2694c218ff922c35c6f1a77/hatchling-1.12.2.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/hatchling-1.12.2.tar.gz -== 2023-01-23 15:11:26,890 filetools.py:860 INFO Successful download of file hatchling-1.12.2.tar.gz from url https://pypi.python.org/packages/f5/ea/3ed5a7ecdd8a8f7e84cffd3b5ec24279a09ce2694c218ff922c35c6f1a77/hatchling-1.12.2.tar.gz to path /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/hatchling-1.12.2.tar.gz -== 2023-01-23 15:11:26,894 easyblock.py:939 INFO Successfully downloaded source file hatchling-1.12.2.tar.gz from https://pypi.python.org/packages/f5/ea/3ed5a7ecdd8a8f7e84cffd3b5ec24279a09ce2694c218ff922c35c6f1a77/hatchling-1.12.2.tar.gz -== 2023-01-23 15:11:26,895 easyblock.py:679 INFO md5 checksum for 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Fetched extension patches: [] -== 2023-01-23 15:11:26,930 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:26,930 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:26,931 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:26,931 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:26,932 easyblock.py:844 INFO Found file trvaep-0.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-23 15:11:26,979 easyblock.py:679 INFO md5 checksum for 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Considering directory in which easyconfig file is located when searching for llvmlite-0.39.1_fix-LLVM-14.patch: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:27,096 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:27,096 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:27,096 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:27,096 easyblock.py:844 INFO Found file llvmlite-0.39.1_fix-LLVM-14.patch at /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/llvmlite-0.39.1_fix-LLVM-14.patch -== 2023-01-23 15:11:27,096 easyblock.py:532 INFO Fetched extension patches: [{'name': 'llvmlite-0.39.1_fix-LLVM-14.patch', 'postinstall': False, 'path': 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easyblock.py:685 INFO Checksum for extension source scanorama-1.7.3.tar.gz verified -== 2023-01-23 15:11:27,144 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-23 15:11:27,144 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.2.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-23 15:11:27,144 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-23 15:11:27,144 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-23 15:11:27,144 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-23 15:11:27,145 easyblock.py:844 INFO Found file 0.2.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-23 15:11:27,753 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: ed1e3a1e7b718dc7f72babd02939d635 -== 2023-01-23 15:11:27,979 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: d2700e0f9c9bc2ee2a1d96a91f05448abd7c9ccd83208da42aaac53724f2f772 -== 2023-01-23 15:11:27,980 easyblock.py:685 INFO Checksum for extension source 0.2.0.tar.gz verified -== 2023-01-23 15:11:27,980 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-23 15:11:27,980 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline'] -== 2023-01-23 15:11:27,989 build_log.py:267 INFO ... (took 4 secs) -== 2023-01-23 15:11:27,992 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-23 15:11:27,996 easyblock.py:3877 INFO Starting ready step -== 2023-01-23 15:11:27,996 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:27,996 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:27,996 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:27,996 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:27,997 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-23 15:11:28,012 run.py:236 INFO running cmd: ulimit -u -== 2023-01-23 15:11:28,035 easyblock.py:2196 INFO Setting parallelism: 16 -== 2023-01-23 15:11:28,217 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-23 15:11:28,217 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-23 15:11:28,218 easyblock.py:1122 INFO Found old directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-23 15:11:28,220 filetools.py:384 INFO Path /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a successfully removed. -== 2023-01-23 15:11:28,220 easyblock.py:1130 INFO Removed old directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-23 15:11:28,221 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:11:28,223 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-23 15:11:28,224 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-23 15:11:28,224 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:28,224 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:28,224 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:28,224 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:28,224 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:11:28,227 build_log.py:267 INFO unpacking... -== 2023-01-23 15:11:28,229 easyblock.py:3877 INFO Starting source step -== 2023-01-23 15:11:28,229 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:28,229 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:28,229 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:28,229 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:28,230 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-23 15:11:28,230 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-23 15:11:28,230 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:11:28,232 build_log.py:267 INFO patching... -== 2023-01-23 15:11:28,235 easyblock.py:3877 INFO Starting patch step -== 2023-01-23 15:11:28,235 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:28,235 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:28,235 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:28,236 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:28,236 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-23 15:11:28,236 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:11:28,251 build_log.py:267 INFO preparing... -== 2023-01-23 15:11:28,253 easyblock.py:3877 INFO Starting prepare step -== 2023-01-23 15:11:28,253 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:11:28,254 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:11:28,254 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:11:28,254 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:11:28,254 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-23 15:11:28,256 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:11:28,256 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-23 15:11:28,256 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-23 15:11:28,256 modules.py:628 INFO Checking whether rpy2/3.5.7-foss-2022a exists... -== 2023-01-23 15:11:28,256 modules.py:633 INFO Module rpy2/3.5.7-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,256 modules.py:656 INFO Result for existence check of rpy2/3.5.7-foss-2022a module: True -== 2023-01-23 15:11:28,256 modules.py:628 INFO Checking whether snakemake/7.20.0-foss-2022a exists... -== 2023-01-23 15:11:28,256 modules.py:633 INFO Module snakemake/7.20.0-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,256 modules.py:656 INFO Result for existence check of snakemake/7.20.0-foss-2022a module: True -== 2023-01-23 15:11:28,257 modules.py:628 INFO Checking whether networkx/2.8.4-foss-2022a exists... -== 2023-01-23 15:11:28,257 modules.py:633 INFO Module networkx/2.8.4-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,257 modules.py:656 INFO Result for existence check of networkx/2.8.4-foss-2022a module: True -== 2023-01-23 15:11:28,257 modules.py:628 INFO Checking whether ICU/71.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:11:28,257 modules.py:633 INFO Module ICU/71.1-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-23 15:11:28,257 modules.py:656 INFO Result for existence check of ICU/71.1-GCCcore-11.3.0 module: True -== 2023-01-23 15:11:28,257 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:11:28,257 modules.py:633 INFO Module Graphviz/5.0.0-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-23 15:11:28,257 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCCcore-11.3.0 module: True -== 2023-01-23 15:11:28,257 modules.py:628 INFO Checking whether GSL/2.7-GCC-11.3.0 exists... -== 2023-01-23 15:11:28,258 modules.py:633 INFO Module GSL/2.7-GCC-11.3.0 exists (found in list of available modules) -== 2023-01-23 15:11:28,258 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-11.3.0 module: True -== 2023-01-23 15:11:28,258 modules.py:628 INFO Checking whether R/4.2.1-foss-2022a exists... -== 2023-01-23 15:11:28,258 modules.py:633 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,258 modules.py:656 INFO Result for existence check of R/4.2.1-foss-2022a module: True -== 2023-01-23 15:11:28,258 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists... -== 2023-01-23 15:11:28,258 modules.py:633 INFO Module R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists (found in list of available modules) -== 2023-01-23 15:11:28,258 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 module: True -== 2023-01-23 15:11:28,258 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-23 15:11:28,258 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,259 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-23 15:11:28,259 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-23 15:11:28,259 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,259 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-23 15:11:28,259 modules.py:628 INFO Checking whether numba/0.56.4-foss-2022a exists... -== 2023-01-23 15:11:28,259 modules.py:633 INFO Module numba/0.56.4-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,259 modules.py:656 INFO Result for existence check of numba/0.56.4-foss-2022a module: True -== 2023-01-23 15:11:28,259 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-23 15:11:28,259 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,260 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-23 15:11:28,260 modules.py:628 INFO Checking whether h5py/3.7.0-foss-2022a exists... -== 2023-01-23 15:11:28,260 modules.py:633 INFO Module h5py/3.7.0-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,260 modules.py:656 INFO Result for existence check of h5py/3.7.0-foss-2022a module: True -== 2023-01-23 15:11:28,260 modules.py:628 INFO Checking whether scikit-learn/1.1.2-foss-2022a exists... -== 2023-01-23 15:11:28,260 modules.py:633 INFO Module scikit-learn/1.1.2-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,260 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-foss-2022a module: True -== 2023-01-23 15:11:28,260 modules.py:628 INFO Checking whether scikit-misc/0.1.4-foss-2022a exists... -== 2023-01-23 15:11:28,260 modules.py:633 INFO Module scikit-misc/0.1.4-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,260 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-foss-2022a module: True -== 2023-01-23 15:11:28,261 modules.py:628 INFO Checking whether leidenalg/0.9.1-foss-2022a exists... -== 2023-01-23 15:11:28,261 modules.py:633 INFO Module leidenalg/0.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,261 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-foss-2022a module: True -== 2023-01-23 15:11:28,261 modules.py:628 INFO Checking whether umap-learn/0.5.3-foss-2022a exists... -== 2023-01-23 15:11:28,261 modules.py:633 INFO Module umap-learn/0.5.3-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,261 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-foss-2022a module: True -== 2023-01-23 15:11:28,261 modules.py:628 INFO Checking whether pydot/1.4.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:11:28,261 modules.py:633 INFO Module pydot/1.4.2-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-23 15:11:28,261 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCCcore-11.3.0 module: True -== 2023-01-23 15:11:28,261 modules.py:628 INFO Checking whether igraph/0.10.3-foss-2022a exists... -== 2023-01-23 15:11:28,262 modules.py:633 INFO Module igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,262 modules.py:656 INFO Result for existence check of igraph/0.10.3-foss-2022a module: True -== 2023-01-23 15:11:28,262 modules.py:628 INFO Checking whether python-igraph/0.10.3-foss-2022a exists... -== 2023-01-23 15:11:28,262 modules.py:633 INFO Module python-igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,262 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-foss-2022a module: True -== 2023-01-23 15:11:28,262 modules.py:628 INFO Checking whether Deprecated/1.2.13-foss-2022a exists... -== 2023-01-23 15:11:28,262 modules.py:633 INFO Module Deprecated/1.2.13-foss-2022a exists (found in list of available modules) -== 2023-01-23 15:11:28,262 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-foss-2022a module: True -== 2023-01-23 15:11:28,263 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:11:28,263 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:11:29,665 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:11:35,362 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-23 15:11:46,201 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-23 15:11:49,670 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib') -== 2023-01-23 15:11:56,207 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib') -== 2023-01-23 15:12:00,962 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCC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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-23 15:12:04,123 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib') -== 2023-01-23 15:12:07,668 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-23 15:12:12,076 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-1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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib') -== 2023-01-23 15:12:16,181 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-1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(previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-23 15:12:20,519 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib') -== 2023-01-23 15:12:30,407 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib') -== 2023-01-23 15:12:59,837 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/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(previous value: '/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib') -== 2023-01-23 15:13:09,116 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:13:09,116 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:13:09,117 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:13:09,132 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-23 15:13:09,135 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-23 15:13:09,218 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-23 15:13:09,311 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/include was not found -== 2023-01-23 15:13:09,334 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/include was not found -== 2023-01-23 15:13:09,398 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/include was not found -== 2023-01-23 15:13:09,406 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/include was not found -== 2023-01-23 15:13:09,408 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/include was not found -== 2023-01-23 15:13:09,408 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib64 was not found -== 2023-01-23 15:13:09,408 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib was not found -== 2023-01-23 15:13:09,408 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-23 15:13:09,428 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-23 15:13:09,429 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/include was not found -== 2023-01-23 15:13:09,446 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-23 15:13:09,461 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/include was not found -== 2023-01-23 15:13:09,480 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/include was not found -== 2023-01-23 15:13:09,481 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/include was not found -== 2023-01-23 15:13:09,483 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/include was not found -== 2023-01-23 15:13:09,486 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/include was not found -== 2023-01-23 15:13:09,504 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/include was not found -== 2023-01-23 15:13:09,526 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/include was not found -== 2023-01-23 15:13:09,530 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,530 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,531 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-23 15:13:09,532 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,533 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,534 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,535 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,536 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,537 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 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-L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,538 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-23 15:13:09,539 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-23 15:13:09,540 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-23 15:13:09,541 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-23 15:13:09,542 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,543 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:13:09,544 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/ as start dir -== 2023-01-23 15:13:09,580 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:13:09,580 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-23 15:13:20,129 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-23 15:13:21,055 build_log.py:267 INFO ... (took 1 min 52 secs) -== 2023-01-23 15:13:21,058 build_log.py:267 INFO configuring... -== 2023-01-23 15:13:21,061 easyblock.py:3877 INFO Starting configure step -== 2023-01-23 15:13:21,061 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:21,061 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:21,061 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:21,061 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:21,062 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-23 15:13:21,062 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:13:21,064 build_log.py:267 INFO building... -== 2023-01-23 15:13:21,066 easyblock.py:3877 INFO Starting build step -== 2023-01-23 15:13:21,066 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:21,066 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:21,066 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:21,067 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:21,067 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-23 15:13:21,067 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:13:21,069 build_log.py:267 INFO testing... -== 2023-01-23 15:13:21,071 easyblock.py:3877 INFO Starting test step -== 2023-01-23 15:13:21,071 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:21,072 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:21,072 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:21,072 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:21,072 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-23 15:13:21,072 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:13:21,075 build_log.py:267 INFO installing... -== 2023-01-23 15:13:21,077 easyblock.py:3877 INFO Starting install step -== 2023-01-23 15:13:21,077 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:21,077 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:21,077 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:21,077 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:21,077 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-23 15:13:21,077 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-23 15:13:21,113 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-23 15:13:21,556 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a successfully removed. -== 2023-01-23 15:13:21,557 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-23 15:13:21,557 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:13:21,575 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-23 15:13:21,575 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-23 15:13:21,578 build_log.py:267 INFO taking care of extensions... -== 2023-01-23 15:13:21,581 easyblock.py:3877 INFO Starting extensions step -== 2023-01-23 15:13:21,581 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:21,581 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:21,582 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:21,582 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='16', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:21,582 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-23 15:13:21,582 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-23 15:13:21,582 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-23 15:13:23,840 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-23 15:13:23,840 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:13:23,841 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, bbknn-1.5.1, click-8.1.3, cryptography-39.0.0, -hatchling-1.12.2, llvmlite-0.39.1, python-dateutil-2.8.2, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/scib-pipeline]==]) -whatis([==[URL: https://github.com/theislab/scib-pipeline]==]) -whatis([==[Extensions: anndata-0.8.0, anndata2ri-1.1, bbknn-1.5.1, click-8.1.3, cryptography-39.0.0, hatchling-1.12.2, llvmlite-0.39.1, python-dateutil-2.8.2, scanorama-1.7.3, scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a" - -conflict("scib-pipeline") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("rpy2/3.5.7-foss-2022a") ) then - load("rpy2/3.5.7-foss-2022a") -end - -if not ( isloaded("snakemake/7.20.0-foss-2022a") ) then - load("snakemake/7.20.0-foss-2022a") -end - -if not ( isloaded("networkx/2.8.4-foss-2022a") ) then - load("networkx/2.8.4-foss-2022a") -end - -if not ( isloaded("ICU/71.1-GCCcore-11.3.0") ) then - load("ICU/71.1-GCCcore-11.3.0") -end - -if not ( isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("R/4.2.1-foss-2022a") ) then - load("R/4.2.1-foss-2022a") -end - -if not ( isloaded("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") ) then - load("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("scikit-learn/1.1.2-foss-2022a") ) then - load("scikit-learn/1.1.2-foss-2022a") -end - -if not ( isloaded("scikit-misc/0.1.4-foss-2022a") ) then - load("scikit-misc/0.1.4-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTSCIBMINPIPELINE", "anndata-0.8.0,python-dateutil-2.8.2,click-8.1.3,cryptography-39.0.0,hatchling-1.12.2,anndata2ri-1.1,trvaep-0.1.0,scgen-2.1.0,bbknn-1.5.1,llvmlite-0.39.1,scanorama-1.7.3,scib-pipeline-0.2.0") - -== 2023-01-23 15:13:23,860 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/vis/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:13:23,860 easyblock.py:3724 INFO Skipping devel module... -== 2023-01-23 15:13:23,860 filetools.py:339 INFO Symlinked 0.2.0-foss-2022a.lua to /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all/scib-pipeline/default -== 2023-01-23 15:13:23,861 module_generator.py:1489 INFO Module default version file written to point to /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all/scib-pipeline/default -== 2023-01-23 15:13:28,975 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to 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-== 2023-01-23 15:13:28,976 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/zen2-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/zen2-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-23 15:13:28,976 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/kyukon/home/gent/438/vsc43810/.vscode-server/bin/97dec172d3256f8ca4bfb2143f3f76b503ca0534/bin/remote-cli:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-23 15:13:28,976 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: '/etc/modulefiles/vsc/cluster/slaking.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCCcore/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zlib/1.2.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/binutils/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCC/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/numactl/2.0.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/XZ/5.2.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxml2/2.9.13-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpciaccess/0.16-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/hwloc/2.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenSSL/1.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libevent/2.1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCX/1.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libfabric/1.15.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PMIx/4.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCC/1.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenMPI/4.1.4-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenBLAS/0.3.20-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FlexiBLAS/3.2.0-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW/3.3.10-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gompi/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW.MPI/3.3.10-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ScaLAPACK/2.2.0-gompi-2022a-fb.lua:/apps/gent/RHEL8/haswell-ib/modules/all/foss/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/bzip2/1.0.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ncurses/6.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libreadline/8.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tcl/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SQLite/3.38.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GMP/6.2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libffi/3.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Python/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/expat/2.4.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpng/1.6.37-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Brotli/1.0.9-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/freetype/2.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/util-linux/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/fontconfig/2.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/xorg-macros/1.19.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/X11/20220504-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gzip/1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lz4/1.9.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zstd/1.5.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libdrm/2.4.110-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libglvnd/1.4.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libunwind/1.6.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LLVM/14.0.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Mesa/22.0.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libGLU/9.0.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pixman/0.40.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gettext/0.21-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PCRE/8.45-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLib/2.72.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/cairo/1.17.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PCRE2/10.40-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NASM/2.15.05-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libjpeg-turbo/2.1.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/jbigkit/2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libdeflate/1.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LibTIFF/4.3.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tk/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/cURL/7.83.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NLopt/2.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libogg/1.3.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FLAC/1.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libvorbis/1.3.7-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libopus/1.3.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LAME/3.100-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libsndfile/1.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Szip/2.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HDF5/1.12.2-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UDUNITS/2.2.28-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ATK/2.38.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HarfBuzz/4.2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FriBidi/1.0.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pango/1.50.7-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GTK2/2.24.33-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Ghostscript/9.56.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/JasPer/2.0.33-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LittleCMS/2.13.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ImageMagick/7.1.0-37-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLPK/5.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/nodejs/16.15.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/netCDF/4.9.0-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GEOS/3.10.3-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/nlohmann_json/3.10.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PROJ/9.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgeotiff/1.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pybind11/2.9.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libtirpc/1.3.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HDF/4.2.15-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GDAL/3.5.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/MPFR/4.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgit2/1.4.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/OpenPGM/5.2.122-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libsodium/1.0.18-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/ZeroMQ/4.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxslt/1.1.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lxml/4.9.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/BeautifulSoup/4.10.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/IPython/8.5.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/rpy2/3.5.7-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libyaml/0.2.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyYAML/6.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DB/18.1.40-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Perl/5.34.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/git/2.36.0-GCCcore-11.3.0-nodocs.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GitPython/3.1.27-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/snakemake/7.20.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ICU/71.1-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GTS/0.7.6-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libgd/2.3.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/double-conversion/3.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/graphite2/1.3.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DBus/1.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSPR/4.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSS/3.79-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/snappy/1.1.9-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qt5/5.15.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Graphviz/5.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GSL/2.7-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Java/11.0.2.lua:/apps/gent/RHEL8/haswell-ib/modules/all/R/4.2.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Boost/1.79.0-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/RapidJSON/1.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/RE2/2022-06-01-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/utf8proc/2.7.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Arrow/8.0.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/arrow-R/8.0.0-foss-2022a-R-4.2.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SciPy-bundle/2022.05-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tkinter/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow/9.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qhull/2020.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/matplotlib/3.5.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LZO/2.10-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Blosc/1.21.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-build/0.15.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTables/3.8.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/statsmodels/0.13.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tqdm/4.64.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Eigen/3.4.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/arpack-ng/3.8.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PyCairo/1.21.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libarchive/3.6.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/elfutils/0.187-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Clang/13.0.1-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-misc/0.1.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/pydot/1.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Deprecated/1.2.13-foss-2022a.lua') -== 2023-01-23 15:13:28,986 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-4q2r7gcu/tmp7sr6v_ei/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/zen2-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-23 15:13:44,288 easyblock.py:2838 INFO Installing extensions -== 2023-01-23 15:13:44,292 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:44,294 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:44,294 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:44,294 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:44,295 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:44,336 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:44,336 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:44,337 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:44,338 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:44,338 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:44,339 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:44,340 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:44,340 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:44,340 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:44,340 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:44,340 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:44,341 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:44,342 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:44,362 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:44,362 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:44,362 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:48,510 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:48,510 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,511 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:48,511 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:48,511 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,512 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:48,512 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,536 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,537 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,538 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,538 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,539 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,539 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,539 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,539 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,540 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,540 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,541 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:48,541 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,542 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:48,543 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:48,543 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,544 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:48,544 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,544 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,545 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,545 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,545 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,546 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,547 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,547 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,547 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,547 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,547 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,548 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,549 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:48,549 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,550 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:48,550 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,550 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,551 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,551 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,551 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,552 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,552 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,552 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,553 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,553 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,553 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,553 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,553 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,554 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,554 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,555 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:48,555 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,556 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:48,556 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,556 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,557 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,557 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,557 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,580 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,580 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,580 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,581 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,581 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,582 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:48,582 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,583 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:48,583 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:48,583 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,584 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:48,584 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,584 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,585 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,585 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,586 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,586 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,587 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,587 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,587 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,587 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,588 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,589 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:48,589 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,590 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:48,590 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:48,601 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,602 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:48,602 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,602 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,603 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,603 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,603 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,604 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,605 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,605 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,606 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:48,606 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,607 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:48,607 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:48,607 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,608 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:48,608 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:48,608 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,609 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:48,609 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,609 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,610 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,611 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,611 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,611 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:48,631 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:48,631 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,633 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:48,633 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,633 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,634 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,634 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,634 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,635 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,635 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,636 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,637 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,637 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,638 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:48,638 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,639 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:48,640 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:48,640 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,641 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:48,641 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:48,641 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,642 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:48,642 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:48,642 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,643 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:48,643 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,644 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:48,644 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,645 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:48,645 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:48,645 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,646 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:48,646 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,646 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,647 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,647 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,647 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,648 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,648 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,649 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:48,649 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,650 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:48,650 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,650 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,651 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,651 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,651 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,661 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,662 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,662 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,664 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,664 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,665 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:48,665 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,666 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:48,667 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,667 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,667 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,668 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,668 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,668 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,669 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,669 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,669 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,670 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,671 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:48,671 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,671 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:48,672 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,672 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,684 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,684 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,685 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,686 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,686 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,686 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,687 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,687 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,687 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,687 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,688 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,688 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,689 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:48,689 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,690 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:48,690 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,690 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,691 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,691 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,691 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,692 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,692 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,692 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,693 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,693 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,694 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:48,694 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,706 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:48,706 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:48,706 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,708 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:48,708 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,708 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,709 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,709 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,709 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,710 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,710 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,712 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:48,712 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,713 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:48,713 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,713 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,714 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,714 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,714 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,715 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,715 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,715 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,716 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,717 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,718 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:48,718 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,718 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:48,718 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,718 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,718 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,718 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,719 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,719 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,719 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,719 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,719 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,719 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,720 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:48,720 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,721 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:48,721 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,721 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,721 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,721 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,721 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,721 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,722 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,722 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,722 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,722 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,723 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:48,723 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,723 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:48,723 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:48,723 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,724 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:48,724 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:48,724 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,724 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:48,724 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,725 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,725 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,725 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,755 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,756 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,757 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:48,757 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,757 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:48,758 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,758 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,758 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,758 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,758 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,758 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,758 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,759 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,759 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,759 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,760 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:48,760 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,760 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:48,760 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,760 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,761 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,761 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,761 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,761 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,761 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,761 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,761 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,761 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,762 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:48,762 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,763 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:48,763 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:48,763 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,763 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:48,763 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,763 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,764 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,764 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,764 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,764 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,765 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,765 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,765 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,778 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata' -== 2023-01-23 15:13:48,779 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:48,779 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previously undefined) -== 2023-01-23 15:13:48,779 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:48,779 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:48,780 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:48,781 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:48,782 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:48,782 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:48,782 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:48,783 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:48,783 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:48,783 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:48,784 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:48,784 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:48,785 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:48,785 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:48,786 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:48,787 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:48,787 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:48,802 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:48,802 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:48,802 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:48,804 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:48,804 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,804 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:48,804 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:48,804 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,804 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:48,805 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,805 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,805 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,805 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,805 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,805 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,806 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,808 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:48,808 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,808 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:48,808 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:48,808 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,809 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:48,809 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,809 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,809 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,809 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,810 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,810 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,811 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,811 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,812 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:48,823 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,824 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:48,824 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,824 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,824 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,824 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,825 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,825 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,825 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,825 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,825 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,826 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,826 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,826 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,826 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,826 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,826 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,828 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:48,828 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,828 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:48,828 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,828 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,829 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,829 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,829 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,829 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,830 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,830 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,830 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,830 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,831 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:48,831 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,832 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:48,832 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:48,832 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,832 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:48,832 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,833 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,833 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,833 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,833 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,833 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,834 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,834 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,834 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,845 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,845 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,846 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:48,846 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,847 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:48,847 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:48,847 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,847 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:48,847 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,847 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,848 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,848 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,848 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,848 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,848 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,848 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,849 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,849 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,849 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,850 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:48,850 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,851 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:48,851 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:48,851 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,851 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:48,851 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:48,852 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,852 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:48,852 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,852 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,852 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,853 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:48,854 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:48,855 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,855 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:48,855 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,855 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,855 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,856 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,856 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,856 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,867 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,867 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,868 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,868 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,869 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:48,869 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,869 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:48,869 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:48,869 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,869 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:48,870 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:48,870 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,870 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:48,870 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:48,870 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,870 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:48,870 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,871 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:48,871 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,872 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:48,872 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:48,872 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,872 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:48,873 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,873 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,873 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,873 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,873 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,874 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,874 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,875 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:48,875 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,875 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:48,876 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,876 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,876 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,876 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,876 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,876 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,877 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,877 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,877 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,877 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,889 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:48,890 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,890 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:48,890 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,890 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,890 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,890 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,890 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,891 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,891 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,891 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,891 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,891 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,892 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:48,892 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,892 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:48,892 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,893 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,893 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,893 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,893 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,893 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,893 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,893 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,894 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,894 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,895 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:48,895 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,896 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:48,896 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,896 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,896 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,897 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,897 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,897 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,897 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,897 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,898 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,898 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,899 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:48,899 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,899 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:48,899 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:48,900 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,900 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:48,900 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,911 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,911 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,912 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,912 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,912 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,912 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,913 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:48,913 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,913 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:48,914 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,914 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,914 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,914 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,914 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,914 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,914 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,914 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,915 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,915 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,915 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,915 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,915 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,915 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,915 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,916 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:48,916 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,917 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:48,917 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,917 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,917 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,917 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,917 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,918 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,918 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,918 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,918 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,918 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,919 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:48,919 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,919 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:48,920 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,920 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,920 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,920 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,920 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,921 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,921 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,921 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,921 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,932 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,933 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:48,933 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,934 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:48,934 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:48,934 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,934 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:48,934 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:48,934 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,934 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:48,935 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,935 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,935 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,935 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,935 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,935 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,935 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,936 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,936 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,937 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:48,937 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,937 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:48,937 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,937 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,937 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,937 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,938 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,938 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,938 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,938 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,938 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,938 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,939 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:48,939 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,939 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:48,940 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:48,940 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,940 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:48,940 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,940 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,940 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,940 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,941 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,941 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,941 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,942 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:48,942 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,942 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:48,942 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:48,942 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,942 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:48,943 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,943 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,943 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,943 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,943 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,943 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,944 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,948 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'python_dateutil' -== 2023-01-23 15:13:48,948 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:48,948 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:48,948 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:48,948 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:48,950 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:48,951 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:48,951 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:48,951 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:48,952 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:48,953 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:48,976 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:48,976 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:48,977 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:48,977 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:48,977 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:48,978 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:48,978 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:48,979 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:48,979 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:48,981 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:48,981 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:48,981 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:48,982 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:48,982 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,982 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:48,983 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:48,983 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,983 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:48,983 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,983 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,983 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,983 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,984 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,984 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,984 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,984 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,984 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,984 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,984 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:48,985 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:48,985 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,986 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:48,986 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:48,986 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,986 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:48,986 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,986 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,987 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,987 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,987 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,987 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,987 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,987 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,987 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,988 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,989 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:48,989 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,989 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:48,989 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:48,989 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,989 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:48,990 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,990 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,990 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,990 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,990 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,990 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,990 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,991 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,991 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,991 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,991 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,991 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,992 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:48,992 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,992 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:48,993 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:48,993 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,993 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:48,993 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,993 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,993 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,993 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:48,993 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,994 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:48,994 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:48,995 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:48,995 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,995 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:48,995 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:48,995 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,995 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:48,996 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:48,996 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,996 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:48,996 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:48,996 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:48,996 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:48,996 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,997 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,997 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,997 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:48,997 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,021 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,021 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,021 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,022 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,022 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,022 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,022 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,022 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,023 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,023 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,023 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,023 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,023 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,023 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,023 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,024 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,024 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,025 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,025 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,025 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,025 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,025 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,025 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,025 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,026 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,026 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,026 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,026 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,026 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,027 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,027 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,028 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,028 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,028 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,028 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,028 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,028 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,029 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,029 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,029 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,029 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,029 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,029 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,029 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,030 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,030 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,031 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,031 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,031 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,031 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,031 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,031 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,031 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,032 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,032 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,032 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,032 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,033 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,033 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,033 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,033 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,033 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,034 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,034 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,034 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,034 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,035 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,035 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,036 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,036 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,036 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,036 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,036 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,036 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,036 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,036 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,037 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,037 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,037 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,037 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,037 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,038 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:49,038 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,038 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:49,039 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,039 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,039 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,039 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,039 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,057 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,057 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,057 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,057 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,057 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,058 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,058 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,058 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,059 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,059 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,059 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,059 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,059 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,059 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,059 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,060 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,060 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,060 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,060 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,060 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,060 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,060 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,061 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,061 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:49,062 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,062 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:49,062 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,062 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,062 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,062 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,062 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,063 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,063 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,063 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,063 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,063 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,064 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:49,064 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,064 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:49,065 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,065 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,065 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,065 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,065 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,065 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,065 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,066 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,066 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,066 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,067 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:49,067 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,067 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:49,080 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,080 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,081 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,081 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,081 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,081 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,081 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,081 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,082 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,082 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,083 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,083 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,084 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,084 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,084 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,084 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,084 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,084 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,084 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,085 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,085 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,085 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,085 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,086 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:49,086 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,086 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:49,086 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,086 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,087 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,087 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,087 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,087 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,087 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,087 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,087 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,088 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,088 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:49,089 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,089 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:49,089 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:49,089 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,089 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:49,089 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,089 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,090 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,090 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,090 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,090 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,090 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,090 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,090 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,091 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,091 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,091 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,103 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,103 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,103 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,103 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,103 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,104 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,104 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,104 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,104 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,104 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,104 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,104 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,105 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,105 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,106 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,106 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,106 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,106 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,106 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,106 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,106 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,107 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,107 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,107 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,107 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,107 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,108 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:49,108 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,108 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:49,108 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:49,109 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,109 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:49,109 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,109 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,109 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,109 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,109 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,110 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,110 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,113 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'click' -== 2023-01-23 15:13:49,113 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:49,113 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:49,113 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:49,113 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:49,248 easyconfig.py:1924 INFO Successfully obtained EB_cryptography class instance from easybuild.easyblocks.cryptography -== 2023-01-23 15:13:49,248 easyconfig.py:1941 INFO Successfully obtained class 'EB_cryptography' for easyblock 'None' (software name 'cryptography') -== 2023-01-23 15:13:49,248 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:49,249 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:49,249 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:49,249 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:49,249 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:49,251 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:49,251 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:49,251 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:49,252 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:49,252 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:49,252 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:49,253 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:49,253 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:49,253 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:49,253 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:49,254 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:49,255 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:49,267 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:49,268 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:49,268 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:49,269 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:49,269 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,270 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:49,270 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:49,270 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,270 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:49,270 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,270 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,270 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,271 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,271 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,271 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,272 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,272 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,273 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:49,273 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,273 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:49,273 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,273 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,274 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,274 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,274 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,274 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,274 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,274 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,275 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,275 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,277 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:49,277 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,277 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:49,277 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,277 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,278 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,278 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,278 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,278 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,278 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,278 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,278 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,279 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,281 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:49,281 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,281 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:49,281 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,281 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,282 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,282 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,282 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,282 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,282 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,282 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,283 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,283 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,284 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:49,284 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,284 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:49,285 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:49,285 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,285 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:49,285 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,285 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,286 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,286 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,286 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,286 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,286 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,286 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,287 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,288 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,288 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,289 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,289 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,289 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,289 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,289 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,289 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,290 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,290 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,290 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,290 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,290 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,291 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,291 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,291 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,291 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,292 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,292 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,292 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,292 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,292 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,293 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,293 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,293 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,293 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,316 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,316 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,317 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,317 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,317 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,317 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,317 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,318 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,318 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,318 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,318 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,318 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,319 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,319 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,319 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,319 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,319 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,319 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,320 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,320 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,321 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,321 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,321 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,321 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,321 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,321 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,321 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,321 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,322 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,322 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,322 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,322 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,322 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,323 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,323 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,323 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,324 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,324 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,324 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,324 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,324 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,324 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,324 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,325 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,325 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,325 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,326 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,326 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,327 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,327 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,327 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,327 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,339 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,339 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,340 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,340 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,340 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,340 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,340 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,341 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:49,341 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,341 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:49,342 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,342 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,342 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,342 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,342 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,342 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,342 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,343 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,343 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,343 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,344 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,344 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,344 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,344 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,344 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,344 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,345 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,345 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,345 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,345 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,345 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,345 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,346 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,347 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:49,347 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,347 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:49,347 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,347 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,348 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,348 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,348 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,348 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,348 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,348 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,349 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,349 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,350 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:49,350 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,350 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:49,350 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,350 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,365 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,365 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,365 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,365 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,366 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,366 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,366 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,366 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,367 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:49,367 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,368 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:49,368 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,368 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,368 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,368 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,368 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,369 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,369 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,369 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,369 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,370 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,370 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,370 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,370 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,371 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,371 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,371 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,371 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,372 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,372 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,372 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,372 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,372 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,372 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,372 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,373 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,373 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,374 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:49,374 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,374 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:49,374 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,374 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,374 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,375 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,375 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,375 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,375 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,375 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,375 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,375 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,376 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:49,376 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,377 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:49,377 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:49,377 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,377 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:49,377 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,377 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,377 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,378 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,378 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,378 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,379 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,379 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,380 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,380 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,380 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,380 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,380 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,380 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,380 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,381 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,381 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,381 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,381 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,381 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,381 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,408 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,408 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,408 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,408 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,408 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,409 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,409 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,409 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,410 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,410 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,410 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,410 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,410 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,412 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:49,412 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,412 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:49,412 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:49,412 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,413 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:49,413 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,413 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,413 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,413 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,413 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,414 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,414 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,417 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'cryptography' -== 2023-01-23 15:13:49,417 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:49,417 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:49,417 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:49,417 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:49,418 cryptography.py:52 INFO Adding -pthread to prebuildopts & preinstallopts of cryptography. -Final values: prebuildopts=CFLAGS="$CFLAGS -pthread" and preinstallopts=CFLAGS="$CFLAGS -pthread" -== 2023-01-23 15:13:49,419 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:49,420 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:49,420 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:49,421 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:49,421 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:49,422 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:49,423 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:49,423 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:49,424 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:49,424 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:49,424 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:49,425 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:49,425 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:49,425 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:49,425 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:49,426 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:49,427 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:49,445 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:49,445 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:49,445 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:49,446 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:49,447 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,447 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:49,447 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:49,447 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,447 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:49,448 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,448 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,448 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,448 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,448 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,448 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,448 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,449 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,449 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,449 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,449 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,450 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:49,450 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,451 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:49,451 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,451 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,451 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,451 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,451 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,451 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,452 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,452 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,452 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,464 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,464 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,465 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:49,465 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,466 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:49,466 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,466 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,466 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,466 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,466 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,467 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,467 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,467 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,467 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,467 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,467 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,467 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,468 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,468 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,468 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,469 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:49,469 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,469 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:49,469 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,469 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,470 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,470 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,470 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,470 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,470 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,470 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,471 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,471 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,472 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:49,472 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,472 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:49,472 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:49,472 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,472 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:49,472 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,473 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,473 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,473 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,473 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,473 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,473 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,473 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,474 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,474 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,474 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,475 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,475 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,475 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,475 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,476 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,476 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,476 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,476 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,476 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,476 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,477 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,477 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,478 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,479 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,479 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,479 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,479 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,479 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,479 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,480 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,480 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,480 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,480 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,480 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,480 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,481 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,503 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,504 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,504 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,504 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,504 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,504 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,504 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,504 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,505 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,505 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,505 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,505 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,505 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,506 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,506 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,506 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,507 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,507 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,507 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,507 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,507 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,507 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,507 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,507 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,508 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,508 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,509 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,509 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,509 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,509 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,509 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,509 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,510 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,510 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,510 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,510 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,510 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,510 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,510 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,511 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,511 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,512 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,512 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,512 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,512 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,512 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,512 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,512 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,513 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,513 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,513 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,513 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,514 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:49,514 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,525 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:49,525 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,525 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,526 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,526 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,526 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,526 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,526 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,526 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,527 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,527 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,528 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,528 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,528 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,528 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,528 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,528 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,528 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,529 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,529 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,529 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,529 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,529 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,529 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,529 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,530 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,530 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,530 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,530 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,531 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:49,531 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,531 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:49,531 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,531 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,532 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,532 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,532 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,532 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,532 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,532 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,532 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,532 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,533 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:49,533 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,534 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:49,534 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,534 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,534 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,534 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,534 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,535 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,535 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,535 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,535 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,535 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,536 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:49,536 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,536 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:49,537 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,537 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,537 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,537 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,537 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,537 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,537 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,537 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,538 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,538 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,538 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,538 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,538 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,538 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,538 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,539 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,539 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,540 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,540 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,540 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,540 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,540 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,540 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,541 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,541 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,541 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,541 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,541 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,542 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:49,542 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,543 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:49,543 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,543 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,543 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,543 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,543 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,544 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,544 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,544 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,544 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,544 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,545 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:49,545 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,546 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:49,546 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:49,546 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,546 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:49,561 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,561 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,561 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,562 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,562 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,562 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,563 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,563 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,564 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,564 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,564 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,564 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,564 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,564 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,565 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,565 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,565 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,565 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,565 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,565 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,565 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,567 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,567 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,567 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,567 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,567 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,567 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,568 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,568 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,568 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,568 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,568 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,568 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,569 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,570 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:49,570 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,570 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:49,570 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:49,570 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,570 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:49,571 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,571 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,571 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,571 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,571 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,571 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,572 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,575 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'hatchling' -== 2023-01-23 15:13:49,575 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:49,575 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:49,575 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:49,575 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:49,577 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:49,578 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:49,578 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:49,578 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:49,578 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:49,579 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:49,580 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:49,580 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:49,592 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:49,592 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:49,592 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:49,593 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:49,593 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:49,594 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:49,594 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:49,594 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:49,594 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:49,594 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:49,594 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:49,608 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:49,608 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:49,608 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:49,610 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:49,610 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,610 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:49,610 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:49,610 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,611 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:49,611 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,611 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,611 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,611 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,611 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,612 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,612 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,613 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:49,614 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,614 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:49,614 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,614 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,614 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,615 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,615 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,615 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,615 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,615 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,615 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,616 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,617 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:49,617 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,618 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:49,618 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,618 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,618 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,640 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,640 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,641 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,641 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,641 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,641 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,641 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,641 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,642 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,642 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,642 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,642 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,643 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:49,643 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,643 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:49,644 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,644 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,644 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,644 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,644 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,645 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,645 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,645 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,645 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,645 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,646 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:49,646 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,647 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:49,647 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:49,647 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,647 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:49,647 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,647 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,648 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,648 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,648 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,648 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,649 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,650 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,650 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,650 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,650 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,651 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,651 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,651 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,651 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,651 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,651 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,652 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,652 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,652 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,652 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,652 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,652 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,652 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,653 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,653 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,654 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,654 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,654 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,654 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,654 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,654 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,655 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,655 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,655 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,655 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,655 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,655 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,655 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,655 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,656 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,656 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,657 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,657 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,657 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,657 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,657 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,657 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,658 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,658 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,658 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,658 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,658 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,659 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,659 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,660 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,660 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,660 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,660 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,661 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,661 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,661 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,661 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,661 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,661 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,661 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,662 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,662 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,663 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,663 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,663 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,663 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,663 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,663 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,663 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,664 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,664 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,664 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,664 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,665 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,665 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,665 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,666 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,666 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,666 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,666 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,666 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,666 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,667 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,667 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,667 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,667 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,668 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:49,668 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,668 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:49,669 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,669 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,669 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,669 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,669 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,669 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,670 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,670 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,670 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,670 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,694 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,695 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,695 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,695 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,695 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,695 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,695 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,695 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,696 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,696 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,696 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,696 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,696 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,697 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,697 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,697 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,698 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:49,698 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,698 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:49,698 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,699 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,699 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,699 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,699 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,699 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,699 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,699 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,700 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,700 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,701 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:49,701 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,701 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:49,701 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,702 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,702 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,702 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,702 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,702 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,702 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,702 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,703 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,703 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,704 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:49,704 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,722 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:49,722 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,723 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,723 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,723 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,723 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,723 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,723 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,723 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,724 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,724 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,725 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,725 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,726 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,726 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,726 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,726 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,726 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,726 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,726 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,727 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,727 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,727 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,727 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,728 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:49,728 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,728 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:49,728 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,728 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,729 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,729 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,729 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,729 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,729 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,729 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,729 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,730 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,731 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:49,731 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,731 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:49,731 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:49,731 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,731 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:49,732 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,732 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,732 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,732 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,732 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,732 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,733 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,734 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,735 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,735 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,735 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,735 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,735 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,735 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,736 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,736 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,736 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,736 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,736 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,736 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,737 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,738 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,738 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,738 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,738 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,738 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,738 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,739 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,739 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,739 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,739 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,739 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,739 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,740 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:49,741 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,741 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:49,741 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:49,741 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,741 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:49,741 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,742 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,742 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,742 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,742 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,742 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,743 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,743 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,743 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,743 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,743 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,774 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata2ri' -== 2023-01-23 15:13:49,774 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:49,775 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:49,775 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:49,775 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:49,776 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:49,777 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:49,777 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:49,777 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:49,777 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:49,778 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:49,778 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:49,779 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:49,779 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:49,780 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:49,780 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:49,780 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:49,781 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:49,782 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:49,782 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:49,782 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:49,783 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:49,783 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:49,783 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:49,785 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:49,785 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,785 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:49,785 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:49,785 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,785 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:49,786 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,786 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,786 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,786 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,786 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,786 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,786 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,787 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,787 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,787 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,787 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,788 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:49,788 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,788 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:49,788 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,789 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,789 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,789 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,789 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,789 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,789 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,789 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,790 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,790 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,791 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:49,791 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,792 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:49,792 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,792 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,792 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,792 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,792 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,793 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,793 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,793 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,793 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,794 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,795 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:49,795 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,795 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:49,795 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,795 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,795 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,796 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,796 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,796 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,796 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,796 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,796 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,796 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,797 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:49,797 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,798 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:49,798 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:49,798 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,798 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:49,798 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,798 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,798 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,799 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,799 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,799 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,799 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,799 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,799 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,799 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,800 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,800 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,800 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,801 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,801 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,801 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,801 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,801 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,801 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,802 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,802 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,802 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,802 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,802 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,819 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,820 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,820 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,820 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,823 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,823 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,823 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,823 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,823 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,823 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,824 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,824 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,824 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,824 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,824 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,824 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,824 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,825 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,826 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,826 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,826 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,826 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,826 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,827 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,827 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,827 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,827 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,827 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,827 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,827 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,828 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,828 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,829 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,829 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,829 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,829 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,829 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,829 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,829 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,830 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,830 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,830 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,830 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,830 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,831 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,831 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,831 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,831 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,832 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,832 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,832 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,832 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,832 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,832 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,832 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,833 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,833 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,834 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,834 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,834 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,834 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,834 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,834 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,835 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,835 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,835 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,835 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,835 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,835 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,835 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,836 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:49,836 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,837 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:49,837 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,837 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,837 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,837 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,837 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,837 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,838 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,838 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,838 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,838 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,839 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,839 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,839 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,839 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,839 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,840 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,840 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,840 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,840 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,840 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,840 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,840 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,841 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,842 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:49,842 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,842 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:49,843 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,843 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,843 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,843 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,843 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,882 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,883 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,883 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,883 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,883 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,884 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:49,884 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,884 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:49,884 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,884 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,885 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,885 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,885 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,885 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,885 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,885 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,885 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,886 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,887 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:49,887 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,887 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:49,887 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,887 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,887 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,887 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,887 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,888 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,888 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,888 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,888 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,888 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,888 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,888 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,889 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,889 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,889 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,890 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:49,890 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,890 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:49,890 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,890 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,890 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,891 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,891 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,891 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,891 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,891 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,891 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,891 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,892 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:49,892 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,893 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:49,893 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,893 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,893 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,893 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,893 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,894 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,894 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,894 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,894 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,894 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,895 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:49,895 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,895 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:49,895 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:49,895 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,896 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:49,896 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:49,896 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,896 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:49,896 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,896 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,896 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,897 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,898 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,898 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,899 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,899 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,899 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,899 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,899 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,899 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,900 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,900 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,900 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,900 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,900 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,902 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:49,902 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,902 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:49,902 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:49,902 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,902 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:49,902 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,903 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,903 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,903 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,903 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,903 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,903 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,904 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:49,904 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,904 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:49,905 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:49,905 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,905 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:49,905 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,905 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,905 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,905 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,906 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,906 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,906 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,928 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-23 15:13:49,928 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:49,928 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:49,928 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:49,928 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:49,930 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:49,930 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:49,931 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:49,931 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:49,931 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:49,932 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:49,932 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:49,932 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:49,933 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:49,933 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:49,934 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:49,934 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:49,934 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:49,934 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:49,935 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:49,936 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:49,948 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:49,948 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:49,949 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:49,950 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:49,950 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,950 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:49,951 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:49,951 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,951 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:49,951 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,951 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,951 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,951 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,952 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,952 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,952 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,952 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,952 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,952 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,952 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,953 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:49,953 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,954 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:49,954 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,954 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,954 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,954 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,954 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,955 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,955 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,955 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,955 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,956 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,957 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:49,957 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,957 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:49,957 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,957 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,957 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,958 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,958 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,958 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,958 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,958 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,970 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,971 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,972 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:49,973 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,973 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:49,973 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:49,973 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,973 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:49,973 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,973 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,974 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,974 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,974 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,974 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,974 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,975 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:49,975 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,975 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:49,975 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:49,976 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,976 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:49,976 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,976 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,976 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,976 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,976 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,977 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,977 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,978 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:49,978 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,978 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:49,979 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:49,979 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,979 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:49,979 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:49,979 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,979 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:49,980 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,980 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,980 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,980 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:49,981 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:49,981 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,982 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:49,982 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:49,982 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,982 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:49,982 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:49,982 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,982 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:49,983 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,983 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,983 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,983 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,983 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,983 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:49,983 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:49,985 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:49,985 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,985 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:49,985 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,985 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,986 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,986 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,986 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,986 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,986 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,986 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,987 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,987 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,988 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,988 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,988 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,989 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:49,989 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,989 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:49,989 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,989 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,989 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,990 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:49,990 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,990 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:49,990 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,991 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:49,991 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,992 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:49,992 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:49,992 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,992 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:49,992 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,993 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,993 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:49,993 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:49,993 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,993 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:49,994 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:49,995 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:49,995 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,995 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:49,995 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:49,995 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:49,996 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:49,996 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:49,996 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,031 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,031 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,031 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,032 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,032 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,033 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:50,033 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,033 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:50,034 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,034 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,034 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,034 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,034 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,035 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,035 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,035 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,035 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,035 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,036 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,037 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,037 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,037 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,037 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,037 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,038 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,038 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,038 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,038 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,038 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,039 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,039 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,039 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,039 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,039 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,040 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,040 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,041 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:50,041 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,041 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:50,041 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,042 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,042 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,042 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,042 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,042 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,042 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,042 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,043 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,043 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,044 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:50,044 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,044 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:50,044 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,044 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,044 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,045 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,045 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,045 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,045 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,045 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,045 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,045 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,046 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:50,046 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,047 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:50,047 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,047 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,047 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,047 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,047 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,047 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,048 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,048 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,048 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,048 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,048 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,048 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,048 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,048 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,049 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,050 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,050 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,050 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,050 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,050 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,050 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,050 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,050 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,051 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,051 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,051 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,051 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,051 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,052 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:50,063 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,064 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:50,064 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,064 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,064 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,064 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,064 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,065 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,065 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,065 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,065 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,065 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,066 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:50,066 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,066 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:50,066 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:50,067 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,067 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:50,067 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,067 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,067 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,067 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,067 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,068 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,068 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,069 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,069 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,070 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,070 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,070 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,070 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,070 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,070 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,070 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,071 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,071 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,071 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,071 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,072 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,072 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,072 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,072 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,072 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,073 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,073 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,073 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,073 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,073 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,073 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,073 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,074 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,075 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:50,075 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,075 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:50,075 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:50,075 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,075 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:50,076 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,076 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,076 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,076 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,076 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,077 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,078 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,081 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scgen' -== 2023-01-23 15:13:50,081 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:50,081 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:50,081 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:50,081 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:50,083 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:50,084 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:50,084 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:50,084 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:50,084 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:50,108 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:50,108 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:50,109 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:50,110 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:50,110 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:50,110 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:50,111 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:50,111 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:50,111 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:50,111 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:50,111 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:50,111 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:50,112 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:50,112 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:50,124 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:50,124 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:50,125 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:50,126 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:50,126 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,127 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:50,127 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:50,127 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,127 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:50,128 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,128 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,128 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,128 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,128 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,128 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,129 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,131 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:50,131 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,131 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:50,131 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,131 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,132 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,132 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,132 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,132 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,132 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,132 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,133 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,133 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,133 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,133 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,133 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,133 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,134 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,134 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:50,135 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,135 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:50,135 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,135 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,135 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,135 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,135 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,136 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,136 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,136 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,136 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,136 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,162 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,163 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:50,163 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,164 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:50,164 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,164 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,164 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,164 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,164 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,164 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,165 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,165 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,165 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,165 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,166 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:50,166 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,166 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:50,166 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:50,166 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,167 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:50,167 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,167 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,167 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,167 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,167 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,167 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,168 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,169 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,170 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:50,170 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,171 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:50,171 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:50,171 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,171 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:50,171 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,171 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,172 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,172 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,172 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,172 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,173 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,174 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:50,174 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,175 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:50,175 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:50,175 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,175 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:50,175 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,176 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,176 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,176 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,176 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,177 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,177 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,177 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,177 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,177 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:50,187 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:50,187 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,187 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:50,187 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,187 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,187 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,188 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,188 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,188 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,188 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,188 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,188 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,189 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,190 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,190 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,190 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,190 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,191 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,191 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,191 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,191 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,192 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,192 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,192 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,192 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,192 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,193 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:50,194 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,194 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:50,194 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:50,194 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,194 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:50,195 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,195 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,195 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,195 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,195 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,196 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,196 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,197 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:50,197 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,197 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:50,198 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,198 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,198 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,198 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,198 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,199 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,199 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,199 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,199 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,199 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,201 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:50,201 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,201 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:50,201 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,201 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,201 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,201 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,201 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,202 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,202 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,202 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,202 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,202 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,203 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,203 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,204 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,204 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,204 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,204 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,205 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,205 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,205 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,206 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,206 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:50,207 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,207 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:50,207 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,207 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,207 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,208 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,208 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,208 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,208 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,208 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,208 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,208 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,209 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:50,209 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,210 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:50,210 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,210 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,210 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,210 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,210 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,211 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,211 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,211 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,211 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,211 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,212 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:50,212 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,213 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:50,213 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,213 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,213 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,213 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,213 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,214 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,214 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,214 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,214 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,214 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,215 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,215 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,215 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,215 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,215 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,216 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,217 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,217 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,217 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,244 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,244 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,244 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,245 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,245 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,245 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,245 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,245 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,246 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,247 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:50,247 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,247 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:50,247 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,247 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,247 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,248 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,248 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,248 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,248 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,248 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,248 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,248 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,249 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:50,249 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,250 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:50,250 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:50,250 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,250 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:50,250 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,250 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,250 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,251 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,251 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,251 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,251 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,251 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,251 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,251 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,252 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,252 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,253 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,253 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,253 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,253 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,253 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,253 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,253 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,254 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,254 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,254 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,254 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,265 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,265 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,266 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,266 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,267 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,267 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,267 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,267 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,267 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,267 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,268 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,268 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,268 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,268 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,268 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,269 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:50,269 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,269 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:50,269 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:50,270 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,270 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:50,270 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,270 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,270 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,270 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,270 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,271 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,271 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,274 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'bbknn' -== 2023-01-23 15:13:50,274 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:50,274 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:50,274 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:50,274 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:50,276 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:50,276 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:50,277 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:50,277 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:50,277 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:50,278 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:50,289 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:50,289 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:50,290 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:50,290 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:50,291 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:50,291 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:50,292 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:50,293 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:50,295 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:50,295 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:50,295 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:50,297 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:50,297 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,298 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:50,298 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:50,298 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,298 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:50,298 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,298 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,299 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,299 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,299 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,299 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,299 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,300 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,300 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,300 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,300 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,301 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:50,301 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,302 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:50,302 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,302 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,302 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,302 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,302 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,303 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,303 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,303 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,303 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,303 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,317 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,318 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:50,318 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,318 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:50,319 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,319 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,319 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,319 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,319 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,320 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,320 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,320 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,320 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,320 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,320 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,321 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,321 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,321 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,321 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,322 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:50,322 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,323 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:50,323 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,323 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,323 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,324 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,324 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,324 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,324 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,324 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,324 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,325 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,326 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:50,326 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,326 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:50,326 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:50,326 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,344 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:50,344 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,344 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,344 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,344 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,344 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,345 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,346 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,347 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:50,347 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,347 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:50,347 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:50,347 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,348 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:50,348 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,348 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,348 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,348 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,348 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,349 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,349 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,349 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,350 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:50,350 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,350 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:50,351 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:50,351 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,351 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:50,351 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,351 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,351 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,351 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,352 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,352 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,352 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,352 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,352 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,352 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:50,353 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:50,353 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,353 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:50,354 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,354 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,354 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,354 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,354 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,366 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,366 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,366 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,367 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,367 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,368 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,368 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,368 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,369 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,369 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,369 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,369 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,369 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,369 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,370 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,370 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,370 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,370 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,371 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:50,371 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,371 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:50,372 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:50,372 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,372 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:50,372 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,372 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,372 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,372 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,373 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,373 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,373 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,374 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:50,374 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,374 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:50,374 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,374 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,375 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,375 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,375 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,375 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,375 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,375 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,375 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,375 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,376 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:50,377 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,377 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:50,377 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,377 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,377 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,377 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,377 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,378 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,378 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,378 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,378 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,378 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,379 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,379 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,379 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,379 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,380 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,380 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,380 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,380 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,380 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,380 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,380 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,381 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,381 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,382 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:50,382 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,383 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:50,383 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,383 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,383 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,384 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,384 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,384 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,384 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,384 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,385 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,385 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,386 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:50,386 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,386 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:50,386 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,387 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,387 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,387 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,387 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,387 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,388 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,388 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,388 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,388 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,389 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:50,389 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,390 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:50,390 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,390 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,390 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,390 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,391 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,391 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,391 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,391 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,391 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,391 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,392 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,417 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,417 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,418 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,418 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,418 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,418 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,419 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,419 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,419 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,419 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,419 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,419 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,419 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,420 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:50,420 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,421 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:50,421 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,421 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,421 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,421 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,421 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,422 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,422 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,422 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,422 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,422 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,423 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:50,423 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,423 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:50,423 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:50,423 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,424 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:50,424 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,424 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,424 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,424 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,424 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,424 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,425 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,426 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,426 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,427 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,427 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,427 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,427 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,427 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,427 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,427 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,428 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,428 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,428 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,428 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,429 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,429 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,429 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,441 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,441 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,441 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,442 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,442 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,442 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,442 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,442 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,442 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,443 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,444 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:50,444 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,444 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:50,444 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:50,444 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,444 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:50,444 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,444 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,445 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,445 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,445 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,445 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,446 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,446 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,446 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,446 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,448 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'llvmlite' -== 2023-01-23 15:13:50,448 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:50,449 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:50,449 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:50,449 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:50,450 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:50,451 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:50,451 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:50,451 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:50,451 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:50,453 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:50,453 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:50,453 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:50,454 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:50,455 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:50,455 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:50,456 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:50,456 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:50,466 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:50,467 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:50,468 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:50,487 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:50,487 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:50,488 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:50,489 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:50,489 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,490 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:50,490 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:50,490 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,490 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:50,490 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,490 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,491 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,491 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,491 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,491 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,491 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,491 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,491 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,491 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,492 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,493 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:50,493 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,493 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:50,493 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,493 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,493 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,493 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,494 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,494 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,494 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,494 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,494 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,494 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,494 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,495 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,495 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,495 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,495 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,496 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:50,496 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,496 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:50,496 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,496 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,497 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,497 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,497 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,497 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,497 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,497 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,498 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,498 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,499 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:50,499 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,500 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:50,500 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,500 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,500 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,500 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,500 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,500 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,501 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,501 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,501 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,501 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,502 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:50,502 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,502 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:50,502 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:50,502 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,502 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:50,503 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,503 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,503 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,503 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,503 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,503 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,503 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,504 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,504 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,504 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,504 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,505 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:50,505 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,505 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:50,505 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:50,505 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,506 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:50,506 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,506 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,506 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,506 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,506 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,506 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,507 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,507 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,507 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,507 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,507 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,508 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:50,508 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,508 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:50,508 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:50,508 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,509 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:50,509 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,509 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,509 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,509 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,509 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,510 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,510 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,510 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,510 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,510 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:50,511 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:50,511 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,511 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:50,511 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,511 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,512 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,512 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,512 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,512 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,512 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,512 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,513 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,513 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,514 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,514 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,514 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,514 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,514 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,514 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,514 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,514 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,515 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,515 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,515 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,515 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,515 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,516 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:50,516 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,516 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:50,517 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:50,517 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,517 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:50,517 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,517 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,517 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,517 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,518 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,518 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,518 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,519 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:50,519 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,519 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:50,519 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,519 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,519 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,520 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,520 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,520 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,520 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,520 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,520 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,520 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,521 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:50,521 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,522 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:50,522 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,522 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,522 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,533 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,533 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,533 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,534 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,534 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,534 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,534 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,535 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,535 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,535 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,535 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,535 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,536 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,536 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,536 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,536 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,536 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,536 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,537 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,537 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,538 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:50,538 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,539 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:50,539 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,539 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,539 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,539 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,539 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,539 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,540 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,540 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,540 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,540 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,541 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:50,541 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,541 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:50,575 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,575 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,576 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,576 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,576 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,576 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,576 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,576 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,576 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,577 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,577 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:50,578 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,578 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:50,578 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,578 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,578 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,578 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,578 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,579 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,579 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,579 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,579 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,580 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,581 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,581 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,581 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,581 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,581 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,582 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,582 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,582 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,582 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,582 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,582 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,582 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,582 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,583 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:50,583 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,584 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:50,584 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,584 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,584 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,584 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,584 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,585 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,585 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,585 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,585 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,595 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,596 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:50,596 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,596 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:50,597 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:50,597 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,597 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:50,597 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,597 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,597 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,598 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,598 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,598 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,598 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,599 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,600 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,600 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,600 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,600 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,600 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,600 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,600 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,601 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,601 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,601 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,601 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,601 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,601 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,602 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,603 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,603 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,603 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,603 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,603 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,603 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,604 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,604 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,604 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,604 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,604 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,604 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,605 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:50,606 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,606 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:50,606 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:50,606 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,606 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:50,607 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,607 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,607 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,607 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,607 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,607 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,607 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,608 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,611 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scanorama' -== 2023-01-23 15:13:50,611 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:50,611 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:50,611 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:50,611 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:50,613 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-23 15:13:50,614 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-23 15:13:50,614 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-23 15:13:50,614 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-23 15:13:50,615 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-23 15:13:50,616 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-23 15:13:50,617 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-23 15:13:50,617 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-23 15:13:50,618 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-23 15:13:50,618 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-23 15:13:50,618 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('R', '4.2.1'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('python-dateutil', '2.8.2'), - ('click', '8.1.3'), - ('cryptography', '39.0.0'), - ('hatchling', '1.12.2'), - ('anndata2ri', '1.1', { - }), - ('trvaep', '0.1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('llvmlite', '0.39.1', { - 'preinstallopts': local_llvmlite_preinstallopts, - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - ('scanorama', '1.7.3'), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-23 15:13:50,619 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-23 15:13:50,619 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('R', '4.2.1'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13')] (type: ) -== 2023-01-23 15:13:50,619 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('python-dateutil', '2.8.2'), ('click', '8.1.3'), ('cryptography', '39.0.0'), ('hatchling', '1.12.2'), ('anndata2ri', '1.1', {}), ('trvaep', '0.1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('llvmlite', '0.39.1', {'preinstallopts': 'export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ', 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], 'checksums': [{'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}]}), ('scanorama', '1.7.3'), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-23 15:13:50,620 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-23 15:13:50,621 easyconfig.py:1688 INFO Generating template values... -== 2023-01-23 15:13:50,647 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-23 15:13:50,647 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-23 15:13:50,647 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-23 15:13:50,649 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-23 15:13:50,649 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,649 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-23 15:13:50,649 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-23 15:13:50,649 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,649 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-23 15:13:50,650 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,650 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,650 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,650 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,650 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,650 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,651 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,651 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,651 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,651 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,652 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-23 15:13:50,652 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,652 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-23 15:13:50,652 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,652 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,653 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,653 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,653 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,653 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,653 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,653 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,654 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,654 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,655 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-23 15:13:50,655 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,656 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-23 15:13:50,656 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,656 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,656 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,656 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,656 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,657 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,657 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,657 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,657 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,670 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,670 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,671 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,671 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,671 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,671 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,672 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-23 15:13:50,672 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,673 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-23 15:13:50,673 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,673 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,673 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,673 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,673 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,674 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,674 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,674 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,674 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,674 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,675 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-23 15:13:50,675 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,675 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-23 15:13:50,676 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-23 15:13:50,676 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,676 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-23 15:13:50,676 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,676 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,676 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,676 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,676 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,677 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,677 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,678 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-23 15:13:50,678 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,679 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-23 15:13:50,679 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-23 15:13:50,679 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,679 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-23 15:13:50,679 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,679 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,679 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,679 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,680 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,680 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,680 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,692 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-23 15:13:50,692 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,692 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-23 15:13:50,692 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-23 15:13:50,692 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,693 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-23 15:13:50,693 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-23 15:13:50,693 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,693 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-23 15:13:50,694 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,694 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,694 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,695 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-23 15:13:50,696 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-23 15:13:50,696 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,696 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-23 15:13:50,696 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,696 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,697 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,697 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,697 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,697 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,698 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,698 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,698 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,698 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,699 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,699 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,699 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-23 15:13:50,700 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,700 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-23 15:13:50,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,700 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,700 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-23 15:13:50,701 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-23 15:13:50,701 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,702 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-23 15:13:50,702 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,702 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-23 15:13:50,702 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-23 15:13:50,702 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,702 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-23 15:13:50,703 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,703 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,703 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,703 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,703 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,703 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,703 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,704 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-23 15:13:50,704 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,705 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-23 15:13:50,705 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,705 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,705 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,705 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,705 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,706 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,706 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,706 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,706 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,706 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,707 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-23 15:13:50,707 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,707 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-23 15:13:50,707 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,707 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,708 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,708 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,708 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,708 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,708 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,708 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,709 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,709 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,710 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,710 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,710 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,710 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,710 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,710 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,710 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,711 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,711 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,711 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,711 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,711 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,712 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,713 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-23 15:13:50,714 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,714 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-23 15:13:50,714 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-23 15:13:50,714 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,714 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-23 15:13:50,714 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,715 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,715 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,715 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,715 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,715 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,715 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,717 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-23 15:13:50,717 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,717 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-23 15:13:50,717 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,717 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,717 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,718 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,718 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,718 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,718 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,718 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,718 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,719 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,720 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-23 15:13:50,720 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,720 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-23 15:13:50,720 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-23 15:13:50,720 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,721 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-23 15:13:50,721 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,721 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,721 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,721 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,721 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,722 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,722 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,722 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,722 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,722 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,722 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,722 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,755 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-23 15:13:50,755 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,755 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-23 15:13:50,755 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-23 15:13:50,755 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,755 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-23 15:13:50,756 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,756 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,756 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,756 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,756 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,756 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,757 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,758 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-23 15:13:50,758 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,758 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-23 15:13:50,758 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,758 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,759 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,759 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,759 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,759 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,759 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,759 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,760 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,760 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,761 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-23 15:13:50,761 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,761 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-23 15:13:50,761 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-23 15:13:50,761 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,761 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-23 15:13:50,762 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-23 15:13:50,762 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,762 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-23 15:13:50,762 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,762 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,762 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,762 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,762 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,763 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-23 15:13:50,764 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,764 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,764 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,764 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,764 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,765 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,765 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,765 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,765 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,765 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,765 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,766 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,766 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,767 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-23 15:13:50,767 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,767 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-23 15:13:50,767 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-23 15:13:50,767 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,767 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-23 15:13:50,767 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,768 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,768 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,768 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,768 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,768 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,768 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,769 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-23 15:13:50,769 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,769 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-23 15:13:50,770 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-23 15:13:50,770 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,770 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-23 15:13:50,770 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-23 15:13:50,770 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,770 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-23 15:13:50,770 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-23 15:13:50,770 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-23 15:13:50,771 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-23 15:13:50,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-23 15:13:50,771 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-23 15:13:50,774 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scib_pipeline' -== 2023-01-23 15:13:50,774 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-23 15:13:50,775 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-4q2r7gcu (previous value: '/tmp/vsc43810/eb-4q2r7gcu') -== 2023-01-23 15:13:50,775 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-4q2r7gcu as pip cache directory -== 2023-01-23 15:13:50,775 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-23 15:13:52,827 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-23 15:13:52,827 easyblock.py:1852 INFO Starting extension anndata -== 2023-01-23 15:13:52,828 build_log.py:267 INFO installing extension anndata 0.8.0 (1/12)... -== 2023-01-23 15:13:54,866 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:13:54,866 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:13:59,992 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:13:59,995 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-23 15:13:59,997 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-23 15:14:00,009 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-23 15:14:00,014 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,054 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,055 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,056 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-23 15:14:00,057 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,058 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,059 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,060 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,061 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-23 15:14:00,062 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-23 15:14:00,063 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-23 15:14:00,064 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-23 15:14:00,103 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,104 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-23 15:14:00,105 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,106 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-23 15:14:00,107 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:00,107 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:00,107 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-23 15:14:01,197 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-23 15:14:02,107 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:14:02,113 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-23 15:14:02,360 build_log.py:267 INFO configuring... -== 2023-01-23 15:14:02,363 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-23 15:14:02,363 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-23 15:14:02,592 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-23 15:14:02,592 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-23 15:14:02,592 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-23 15:14:02,910 build_log.py:267 INFO building... -== 2023-01-23 15:14:02,914 build_log.py:267 INFO testing... -== 2023-01-23 15:14:02,917 build_log.py:267 INFO installing... -== 2023-01-23 15:14:02,932 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:14:02,943 environment.py:93 INFO Environment variable PYTHONPATH set to 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(previous value: 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-== 2023-01-23 15:14:02,944 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-23 15:14:02,944 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-23 15:14:02,944 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-23 15:14:13,522 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-23 15:14:13,522 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-23 15:14:13,529 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-23 15:14:25,817 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata/anndata-0.8.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata - Building wheel for anndata (pyproject.toml): started - Building wheel for anndata (pyproject.toml): finished with status 'done' - Created wheel for anndata: filename=anndata-0.8.0-py3-none-any.whl size=96088 sha256=2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e - Stored in directory: /tmp/vsc43810/eb-4q2r7gcu/pip/wheels/94/11/1a/a47764057948cf4860f716a8020c41e1d6213fcb0c390ad796 -Successfully built anndata -Installing collected packages: anndata -Successfully installed anndata-0.8.0 - -== 2023-01-23 15:14:25,817 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-23 15:14:25,818 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-23 15:14:25,818 build_log.py:267 INFO ... (took 32 secs) -== 2023-01-23 15:14:25,821 easyblock.py:1852 INFO Starting extension python-dateutil -== 2023-01-23 15:14:25,821 build_log.py:267 INFO installing extension python-dateutil 2.8.2 (2/12)... -== 2023-01-23 15:14:27,851 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:14:27,851 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:14:27,851 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:14:27,877 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-23 15:14:27,879 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-23 15:14:27,903 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-23 15:14:27,909 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,910 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,911 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,912 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,913 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:27,914 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:27,915 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,916 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:14:27,917 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:14:27,918 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:14:27,919 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:14:27,920 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,921 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:14:27,922 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,923 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:27,924 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:27,924 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:27,925 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-23 15:14:29,956 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-23 15:14:31,083 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/pythondateutil (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:14:31,088 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/python-dateutil-2.8.2.tar.gz -== 2023-01-23 15:14:31,558 build_log.py:267 INFO configuring... -== 2023-01-23 15:14:31,561 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-23 15:14:31,561 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-23 15:14:31,817 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-23 15:14:31,817 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-23 15:14:31,817 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-23 15:14:32,089 build_log.py:267 INFO building... -== 2023-01-23 15:14:32,093 build_log.py:267 INFO testing... -== 2023-01-23 15:14:32,096 build_log.py:267 INFO installing... -== 2023-01-23 15:14:32,099 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-23 15:14:32,099 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-23 15:14:32,099 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-23 15:14:32,100 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-23 15:14:33,496 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-23 15:14:33,497 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-23 15:14:33,503 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-23 15:14:52,139 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/pythondateutil/python-dateutil-2.8.2 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: python-dateutil - Building wheel for python-dateutil (pyproject.toml): started - Building wheel for python-dateutil (pyproject.toml): finished with status 'done' - Created wheel for python-dateutil: filename=python_dateutil-2.8.2-py2.py3-none-any.whl size=247703 sha256=eec58139f9dbfb94e916a0b17bdc37df3b21088aed2f7158361e4e2bc8b1cfe1 - Stored in directory: /tmp/vsc43810/eb-4q2r7gcu/pip/wheels/b4/d7/39/c7ddcbc50c34259e8e2d505d8ae25a584d5d5d7a996a7c0eb5 -Successfully built python-dateutil -Installing collected packages: python-dateutil -Successfully installed python-dateutil-2.8.2 - -== 2023-01-23 15:14:52,139 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-23 15:14:52,140 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-23 15:14:52,140 build_log.py:267 INFO ... (took 26 secs) -== 2023-01-23 15:14:52,143 easyblock.py:1852 INFO Starting extension click -== 2023-01-23 15:14:52,143 build_log.py:267 INFO installing extension click 8.1.3 (3/12)... -== 2023-01-23 15:14:54,231 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:14:54,231 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:14:54,231 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:14:54,245 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-23 15:14:54,246 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-23 15:14:54,255 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,261 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,262 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:54,263 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,264 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,265 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:54,266 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:14:54,267 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,268 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,269 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:14:54,270 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:14:54,271 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:14:54,272 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:14:54,273 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,274 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:14:54,275 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,276 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:14:54,276 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,276 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:14:54,277 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:54,277 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:14:54,277 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-23 15:14:55,397 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-23 15:14:56,474 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/click (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:14:56,479 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/click-8.1.3.tar.gz -== 2023-01-23 15:14:56,770 build_log.py:267 INFO configuring... -== 2023-01-23 15:14:56,773 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-23 15:14:56,773 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-23 15:14:56,957 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-23 15:14:56,958 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-23 15:14:56,958 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-23 15:14:57,243 build_log.py:267 INFO building... -== 2023-01-23 15:14:57,247 build_log.py:267 INFO testing... -== 2023-01-23 15:14:57,250 build_log.py:267 INFO installing... -== 2023-01-23 15:14:57,253 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-23 15:14:57,253 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-23 15:14:57,253 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-23 15:14:57,254 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-23 15:14:58,687 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-23 15:14:58,687 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-23 15:14:58,693 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-23 15:15:15,718 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/click/click-8.1.3 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: click - Building wheel for click (setup.py): started - Building wheel for click (setup.py): finished with status 'done' - Created wheel for click: filename=click-8.1.3-py3-none-any.whl size=96588 sha256=0068c243a25f0d6388b22db63033a9d7d221342f3f169fddbe9d6c18dd0664a6 - Stored in directory: /tmp/vsc43810/eb-4q2r7gcu/pip/wheels/68/3d/ca/9a4cac99ae7c930b0df43446c56aa2588fdf36e0ae2d0b29f6 -Successfully built click -Installing collected packages: click -Successfully installed click-8.1.3 - -== 2023-01-23 15:15:15,719 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-23 15:15:15,719 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-23 15:15:15,719 build_log.py:267 INFO ... (took 23 secs) -== 2023-01-23 15:15:15,722 easyblock.py:1852 INFO Starting extension cryptography -== 2023-01-23 15:15:15,722 build_log.py:267 INFO installing extension cryptography 39.0.0 (4/12)... -== 2023-01-23 15:15:17,902 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-23 15:15:17,903 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-23 15:15:17,903 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-23 15:15:17,904 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-23 15:15:17,905 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-23 15:15:17,918 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-23 15:15:17,925 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,925 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,925 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,925 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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15:15:17,926 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,926 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,927 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,927 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,927 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to 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-I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,927 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,927 environment.py:93 INFO Environment variable CXX set to g++ (previous 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EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,928 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:15:17,929 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-23 15:15:17,930 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,931 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-23 15:15:17,932 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-23 15:15:17,933 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-23 15:15:17,934 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:15:17,935 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,936 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-23 15:15:17,937 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:15:17,987 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:15:17,988 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-23 15:15:17,989 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,989 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-23 15:15:17,989 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,989 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-23 15:15:17,990 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:15:17,990 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-23 15:15:17,991 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-23 15:15:19,084 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-23 15:15:20,115 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/cryptography (parents: True, set_gid: False, sticky: False) -== 2023-01-23 15:15:20,120 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/cryptography-39.0.0.tar.gz -== 2023-01-23 15:15:20,417 build_log.py:267 INFO configuring... -== 2023-01-23 15:15:20,421 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-23 15:15:20,421 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-23 15:15:20,630 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-23 15:15:20,630 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro 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-== 2023-01-23 15:15:20,891 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-23 15:15:20,891 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-23 15:15:20,891 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-23 15:15:22,157 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-23 15:15:22,157 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-23 15:15:22,163 run.py:236 INFO running cmd: CFLAGS="$CFLAGS -pthread" /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-23 15:15:38,843 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd "CFLAGS="$CFLAGS -pthread" /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 1 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/cryptography/cryptography-39.0.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: cryptography - Building wheel for cryptography (pyproject.toml): started - Building wheel for cryptography (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Building wheel for cryptography (pyproject.toml) did not run successfully. - exit code: 1 - > [166 lines of output] - running bdist_wheel - running build - running build_py - creating build - creating build/lib.linux-x86_64-cpython-310 - creating build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/exceptions.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/__about__.py -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/fernet.py -> build/lib.linux-x86_64-cpython-310/cryptography - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat - copying src/cryptography/hazmat/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat - copying src/cryptography/hazmat/_oid.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat - creating build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/certificate_transparency.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/oid.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/general_name.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/name.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/extensions.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - copying src/cryptography/x509/ocsp.py -> build/lib.linux-x86_64-cpython-310/cryptography/x509 - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/constant_time.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_serialization.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/padding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/hashes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/poly1305.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/keywrap.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/cmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_cipheralgorithm.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/_asymmetric.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - copying src/cryptography/hazmat/primitives/hmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - copying src/cryptography/hazmat/bindings/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends - copying src/cryptography/hazmat/backends/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/pkcs7.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/ssh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - copying src/cryptography/hazmat/primitives/serialization/pkcs12.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/serialization - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/algorithms.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/modes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/aead.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - copying src/cryptography/hazmat/primitives/ciphers/base.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/ciphers - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/totp.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - copying src/cryptography/hazmat/primitives/twofactor/hotp.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/twofactor - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/types.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/x25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ec.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/padding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ed25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/dsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/dh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/rsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/ed448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - copying src/cryptography/hazmat/primitives/asymmetric/x448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/asymmetric - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/scrypt.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/pbkdf2.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/kbkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/x963kdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/hkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - copying src/cryptography/hazmat/primitives/kdf/concatkdf.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/primitives/kdf - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/binding.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - copying src/cryptography/hazmat/bindings/openssl/_conditional.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/openssl - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/utils.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/decode_asn1.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/__init__.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/x25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ec.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/backend.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ed25519.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/hashes.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/aead.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/poly1305.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ciphers.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/cmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/dsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/dh.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/rsa.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/ed448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/x448.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - copying src/cryptography/hazmat/backends/openssl/hmac.py -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/backends/openssl - running egg_info - writing src/cryptography.egg-info/PKG-INFO - writing dependency_links to src/cryptography.egg-info/dependency_links.txt - writing requirements to src/cryptography.egg-info/requires.txt - writing top-level names to src/cryptography.egg-info/top_level.txt - listing git files failed - pretending there aren't any - reading manifest file 'src/cryptography.egg-info/SOURCES.txt' - reading manifest template 'MANIFEST.in' - no previously-included directories found matching 'docs/_build' - warning: no previously-included files found matching 'vectors' - warning: no previously-included files matching '*' found under directory 'vectors' - warning: no previously-included files matching '*' found under directory '.github' - warning: no previously-included files found matching 'release.py' - warning: no previously-included files found matching '.readthedocs.yml' - warning: no previously-included files found matching 'dev-requirements.txt' - warning: no previously-included files found matching 'tox.ini' - warning: no previously-included files found matching 'mypy.ini' - warning: no previously-included files matching '*' found under directory '.circleci' - adding license file 'LICENSE' - adding license file 'LICENSE.APACHE' - adding license file 'LICENSE.BSD' - adding license file 'LICENSE.PSF' - writing manifest file 'src/cryptography.egg-info/SOURCES.txt' - copying src/cryptography/py.typed -> build/lib.linux-x86_64-cpython-310/cryptography - copying src/cryptography/hazmat/bindings/_openssl.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings - creating build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/__init__.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/asn1.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/ocsp.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/pkcs7.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - copying src/cryptography/hazmat/bindings/_rust/x509.pyi -> build/lib.linux-x86_64-cpython-310/cryptography/hazmat/bindings/_rust - running build_ext - running build_rust - - =============================DEBUG ASSISTANCE============================= - If you are seeing a compilation error please try the following steps to - successfully install cryptography: - 1) Upgrade to the latest pip and try again. This will fix errors for most - users. See: https://pip.pypa.io/en/stable/installing/#upgrading-pip - 2) Read https://cryptography.io/en/latest/installation/ for specific - instructions for your platform. - 3) Check our frequently asked questions for more information: - https://cryptography.io/en/latest/faq/ - 4) Ensure you have a recent Rust toolchain installed: - https://cryptography.io/en/latest/installation/#rust - - Python: 3.10.4 - platform: Linux-4.18.0-372.36.1.el8_6.x86_64-x86_64-with-glibc2.28 - pip: 22.0.4 - setuptools: 62.1.0 - setuptools_rust: 1.3.0 - rustc: n/a - =============================DEBUG ASSISTANCE============================= - - error: can't find Rust compiler - - If you are using an outdated pip version, it is possible a prebuilt wheel is available for this package but pip is not able to install from it. Installing from the wheel would avoid the need for a Rust compiler. - - To update pip, run: - - pip install --upgrade pip - - and then retry package installation. - - If you did intend to build this package from source, try installing a Rust compiler from your system package manager and ensure it is on the PATH during installation. Alternatively, rustup (available at https://rustup.rs) is the recommended way to download and update the Rust compiler toolchain. - - This package requires Rust >=1.48.0. - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. - ERROR: Failed building wheel for cryptography -Failed to build cryptography -ERROR: Could not build wheels for cryptography, which is required to install pyproject.toml-based projects - (at easybuild/easybuild-framework/easybuild/tools/run.py:643 in parse_cmd_output) -== 2023-01-23 15:15:38,844 build_log.py:267 INFO ... (took 23 secs) -== 2023-01-23 15:15:38,847 build_log.py:267 INFO ... (took 2 mins 17 secs) -== 2023-01-23 15:15:38,850 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-23 15:15:38,861 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock successfully removed. -== 2023-01-23 15:15:38,861 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-23 15:15:38,862 easyblock.py:4208 WARNING build failed (first 300 chars): cmd "CFLAGS="$CFLAGS -pthread" /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." ex -== 2023-01-23 15:15:38,862 easyblock.py:328 INFO Closing log for application name scib-pipeline version 0.2.0 diff --git a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230126.173338.JyAdA.log b/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230126.173338.JyAdA.log deleted file mode 100644 index bbdeeaf7..00000000 --- a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230126.173338.JyAdA.log +++ /dev/null @@ -1,10127 +0,0 @@ -== 2023-01-26 17:33:38,965 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host node3703.slaking.os. -== 2023-01-26 17:33:38,965 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-26 17:33:38,966 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-26 17:33:38,966 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-26 17:33:38,966 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:33:38,966 easyblock.py:288 INFO Init completed for application name scib-pipeline version 0.2.0 -== 2023-01-26 17:33:38,967 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-26 17:33:38,967 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/scib-pipeline'], 'options': {}} -== 2023-01-26 17:33:38,968 easyblock.py:4151 INFO Obtained application instance of for scib-pipeline (easyblock: PythonBundle) -== 2023-01-26 17:33:38,968 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:38,969 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:38,969 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:38,970 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:38,976 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-26 17:33:38,978 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789 (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:33:38,979 easyblock.py:4405 INFO Dumped easyconfig instance to /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/scib-pipeline-0.2.0-foss-2022a.eb -== 2023-01-26 17:33:38,981 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/easyblocks (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:33:38,988 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/easyblocks/pythonbundle.py -== 2023-01-26 17:33:38,988 easyblock.py:4385 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/easyblocks -== 2023-01-26 17:33:38,996 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/easyblocks/bundle.py -== 2023-01-26 17:33:38,996 easyblock.py:4385 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc43810/eb-a0cn2933/reprod_20230126173338_1599789/easyblocks -== 2023-01-26 17:33:38,999 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1 -== 2023-01-26 17:33:39,001 build_log.py:267 INFO building and installing scib-pipeline/0.2.0-foss-2022a... -== 2023-01-26 17:33:39,015 filetools.py:2011 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock does not exist -== 2023-01-26 17:33:39,015 filetools.py:1952 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-26 17:33:39,016 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:33:39,017 filetools.py:1961 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-26 17:33:39,017 build_log.py:267 INFO fetching files... -== 2023-01-26 17:33:39,023 easyblock.py:3877 INFO Starting fetch step -== 2023-01-26 17:33:39,023 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:39,024 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:39,024 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:39,025 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:39,025 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-26 17:33:39,025 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-26 17:33:39,026 easyblock.py:2327 INFO no sources provided -== 2023-01-26 17:33:39,026 easyblock.py:2342 INFO no patches provided -== 2023-01-26 17:33:39,027 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata-0.8.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,027 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,028 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,029 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,042 easyblock.py:844 INFO Found file anndata-0.8.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-26 17:33:39,080 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: ef1130964bcb6c3ca3ed161b74e46a06 -== 2023-01-26 17:33:39,082 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: 94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e -== 2023-01-26 17:33:39,082 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,082 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,083 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,083 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,587 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/s/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/s/scib-pipeline/checksums.json, /apps/gent/sources/scib-pipeline/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-26 17:33:39,587 easyblock.py:685 INFO Checksum for extension source anndata-0.8.0.tar.gz verified -== 2023-01-26 17:33:39,587 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,588 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata2ri-1.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,588 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,589 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,589 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,591 easyblock.py:844 INFO Found file anndata2ri-1.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-26 17:33:39,606 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: 8145ef2c660bd7cba7b2cf10b027295e -== 2023-01-26 17:33:39,607 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: bf5e5d5184efe49eb00f7d524225a9867e3dd77c6ed291eb251168fe4dc429e7 -== 2023-01-26 17:33:39,608 easyblock.py:685 INFO Checksum for extension source anndata2ri-1.1.tar.gz verified -== 2023-01-26 17:33:39,608 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,609 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for get_version-3.5.4.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,609 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,609 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,610 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,611 easyblock.py:844 INFO Found file get_version-3.5.4.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-26 17:33:39,631 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 164c51221bd5aa2281c59c68d48a05a4 -== 2023-01-26 17:33:39,631 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 5901c846518d55d52c1f6f037f5d2433952b46bbf36e38c52f064ae836556343 -== 2023-01-26 17:33:39,632 easyblock.py:685 INFO Checksum for extension source get_version-3.5.4.tar.gz verified -== 2023-01-26 17:33:39,632 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,633 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,633 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,633 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,634 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,636 easyblock.py:844 INFO Found file trvaep-0.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-26 17:33:39,673 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: df09bb666d1db2ad1190f3e718586a9f -== 2023-01-26 17:33:39,681 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: e4ee8e823e67e4f11b23cdf408d900f7aba9f31449eeeb54e5bbc8aa84dfc811 -== 2023-01-26 17:33:39,682 easyblock.py:685 INFO Checksum for extension source trvaep-0.1.0.tar.gz verified -== 2023-01-26 17:33:39,682 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,683 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for annoy-1.17.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,683 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,683 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,684 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,685 easyblock.py:844 INFO Found file annoy-1.17.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-26 17:33:39,714 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: 5b7239c506f3f09b6fffd7caea8a7adf -== 2023-01-26 17:33:39,725 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: bf177dbeafb81f63b2ac1e1246b1f26a2acc82e73ba46638734d29d8258122da -== 2023-01-26 17:33:39,726 easyblock.py:685 INFO Checksum for extension source annoy-1.17.1.tar.gz verified -== 2023-01-26 17:33:39,726 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,727 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for geosketch-1.2.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,727 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,727 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,728 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,730 easyblock.py:844 INFO Found file geosketch-1.2.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-26 17:33:39,748 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: 792544b199cb93521903d77d7ae6dace -== 2023-01-26 17:33:39,749 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: bbfe97366b91c5927b6076d5a6738d9cfbe094efb5ac1117aab7a30b6081cc4e -== 2023-01-26 17:33:39,750 easyblock.py:685 INFO Checksum for extension source geosketch-1.2.tar.gz verified -== 2023-01-26 17:33:39,750 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,751 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for fbpca-1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,751 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,751 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,752 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,753 easyblock.py:844 INFO Found file fbpca-1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-26 17:33:39,770 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 8312632180ca9853201400914a75d5e4 -== 2023-01-26 17:33:39,770 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 150677642479663f317fdbb5e06dab3f98721cf7031bb4a84113d7a631c472d1 -== 2023-01-26 17:33:39,771 easyblock.py:685 INFO Checksum for extension source fbpca-1.0.tar.gz verified -== 2023-01-26 17:33:39,771 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,772 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scgen-2.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,772 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,772 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,773 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,775 easyblock.py:844 INFO Found file scgen-2.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-26 17:33:39,803 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 536ec702d840c41f81e1b6c2200c6718 -== 2023-01-26 17:33:39,804 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 0f3f23ee596b20906c22b6a324ca930b70b78c93e18d9c1846214ee84ab872bf -== 2023-01-26 17:33:39,804 easyblock.py:685 INFO Checksum for extension source scgen-2.1.0.tar.gz verified -== 2023-01-26 17:33:39,804 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,805 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for bbknn-1.5.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,805 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,806 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,806 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,808 easyblock.py:844 INFO Found file bbknn-1.5.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-26 17:33:39,828 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 9776fdf80cf3e15ef9fb307ab36be6f0 -== 2023-01-26 17:33:39,829 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 16da9c778ddfe363f8a3fa0d72707694d2217f94d3a87482336e8a2c6beb2160 -== 2023-01-26 17:33:39,829 easyblock.py:685 INFO Checksum for extension source bbknn-1.5.1.tar.gz verified -== 2023-01-26 17:33:39,830 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,830 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scanorama-1.7.3.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,831 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,831 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,832 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,836 easyblock.py:844 INFO Found file scanorama-1.7.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-26 17:33:39,854 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: f0f5d506bcfe7ca8d19efa47fe9ee4fe -== 2023-01-26 17:33:39,855 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: e1d1cdd6855b3a302f6e9e3160442a9998113e5118ac48c71bf8a21760a657b7 -== 2023-01-26 17:33:39,856 easyblock.py:685 INFO Checksum for extension source scanorama-1.7.3.tar.gz verified -== 2023-01-26 17:33:39,856 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,857 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for memory-profiler-0.61.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,857 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,857 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,858 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,859 easyblock.py:844 INFO Found file memory-profiler-0.61.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-26 17:33:39,878 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 5fe93d5035288095c4f86ef69ee19f37 -== 2023-01-26 17:33:39,879 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 4e5b73d7864a1d1292fb76a03e82a3e78ef934d06828a698d9dada76da2067b0 -== 2023-01-26 17:33:39,879 easyblock.py:685 INFO Checksum for extension source memory-profiler-0.61.0.tar.gz verified -== 2023-01-26 17:33:39,879 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:39,880 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.2.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-26 17:33:39,881 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-26 17:33:39,881 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-26 17:33:39,881 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-26 17:33:39,883 easyblock.py:844 INFO Found file 0.2.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-26 17:33:40,472 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: ed1e3a1e7b718dc7f72babd02939d635 -== 2023-01-26 17:33:40,980 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: d2700e0f9c9bc2ee2a1d96a91f05448abd7c9ccd83208da42aaac53724f2f772 -== 2023-01-26 17:33:40,981 easyblock.py:685 INFO Checksum for extension source 0.2.0.tar.gz verified -== 2023-01-26 17:33:40,981 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-26 17:33:40,981 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline'] -== 2023-01-26 17:33:40,984 build_log.py:267 INFO ... (took 1 secs) -== 2023-01-26 17:33:40,987 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-26 17:33:40,990 easyblock.py:3877 INFO Starting ready step -== 2023-01-26 17:33:40,990 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:40,991 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:40,991 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:40,991 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:40,991 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-26 17:33:40,999 run.py:236 INFO running cmd: ulimit -u -== 2023-01-26 17:33:41,007 easyblock.py:2196 INFO Setting parallelism: 8 -== 2023-01-26 17:33:41,113 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-26 17:33:41,114 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-26 17:33:41,115 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:33:41,123 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-26 17:33:41,124 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-26 17:33:41,124 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:41,125 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:41,125 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:41,126 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:41,126 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:33:41,133 build_log.py:267 INFO unpacking... -== 2023-01-26 17:33:41,139 easyblock.py:3877 INFO Starting source step -== 2023-01-26 17:33:41,139 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:41,140 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:41,140 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:41,140 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:41,141 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-26 17:33:41,141 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-26 17:33:41,141 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:33:41,147 build_log.py:267 INFO patching... -== 2023-01-26 17:33:41,153 easyblock.py:3877 INFO Starting patch step -== 2023-01-26 17:33:41,154 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:41,154 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:41,154 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:41,155 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:41,155 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-26 17:33:41,155 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:33:41,161 build_log.py:267 INFO preparing... -== 2023-01-26 17:33:41,168 easyblock.py:3877 INFO Starting prepare step -== 2023-01-26 17:33:41,168 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:33:41,168 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:33:41,169 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:33:41,169 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:33:41,169 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-26 17:33:41,174 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:33:41,174 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-26 17:33:41,174 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-26 17:33:41,175 modules.py:628 INFO Checking whether PyTorch/1.12.0-foss-2022a exists... -== 2023-01-26 17:33:41,175 modules.py:633 INFO Module PyTorch/1.12.0-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,175 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-foss-2022a module: True -== 2023-01-26 17:33:41,175 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-26 17:33:41,175 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,176 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-26 17:33:41,176 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists... -== 2023-01-26 17:33:41,176 modules.py:633 INFO Module R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists (found in list of available modules) -== 2023-01-26 17:33:41,176 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 module: True -== 2023-01-26 17:33:41,176 modules.py:628 INFO Checking whether R/4.2.1-foss-2022a exists... -== 2023-01-26 17:33:41,177 modules.py:633 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,177 modules.py:656 INFO Result for existence check of R/4.2.1-foss-2022a module: True -== 2023-01-26 17:33:41,177 modules.py:628 INFO Checking whether scib/1.1.1-foss-2022a exists... -== 2023-01-26 17:33:41,177 modules.py:633 INFO Module scib/1.1.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,178 modules.py:656 INFO Result for existence check of scib/1.1.1-foss-2022a module: True -== 2023-01-26 17:33:41,178 modules.py:628 INFO Checking whether scikit-learn/1.1.2-foss-2022a exists... -== 2023-01-26 17:33:41,178 modules.py:633 INFO Module scikit-learn/1.1.2-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,178 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-foss-2022a module: True -== 2023-01-26 17:33:41,178 modules.py:628 INFO Checking whether scikit-misc/0.1.4-foss-2022a exists... -== 2023-01-26 17:33:41,179 modules.py:633 INFO Module scikit-misc/0.1.4-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,179 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-foss-2022a module: True -== 2023-01-26 17:33:41,179 modules.py:628 INFO Checking whether rpy2/3.5.7-foss-2022a exists... -== 2023-01-26 17:33:41,179 modules.py:633 INFO Module rpy2/3.5.7-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,180 modules.py:656 INFO Result for existence check of rpy2/3.5.7-foss-2022a module: True -== 2023-01-26 17:33:41,180 modules.py:628 INFO Checking whether snakemake/7.20.0-foss-2022a exists... -== 2023-01-26 17:33:41,180 modules.py:633 INFO Module snakemake/7.20.0-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,180 modules.py:656 INFO Result for existence check of snakemake/7.20.0-foss-2022a module: True -== 2023-01-26 17:33:41,181 modules.py:628 INFO Checking whether networkx/2.8.4-foss-2022a exists... -== 2023-01-26 17:33:41,181 modules.py:633 INFO Module networkx/2.8.4-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,181 modules.py:656 INFO Result for existence check of networkx/2.8.4-foss-2022a module: True -== 2023-01-26 17:33:41,181 modules.py:628 INFO Checking whether ICU/71.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:33:41,181 modules.py:633 INFO Module ICU/71.1-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-26 17:33:41,182 modules.py:656 INFO Result for existence check of ICU/71.1-GCCcore-11.3.0 module: True -== 2023-01-26 17:33:41,182 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:33:41,182 modules.py:633 INFO Module Graphviz/5.0.0-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-26 17:33:41,182 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCCcore-11.3.0 module: True -== 2023-01-26 17:33:41,182 modules.py:628 INFO Checking whether GSL/2.7-GCC-11.3.0 exists... -== 2023-01-26 17:33:41,183 modules.py:633 INFO Module GSL/2.7-GCC-11.3.0 exists (found in list of available modules) -== 2023-01-26 17:33:41,183 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-11.3.0 module: True -== 2023-01-26 17:33:41,183 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-26 17:33:41,183 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,184 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-26 17:33:41,184 modules.py:628 INFO Checking whether numba/0.56.4-foss-2022a exists... -== 2023-01-26 17:33:41,184 modules.py:633 INFO Module numba/0.56.4-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,184 modules.py:656 INFO Result for existence check of numba/0.56.4-foss-2022a module: True -== 2023-01-26 17:33:41,184 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-26 17:33:41,185 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,185 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-26 17:33:41,185 modules.py:628 INFO Checking whether h5py/3.7.0-foss-2022a exists... -== 2023-01-26 17:33:41,185 modules.py:633 INFO Module h5py/3.7.0-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,186 modules.py:656 INFO Result for existence check of h5py/3.7.0-foss-2022a module: True -== 2023-01-26 17:33:41,186 modules.py:628 INFO Checking whether leidenalg/0.9.1-foss-2022a exists... -== 2023-01-26 17:33:41,186 modules.py:633 INFO Module leidenalg/0.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,186 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-foss-2022a module: True -== 2023-01-26 17:33:41,186 modules.py:628 INFO Checking whether umap-learn/0.5.3-foss-2022a exists... -== 2023-01-26 17:33:41,187 modules.py:633 INFO Module umap-learn/0.5.3-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,187 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-foss-2022a module: True -== 2023-01-26 17:33:41,187 modules.py:628 INFO Checking whether pydot/1.4.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:33:41,187 modules.py:633 INFO Module pydot/1.4.2-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-26 17:33:41,188 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCCcore-11.3.0 module: True -== 2023-01-26 17:33:41,188 modules.py:628 INFO Checking whether igraph/0.10.3-foss-2022a exists... -== 2023-01-26 17:33:41,188 modules.py:633 INFO Module igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,188 modules.py:656 INFO Result for existence check of igraph/0.10.3-foss-2022a module: True -== 2023-01-26 17:33:41,188 modules.py:628 INFO Checking whether python-igraph/0.10.3-foss-2022a exists... -== 2023-01-26 17:33:41,189 modules.py:633 INFO Module python-igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,189 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-foss-2022a module: True -== 2023-01-26 17:33:41,189 modules.py:628 INFO Checking whether Deprecated/1.2.13-foss-2022a exists... -== 2023-01-26 17:33:41,189 modules.py:633 INFO Module Deprecated/1.2.13-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,189 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-foss-2022a module: True -== 2023-01-26 17:33:41,190 modules.py:628 INFO Checking whether torchvision/0.13.1-foss-2022a exists... -== 2023-01-26 17:33:41,190 modules.py:633 INFO Module torchvision/0.13.1-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,190 modules.py:656 INFO Result for existence check of torchvision/0.13.1-foss-2022a module: True -== 2023-01-26 17:33:41,190 modules.py:628 INFO Checking whether trvaep/0.1.0-foss-2022a exists... -== 2023-01-26 17:33:41,191 modules.py:633 INFO Module trvaep/0.1.0-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,191 modules.py:656 INFO Result for existence check of trvaep/0.1.0-foss-2022a module: True -== 2023-01-26 17:33:41,191 modules.py:628 INFO Checking whether scvi-tools/0.19.0-foss-2022a exists... -== 2023-01-26 17:33:41,191 modules.py:633 INFO Module scvi-tools/0.19.0-foss-2022a exists (found in list of available modules) -== 2023-01-26 17:33:41,192 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-foss-2022a module: True -== 2023-01-26 17:33:41,192 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:33:41,192 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:33:44,116 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:33:49,744 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-26 17:33:53,193 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib') -== 2023-01-26 17:33:56,026 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-26 17:34:02,726 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-26 17:34:06,570 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCco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(previous value: '/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-26 17:34:13,363 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib') -== 2023-01-26 17:34:27,897 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib') -== 2023-01-26 17:34:41,920 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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well-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib') -== 2023-01-26 17:34:47,042 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-26 17:34:51,820 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/pixman/0.40.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libGLU/9.0.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Mesa/22.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libunwind/1.6.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libglvnd/1.4.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdrm/2.4.110-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib') -== 2023-01-26 17:35:28,949 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/has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(previous value: '/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib') -== 2023-01-26 17:35:53,052 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:35:53,053 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:35:53,053 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:35:53,058 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:35:53,063 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:35:53,098 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:35:53,111 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/include was not found -== 2023-01-26 17:35:53,113 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-26 17:35:53,117 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/include was not found -== 2023-01-26 17:35:53,117 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib64 was not found -== 2023-01-26 17:35:53,117 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib was not found -== 2023-01-26 17:35:53,118 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,121 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,125 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/include was not found -== 2023-01-26 17:35:53,128 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/include was not found -== 2023-01-26 17:35:53,132 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/include was not found -== 2023-01-26 17:35:53,134 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/include was not found -== 2023-01-26 17:35:53,137 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/include was not found -== 2023-01-26 17:35:53,147 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,149 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/include was not found -== 2023-01-26 17:35:53,157 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,161 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/include was not found -== 2023-01-26 17:35:53,164 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,168 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/include was not found -== 2023-01-26 17:35:53,173 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/include was not found -== 2023-01-26 17:35:53,192 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/include was not found -== 2023-01-26 17:35:53,195 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/include was not found -== 2023-01-26 17:35:53,197 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/include was not found -== 2023-01-26 17:35:53,199 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/include was not found -== 2023-01-26 17:35:53,210 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,211 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,211 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,211 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,212 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,212 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,212 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,212 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,213 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,213 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,213 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,213 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,214 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,214 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,214 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,214 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,215 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,215 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,215 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,215 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,216 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,216 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,216 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,216 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,217 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-26 17:35:53,217 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-26 17:35:53,217 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,217 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,218 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,218 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,218 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-26 17:35:53,219 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-26 17:35:53,219 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,219 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,219 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,220 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,220 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,220 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,220 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,221 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,221 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-26 17:35:53,221 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-26 17:35:53,221 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,222 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,222 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,222 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,222 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,223 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,223 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,223 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,223 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:35:53,224 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:35:53,224 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,224 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,224 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:35:53,225 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:35:53,225 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,225 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,225 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,226 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,226 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,226 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,226 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:35:53,227 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:35:53,227 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,227 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,227 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:35:53,228 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:35:53,228 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,228 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,228 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-26 17:35:53,229 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-26 17:35:53,229 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,229 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:35:53,230 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,230 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,230 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,230 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,231 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,231 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,231 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,231 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,232 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,232 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,232 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,232 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-26 17:35:53,233 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,233 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,233 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,233 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,234 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-26 17:35:53,234 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-26 17:35:53,234 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-26 17:35:53,234 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-26 17:35:53,235 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,235 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,235 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,236 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,236 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,236 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,236 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,237 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,237 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-26 17:35:53,237 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-26 17:35:53,237 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,238 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:35:53,238 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-26 17:35:53,238 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-26 17:35:53,238 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:35:53,239 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:35:53,239 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:35:53,239 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:35:53,239 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-26 17:35:53,240 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-26 17:35:53,240 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-26 17:35:53,240 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-26 17:35:53,240 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-26 17:35:53,241 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-26 17:35:53,241 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-26 17:35:53,241 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-26 17:35:53,241 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-26 17:35:53,242 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-26 17:35:53,242 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,242 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:35:53,242 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-26 17:35:53,243 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-26 17:35:53,243 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-26 17:35:53,243 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-26 17:35:53,243 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-26 17:35:53,244 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-26 17:35:53,244 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-26 17:35:53,244 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-26 17:35:53,244 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-26 17:35:53,245 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-26 17:35:53,245 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,245 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,245 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,246 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-26 17:35:53,246 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-26 17:35:53,246 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-26 17:35:53,246 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-26 17:35:53,247 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-26 17:35:53,247 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,247 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-26 17:35:53,248 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-26 17:35:53,248 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-26 17:35:53,248 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-26 17:35:53,248 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-26 17:35:53,249 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,249 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-26 17:35:53,249 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,249 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-26 17:35:53,250 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,250 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:35:53,250 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,250 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:35:53,251 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/ as start dir -== 2023-01-26 17:35:53,256 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:35:53,257 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:35:59,075 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:35:59,777 build_log.py:267 INFO ... (took 2 mins 18 secs) -== 2023-01-26 17:35:59,784 build_log.py:267 INFO configuring... -== 2023-01-26 17:35:59,790 easyblock.py:3877 INFO Starting configure step -== 2023-01-26 17:35:59,790 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:35:59,791 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:35:59,792 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:35:59,792 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:35:59,792 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-26 17:35:59,793 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:35:59,799 build_log.py:267 INFO building... -== 2023-01-26 17:35:59,805 easyblock.py:3877 INFO Starting build step -== 2023-01-26 17:35:59,810 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:35:59,811 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:35:59,811 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:35:59,812 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:35:59,812 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-26 17:35:59,812 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:35:59,818 build_log.py:267 INFO testing... -== 2023-01-26 17:35:59,824 easyblock.py:3877 INFO Starting test step -== 2023-01-26 17:35:59,825 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:35:59,825 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:35:59,825 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:35:59,826 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:35:59,826 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-26 17:35:59,826 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:35:59,832 build_log.py:267 INFO installing... -== 2023-01-26 17:35:59,839 easyblock.py:3877 INFO Starting install step -== 2023-01-26 17:35:59,839 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:35:59,840 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:35:59,840 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:35:59,840 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:35:59,841 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-26 17:35:59,841 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-26 17:35:59,846 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-26 17:36:00,606 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a successfully removed. -== 2023-01-26 17:36:00,607 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-26 17:36:00,607 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:36:00,608 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-26 17:36:00,608 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:36:00,615 build_log.py:267 INFO taking care of extensions... -== 2023-01-26 17:36:00,621 easyblock.py:3877 INFO Starting extensions step -== 2023-01-26 17:36:00,621 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:00,622 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:00,622 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:00,623 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:00,623 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-26 17:36:00,623 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-26 17:36:00,624 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-26 17:36:02,351 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-26 17:36:02,354 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:36:02,354 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/scib-pipeline]==]) -whatis([==[URL: https://github.com/theislab/scib-pipeline]==]) -whatis([==[Extensions: anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a" - -conflict("scib-pipeline") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("PyTorch/1.12.0-foss-2022a") ) then - load("PyTorch/1.12.0-foss-2022a") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") ) then - load("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") -end - -if not ( isloaded("R/4.2.1-foss-2022a") ) then - load("R/4.2.1-foss-2022a") -end - -if not ( isloaded("scib/1.1.1-foss-2022a") ) then - load("scib/1.1.1-foss-2022a") -end - -if not ( isloaded("scikit-learn/1.1.2-foss-2022a") ) then - load("scikit-learn/1.1.2-foss-2022a") -end - -if not ( isloaded("scikit-misc/0.1.4-foss-2022a") ) then - load("scikit-misc/0.1.4-foss-2022a") -end - -if not ( isloaded("rpy2/3.5.7-foss-2022a") ) then - load("rpy2/3.5.7-foss-2022a") -end - -if not ( isloaded("snakemake/7.20.0-foss-2022a") ) then - load("snakemake/7.20.0-foss-2022a") -end - -if not ( isloaded("networkx/2.8.4-foss-2022a") ) then - load("networkx/2.8.4-foss-2022a") -end - -if not ( isloaded("ICU/71.1-GCCcore-11.3.0") ) then - load("ICU/71.1-GCCcore-11.3.0") -end - -if not ( isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTSCIBMINPIPELINE", "anndata-0.8.0,anndata2ri-1.1,get_version-3.5.4,trvaep-0.1.0,annoy-1.17.1,geosketch-1.2,fbpca-1.0,scgen-2.1.0,bbknn-1.5.1,scanorama-1.7.3,memory-profiler-0.61.0,scib-pipeline-0.2.0") - -== 2023-01-26 17:36:02,355 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/vis/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:36:02,356 easyblock.py:3724 INFO Skipping devel module... -== 2023-01-26 17:36:02,356 filetools.py:339 INFO Symlinked 0.2.0-foss-2022a.lua to /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline/default -== 2023-01-26 17:36:02,356 module_generator.py:1489 INFO Module default version file written to point to /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline/default -== 2023-01-26 17:36:09,380 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/438/vsc43810/.local/bin:1;/user/gent/438/vsc43810/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/438/vsc43810/.dotnet/tools:1 (previous value: 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-== 2023-01-26 17:36:09,384 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-26 17:36:09,384 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-26 17:36:09,384 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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-== 2023-01-26 17:36:09,413 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-26 17:36:22,897 easyblock.py:2838 INFO Installing extensions -== 2023-01-26 17:36:22,924 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:22,930 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:22,931 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:22,931 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:22,931 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:22,936 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:22,937 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:22,938 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:22,941 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:22,941 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:22,942 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:22,943 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:22,944 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:22,945 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:22,945 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:22,945 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:22,945 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:22,946 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:22,947 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:22,948 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:22,955 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:22,955 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:22,956 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:28,349 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:28,349 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,352 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:28,352 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:28,353 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,355 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:28,355 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,355 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,357 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,358 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,358 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,360 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,365 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,367 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:28,367 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,370 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:28,371 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,371 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,373 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,373 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,374 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,375 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,376 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,376 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,378 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,379 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,381 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:28,381 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,383 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:28,384 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:28,384 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,386 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:28,386 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,386 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,388 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,389 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,389 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,391 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,391 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,394 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,394 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,396 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,397 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,397 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,399 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,399 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,400 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,402 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,402 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,402 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,404 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,405 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,407 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:28,407 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,409 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:28,410 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,410 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,412 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,412 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,413 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,415 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,415 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,415 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,417 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,418 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,420 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:28,420 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,425 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:28,425 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,426 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,428 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,428 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,428 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,430 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,431 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,431 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,433 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,433 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,436 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,436 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,437 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,437 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,440 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:28,440 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,443 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:28,443 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,443 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,445 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,446 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,446 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,448 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,448 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,449 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,451 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,451 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,453 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:28,453 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,456 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:28,456 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,457 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,459 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,459 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,460 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,462 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,462 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,462 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,464 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,466 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,466 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,467 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,467 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,469 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:28,470 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,472 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:28,473 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,473 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,475 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,475 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,476 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,478 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,478 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,478 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,480 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,484 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,484 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,484 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,487 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:28,487 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,489 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:28,490 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,490 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,492 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,492 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,493 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,495 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,495 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,495 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,497 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,498 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,499 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,499 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,500 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,500 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,500 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,503 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:28,503 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,505 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:28,506 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,506 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,508 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,508 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,509 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,511 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,511 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,511 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,513 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,514 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,516 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:28,516 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,518 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:28,519 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:28,519 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,521 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:28,522 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,529 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,532 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,532 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,532 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,534 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,536 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,537 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,538 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,540 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:28,540 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,543 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:28,543 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:28,544 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,546 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:28,546 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,546 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,548 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,549 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,549 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,551 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,552 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,554 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,556 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,558 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:28,558 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,560 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:28,561 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:28,561 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,563 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:28,564 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,564 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,566 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,566 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,567 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,569 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,569 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,570 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,571 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:28,573 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:28,573 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,576 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:28,576 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,576 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,578 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,579 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,579 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,581 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,582 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,582 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,584 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,585 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,587 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:28,587 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,590 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:28,591 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,591 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,593 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,593 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,594 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,596 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,596 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,596 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,598 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,599 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,601 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,601 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,604 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,604 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,604 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,606 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,607 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,607 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,609 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,610 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,610 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,612 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,613 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,615 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,617 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:28,618 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,620 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:28,620 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,621 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,623 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,623 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,623 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,625 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,625 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,625 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,626 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,626 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,629 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,629 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,630 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,630 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,630 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,631 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,631 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,632 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,632 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,633 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,633 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,633 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,634 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,636 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:28,636 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,637 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:28,637 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,638 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,638 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,639 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,639 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,639 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,640 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,640 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,641 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,641 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,643 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:28,643 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,644 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:28,644 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:28,645 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,645 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:28,646 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,646 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,647 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,647 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,647 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,648 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,648 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,651 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,651 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,653 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,654 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,654 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,655 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,655 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,656 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,656 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,656 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,657 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,657 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,657 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,658 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,658 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,661 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,661 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,661 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,662 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,662 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,663 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,663 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,663 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,664 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,664 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,665 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,665 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,666 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,668 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:28,668 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,669 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:28,669 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:28,669 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,670 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:28,670 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,671 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,671 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,672 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,672 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,672 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,674 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,674 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,675 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,675 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,678 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:28,678 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,679 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:28,679 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,679 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,680 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,680 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,681 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,681 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,682 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,682 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,682 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,683 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,685 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:28,685 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,686 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:28,686 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,687 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,687 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,688 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,688 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,688 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,689 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,689 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,690 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,690 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,693 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,695 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:28,695 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,697 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:28,697 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,697 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,698 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,698 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,698 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,699 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,699 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,700 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,700 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,701 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,701 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,702 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,702 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,703 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,709 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata' -== 2023-01-26 17:36:28,710 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:28,710 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previously undefined) -== 2023-01-26 17:36:28,710 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:28,710 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:28,723 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:28,725 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:28,725 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:28,725 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:28,725 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:28,728 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:28,729 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:28,729 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:28,730 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:28,730 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:28,731 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:28,731 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:28,732 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:28,732 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:28,732 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:28,732 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:28,733 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:28,734 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:28,737 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:28,737 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:28,737 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:28,739 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:28,739 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,739 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:28,740 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:28,740 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,740 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:28,740 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,740 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,741 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,741 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,741 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,741 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,742 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,742 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,743 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:28,744 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,744 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:28,744 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,744 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,745 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,745 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,745 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,745 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,746 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,746 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,746 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,746 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,747 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:28,747 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,748 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:28,748 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:28,748 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,748 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:28,749 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,749 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,749 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,749 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,749 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,750 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,750 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,751 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,751 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,751 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,752 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,752 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,752 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,752 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,752 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,753 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,753 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,753 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,753 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,753 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,754 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:28,755 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,755 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:28,755 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,755 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,756 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,756 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,756 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,756 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,756 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,757 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,757 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,757 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,758 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:28,758 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,759 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:28,759 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,759 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,759 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,759 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,759 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,760 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,760 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,760 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,760 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,761 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,761 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,761 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,761 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,761 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,762 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,763 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:28,763 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,763 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:28,763 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,763 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,764 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,764 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,764 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,764 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,765 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,765 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,765 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,765 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,766 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:28,766 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,767 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:28,767 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,767 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,767 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,768 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,768 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,768 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,768 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,768 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,769 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,769 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,769 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,769 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,769 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,769 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,770 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,771 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:28,771 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,771 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:28,771 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,772 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,772 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,772 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,772 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,772 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,773 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,773 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,773 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,774 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,774 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,774 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,774 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,775 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:28,775 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,776 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:28,776 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,776 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,776 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,777 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,777 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,777 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,777 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,777 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,778 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,779 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,780 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:28,787 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,787 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:28,788 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,788 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,788 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,788 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,788 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,789 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,789 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,789 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,789 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,789 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,790 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:28,791 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,791 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:28,791 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:28,791 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,792 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:28,792 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,792 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,792 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,792 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,792 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,793 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,794 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,795 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:28,795 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,795 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:28,795 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:28,795 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,796 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:28,796 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,796 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,796 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,797 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,797 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,797 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,797 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,797 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,798 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,798 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,798 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,799 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:28,799 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,799 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:28,800 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:28,800 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,800 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:28,800 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,800 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,801 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,801 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,801 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,801 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,801 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,802 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,802 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,802 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:28,803 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:28,803 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,804 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:28,804 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,804 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,804 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,804 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,804 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,805 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,805 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,805 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,805 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,805 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,806 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:28,807 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,807 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:28,807 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,807 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,808 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,808 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,808 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,808 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,808 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,808 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,809 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,809 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,810 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,810 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,810 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,811 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,811 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,811 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,811 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,811 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,812 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,812 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,812 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,812 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,813 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,814 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:28,814 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,815 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:28,815 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,815 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,815 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,815 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,816 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,816 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,816 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,816 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,816 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,817 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,818 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,818 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,818 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,818 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,818 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,819 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,819 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,819 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,819 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,819 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,820 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,820 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,820 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,821 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:28,821 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,821 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:28,822 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,822 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,822 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,822 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,822 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,823 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,823 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,823 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,823 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,823 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,824 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:28,824 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,825 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:28,825 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:28,825 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,825 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:28,826 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,826 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,826 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,826 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,826 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,827 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,828 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,828 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,829 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,829 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,829 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,829 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,829 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,830 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,830 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,830 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,830 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,830 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,831 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,831 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,831 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,832 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,832 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,832 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,833 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,833 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,833 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,833 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,834 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,834 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,834 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,834 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,835 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,835 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,836 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:28,836 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,836 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:28,837 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:28,837 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,837 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:28,837 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,837 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,838 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,838 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,838 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,838 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,838 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,839 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,839 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,839 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,839 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,839 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,841 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:28,841 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,841 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:28,841 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,841 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,842 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,842 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,842 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,842 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,843 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,843 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,843 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,843 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,844 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:28,845 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,845 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:28,845 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,845 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,846 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,846 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,846 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,846 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,846 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,847 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,847 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,847 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,847 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,847 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,848 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,848 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,848 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,849 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:28,849 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,850 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:28,850 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,850 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,850 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,851 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,851 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,851 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,851 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,851 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,852 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,853 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,856 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata2ri' -== 2023-01-26 17:36:28,856 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:28,856 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:28,856 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:28,856 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:28,858 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:28,859 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:28,859 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:28,860 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:28,860 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:28,861 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:28,862 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:28,862 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:28,863 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:28,863 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:28,864 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:28,864 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:28,865 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:28,865 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:28,865 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:28,865 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:28,865 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:28,866 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:28,867 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:28,869 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:28,869 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:28,869 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:28,871 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:28,871 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,871 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:28,871 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:28,871 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,872 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:28,872 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,872 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,872 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,873 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,873 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,873 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,874 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,874 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,874 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,874 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,875 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:28,875 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,876 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:28,876 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,876 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,876 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,877 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,877 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,877 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,877 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,877 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,878 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,878 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,879 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:28,879 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,880 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:28,880 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:28,880 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,880 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:28,880 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,881 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,881 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,881 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,881 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,882 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,882 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,883 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,883 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,883 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,884 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:28,884 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,884 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:28,884 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,884 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,885 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,885 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:28,885 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,885 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:28,886 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,887 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:28,887 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,887 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:28,887 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,888 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,888 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,888 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,888 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,889 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,889 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,889 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,889 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,889 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,891 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:28,891 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,891 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:28,891 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,891 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,892 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,892 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,892 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,892 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,893 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,893 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,893 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,894 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,895 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:28,896 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,896 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:28,896 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,896 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,897 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,897 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,897 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,897 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,897 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,898 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,898 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,898 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,899 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:28,899 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,900 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:28,900 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,900 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,900 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,901 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,901 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,901 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,901 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,901 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,902 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,902 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,902 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,902 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,903 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,903 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,903 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,904 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:28,904 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,905 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:28,905 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,905 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,905 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,906 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,906 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,906 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,906 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,906 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,907 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,907 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,907 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,907 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,907 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,908 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,908 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,909 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:28,909 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,909 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:28,910 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,910 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,910 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,910 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,911 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,911 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,911 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,911 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,912 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,913 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,913 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,914 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:28,914 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,914 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:28,915 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,915 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,915 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,915 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,915 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,916 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,916 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,916 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,916 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,917 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,918 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:28,918 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,918 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:28,918 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:28,918 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,919 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:28,919 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,919 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,919 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,920 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,920 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,920 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,920 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,921 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,922 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:28,922 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,923 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:28,923 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:28,923 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,923 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:28,924 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,924 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,924 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,924 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,925 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,925 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,925 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,925 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,925 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,926 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,926 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,927 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:28,927 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,927 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:28,928 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:28,928 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,928 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:28,928 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:28,929 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,929 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:28,929 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,929 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,930 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,930 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:28,931 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:28,932 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,932 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:28,932 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,932 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,933 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,933 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,933 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,933 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,934 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,934 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,934 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,934 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,935 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:28,935 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,936 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:28,936 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:28,936 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,936 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:28,937 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,937 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,937 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,937 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,938 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,938 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,938 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,939 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,939 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,940 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,940 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,940 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,940 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,941 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,941 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,941 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,941 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,941 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,942 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,943 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,944 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:28,944 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,945 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:28,945 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,945 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,945 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,946 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,946 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,946 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,946 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,946 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,947 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,947 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,948 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:28,948 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,949 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:28,949 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,949 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,949 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,950 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,950 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,950 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,950 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,950 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,951 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,951 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,952 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:28,952 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,953 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:28,953 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,953 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,953 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,953 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,954 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,954 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,954 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,954 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,955 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,955 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,956 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:28,956 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,956 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:28,956 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:28,957 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,957 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:28,957 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:28,957 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,958 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:28,958 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,958 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,958 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,960 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:28,961 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,961 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,961 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,961 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,962 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,962 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,962 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,962 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,962 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,963 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,963 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,963 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,963 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,964 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:28,964 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,965 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:28,965 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:28,965 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,965 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:28,966 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,966 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,966 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,966 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,966 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,967 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,967 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,968 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:28,968 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,968 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:28,968 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:28,968 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,969 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:28,969 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,969 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,969 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,970 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,970 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,970 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,970 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,970 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,970 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,971 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,972 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:28,972 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,972 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:28,973 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:28,973 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,973 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:28,973 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,973 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,974 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,974 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,974 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,974 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,974 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,975 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:28,976 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,976 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:28,976 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,976 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,976 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,977 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,977 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,977 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,977 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,977 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,978 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,978 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,978 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,978 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,978 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,979 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,979 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,980 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:28,980 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,980 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:28,980 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:28,981 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,981 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:28,981 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:28,981 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,981 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:28,982 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:28,982 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,982 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:28,982 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,982 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,982 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,983 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,983 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:28,983 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:28,985 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'get_version' -== 2023-01-26 17:36:28,986 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:28,986 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:28,986 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:28,986 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:28,988 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:28,989 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:28,989 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:28,989 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:28,989 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:28,990 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:28,991 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:28,991 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:28,992 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:28,992 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:28,993 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:28,993 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:28,994 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:28,995 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:28,996 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:28,997 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:28,997 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:28,997 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:28,999 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:28,999 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:28,999 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:28,999 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,000 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,000 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,000 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,000 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,000 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,001 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,001 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,001 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,001 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,001 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,002 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,002 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,002 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,003 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,003 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,003 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,004 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,004 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,004 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,004 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,004 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,005 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,005 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,005 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,005 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,005 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,006 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,007 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,007 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,007 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,007 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,007 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,008 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,008 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,008 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,008 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,008 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,009 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,009 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,010 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,010 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,010 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,010 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,010 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,011 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,011 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,011 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,011 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,011 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,012 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,012 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,012 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,013 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,013 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,013 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,014 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,014 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,014 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,014 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,014 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,015 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,015 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,015 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,015 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,015 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,016 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,016 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,017 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,017 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,017 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,017 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,017 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,018 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,018 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,018 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,018 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,018 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,019 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,019 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,019 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,019 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,019 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,019 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,020 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,021 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,021 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,021 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,021 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,021 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,022 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,022 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,022 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,022 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,022 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,023 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,023 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,024 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,024 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,024 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,024 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,025 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,025 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,025 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,025 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,025 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,026 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,026 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,026 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,027 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,027 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,027 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,028 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,028 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,028 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,029 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,029 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,029 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,029 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,029 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,030 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,030 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,030 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,030 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,030 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,030 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,031 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,031 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,031 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,031 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,032 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,032 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,033 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,033 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,033 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,033 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,033 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,033 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,034 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,034 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,034 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,034 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,034 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,035 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,035 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,035 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,035 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,035 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,036 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,036 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,037 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,037 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,037 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,044 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,044 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,045 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,045 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,045 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,045 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,045 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,046 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,046 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,047 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,047 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,047 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,047 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,047 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,048 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,048 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,048 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,048 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,048 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,049 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,050 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,051 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,051 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,051 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,051 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,051 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,052 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,052 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,052 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,052 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,052 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,052 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,053 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,054 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,055 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,055 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,055 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,055 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,055 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,055 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,056 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,056 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,056 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,056 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,056 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,057 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,057 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,058 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,058 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,059 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,059 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,059 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,059 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,060 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,060 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,060 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,060 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,060 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,061 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,061 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,062 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,062 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,062 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,062 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,062 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,063 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,063 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,063 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,063 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,063 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,063 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,064 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,064 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,065 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,065 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,065 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,065 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,066 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,066 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,066 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,066 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,066 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,067 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,067 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,067 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,067 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,067 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,067 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,068 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,069 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,069 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,069 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,070 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,070 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,070 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,070 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,070 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,071 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,071 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,071 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,071 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,071 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,072 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,072 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,073 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,073 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,073 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,073 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,073 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,074 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,074 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,074 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,074 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,074 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,074 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,075 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,076 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,076 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,076 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,076 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,076 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,077 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,077 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,077 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,077 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,077 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,078 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,078 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,079 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,079 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,079 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,079 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,079 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,080 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,080 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,080 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,080 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,080 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,080 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,081 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,082 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,082 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,083 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,083 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,083 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,084 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,084 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,084 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,084 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,084 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,085 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,085 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,085 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,085 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,085 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,086 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,087 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,087 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,087 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,087 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,087 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,088 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,088 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,088 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,088 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,088 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,089 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,089 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,090 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,090 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,090 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,090 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,091 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,091 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,091 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,091 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,091 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,092 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,092 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,092 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,092 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,092 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,092 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,093 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,093 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,093 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,094 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,094 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,094 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,095 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,095 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,095 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,095 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,095 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,096 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,096 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,096 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,096 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,096 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,097 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,098 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,098 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,098 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,098 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,098 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,099 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,099 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,099 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,099 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,099 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,100 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,101 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,102 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,102 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,102 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,102 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,102 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,103 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,103 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,103 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,103 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,103 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,104 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,104 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,104 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,104 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,104 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,105 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,105 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,105 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,107 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-26 17:36:29,108 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,108 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,108 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,108 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,110 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,111 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,111 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,111 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,111 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,113 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,113 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,113 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,114 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,114 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,115 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,115 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,116 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,116 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,116 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,116 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,116 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,117 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,118 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,119 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,119 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,120 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,121 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,121 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,121 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,122 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,122 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,122 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,122 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,122 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,123 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,123 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,123 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,123 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,123 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,124 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,124 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,124 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,124 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,125 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,125 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,126 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,126 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,126 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,126 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,127 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,127 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,127 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,127 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,127 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,128 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,128 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,129 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,129 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,129 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,129 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,129 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,130 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,130 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,130 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,130 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,130 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,131 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,131 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,131 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,132 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,132 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,132 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,133 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,133 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,133 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,133 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,133 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,134 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,134 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,134 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,134 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,134 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,135 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,136 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,136 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,136 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,136 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,136 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,137 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,137 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,137 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,137 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,137 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,138 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,138 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,139 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,139 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,139 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,139 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,140 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,140 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,140 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,140 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,141 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,141 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,141 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,141 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,141 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,141 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,142 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,142 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,142 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,142 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,143 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,143 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,144 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,144 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,144 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,144 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,144 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,145 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,145 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,145 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,145 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,145 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,146 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,147 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,147 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,147 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,147 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,147 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,148 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,148 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,148 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,148 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,148 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,149 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,149 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,149 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,149 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,149 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,150 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,151 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,151 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,151 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,152 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,152 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,152 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,152 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,152 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,153 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,153 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,153 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,153 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,153 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,154 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,154 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,154 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,154 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,154 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,155 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,155 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,156 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,156 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,156 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,156 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,157 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,157 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,157 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,157 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,157 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,158 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,158 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,158 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,158 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,158 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,159 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,159 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,160 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,160 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,160 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,160 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,161 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,161 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,161 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,161 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,161 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,162 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,162 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,162 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,162 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,163 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,163 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,164 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,164 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,164 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,164 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,164 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,164 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,165 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,165 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,165 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,165 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,166 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,166 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,166 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,166 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,166 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,167 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,167 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,168 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,168 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,168 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,168 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,169 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,169 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,169 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,169 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,169 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,170 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,170 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,170 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,170 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,170 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,171 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,172 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,172 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,172 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,172 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,172 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,173 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,173 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,173 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,173 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,173 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,174 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,174 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,174 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,174 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,174 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,175 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,176 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,176 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,176 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,176 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,176 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,177 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,177 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,177 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,177 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,178 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,178 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,178 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,178 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,179 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,179 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,180 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,180 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,180 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,180 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,180 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,180 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,181 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,181 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,181 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,181 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,182 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,183 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,183 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,183 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,183 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,183 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,184 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,184 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,184 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,184 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,185 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,185 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,185 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,185 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,185 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,185 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,186 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,186 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,186 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,187 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,187 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,188 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,188 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,188 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,188 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,188 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,188 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,189 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,189 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,189 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,189 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,189 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,191 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,191 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,191 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,191 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,191 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,192 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,192 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,192 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,192 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,192 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,193 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,193 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,193 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,194 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,194 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,194 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,195 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,195 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,195 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,195 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,195 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,196 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,196 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,196 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,196 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,196 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,197 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,198 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,198 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,198 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,198 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,199 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,199 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,199 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,199 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,199 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,199 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,200 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,200 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,200 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,200 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,201 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,201 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,201 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,202 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,202 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,202 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,203 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,203 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,203 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,203 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,203 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,204 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,204 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,204 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,204 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,204 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,205 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,206 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,206 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,206 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,206 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,207 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,207 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,207 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,207 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,207 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,207 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,208 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,208 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,209 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,209 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,210 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,210 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,210 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,210 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,210 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,211 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,211 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,211 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,211 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,211 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,212 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,212 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,212 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,212 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,212 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,213 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,214 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,214 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,214 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,214 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,214 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,215 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,215 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,215 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,215 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,215 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,216 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,216 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,216 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,217 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,217 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,217 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,218 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,218 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,218 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,218 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,218 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,219 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,219 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,219 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,219 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,220 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,221 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,221 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,222 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,222 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,222 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,222 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,223 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,223 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,223 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,223 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,223 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,223 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,225 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,227 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'annoy' -== 2023-01-26 17:36:29,227 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,227 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,227 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,228 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,229 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,230 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,230 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,230 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,231 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,232 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,232 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,233 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,234 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,234 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,234 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,235 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,235 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,235 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,235 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,236 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,237 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,238 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,239 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,239 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,240 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,240 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,241 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,241 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,241 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,241 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,241 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,241 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,242 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,242 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,242 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,242 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,243 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,243 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,244 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,244 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,245 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,245 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,245 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,245 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,245 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,246 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,246 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,246 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,246 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,246 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,247 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,248 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,248 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,248 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,248 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,248 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,249 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,249 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,249 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,249 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,249 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,249 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,250 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,250 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,251 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,251 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,251 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,251 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,252 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,252 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,252 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,252 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,252 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,253 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,253 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,253 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,253 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,254 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,254 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,254 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,255 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,255 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,255 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,255 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,255 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,256 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,256 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,256 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,256 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,256 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,257 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,257 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,258 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,258 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,258 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,258 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,258 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,259 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,259 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,259 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,259 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,259 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,260 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,261 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,262 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,262 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,262 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,262 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,262 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,263 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,263 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,263 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,263 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,263 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,264 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,264 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,265 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,265 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,265 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,265 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,265 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,266 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,266 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,266 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,266 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,266 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,267 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,267 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,267 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,267 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,267 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,268 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,268 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,269 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,269 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,269 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,269 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,270 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,270 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,270 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,270 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,270 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,271 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,271 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,271 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,272 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,272 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,272 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,273 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,273 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,273 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,274 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,274 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,274 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,274 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,274 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,275 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,275 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,275 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,275 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,275 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,276 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,276 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,276 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,276 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,277 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,277 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,278 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,278 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,278 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,278 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,278 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,278 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,279 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,279 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,279 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,279 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,279 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,280 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,280 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,281 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,281 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,281 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,281 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,281 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,282 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,282 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,282 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,282 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,282 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,283 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,283 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,283 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,283 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,283 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,284 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,284 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,285 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,285 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,285 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,285 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,285 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,286 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,286 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,286 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,286 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,286 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,287 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,287 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,288 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,288 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,289 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,289 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,289 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,289 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,289 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,289 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,290 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,290 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,290 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,290 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,290 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,291 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,291 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,291 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,292 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,292 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,292 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,293 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,293 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,293 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,293 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,293 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,294 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,294 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,294 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,294 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,294 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,302 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,302 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,303 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,303 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,303 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,303 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,303 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,303 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,304 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,304 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,304 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,304 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,304 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,305 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,306 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,306 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,306 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,306 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,306 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,307 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,307 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,307 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,307 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,307 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,308 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,308 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,308 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,308 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,308 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,308 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,309 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,310 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,310 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,310 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,310 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,310 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,311 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,311 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,311 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,311 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,311 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,311 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,312 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,312 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,313 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,313 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,313 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,313 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,314 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,314 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,314 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,314 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,314 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,315 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,315 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,315 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,315 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,316 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,316 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,317 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,317 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,317 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,317 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,317 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,317 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,318 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,318 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,318 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,318 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,318 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,319 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,319 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,320 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,320 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,320 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,320 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,320 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,321 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,321 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,321 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,321 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,321 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,322 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,323 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,324 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,324 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,324 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,324 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,324 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,324 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,325 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,325 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,325 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,325 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,325 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,326 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,326 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,327 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,327 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,327 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,327 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,327 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,328 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,328 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,328 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,328 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,328 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,329 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,329 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,329 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,330 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,330 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,330 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,331 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,331 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,331 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,331 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,331 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,331 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,332 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,332 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,332 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,332 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,332 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,332 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,333 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,333 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,333 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,334 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,335 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,335 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,335 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,335 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,335 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,336 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,336 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,336 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,336 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,336 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,337 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,337 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,338 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,338 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,338 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,338 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,338 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,339 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,339 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,339 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,339 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,340 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,340 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,340 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,340 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,340 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,340 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,341 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,341 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,341 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,342 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,342 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,342 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,343 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,343 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,343 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,343 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,343 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,344 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,344 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,344 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,344 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,344 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,344 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,345 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,348 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'geosketch' -== 2023-01-26 17:36:29,348 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,348 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,348 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,348 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,350 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,351 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,351 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,351 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,351 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,353 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,353 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,353 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,354 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,355 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,355 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,356 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,356 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,356 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,356 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,356 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,357 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,358 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,359 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,359 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,360 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,362 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,362 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,362 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,362 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,362 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,363 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,363 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,363 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,363 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,364 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,364 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,364 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,365 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,365 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,366 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,366 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,366 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,367 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,367 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,367 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,367 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,367 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,368 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,368 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,368 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,368 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,368 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,369 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,369 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,370 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,370 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,370 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,370 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,370 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,371 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,371 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,371 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,371 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,371 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,372 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,373 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,373 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,373 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,373 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,373 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,374 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,374 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,374 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,374 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,374 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,375 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,375 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,375 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,376 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,376 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,376 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,377 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,377 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,377 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,377 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,377 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,378 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,378 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,378 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,378 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,378 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,379 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,379 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,380 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,380 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,380 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,380 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,381 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,381 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,381 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,381 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,381 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,381 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,382 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,382 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,382 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,382 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,382 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,383 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,384 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,384 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,384 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,384 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,384 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,385 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,385 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,385 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,385 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,385 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,385 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,386 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,386 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,387 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,387 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,387 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,388 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,388 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,388 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,388 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,388 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,389 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,389 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,389 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,389 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,389 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,389 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,390 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,390 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,390 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,390 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,391 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,391 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,392 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,392 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,392 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,392 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,392 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,393 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,393 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,393 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,393 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,393 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,395 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,396 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,396 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,396 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,396 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,396 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,397 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,397 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,397 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,397 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,397 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,398 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,398 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,398 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,398 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,398 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,399 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,399 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,399 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,400 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,400 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,400 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,401 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,401 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,401 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,401 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,401 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,402 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,402 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,402 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,402 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,402 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,403 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,403 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,404 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,404 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,404 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,404 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,404 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,405 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,405 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,405 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,405 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,405 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,406 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,406 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,406 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,406 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,406 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,407 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,408 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,408 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,408 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,408 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,409 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,409 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,409 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,409 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,409 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,409 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,410 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,410 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,410 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,410 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,410 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,411 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,412 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,412 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,412 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,412 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,412 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,413 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,413 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,413 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,413 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,414 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,414 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,414 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,414 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,415 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,416 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,416 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,416 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,416 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,416 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,417 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,417 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,417 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,417 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,418 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,418 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,418 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,418 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,419 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,419 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,420 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,420 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,420 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,420 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,420 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,421 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,421 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,421 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,421 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,422 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,422 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,423 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,423 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,423 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,423 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,423 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,424 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,424 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,424 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,424 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,425 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,425 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,425 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,425 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,426 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,426 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,426 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,426 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,427 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,427 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,428 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,428 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,428 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,428 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,428 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,429 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,429 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,429 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,429 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,429 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,430 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,431 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,431 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,431 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,431 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,431 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,432 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,432 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,432 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,432 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,433 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,433 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,433 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,433 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,434 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,434 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,435 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,435 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,435 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,435 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,435 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,436 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,436 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,436 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,436 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,436 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,437 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,438 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,438 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,438 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,438 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,438 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,439 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,439 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,439 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,439 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,439 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,440 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,440 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,440 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,440 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,440 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,441 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,441 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,441 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,442 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,442 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,443 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,443 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,443 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,443 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,443 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,443 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,444 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,444 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,444 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,444 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,445 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,446 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,446 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,446 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,446 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,446 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,447 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,447 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,447 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,447 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,447 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,448 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,448 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,448 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,449 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,449 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,449 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,450 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,450 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,450 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,450 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,450 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,451 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,451 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,451 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,451 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,451 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,452 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,454 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,454 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,454 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,454 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,454 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,455 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,455 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,455 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,455 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,455 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,456 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,456 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,456 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,457 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,457 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,457 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,458 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,458 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,458 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,458 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,459 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,459 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,459 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,459 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,460 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,461 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,462 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,462 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,462 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,462 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,462 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,463 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,463 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,463 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,463 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,463 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,464 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,464 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,464 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,464 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,464 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,465 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,467 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'fbpca' -== 2023-01-26 17:36:29,468 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,468 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,468 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,468 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,469 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,471 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,471 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,471 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,471 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,472 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,473 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,473 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,474 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,474 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,474 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,475 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,476 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,477 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,477 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,477 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,477 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,479 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,479 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,479 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,481 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,481 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,481 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,481 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,481 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,482 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,482 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,482 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,482 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,482 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,482 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,483 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,484 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,484 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,485 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,485 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,485 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,485 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,485 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,486 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,486 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,486 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,486 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,486 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,487 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,487 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,487 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,488 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,488 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,488 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,489 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,489 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,489 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,489 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,489 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,490 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,490 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,490 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,490 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,490 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,491 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,491 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,492 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,492 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,492 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,492 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,492 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,493 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,493 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,493 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,493 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,493 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,494 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,495 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,495 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,495 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,495 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,495 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,496 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,496 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,496 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,496 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,496 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,496 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,497 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,497 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,498 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,498 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,498 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,498 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,498 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,499 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,499 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,499 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,499 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,500 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,500 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,500 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,500 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,500 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,500 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,501 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,502 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,502 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,502 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,503 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,503 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,503 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,503 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,503 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,503 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,504 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,504 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,504 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,504 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,505 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,505 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,506 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,506 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,506 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,506 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,506 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,506 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,507 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,507 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,507 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,507 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,507 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,508 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,508 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,508 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,508 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,508 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,509 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,509 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,510 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,510 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,510 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,510 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,510 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,511 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,511 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,511 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,511 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,511 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,512 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,513 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,514 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,514 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,514 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,514 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,514 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,515 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,515 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,515 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,515 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,515 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,516 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,516 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,517 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,518 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,518 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,518 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,518 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,518 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,519 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,519 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,519 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,519 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,519 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,519 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,520 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,520 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,521 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,521 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,521 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,521 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,521 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,522 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,522 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,522 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,522 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,523 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,523 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,523 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,524 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,524 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,525 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,525 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,525 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,525 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,525 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,526 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,526 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,526 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,526 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,526 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,527 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,527 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,527 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,527 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,527 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,528 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,529 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,529 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,529 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,529 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,529 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,530 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,530 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,530 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,530 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,530 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,531 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,531 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,531 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,532 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,533 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,533 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,533 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,533 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,533 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,534 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,534 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,534 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,534 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,534 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,535 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,535 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,536 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,536 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,536 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,536 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,536 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,537 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,537 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,537 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,537 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,537 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,537 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,538 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,538 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,539 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,539 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,539 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,539 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,540 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,540 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,540 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,540 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,540 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,541 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,541 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,541 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,541 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,541 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,541 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,542 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,542 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,542 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,543 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,543 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,543 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,544 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,544 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,544 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,544 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,544 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,544 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,545 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,545 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,545 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,545 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,546 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,546 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,547 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,547 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,547 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,547 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,547 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,547 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,548 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,548 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,548 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,548 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,548 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,549 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,549 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,550 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,550 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,550 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,550 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,550 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,551 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,551 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,551 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,551 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,551 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,551 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,552 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,560 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,560 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,560 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,560 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,561 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,561 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,561 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,561 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,561 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,561 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,562 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,563 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,563 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,564 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,564 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,564 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,564 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,565 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,565 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,565 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,565 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,565 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,566 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,566 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,566 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,566 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,567 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,567 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,568 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,568 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,568 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,568 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,568 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,568 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,569 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,569 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,569 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,569 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,569 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,570 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,570 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,571 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,571 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,571 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,571 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,572 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,572 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,572 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,572 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,572 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,572 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,573 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,573 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,573 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,573 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,573 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,573 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,574 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,575 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,575 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,575 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,575 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,575 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,576 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,576 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,576 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,576 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,576 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,577 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,577 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,578 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,578 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,578 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,578 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,578 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,579 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,579 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,579 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,579 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,579 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,580 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,580 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,581 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,581 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,582 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,582 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,582 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,582 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,582 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,583 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,583 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,583 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,583 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,584 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,584 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,584 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,584 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,585 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,585 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,585 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,585 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,585 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,588 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scgen' -== 2023-01-26 17:36:29,588 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,588 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,588 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,588 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,590 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,591 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,591 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,591 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,591 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,593 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,593 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,594 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,594 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,595 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,595 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,596 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,596 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,596 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,596 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,596 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,597 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,598 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,599 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,599 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,600 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,601 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,601 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,602 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,602 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,602 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,602 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,602 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,602 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,603 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,603 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,603 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,603 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,604 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,605 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,605 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,606 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,606 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,606 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,606 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,607 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,607 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,607 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,607 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,607 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,608 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,608 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,609 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,609 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,609 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,609 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,609 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,610 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,610 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,610 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,610 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,610 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,611 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,611 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,611 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,612 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,612 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,612 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,613 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,613 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,613 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,613 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,613 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,614 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,614 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,614 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,614 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,614 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,615 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,615 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,616 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,616 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,616 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,616 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,617 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,617 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,617 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,617 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,617 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,618 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,618 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,619 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,619 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,619 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,619 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,619 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,620 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,620 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,620 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,620 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,621 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,621 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,621 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,621 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,621 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,621 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,622 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,622 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,622 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,623 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,623 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,623 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,624 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,624 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,624 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,624 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,624 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,625 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,625 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,625 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,625 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,625 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,626 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,627 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,627 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,627 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,627 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,627 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,628 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,628 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,628 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,628 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,628 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,629 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,630 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,630 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,631 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,631 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,631 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,631 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,631 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,632 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,632 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,632 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,632 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,633 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,633 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,633 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,633 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,633 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,633 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,634 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,635 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,635 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,635 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,636 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,636 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,636 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,636 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,636 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,637 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,637 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,637 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,637 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,637 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,638 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,638 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,639 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,639 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,640 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,640 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,640 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,640 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,641 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,641 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,641 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,641 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,641 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,642 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,642 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,643 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,643 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,643 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,643 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,643 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,644 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,644 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,644 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,644 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,644 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,645 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,645 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,645 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,645 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,645 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,646 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,646 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,647 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,647 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,647 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,647 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,648 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,648 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,648 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,648 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,648 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,649 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,649 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,649 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,650 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,651 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,651 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,651 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,652 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,652 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,652 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,652 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,652 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,653 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,653 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,653 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,653 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,653 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,654 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,655 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,655 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,655 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,656 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,656 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,656 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,656 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,656 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,657 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,657 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,657 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,657 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,657 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,658 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,659 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,659 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,659 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,659 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,659 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,660 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,660 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,660 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,660 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,660 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,661 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,661 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,662 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,662 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,662 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,662 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,663 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,663 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,663 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,663 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,663 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,664 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,664 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,664 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,664 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,664 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,665 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,665 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,665 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,665 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,666 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,666 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,667 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,667 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,667 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,667 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,667 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,668 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,668 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,668 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,668 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,669 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,669 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,670 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,670 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,670 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,670 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,670 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,671 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,671 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,671 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,671 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,672 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,672 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,672 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,672 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,673 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,673 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,674 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,674 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,674 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,674 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,674 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,675 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,675 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,675 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,675 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,675 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,676 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,677 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,677 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,677 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,677 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,677 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,678 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,678 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,678 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,678 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,679 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,679 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,679 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,679 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,679 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,680 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,680 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,681 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,681 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,682 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,682 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,682 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,682 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,682 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,683 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,683 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,683 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,683 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,683 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,684 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,685 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,685 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,685 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,685 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,685 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,686 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,686 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,686 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,686 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,687 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,687 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,687 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,687 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,688 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,688 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,689 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,689 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,689 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,689 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,689 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,689 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,690 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,690 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,690 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,690 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,691 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,691 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,693 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,693 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,693 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,693 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,693 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,694 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,694 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,694 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,694 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,694 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,695 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,695 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,695 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,696 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,696 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,696 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,697 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,697 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,697 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,697 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,697 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,698 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,698 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,698 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,698 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,698 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,699 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,699 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,699 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,699 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,699 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,700 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,701 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,701 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,701 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,701 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,702 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,702 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,702 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,702 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,702 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,702 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,703 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,704 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,704 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,706 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'bbknn' -== 2023-01-26 17:36:29,707 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,707 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,707 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,707 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,709 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,710 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,710 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,710 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,710 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,712 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,712 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,712 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,713 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,713 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,714 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,715 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,715 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,715 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,715 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,715 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,716 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,717 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,718 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,718 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,719 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,720 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,720 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,721 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,721 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,721 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,721 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,721 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,721 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,722 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,722 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,722 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,722 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,723 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,724 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,724 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,725 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,725 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,725 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,725 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,726 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,726 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,726 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,726 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,726 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,727 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,727 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,728 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,728 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,728 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,728 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,728 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,729 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,729 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,729 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,729 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,730 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,730 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,730 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,730 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,731 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,731 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,732 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,732 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,732 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,732 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,732 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,732 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,733 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,733 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,733 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,733 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,733 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,734 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,735 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,735 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,735 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,735 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,735 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,736 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,736 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,736 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,736 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,736 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,737 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,737 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,738 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,738 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,738 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,738 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,738 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,739 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,739 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,739 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,739 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,740 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,740 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,740 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,740 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,740 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,740 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,741 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,741 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,741 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,742 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,742 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,742 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,743 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,743 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,743 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,743 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,743 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,744 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,744 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,744 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,744 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,744 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,745 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,745 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,746 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,746 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,746 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,746 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,746 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,747 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,747 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,747 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,747 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,747 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,748 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,748 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,748 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,748 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,748 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,748 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,750 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,750 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,750 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,750 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,750 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,751 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,751 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,751 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,751 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,751 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,751 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,752 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,752 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,752 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,752 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,752 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,753 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,753 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,754 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,754 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,754 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,754 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,754 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,755 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,755 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,755 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,755 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,755 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,756 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,756 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,756 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,757 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,757 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,757 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,758 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,758 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,758 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,759 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,759 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,759 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,759 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,759 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,759 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,760 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,760 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,760 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,760 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,761 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,761 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,762 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,762 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,762 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,762 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,762 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,762 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,763 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,763 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,763 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,763 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,763 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,764 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,764 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,765 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,765 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,766 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,766 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,766 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,766 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,766 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,766 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,767 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,767 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,767 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,767 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,767 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,768 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,768 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,768 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,768 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,769 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,769 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,770 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,770 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,770 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,770 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,770 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,770 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,771 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,771 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,771 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,771 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,772 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,773 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,773 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,773 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,774 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,774 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,774 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,774 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,774 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,775 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,775 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,775 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,775 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,775 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,776 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,776 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,777 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,777 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,777 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,777 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,777 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,778 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,778 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,778 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,778 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,778 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,779 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,780 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,780 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,780 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,780 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,780 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,781 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,781 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,781 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,781 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,781 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,781 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,782 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,783 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,783 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,784 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,784 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,784 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,784 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,784 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,785 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,785 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,785 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,785 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,785 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,785 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,786 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,786 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,787 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,787 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,787 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,787 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,788 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,788 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,788 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,788 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,788 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,789 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,789 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,789 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,789 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,790 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,790 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,790 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,791 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,791 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,791 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,791 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,791 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,792 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,792 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,792 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,792 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,792 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,793 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,793 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,794 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,794 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,794 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,794 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,794 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,794 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,795 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,795 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,795 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,795 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,796 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,797 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,798 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,798 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,798 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,798 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,798 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,799 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,799 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,799 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,799 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,799 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,799 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,800 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,801 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,801 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,801 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,801 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,801 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,802 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,802 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,802 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,802 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,802 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,802 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,803 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,803 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,804 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,804 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,804 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,804 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,804 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,805 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,805 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,805 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,805 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,805 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,806 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,806 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,806 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,807 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,807 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,808 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,808 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,808 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,808 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,809 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,809 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,809 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,809 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,809 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,810 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,810 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,817 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,817 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,818 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,818 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,818 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,819 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,819 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,819 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,819 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,819 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,820 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,820 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,820 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,820 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,820 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,820 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,821 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,822 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,822 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,822 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,823 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,823 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,823 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,823 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,823 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,824 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,824 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,824 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,824 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,824 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,825 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,828 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scanorama' -== 2023-01-26 17:36:29,828 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,828 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,828 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,828 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,830 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,831 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,831 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,831 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,831 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,833 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,833 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,833 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,834 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,835 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,835 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,836 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,836 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,836 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,836 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,836 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,837 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,838 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,839 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,840 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,840 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,841 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,841 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,842 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,842 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,842 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,842 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,842 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,843 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,843 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,843 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,843 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,843 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,844 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,845 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,845 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,846 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,846 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,846 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,846 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,847 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,847 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,847 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,847 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,847 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,848 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,848 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,849 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,849 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,849 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,849 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,849 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,850 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,850 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,850 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,850 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,850 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,851 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,851 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,851 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,852 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,852 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,852 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,853 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,853 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,853 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,853 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,853 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,854 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,854 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,854 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,854 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,854 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,855 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,855 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,856 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,856 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,856 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,856 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,857 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,857 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,857 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,857 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,857 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,858 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,858 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,859 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,859 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,859 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,859 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,859 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,860 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,860 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,860 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,860 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,860 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,861 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,861 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,862 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,862 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,862 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,863 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,863 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,863 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,864 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,864 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,864 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,864 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,864 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,865 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,865 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,865 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,865 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,865 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,866 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,866 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,867 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,867 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,867 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,867 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,868 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,868 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,868 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,868 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,868 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,868 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,870 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,871 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,871 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,871 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,871 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,871 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,872 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,872 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,872 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,872 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,872 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,872 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,873 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,874 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,874 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,875 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,875 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,875 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,875 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,876 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,876 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,876 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,876 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,876 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,877 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,877 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,877 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,877 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,877 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,878 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,878 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,878 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,878 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,879 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,879 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,880 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,880 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,880 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,880 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,880 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,881 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,881 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,881 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,881 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,881 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,882 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,883 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:29,883 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,883 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:29,883 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:29,883 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,884 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:29,884 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,884 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,884 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,884 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,884 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,885 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,886 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,887 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:29,887 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,887 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:29,887 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:29,887 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,888 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:29,888 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,888 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,888 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,889 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,889 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,889 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,889 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,889 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,889 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,890 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,890 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,891 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:29,891 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,891 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:29,891 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:29,892 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,892 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:29,892 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,892 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,892 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,893 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,893 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,893 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,894 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:29,895 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:29,895 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,895 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:29,895 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,896 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,896 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,896 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,896 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,896 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,897 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,897 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,897 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,897 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,898 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:29,898 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,899 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:29,899 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,899 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,899 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,899 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,900 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,900 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,900 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,900 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,900 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,901 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,902 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,902 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,902 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,902 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,902 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,903 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,903 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,903 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,903 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,903 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,904 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,904 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,904 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,904 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,904 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,905 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,905 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,905 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,906 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:29,906 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,906 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:29,907 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,907 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,907 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,907 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,907 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,908 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,908 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,908 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,908 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,908 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,909 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:29,910 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,910 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:29,910 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,910 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,910 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,911 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,911 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,911 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,911 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,911 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,912 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,912 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,913 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:29,913 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,913 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:29,913 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,914 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,914 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,914 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,914 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,914 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,915 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,915 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,915 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,915 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,916 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:29,916 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,917 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:29,917 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:29,917 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,917 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:29,917 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,918 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,918 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,918 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,918 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,918 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,919 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,919 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,919 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,919 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,919 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,920 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,921 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,921 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,921 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,921 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,921 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,922 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,922 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,922 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,922 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,923 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,923 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,923 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,923 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,924 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:29,924 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,925 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:29,925 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:29,925 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,925 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:29,925 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,925 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,926 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,926 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,926 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,926 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,926 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,928 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:29,928 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,928 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:29,928 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:29,928 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,929 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:29,929 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,929 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,929 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,929 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,930 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,930 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,931 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,931 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,931 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,932 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:29,932 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,932 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:29,933 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,933 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,933 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,933 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,933 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,934 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,934 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,934 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,934 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,934 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,936 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:29,936 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,936 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:29,936 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,936 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,937 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,937 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,937 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,937 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,937 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,938 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,938 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,938 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,938 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,938 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,939 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,939 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,939 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,940 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:29,940 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,940 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:29,941 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,941 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,941 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,941 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,941 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,942 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,942 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,942 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,942 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,943 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,946 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'memory_profiler' -== 2023-01-26 17:36:29,946 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:29,946 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:29,946 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:29,947 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:29,948 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-26 17:36:29,949 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-26 17:36:29,950 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-26 17:36:29,950 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-26 17:36:29,950 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-26 17:36:29,951 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-26 17:36:29,952 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-26 17:36:29,952 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-26 17:36:29,953 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-26 17:36:29,953 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-26 17:36:29,953 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \["version"\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-26 17:36:29,954 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\["version"\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-26 17:36:29,955 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-26 17:36:29,956 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-26 17:36:29,957 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:36:29,958 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:36:29,958 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:36:29,959 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:36:29,960 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-26 17:36:29,960 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,961 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-26 17:36:29,961 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-26 17:36:29,961 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,961 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-26 17:36:29,961 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,962 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,962 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,962 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,962 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,962 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,963 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,963 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,963 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,963 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,963 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:29,964 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-26 17:36:29,965 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,965 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-26 17:36:29,965 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,965 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,965 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,966 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,966 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,966 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,966 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,966 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,967 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,967 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,968 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-26 17:36:29,968 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,968 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-26 17:36:29,968 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-26 17:36:29,969 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,969 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-26 17:36:29,969 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,969 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,969 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,970 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,970 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,970 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,970 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,971 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,971 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,972 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,972 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-26 17:36:29,972 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,972 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-26 17:36:29,972 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,972 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,973 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,973 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-26 17:36:29,973 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,973 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-26 17:36:29,973 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,974 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-26 17:36:29,975 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,975 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-26 17:36:29,975 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,975 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,975 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,976 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,976 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,976 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,976 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,976 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,977 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,977 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,978 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-26 17:36:29,978 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,978 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-26 17:36:29,978 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-26 17:36:29,978 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,979 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-26 17:36:29,979 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,979 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,979 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,979 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,980 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,980 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,980 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,981 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,981 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,981 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,982 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-26 17:36:29,982 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,982 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-26 17:36:29,983 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-26 17:36:29,983 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,983 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-26 17:36:29,983 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,983 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,984 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,984 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,984 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,984 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,984 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,985 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-26 17:36:29,985 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,986 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-26 17:36:29,986 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,986 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,986 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,986 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,987 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,987 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,987 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,987 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,987 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,988 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,989 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-26 17:36:29,990 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,990 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-26 17:36:29,990 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-26 17:36:29,990 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,990 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-26 17:36:29,991 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,991 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,991 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,991 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,991 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,992 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,992 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,992 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,992 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,992 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,992 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,993 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,994 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-26 17:36:29,994 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,994 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-26 17:36:29,994 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-26 17:36:29,994 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,995 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-26 17:36:29,995 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,995 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,995 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:29,995 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:29,996 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,996 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:29,996 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,996 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,996 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,997 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,997 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:29,997 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:29,998 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-26 17:36:29,998 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,998 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-26 17:36:29,998 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-26 17:36:29,999 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,999 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-26 17:36:29,999 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:29,999 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:29,999 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,000 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,000 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,000 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,000 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,001 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-26 17:36:30,001 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,001 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-26 17:36:30,002 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-26 17:36:30,002 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,002 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-26 17:36:30,002 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-26 17:36:30,002 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,003 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-26 17:36:30,003 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,003 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,003 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,003 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,004 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,004 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,004 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,004 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:30,005 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-26 17:36:30,005 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,005 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-26 17:36:30,006 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-26 17:36:30,006 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,006 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-26 17:36:30,006 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-26 17:36:30,006 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,007 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-26 17:36:30,007 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,007 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,007 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,007 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,008 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,008 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,008 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,008 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:30,009 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-26 17:36:30,009 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,009 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-26 17:36:30,010 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-26 17:36:30,010 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,010 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-26 17:36:30,010 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-26 17:36:30,010 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,011 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-26 17:36:30,011 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,011 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,011 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,012 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,012 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,012 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-26 17:36:30,013 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-26 17:36:30,013 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,013 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-26 17:36:30,013 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-26 17:36:30,014 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,014 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-26 17:36:30,014 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,014 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,014 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,015 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,015 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,015 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,015 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,016 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-26 17:36:30,016 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,017 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-26 17:36:30,017 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-26 17:36:30,017 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,017 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-26 17:36:30,017 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,017 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,018 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,018 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,018 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,018 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,018 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,019 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-26 17:36:30,019 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,020 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-26 17:36:30,020 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:30,020 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,020 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:30,021 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,021 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,021 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,021 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,021 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,021 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,023 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,023 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-26 17:36:30,024 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,024 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-26 17:36:30,024 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-26 17:36:30,024 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,024 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-26 17:36:30,025 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,025 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,025 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,025 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,025 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,026 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,026 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,027 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-26 17:36:30,027 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,027 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-26 17:36:30,027 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-26 17:36:30,027 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,028 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-26 17:36:30,028 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,028 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,028 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,029 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,029 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,029 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,029 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,030 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-26 17:36:30,030 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,030 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-26 17:36:30,031 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-26 17:36:30,031 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,031 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-26 17:36:30,031 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,031 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,032 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,032 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,032 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,032 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,032 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,033 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-26 17:36:30,033 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,034 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-26 17:36:30,034 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-26 17:36:30,034 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,034 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-26 17:36:30,034 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-26 17:36:30,034 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,035 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-26 17:36:30,035 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,035 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,035 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,035 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,036 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,036 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,036 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,036 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,036 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-26 17:36:30,037 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:30,037 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,038 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:30,038 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:30,038 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,038 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:30,039 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,039 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,039 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,039 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,039 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,039 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,040 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,041 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-26 17:36:30,041 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,041 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-26 17:36:30,041 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-26 17:36:30,041 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,042 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-26 17:36:30,042 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,042 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,042 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,042 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,042 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,043 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,043 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,044 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-26 17:36:30,044 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,044 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-26 17:36:30,044 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-26 17:36:30,044 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,045 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-26 17:36:30,045 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,045 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,045 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,045 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,046 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,046 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,047 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,047 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,048 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-26 17:36:30,048 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,048 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-26 17:36:30,048 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-26 17:36:30,049 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,049 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-26 17:36:30,049 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,049 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,049 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,050 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,050 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,050 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,050 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,051 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-26 17:36:30,051 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,051 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-26 17:36:30,052 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-26 17:36:30,052 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,052 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-26 17:36:30,052 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,052 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,053 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,053 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,053 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,053 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,054 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,054 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,054 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,054 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,055 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-26 17:36:30,055 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,056 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-26 17:36:30,056 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-26 17:36:30,056 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,056 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-26 17:36:30,056 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-26 17:36:30,056 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,057 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-26 17:36:30,057 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-26 17:36:30,057 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-26 17:36:30,057 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-26 17:36:30,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,058 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,058 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,058 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,058 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-26 17:36:30,058 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-26 17:36:30,061 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scib_pipeline' -== 2023-01-26 17:36:30,061 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-26 17:36:30,061 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-a0cn2933 (previous value: '/tmp/vsc43810/eb-a0cn2933') -== 2023-01-26 17:36:30,061 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-a0cn2933 as pip cache directory -== 2023-01-26 17:36:30,061 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-26 17:36:31,753 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-26 17:36:31,754 easyblock.py:1852 INFO Starting extension anndata -== 2023-01-26 17:36:31,754 build_log.py:267 INFO installing extension anndata 0.8.0 (1/12)... -== 2023-01-26 17:36:33,152 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:36:33,153 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:36:37,908 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:36:37,910 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:36:37,915 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:36:37,948 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:36:37,963 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,963 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,963 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,963 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,964 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,964 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,964 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,964 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,965 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,965 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,965 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,965 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,966 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,966 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,966 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,966 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,966 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,967 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,967 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,967 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,967 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,968 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,968 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,968 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,968 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-26 17:36:37,968 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-26 17:36:37,969 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,969 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,969 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,969 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,970 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-26 17:36:37,970 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-26 17:36:37,970 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,970 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,971 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,971 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,971 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,971 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,971 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,972 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,972 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-26 17:36:37,972 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-26 17:36:37,972 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,973 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,973 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,973 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,973 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,973 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,974 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,974 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,974 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:36:37,974 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:36:37,975 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,975 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,975 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:36:37,975 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:36:37,976 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,976 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,976 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,976 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,976 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,977 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,977 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:36:37,977 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-26 17:36:37,977 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,978 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,978 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:36:37,978 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-26 17:36:37,978 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,978 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,979 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-26 17:36:37,979 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-26 17:36:37,979 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,979 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-26 17:36:37,980 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,980 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,980 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,980 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,980 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,981 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,981 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,981 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,981 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,982 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,982 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,982 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-26 17:36:37,982 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,983 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,983 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,983 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,983 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-26 17:36:37,984 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-26 17:36:37,984 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-26 17:36:37,984 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-26 17:36:37,984 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,984 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,985 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,985 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,985 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,985 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,986 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,986 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,986 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-26 17:36:37,986 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-26 17:36:37,986 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,987 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-26 17:36:37,987 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-26 17:36:37,987 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-26 17:36:37,987 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:36:37,988 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:36:37,988 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:36:37,988 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-26 17:36:37,988 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-26 17:36:37,988 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-26 17:36:37,989 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-26 17:36:37,989 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-26 17:36:37,989 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-26 17:36:37,989 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-26 17:36:37,990 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-26 17:36:37,990 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-26 17:36:37,990 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-26 17:36:37,990 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-26 17:36:37,991 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,991 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-26 17:36:37,991 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-26 17:36:37,991 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-26 17:36:37,991 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-26 17:36:37,992 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-26 17:36:37,992 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-26 17:36:37,992 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-26 17:36:37,992 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-26 17:36:37,993 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-26 17:36:37,993 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-26 17:36:37,993 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-26 17:36:37,993 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,993 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,994 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,994 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-26 17:36:37,994 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-26 17:36:37,994 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-26 17:36:37,995 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-26 17:36:37,995 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-26 17:36:37,995 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,995 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-26 17:36:37,996 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-26 17:36:37,996 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-26 17:36:37,996 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-26 17:36:37,996 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-26 17:36:37,996 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,997 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-26 17:36:37,997 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,997 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-26 17:36:37,997 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,998 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-26 17:36:37,998 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:37,998 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-26 17:36:38,088 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:36:38,089 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:36:38,089 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:36:44,399 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:36:45,180 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:36:45,193 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-26 17:36:45,455 build_log.py:267 INFO configuring... -== 2023-01-26 17:36:45,464 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-26 17:36:45,464 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:36:45,698 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:36:45,699 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:36:45,699 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:36:45,979 build_log.py:267 INFO building... -== 2023-01-26 17:36:45,988 build_log.py:267 INFO testing... -== 2023-01-26 17:36:45,995 build_log.py:267 INFO installing... -== 2023-01-26 17:36:46,003 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:36:46,006 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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(previous value: 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s:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python') -== 2023-01-26 17:36:46,006 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:36:46,007 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:36:46,007 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:36:51,965 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:36:51,965 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:36:51,977 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:36:59,299 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata/anndata-0.8.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata - Building wheel for anndata (pyproject.toml): started - Building wheel for anndata (pyproject.toml): finished with status 'done' - Created wheel for anndata: filename=anndata-0.8.0-py3-none-any.whl size=96088 sha256=2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/94/11/1a/a47764057948cf4860f716a8020c41e1d6213fcb0c390ad796 -Successfully built anndata -Installing collected packages: anndata -Successfully installed anndata-0.8.0 - -== 2023-01-26 17:36:59,300 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:36:59,302 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:36:59,303 build_log.py:267 INFO ... (took 27 secs) -== 2023-01-26 17:36:59,311 easyblock.py:1852 INFO Starting extension anndata2ri -== 2023-01-26 17:36:59,312 build_log.py:267 INFO installing extension anndata2ri 1.1 (2/12)... -== 2023-01-26 17:37:01,036 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:37:01,037 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:37:01,037 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:37:01,041 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:37:01,044 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:37:01,071 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:37:01,082 environment.py:93 INFO Environment variable 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EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,086 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,087 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,087 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,087 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,087 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,087 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,088 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,088 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,088 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,088 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,089 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:01,089 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:01,089 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,089 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,090 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:01,090 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:01,090 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:01,090 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:01,091 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,091 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,091 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,091 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,091 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,092 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,092 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,092 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,092 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,093 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,093 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,093 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,093 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,093 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:01,094 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:01,094 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:01,094 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,094 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,095 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:01,095 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:01,095 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:01,095 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:01,096 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:01,096 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:01,096 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:01,096 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:01,096 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:01,097 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:01,097 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,097 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,097 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:01,098 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:01,098 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:01,098 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:01,098 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:01,099 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:01,099 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:01,099 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:01,099 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:01,099 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:01,100 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:01,100 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:01,100 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,100 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:01,101 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,101 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,101 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,101 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,101 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,102 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,102 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,102 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,102 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:01,103 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:01,103 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,103 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,103 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,104 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,104 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:01,104 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:01,104 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:01,105 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:01,105 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,105 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,105 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,105 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,106 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,106 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,106 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,106 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:01,107 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:01,107 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:01,107 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:01,107 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:01,107 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:01,108 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:01,108 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:01,108 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:01,108 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:01,109 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:01,109 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:01,109 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:01,109 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:01,110 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:01,110 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,110 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,110 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,110 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,111 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,111 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:01,111 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:01,111 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:01,112 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:01,112 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:01,112 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:01,112 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:01,113 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:01,113 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:01,113 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:01,113 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:01,113 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:01,114 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:01,114 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,114 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,114 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,115 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,115 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,115 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:01,115 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:01,115 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:01,116 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:01,116 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:01,116 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:01,116 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:01,117 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:01,117 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:01,117 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:01,117 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:01,118 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:01,118 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:01,118 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,118 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:01,119 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,119 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:01,123 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:01,123 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:01,124 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:37:02,063 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:37:02,778 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:37:02,789 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-26 17:37:02,912 build_log.py:267 INFO configuring... -== 2023-01-26 17:37:02,920 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:37:02,921 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:37:03,119 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:37:03,120 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:37:03,121 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:37:03,359 build_log.py:267 INFO building... -== 2023-01-26 17:37:03,367 build_log.py:267 INFO testing... -== 2023-01-26 17:37:03,375 build_log.py:267 INFO installing... -== 2023-01-26 17:37:03,383 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:37:03,384 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:37:03,384 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:37:04,562 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:37:04,562 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:37:04,574 run.py:236 INFO running cmd: sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' -e 's/^requires = .*/requires = ["setuptools"]/g' -e 's/dynamic = \["version"\]/version = "1.1"/g' pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:37:21,399 run.py:648 INFO cmd "sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' -e 's/^requires = .*/requires = ["setuptools"]/g' -e 's/dynamic = \["version"\]/version = "1.1"/g' pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri/anndata2ri-1.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata2ri - Building wheel for anndata2ri (pyproject.toml): started - Building wheel for anndata2ri (pyproject.toml): finished with status 'done' - Created wheel for anndata2ri: filename=anndata2ri-0.0.0-py3-none-any.whl size=25196 sha256=0c8854c683fe41fdb101a13d208aea05dc96a355ee26d6c4241230b151ef01d7 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/b4/73/9d/ae9b4a9918b0b78dff74f45e3a6b44f17c918aa56fb3eb9357 -Successfully built anndata2ri -Installing collected packages: anndata2ri -Successfully installed anndata2ri-0.0.0 - -== 2023-01-26 17:37:21,400 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:37:21,401 environment.py:93 INFO Environment variable PYTHONPATH set to 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:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python (previous value: 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-== 2023-01-26 17:37:21,401 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:37:21,402 build_log.py:267 INFO ... (took 22 secs) -== 2023-01-26 17:37:21,409 easyblock.py:1852 INFO Starting extension get_version -== 2023-01-26 17:37:21,411 build_log.py:267 INFO installing extension get_version 3.5.4 (3/12)... -== 2023-01-26 17:37:23,199 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:37:23,199 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:37:23,200 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:37:23,205 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:37:23,209 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:37:23,236 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:37:23,249 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,249 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,249 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,250 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,250 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,250 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,250 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,251 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,251 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,251 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,251 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,252 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,252 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,252 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,252 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,252 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,253 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,253 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,253 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,253 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,254 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,254 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,254 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,254 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,255 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:23,255 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:23,255 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,255 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,255 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,256 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,256 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:23,256 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:23,256 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,257 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,257 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,257 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,257 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,258 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,258 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,258 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,258 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,258 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,259 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,259 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,259 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,259 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:23,260 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:23,260 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:23,260 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,260 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,261 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:23,261 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:23,261 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:23,261 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:23,261 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:23,262 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:23,262 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:23,262 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:23,262 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:23,263 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:23,263 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,263 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,263 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:23,264 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:23,264 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:23,264 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:23,264 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:23,264 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:23,265 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:23,265 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:23,265 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:23,265 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:23,266 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,266 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:23,266 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,266 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:23,267 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,267 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,267 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,267 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,267 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,268 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,268 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,268 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,268 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:23,269 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:23,269 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,269 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,269 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,270 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,270 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:23,270 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:23,270 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:23,271 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:23,271 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,271 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,271 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,272 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,272 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,272 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,272 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:23,273 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:23,273 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:23,273 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:23,273 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:23,274 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:23,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:23,274 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:23,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:23,274 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:23,275 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:23,275 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:23,275 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:23,275 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:23,276 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:23,276 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,276 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,276 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,277 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,277 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,277 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:23,277 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:23,277 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:23,278 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:23,278 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:23,278 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:23,278 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:23,279 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:23,279 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:23,279 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:23,279 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:23,280 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:23,280 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:23,280 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,280 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,281 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,281 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,281 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,281 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:23,282 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:23,282 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:23,282 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:23,282 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:23,282 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:23,283 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:23,283 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:23,283 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:23,283 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:23,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:23,284 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:23,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:23,284 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:23,285 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:23,289 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:23,290 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:23,290 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:37:23,961 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:37:24,509 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:37:24,520 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-26 17:37:24,691 build_log.py:267 INFO configuring... -== 2023-01-26 17:37:24,698 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:37:24,699 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:37:24,880 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:37:24,881 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:37:24,882 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:37:25,150 build_log.py:267 INFO building... -== 2023-01-26 17:37:25,159 build_log.py:267 INFO testing... -== 2023-01-26 17:37:25,167 build_log.py:267 INFO installing... -== 2023-01-26 17:37:25,180 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-26 17:37:25,183 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:37:25,183 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:37:25,184 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:37:29,658 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:37:29,658 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:37:29,670 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:37:35,182 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version/get_version-3.5.4 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: get_version - Building wheel for get_version (pyproject.toml): started - Building wheel for get_version (pyproject.toml): finished with status 'done' - Created wheel for get_version: filename=get_version-3.5.4-py3-none-any.whl size=18331 sha256=b1d2797ea010ffb087315303edef89afb1a19d0e897a350d63db3b928742bb59 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/cf/80/18/e46eb57534df3a1ed6a8f0619f3da9ad4a9f76a90c82fe903d -Successfully built get_version -Installing collected packages: get_version -Successfully installed get_version-3.5.4 - -== 2023-01-26 17:37:35,183 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:37:35,184 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:37:35,185 build_log.py:267 INFO ... (took 13 secs) -== 2023-01-26 17:37:35,193 easyblock.py:1852 INFO Starting extension trvaep -== 2023-01-26 17:37:35,193 build_log.py:267 INFO installing extension trvaep 0.1.0 (4/12)... -== 2023-01-26 17:37:36,951 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:37:36,952 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:37:36,952 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:37:36,954 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:37:36,958 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:37:36,985 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:37:36,997 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:36,998 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:36,998 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:36,998 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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17:37:37,000 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,000 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,000 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,000 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,001 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,001 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,001 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,001 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,001 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,002 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,002 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,002 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,002 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,003 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,003 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,003 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,003 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:37,003 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:37,004 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,004 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,004 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:37,004 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:37,005 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:37,005 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:37,005 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,005 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,006 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,006 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,006 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,006 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,007 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,007 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,007 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,007 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,007 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,008 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,008 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,008 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:37:37,008 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:37,009 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:37,009 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,009 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,009 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:37,010 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:37,010 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:37,010 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:37,010 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:37,010 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:37,011 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:37,011 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:37,011 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:37,011 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:37:37,012 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,012 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,012 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:37,012 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:37:37,013 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:37,013 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:37:37,013 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:37,013 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:37:37,013 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:37,014 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:37:37,014 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:37,014 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:37:37,014 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:37,015 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:37:37,015 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,015 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:37:37,015 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,016 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,016 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,016 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,016 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,016 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,017 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,017 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,017 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:37,017 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:37:37,018 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,018 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,018 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,018 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,019 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:37,026 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:37:37,026 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:37,027 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:37:37,027 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,027 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,027 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,028 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,028 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,028 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,028 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,028 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:37:37,029 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:37,029 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:37:37,029 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:37,029 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:37:37,030 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:37,030 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:37:37,030 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:37,030 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:37,031 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:37,031 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:37:37,031 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:37,031 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:37:37,032 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:37,032 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:37:37,032 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,032 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,032 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,033 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,033 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,033 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:37:37,033 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:37,034 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:37:37,034 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:37,034 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:37:37,034 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:37,035 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:37:37,035 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:37,035 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:37:37,035 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:37,036 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:37:37,036 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:37,036 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:37:37,036 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,037 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,037 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,037 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,037 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,037 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:37:37,038 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:37,038 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:37:37,038 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:37,038 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:37:37,039 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:37,039 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:37:37,039 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:37,039 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:37:37,040 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:37,040 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:37:37,040 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:37,040 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:37:37,040 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,041 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:37:37,041 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,041 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:37:37,045 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:37,046 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:37:37,046 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:37:38,275 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:37:38,998 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:37:39,009 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-26 17:37:39,229 build_log.py:267 INFO configuring... -== 2023-01-26 17:37:39,237 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:37:39,238 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:37:39,467 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:37:39,468 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:37:39,469 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:37:39,726 build_log.py:267 INFO building... -== 2023-01-26 17:37:39,735 build_log.py:267 INFO testing... -== 2023-01-26 17:37:39,743 build_log.py:267 INFO installing... -== 2023-01-26 17:37:39,751 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:37:39,752 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:37:39,752 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:37:41,161 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:37:41,162 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:37:41,173 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:38:57,144 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: trvaep - Building wheel for trvaep (pyproject.toml): started - Building wheel for trvaep (pyproject.toml): finished with status 'done' - Created wheel for trvaep: filename=trvaep-0.1.0-py2.py3-none-any.whl size=16692 sha256=6f8b3ec8d5752a10c22dc8900f48aa03bc0f05a6209e21a3ecb38dfa2bfa7dc4 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/e6/45/0e/649225275b43c3c10635b7b5637466bc4b79c1673432fe2c17 -Successfully built trvaep -Installing collected packages: trvaep -Successfully installed trvaep-0.1.0 - -== 2023-01-26 17:38:57,146 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:38:57,146 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:38:57,147 build_log.py:267 INFO ... (took 1 min 21 secs) -== 2023-01-26 17:38:57,155 easyblock.py:1852 INFO Starting extension annoy -== 2023-01-26 17:38:57,168 build_log.py:267 INFO installing extension annoy 1.17.1 (5/12)... -== 2023-01-26 17:38:58,843 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:38:58,844 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:38:58,844 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:38:58,850 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:38:58,854 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:38:58,884 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:38:58,899 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,900 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,900 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,900 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,901 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,901 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,901 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,901 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,902 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,902 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,902 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,902 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,902 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,903 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,903 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,903 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,903 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,904 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,904 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,904 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,904 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,905 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,905 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,905 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,905 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:38:58,905 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:38:58,906 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,906 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,906 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,906 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,907 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:38:58,907 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:38:58,907 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,907 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,908 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,908 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,908 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,908 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,908 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,909 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,909 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,909 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,909 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,910 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,910 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,910 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:38:58,910 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:38:58,911 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:38:58,911 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,911 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,911 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:38:58,912 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:38:58,912 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:38:58,912 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:38:58,912 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:38:58,912 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:38:58,913 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:38:58,913 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:38:58,913 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:38:58,913 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:38:58,914 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,914 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,914 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:38:58,914 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:38:58,914 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:38:58,915 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:38:58,915 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:38:58,915 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:38:58,915 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:38:58,916 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:38:58,916 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:38:58,916 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:38:58,916 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,917 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:38:58,917 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,917 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:38:58,917 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,918 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,918 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,918 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,918 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,919 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,919 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,919 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,919 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:38:58,920 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:38:58,920 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,920 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,920 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,920 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,921 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:38:58,921 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:38:58,921 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:38:58,921 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:38:58,922 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,922 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,922 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,922 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,923 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,923 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,923 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,923 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:38:58,924 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:38:58,924 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:38:58,924 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:38:58,924 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:38:58,924 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:38:58,925 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:38:58,925 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:38:58,925 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:38:58,925 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:38:58,926 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:38:58,926 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:38:58,926 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:38:58,926 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:38:58,927 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:38:58,927 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,927 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,927 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,927 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,928 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,928 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:38:58,928 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:38:58,928 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:38:58,929 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:38:58,929 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:38:58,929 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:38:58,929 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:38:58,930 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:38:58,930 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:38:58,930 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:38:58,930 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:38:58,931 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:38:58,931 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:38:58,931 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,931 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,932 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,932 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,932 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,932 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:38:58,932 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:38:58,933 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:38:58,933 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:38:58,933 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:38:58,933 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:38:58,934 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:38:58,934 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:38:58,934 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:38:58,934 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:38:58,935 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:38:58,935 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:38:58,935 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:38:58,935 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,936 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:38:58,936 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,936 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:38:58,940 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:38:58,941 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:38:58,941 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:39:02,181 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:39:02,918 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:39:02,929 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-26 17:39:03,228 build_log.py:267 INFO configuring... -== 2023-01-26 17:39:03,236 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:39:03,237 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:39:03,466 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:39:03,467 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:39:03,477 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:39:03,727 build_log.py:267 INFO building... -== 2023-01-26 17:39:03,745 build_log.py:267 INFO testing... -== 2023-01-26 17:39:03,753 build_log.py:267 INFO installing... -== 2023-01-26 17:39:03,761 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-26 17:39:03,762 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:39:03,762 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:39:03,763 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:39:09,386 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:39:09,386 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:39:09,405 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:39:40,850 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy/annoy-1.17.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: annoy - Building wheel for annoy (setup.py): started - Building wheel for annoy (setup.py): finished with status 'done' - Created wheel for annoy: filename=annoy-1.17.1-cp310-cp310-linux_x86_64.whl size=541211 sha256=e659615fadfc6dc5db91f0a12fd2ec3f143574f675c21ff9fb89aa5a1d9fb0e9 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/34/d8/0d/f1b41ca54eef81939034f6d0bcb24de59097763a7273175652 -Successfully built annoy -Installing collected packages: annoy -Successfully installed annoy-1.17.1 - -== 2023-01-26 17:39:40,851 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:39:40,851 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:39:40,852 build_log.py:267 INFO ... (took 43 secs) -== 2023-01-26 17:39:40,861 easyblock.py:1852 INFO Starting extension geosketch -== 2023-01-26 17:39:40,863 build_log.py:267 INFO installing extension geosketch 1.2 (6/12)... -== 2023-01-26 17:39:42,615 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:39:42,616 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:39:42,616 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:39:42,621 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:39:42,624 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:39:42,649 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:39:42,662 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,662 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,662 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,662 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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17:39:42,664 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,664 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,664 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,664 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,665 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,665 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,665 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,665 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,665 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,666 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,666 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,666 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,666 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,667 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,667 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,667 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,667 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:42,667 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:42,668 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,668 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,668 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,668 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,669 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:42,669 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:42,669 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,669 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,670 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,670 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,670 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,670 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,670 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,671 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,671 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,671 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,671 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,672 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,672 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,672 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:42,672 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:42,673 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:42,673 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,673 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,673 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:42,673 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:42,674 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:42,674 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:42,674 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:42,674 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:42,675 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:42,675 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:42,675 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:42,675 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:42,676 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,676 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,676 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:42,676 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:42,676 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:42,677 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:42,677 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:42,677 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:42,677 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:42,678 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:42,678 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:39:42,678 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:39:42,678 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,678 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:42,679 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,679 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:42,679 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,679 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,680 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,680 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,680 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,680 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,681 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,681 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,681 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:39:42,681 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:39:42,681 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,682 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,682 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,682 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,682 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:39:42,683 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:39:42,683 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:39:42,683 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:39:42,683 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,684 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,684 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,684 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,684 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,684 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,685 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,685 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:42,685 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:39:42,685 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:39:42,686 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:39:42,686 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:39:42,686 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:39:42,686 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:39:42,687 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:42,687 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:42,687 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:42,687 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:42,687 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:39:42,688 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:39:42,688 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:39:42,688 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:39:42,688 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,689 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,689 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,689 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,689 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,689 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:42,690 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:39:42,690 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:39:42,690 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:39:42,690 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:39:42,691 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:39:42,691 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:39:42,691 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:39:42,691 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:39:42,692 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:42,692 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:42,692 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:42,692 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:42,692 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,693 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,693 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,693 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,693 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,694 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:42,694 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:39:42,694 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:39:42,694 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:39:42,695 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:39:42,695 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:39:42,695 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:39:42,695 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:39:42,695 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:39:42,696 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:39:42,696 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:39:42,696 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:39:42,696 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:39:42,697 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,697 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:42,697 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,697 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:42,701 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:39:42,702 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:39:42,702 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:39:43,910 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:39:44,649 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:39:44,667 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-26 17:39:44,898 build_log.py:267 INFO configuring... -== 2023-01-26 17:39:44,906 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:39:44,907 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:39:45,116 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:39:45,116 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:39:45,117 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:39:45,409 build_log.py:267 INFO building... -== 2023-01-26 17:39:45,417 build_log.py:267 INFO testing... -== 2023-01-26 17:39:45,425 build_log.py:267 INFO installing... -== 2023-01-26 17:39:45,439 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:39:45,442 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:39:45,442 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:39:47,306 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:39:47,307 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:39:47,318 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:39:56,205 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch/geosketch-1.2 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: geosketch - Building wheel for geosketch (setup.py): started - Building wheel for geosketch (setup.py): finished with status 'done' - Created wheel for geosketch: filename=geosketch-1.2-py3-none-any.whl size=8171 sha256=dab820ed9866b0a9a46b85434bd776fc1e0146d343d988382f4001f338188161 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/96/19/50/8ce27075d8f5e8556d06fab21bc1d6b261b472b9a63a7a6da8 -Successfully built geosketch -Installing collected packages: geosketch -Successfully installed geosketch-1.2 - -== 2023-01-26 17:39:56,206 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:39:56,207 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:39:56,208 build_log.py:267 INFO ... (took 15 secs) -== 2023-01-26 17:39:56,217 easyblock.py:1852 INFO Starting extension fbpca -== 2023-01-26 17:39:56,217 build_log.py:267 INFO installing extension fbpca 1.0 (7/12)... -== 2023-01-26 17:39:58,025 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:39:58,026 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:39:58,026 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:39:58,028 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:39:58,031 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:39:58,062 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:39:58,074 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,075 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,075 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,075 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,075 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,076 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,076 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,076 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,076 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,077 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,077 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,077 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,077 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,078 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,078 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,078 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,078 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,078 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,079 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,079 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,079 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,079 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,080 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,080 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,080 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:58,080 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:58,081 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,081 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,081 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,081 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,081 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:58,082 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:58,082 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,082 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,082 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,083 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,083 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,083 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,083 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,084 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,084 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,084 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,084 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,085 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,085 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,085 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:39:58,085 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:58,086 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:58,086 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,086 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,086 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:58,086 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:58,087 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:58,087 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:58,087 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:58,087 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:58,088 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:58,088 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:58,088 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:58,088 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:39:58,088 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,089 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,089 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:58,089 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:39:58,089 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:58,090 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:39:58,090 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:58,090 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:39:58,091 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:58,091 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:39:58,091 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:39:58,091 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:39:58,092 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,092 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:39:58,092 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,092 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:39:58,092 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,093 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,093 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,093 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,093 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,094 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,094 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,094 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,094 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:39:58,095 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:39:58,095 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,095 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,095 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,095 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,096 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:39:58,096 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:39:58,096 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:39:58,096 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:39:58,097 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,097 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,097 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,097 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,098 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,098 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,098 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,098 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:39:58,098 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:39:58,099 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:39:58,099 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:39:58,099 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:39:58,099 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:39:58,100 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:39:58,100 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:58,100 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:58,100 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:58,100 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:39:58,101 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:39:58,101 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:39:58,101 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:39:58,101 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:39:58,102 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,102 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,102 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,102 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,103 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,103 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:39:58,103 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:39:58,103 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:39:58,103 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:39:58,104 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:39:58,104 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:39:58,104 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:39:58,104 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:39:58,105 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:39:58,105 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:58,105 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:39:58,105 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:58,106 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:39:58,106 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,106 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,106 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,106 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,107 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,107 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:39:58,107 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:39:58,107 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:39:58,108 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:39:58,108 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:39:58,108 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:39:58,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:39:58,108 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:39:58,109 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:39:58,109 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:39:58,109 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:39:58,109 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:39:58,110 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:39:58,110 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,110 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:39:58,110 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,111 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:39:58,113 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:39:58,113 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:39:58,114 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:39:58,879 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:39:59,452 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:39:59,463 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-26 17:39:59,668 build_log.py:267 INFO configuring... -== 2023-01-26 17:39:59,676 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:39:59,676 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:39:59,873 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:39:59,873 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:39:59,874 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:00,164 build_log.py:267 INFO building... -== 2023-01-26 17:40:00,172 build_log.py:267 INFO testing... -== 2023-01-26 17:40:00,180 build_log.py:267 INFO installing... -== 2023-01-26 17:40:00,188 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-26 17:40:00,189 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:40:00,190 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:00,190 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:40:00,980 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:40:00,981 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:40:00,992 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:40:07,525 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca/fbpca-1.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: fbpca - Building wheel for fbpca (setup.py): started - Building wheel for fbpca (setup.py): finished with status 'done' - Created wheel for fbpca: filename=fbpca-1.0-py3-none-any.whl size=11375 sha256=255272a17c78f999355355f7ed27247abc59330710c9e5f7966b96c20c1e1a62 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/b0/18/24/41fc8c8485cd4ac05bba528fe1e48cff72ac980077e200ef5c -Successfully built fbpca -Installing collected packages: fbpca -Successfully installed fbpca-1.0 - -== 2023-01-26 17:40:07,526 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:40:07,527 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:40:07,528 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-26 17:40:07,536 easyblock.py:1852 INFO Starting extension scgen -== 2023-01-26 17:40:07,536 build_log.py:267 INFO installing extension scgen 2.1.0 (8/12)... -== 2023-01-26 17:40:09,222 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:40:09,223 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:40:09,223 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:40:09,225 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:40:09,228 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:40:09,252 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:40:09,264 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,264 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,264 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,264 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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17:40:09,266 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,266 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,266 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,267 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,267 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,267 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,267 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,267 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,268 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,268 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,268 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,268 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,269 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,269 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,269 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,269 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:09,270 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:09,270 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,270 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,270 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,271 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,271 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:09,271 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:09,271 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,271 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,272 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,272 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,272 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,272 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,273 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,273 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,273 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,273 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,274 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,274 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,274 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,274 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:09,274 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:09,275 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:09,275 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,275 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,275 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:09,276 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:09,276 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:09,276 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:09,276 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:09,277 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:09,277 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:09,277 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:09,277 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:09,277 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:09,278 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,278 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,278 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:09,278 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:09,279 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:09,279 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:09,279 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:09,279 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:09,280 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:09,280 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:09,280 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:09,280 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:09,280 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,281 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:09,281 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,281 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:09,281 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,282 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,282 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,282 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,282 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,282 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,283 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,283 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,283 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:09,283 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:09,284 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,284 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,284 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,284 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,285 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:09,285 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:09,285 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:09,285 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:09,286 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,286 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,286 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,286 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,286 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,287 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,287 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,287 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:09,287 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:09,288 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:09,288 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:09,288 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:09,288 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:09,289 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:09,289 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:09,289 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:09,289 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:09,289 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:09,290 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:09,290 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:09,290 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:09,290 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:09,291 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,291 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,291 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,291 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,292 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,292 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:09,292 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:09,292 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:09,292 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:09,293 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:09,293 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:09,293 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:09,293 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:09,294 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:09,294 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:09,294 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:09,294 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:09,295 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:09,295 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,295 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,295 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,295 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,296 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,296 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:09,296 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:09,296 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:09,297 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:09,297 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:09,297 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:09,297 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:09,298 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:09,298 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:09,298 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:09,298 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:09,299 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:09,299 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:09,299 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,299 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:09,299 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,300 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:09,302 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:09,303 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:09,303 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:40:09,910 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:40:10,447 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:40:10,457 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-26 17:40:10,647 build_log.py:267 INFO configuring... -== 2023-01-26 17:40:10,656 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:40:10,656 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:40:10,866 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:40:10,867 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:40:10,868 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:11,114 build_log.py:267 INFO building... -== 2023-01-26 17:40:11,122 build_log.py:267 INFO testing... -== 2023-01-26 17:40:11,130 build_log.py:267 INFO installing... -== 2023-01-26 17:40:11,138 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:40:11,139 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:11,139 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:40:11,957 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:40:11,958 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:40:11,977 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:40:18,814 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen/scgen-2.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: scgen - Building wheel for scgen (pyproject.toml): started - Building wheel for scgen (pyproject.toml): finished with status 'done' - Created wheel for scgen: filename=scgen-2.1.0-py3-none-any.whl size=24388 sha256=1cf2efc967feca0940e00e539e1e0c4115aead2110b0890d83cd42e006d9cc5e - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/90/b6/50/264078e8cb79952f66837774ffab4bafee3ffccf57b99d54a2 -Successfully built scgen -Installing collected packages: scgen -Successfully installed scgen-2.1.0 - -== 2023-01-26 17:40:18,814 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:40:18,815 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:40:18,816 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-26 17:40:18,824 easyblock.py:1852 INFO Starting extension bbknn -== 2023-01-26 17:40:18,825 build_log.py:267 INFO installing extension bbknn 1.5.1 (9/12)... -== 2023-01-26 17:40:20,587 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:40:20,587 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:40:20,588 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:40:20,590 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:40:20,593 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:40:20,617 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:40:20,629 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,629 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,629 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,629 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,630 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,630 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,630 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,630 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,631 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,631 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,631 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,631 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,632 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,632 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,632 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,632 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,632 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,633 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,633 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,633 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,633 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,634 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,634 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,634 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,634 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:20,634 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:20,635 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,635 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,635 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,635 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,636 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:20,636 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:20,636 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,636 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,637 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,637 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,637 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,637 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,638 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,638 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,638 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,638 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,639 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,639 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,639 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,639 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:20,639 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:20,640 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:20,640 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,640 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,640 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:20,641 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:20,641 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:20,641 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:20,641 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:20,642 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:20,642 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:20,642 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:20,642 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:20,642 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:20,643 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,643 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,643 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:20,643 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:20,644 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:20,644 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:20,644 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:20,644 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:20,645 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:20,645 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:20,645 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:20,645 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:20,645 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,646 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:20,646 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,646 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:20,646 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,647 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,647 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,647 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,647 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,648 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,648 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,648 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,648 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:20,648 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:20,649 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,649 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,649 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,649 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,650 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:20,650 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:20,650 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:20,650 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:20,651 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,651 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,651 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,651 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,652 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,652 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,652 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,652 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:20,652 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:20,653 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:20,653 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:20,653 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:20,653 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:20,654 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:20,654 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:20,654 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:20,654 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:20,655 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:20,655 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:20,655 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:20,655 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:20,655 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:20,656 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,656 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,656 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,656 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,657 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,657 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:20,657 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:20,657 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:20,658 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:20,658 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:20,658 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:20,658 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:20,658 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:20,659 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:20,659 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:20,659 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:20,659 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:20,660 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:20,660 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,660 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,660 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,661 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,661 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,661 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:20,661 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:20,661 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:20,662 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:20,662 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:20,662 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:20,662 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:20,663 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:20,663 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:20,663 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:20,663 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:20,664 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:20,664 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:20,664 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,664 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:20,665 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,665 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:20,668 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:20,668 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:20,669 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:40:21,371 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:40:22,102 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:40:22,113 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-26 17:40:22,326 build_log.py:267 INFO configuring... -== 2023-01-26 17:40:22,334 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:40:22,334 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:40:22,517 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:40:22,518 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:40:22,519 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:22,813 build_log.py:267 INFO building... -== 2023-01-26 17:40:22,821 build_log.py:267 INFO testing... -== 2023-01-26 17:40:22,829 build_log.py:267 INFO installing... -== 2023-01-26 17:40:22,837 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-26 17:40:22,838 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:40:22,838 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:22,839 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:40:23,650 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:40:23,651 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:40:23,662 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:40:30,612 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn/bbknn-1.5.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: bbknn - Building wheel for bbknn (setup.py): started - Building wheel for bbknn (setup.py): finished with status 'done' - Created wheel for bbknn: filename=bbknn-1.5.1-py3-none-any.whl size=11302 sha256=fe157ec95c4c2cd41d39bd071e500b39782abd42481cf6a124d3d83dafa5ae6f - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/a2/98/c3/e85f3a913b85dad73420961ba1f78aa94255ec11e5cdab58ef -Successfully built bbknn -Installing collected packages: bbknn -Successfully installed bbknn-1.5.1 - -== 2023-01-26 17:40:30,613 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:40:30,614 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:40:30,615 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-26 17:40:30,623 easyblock.py:1852 INFO Starting extension scanorama -== 2023-01-26 17:40:30,624 build_log.py:267 INFO installing extension scanorama 1.7.3 (10/12)... -== 2023-01-26 17:40:32,337 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:40:32,338 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:40:32,338 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:40:32,340 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:40:32,343 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:40:32,367 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:40:32,379 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,380 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,380 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,380 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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17:40:32,381 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,382 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,382 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,382 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,382 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,383 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,383 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,383 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,383 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,384 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,384 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,384 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,384 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,385 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,385 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,385 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,385 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:32,386 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:32,386 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,386 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,386 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,386 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,387 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:32,387 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:32,387 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,387 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,388 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,388 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,388 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,388 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,389 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,389 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,389 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,389 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,390 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,390 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,390 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,390 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:32,390 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:32,391 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:32,391 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,391 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,391 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:32,392 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:32,392 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:32,392 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:32,392 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:32,393 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:32,393 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:32,393 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:32,393 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:32,394 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:32,394 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,394 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,394 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:32,394 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:32,395 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:32,395 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:32,395 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:32,395 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:32,396 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:32,396 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:32,396 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:32,396 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:32,397 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,397 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:32,397 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,397 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:32,398 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,398 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,398 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,398 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,399 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,399 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,399 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,399 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,399 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:32,400 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:32,400 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,400 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,400 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,401 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,401 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:32,401 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:32,401 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:32,402 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:32,402 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,402 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,402 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,403 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,403 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,403 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,403 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,404 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:32,404 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:32,404 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:32,404 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:32,405 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:32,405 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:32,405 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:32,405 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:32,405 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:32,406 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:32,406 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:32,406 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:32,406 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:32,407 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:32,407 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:32,407 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,407 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,408 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,408 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,408 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,408 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:32,409 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:32,409 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:32,409 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:32,409 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:32,409 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:32,410 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:32,410 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:32,410 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:32,410 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:32,411 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:32,411 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:32,411 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:32,411 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,412 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,412 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,412 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,412 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,413 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:32,413 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:32,413 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:32,413 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:32,414 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:32,414 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:32,414 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:32,414 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:32,414 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:32,415 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:32,415 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:32,415 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:32,415 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:32,416 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,416 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:32,416 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,416 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:32,419 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:32,419 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:32,420 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:40:33,046 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:40:33,747 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:40:33,758 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-26 17:40:33,924 build_log.py:267 INFO configuring... -== 2023-01-26 17:40:33,932 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:40:33,933 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:40:34,130 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:40:34,130 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:40:34,131 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:34,396 build_log.py:267 INFO building... -== 2023-01-26 17:40:34,405 build_log.py:267 INFO testing... -== 2023-01-26 17:40:34,413 build_log.py:267 INFO installing... -== 2023-01-26 17:40:34,421 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:40:34,422 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:34,423 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:40:35,222 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:40:35,223 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:40:35,234 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:40:41,945 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama/scanorama-1.7.3 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scanorama - Building wheel for scanorama (setup.py): started - Building wheel for scanorama (setup.py): finished with status 'done' - Created wheel for scanorama: filename=scanorama-1.7.3-py3-none-any.whl size=12534 sha256=1f6fef5833e486414c051aafc33d7e4b55f46624bac54c5d691c315d463926ad - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/ac/de/e4/915d8c75e3fd468ac8458787f467bb930ef26e8676c79079a8 -Successfully built scanorama -Installing collected packages: scanorama -Successfully installed scanorama-1.7.3 - -== 2023-01-26 17:40:41,946 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:40:41,946 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:40:41,948 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-26 17:40:41,956 easyblock.py:1852 INFO Starting extension memory-profiler -== 2023-01-26 17:40:41,956 build_log.py:267 INFO installing extension memory-profiler 0.61.0 (11/12)... -== 2023-01-26 17:40:43,634 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-26 17:40:43,635 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-26 17:40:43,636 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-26 17:40:43,638 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-26 17:40:43,641 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-26 17:40:43,664 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-26 17:40:43,676 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,677 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,677 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,677 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,677 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,678 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,678 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,678 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,678 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,679 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,679 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,679 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,679 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,680 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,680 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,680 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,680 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,680 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,681 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,681 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,681 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,681 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,682 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,682 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,682 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:43,682 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:43,683 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,683 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,683 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,683 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,683 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:43,684 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:43,684 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,684 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,684 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,685 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,685 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,685 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,685 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,686 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,686 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,686 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,686 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,687 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,687 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,687 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:43,687 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:43,687 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:43,688 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,688 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,688 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:43,688 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:43,689 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:43,689 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:43,689 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:43,689 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:43,690 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:43,690 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:43,690 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:43,690 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:43,690 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,691 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,691 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:43,691 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:43,691 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:43,692 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:43,692 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:43,692 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:43,692 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:43,692 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:43,693 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:43,693 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:43,693 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,693 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:43,694 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,694 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:43,694 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,694 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,695 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,695 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,695 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,695 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,695 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,696 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,696 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:43,696 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:43,696 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,697 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,697 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,697 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,697 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:43,698 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:43,698 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:43,698 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:43,698 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,699 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,699 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,699 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,699 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,700 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,700 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,700 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:43,700 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:43,700 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:43,701 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:43,701 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:43,701 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:43,701 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:43,702 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:43,702 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:43,702 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:43,702 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:43,703 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:43,703 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:43,703 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:43,703 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:43,703 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,704 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,704 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,704 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,704 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,705 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:43,705 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:43,705 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:43,705 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:43,706 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:43,706 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:43,706 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:43,706 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:43,706 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:43,707 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:43,707 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:43,707 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:43,707 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:43,708 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,708 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,708 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,708 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,709 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,709 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:43,709 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:43,709 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:43,710 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:43,710 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:43,710 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:43,710 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:43,711 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:43,711 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:43,711 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:43,711 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:43,711 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:43,712 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:43,712 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,712 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:43,712 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,713 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:43,715 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:43,716 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:43,716 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:40:44,487 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:40:45,057 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:40:45,068 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-26 17:40:45,198 build_log.py:267 INFO configuring... -== 2023-01-26 17:40:45,206 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:40:45,207 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:40:45,389 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:40:45,390 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:40:45,391 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:45,677 build_log.py:267 INFO building... -== 2023-01-26 17:40:45,685 build_log.py:267 INFO testing... -== 2023-01-26 17:40:45,694 build_log.py:267 INFO installing... -== 2023-01-26 17:40:45,709 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-26 17:40:45,710 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:40:45,710 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:45,710 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:40:46,488 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:40:46,489 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:40:46,500 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:40:53,727 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler/memory_profiler-0.61.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: memory-profiler - Building wheel for memory-profiler (pyproject.toml): started - Building wheel for memory-profiler (pyproject.toml): finished with status 'done' - Created wheel for memory-profiler: filename=memory_profiler-0.61.0-py3-none-any.whl size=31822 sha256=a286b3bdfa8c3fc61940178eb785d5048c24ed4515603789faa86c3d5e754c7c - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/f5/92/9d/8021a783c9757653a2695a0ce478a28faddbcbaf7491af5e7d -Successfully built memory-profiler -Installing collected packages: memory-profiler -Successfully installed memory-profiler-0.61.0 - -== 2023-01-26 17:40:53,728 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:40:53,729 environment.py:93 INFO Environment variable PYTHONPATH set to 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EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,464 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,464 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,465 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,465 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,465 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,465 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,466 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,466 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,466 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,467 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,467 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:55,467 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:55,467 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,467 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,468 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:55,468 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:55,468 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:55,468 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:55,469 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,469 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,469 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,469 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,470 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,470 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,470 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,470 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,470 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,471 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,471 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,471 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,471 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,472 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-26 17:40:55,479 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:55,479 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:55,479 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,480 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,480 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:55,480 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:55,480 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:55,481 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:55,481 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:55,481 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:55,481 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:55,482 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:55,482 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:55,482 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-26 17:40:55,482 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,482 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,483 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:55,483 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-26 17:40:55,483 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:55,483 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-26 17:40:55,484 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:55,484 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-26 17:40:55,484 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:55,484 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-26 17:40:55,485 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:55,485 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-26 17:40:55,485 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:55,485 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:40:55,485 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,486 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-26 17:40:55,486 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,486 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,486 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,487 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,487 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,487 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,487 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,488 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,488 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:55,488 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:40:55,488 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,489 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,489 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,489 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,489 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:55,490 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-26 17:40:55,490 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:55,490 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-26 17:40:55,490 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,490 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,491 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,491 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,491 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,491 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,492 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,492 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-26 17:40:55,492 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:55,492 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-26 17:40:55,493 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:55,493 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-26 17:40:55,493 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:55,493 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-26 17:40:55,493 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:55,494 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:55,494 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:55,494 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-26 17:40:55,494 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:55,495 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-26 17:40:55,495 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:55,495 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-26 17:40:55,495 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,496 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,496 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,496 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,496 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,496 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-26 17:40:55,497 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:55,497 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-26 17:40:55,497 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:55,497 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-26 17:40:55,498 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:55,498 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-26 17:40:55,498 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:55,498 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-26 17:40:55,499 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:55,499 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-26 17:40:55,499 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:55,499 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-26 17:40:55,499 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,500 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,500 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,500 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,500 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,501 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-26 17:40:55,501 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:55,501 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-26 17:40:55,501 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:55,502 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-26 17:40:55,502 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:55,502 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-26 17:40:55,502 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:55,502 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-26 17:40:55,503 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:55,503 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-26 17:40:55,503 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:55,503 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-26 17:40:55,504 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,504 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-26 17:40:55,504 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,504 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-26 17:40:55,507 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:55,507 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-26 17:40:55,508 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-26 17:40:56,254 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-26 17:40:56,913 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:40:56,924 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-26 17:40:58,968 build_log.py:267 INFO configuring... -== 2023-01-26 17:40:58,976 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-26 17:40:58,976 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-26 17:40:59,199 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-26 17:40:59,200 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-26 17:40:59,200 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-26 17:40:59,483 build_log.py:267 INFO building... -== 2023-01-26 17:40:59,491 build_log.py:267 INFO testing... -== 2023-01-26 17:40:59,499 build_log.py:267 INFO installing... -== 2023-01-26 17:40:59,507 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-26 17:40:59,509 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:40:59,509 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:41:00,331 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:41:00,332 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-26 17:41:00,344 run.py:236 INFO running cmd: sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-26 17:41:07,529 run.py:648 INFO cmd "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline/scib-pipeline-0.2.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scIB - Building wheel for scIB (setup.py): started - Building wheel for scIB (setup.py): finished with status 'done' - Created wheel for scIB: filename=scIB-0.1.1-py3-none-any.whl size=33634 sha256=da44f52ad25cf752eda9b08aed78903ed87fcb140e761d07710532455b9739d3 - Stored in directory: /tmp/vsc43810/eb-a0cn2933/pip/wheels/f2/ce/97/378c3d0549dbd88cb4f21948c441418f962f2998bf438ead28 -Successfully built scIB -Installing collected packages: scIB -Successfully installed scIB-0.1.1 - -== 2023-01-26 17:41:07,530 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:41:07,531 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-26 17:41:07,531 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:41:07,532 build_log.py:267 INFO ... 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(previous value: 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-== 2023-01-26 17:41:10,230 environment.py:93 INFO Environment variable MANPATH set to 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-== 2023-01-26 17:41:10,230 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-26 17:41:10,231 environment.py:93 INFO Environment variable _LMFILES_ set to 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-== 2023-01-26 17:41:10,232 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_ACLOCAL_PATH set to 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(previous value: 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-== 2023-01-26 17:41:10,233 environment.py:93 INFO Environment variable CMAKE_PREFIX_PATH set to 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-== 2023-01-26 17:41:10,233 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_CPATH set to 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-== 2023-01-26 17:41:10,236 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-26 17:41:10,237 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MANPATH set to 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-== 2023-01-26 17:41:10,238 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PKG_CONFIG_PATH set to 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-== 2023-01-26 17:41:10,238 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to 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2023-01-26 17:41:10,296 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:41:10,297 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-26 17:41:10,299 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:41:10,299 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 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-L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-26 17:41:10,316 build_log.py:267 INFO ... (took 5 mins 9 secs) -== 2023-01-26 17:41:10,323 build_log.py:267 INFO restore after iterating... -== 2023-01-26 17:41:10,329 easyblock.py:3877 INFO Starting postiter step -== 2023-01-26 17:41:10,330 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:41:10,331 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:41:10,331 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:41:10,331 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:41:10,332 easyblock.py:3885 INFO Running method post_iter_step part of step postiter -== 2023-01-26 17:41:10,332 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:41:10,338 build_log.py:267 INFO postprocessing... -== 2023-01-26 17:41:10,343 easyblock.py:3877 INFO Starting postproc step -== 2023-01-26 17:41:10,344 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:41:10,344 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:41:10,344 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:41:10,344 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:41:10,345 easyblock.py:3885 INFO Running method post_install_step part of step postproc -== 2023-01-26 17:41:10,345 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-26 17:41:10,347 filetools.py:339 INFO Symlinked lib to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib64 -== 2023-01-26 17:41:10,347 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-26 17:41:10,350 build_log.py:267 INFO sanity checking... -== 2023-01-26 17:41:10,354 easyblock.py:3877 INFO Starting sanitycheck step -== 2023-01-26 17:41:10,354 easyconfig.py:1688 INFO Generating template values... -== 2023-01-26 17:41:10,354 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-26 17:41:10,354 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-26 17:41:10,355 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-26 17:41:10,355 easyblock.py:3885 INFO Running method sanity_check_step part of step sanitycheck -== 2023-01-26 17:41:10,355 easyblock.py:3286 INFO Using (only) sanity check paths specified by easyconfig file: {'files': [], 'dirs': ['lib/python3.10/site-packages']} -== 2023-01-26 17:41:10,359 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-26 17:41:12,155 easyblock.py:1574 INFO Fixed symlink lib64 in paths for CMAKE_LIBRARY_PATH: ['lib64'] -> [] -== 2023-01-26 17:41:12,157 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LD_LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-26 17:41:12,157 easyblock.py:1588 INFO Only retaining paths for LD_LIBRARY_PATH that contain at least one file: ['lib'] -> [] -== 2023-01-26 17:41:12,158 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-26 17:41:12,160 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-26 17:41:12,161 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, 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isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -prepend_path("CMAKE_PREFIX_PATH", root) -prepend_path("LIBRARY_PATH", pathJoin(root, "lib")) -prepend_path("PATH", pathJoin(root, "bin")) -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 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-== 2023-01-26 17:41:19,758 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-26 17:41:19,759 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-26 17:41:19,759 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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ion/3.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/graphite2/1.3.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DBus/1.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSPR/4.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSS/3.79-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qt5/5.15.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib/1.1.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-misc/0.1.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/OpenPGM/5.2.122-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libsodium/1.0.18-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/ZeroMQ/4.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxslt/1.1.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lxml/4.9.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/BeautifulSoup/4.10.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/IPython/8.5.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/rpy2/3.5.7-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/git/2.36.0-GCCcore-11.3.0-nodocs.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GitPython/3.1.27-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/snakemake/7.20.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ICU/71.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Java/11.0.2.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Graphviz/5.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GSL/2.7-GCC-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/pydot/1.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Deprecated/1.2.13-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow-SIMD/9.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/torchvision/0.13.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/adjustText/0.7.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/trvaep/0.1.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/flatbuffers-python/2.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/jax/0.3.23-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/openpyxl/3.0.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tensorboard/2.10.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/typing-extensions/4.3.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTorch-Lightning/1.7.7-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/dm-tree/0.1.8-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scvi-tools/0.19.0-foss-2022a.lua') -== 2023-01-26 17:41:19,788 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-a0cn2933/tmpyxviqeqg/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-26 17:41:33,117 environment.py:93 INFO Environment variable OMPI_MCA_rmaps_base_oversubscribe set to 1 (previously undefined) -== 2023-01-26 17:41:33,118 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-26 17:41:33,118 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-26 17:41:33,120 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-26 17:41:33,120 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-26 17:41:42,015 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-26 17:41:42,025 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-26 17:41:53,436 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-26 17:41:53,437 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-26 17:41:55,848 pythonpackage.py:910 INFO Found 1 invalid packages out of 309 packages -== 2023-01-26 17:41:55,896 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): The following Python packages were likely not installed correctly because they show a version of '0.0.0': -anndata2ri -This may be solved by using a *-none-any.whl file as the source instead. See e.g. the SOURCE*_WHL templates. -Otherwise you could check if the package provides a version at all or if e.g. poetry is required (check the source for a pyproject.toml and see PEP517 for details on that). (at easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonpackage.py:923 in sanity_check_step) -== 2023-01-26 17:41:55,897 build_log.py:267 INFO ... (took 45 secs) -== 2023-01-26 17:41:55,903 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-26 17:41:55,906 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock successfully removed. -== 2023-01-26 17:41:55,907 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-26 17:41:55,907 easyblock.py:4208 WARNING build failed (first 300 chars): The following Python packages were likely not installed correctly because they show a version of '0.0.0': -anndata2ri -This may be solved by using a *-none-any.whl file as the source instead. See e.g. the SOURCE*_WHL templates. -Otherwise you could check if the package provides a version at all or if e -== 2023-01-26 17:41:55,908 easyblock.py:328 INFO Closing log for application name scib-pipeline version 0.2.0 diff --git a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230127.150947.njFeI.log b/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230127.150947.njFeI.log deleted file mode 100644 index bd765a00..00000000 --- a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230127.150947.njFeI.log +++ /dev/null @@ -1,10127 +0,0 @@ -== 2023-01-27 15:09:47,465 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host node3702.slaking.os. -== 2023-01-27 15:09:47,465 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-27 15:09:47,466 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-27 15:09:47,466 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-27 15:09:47,466 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:09:47,467 easyblock.py:288 INFO Init completed for application name scib-pipeline version 0.2.0 -== 2023-01-27 15:09:47,467 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-27 15:09:47,468 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/scib-pipeline'], 'options': {}} -== 2023-01-27 15:09:47,468 easyblock.py:4151 INFO Obtained application instance of for scib-pipeline (easyblock: PythonBundle) -== 2023-01-27 15:09:47,468 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:47,469 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:47,469 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:47,470 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:47,476 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-27 15:09:47,478 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229 (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:09:47,479 easyblock.py:4405 INFO Dumped easyconfig instance to /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/scib-pipeline-0.2.0-foss-2022a.eb -== 2023-01-27 15:09:47,482 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/easyblocks (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:09:47,499 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/easyblocks/bundle.py -== 2023-01-27 15:09:47,500 easyblock.py:4385 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/easyblocks -== 2023-01-27 15:09:47,508 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/easyblocks/pythonbundle.py -== 2023-01-27 15:09:47,509 easyblock.py:4385 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc43810/eb-lhsf9mgk/reprod_20230127150947_3352229/easyblocks -== 2023-01-27 15:09:47,512 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1 -== 2023-01-27 15:09:47,514 build_log.py:267 INFO building and installing scib-pipeline/0.2.0-foss-2022a... -== 2023-01-27 15:09:47,528 filetools.py:2011 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock does not exist -== 2023-01-27 15:09:47,528 filetools.py:1952 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-27 15:09:47,528 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:09:47,657 filetools.py:1961 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-27 15:09:47,657 build_log.py:267 INFO fetching files... -== 2023-01-27 15:09:47,663 easyblock.py:3877 INFO Starting fetch step -== 2023-01-27 15:09:47,663 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:47,664 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:47,664 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:47,665 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:47,665 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-27 15:09:47,665 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-27 15:09:47,666 easyblock.py:2327 INFO no sources provided -== 2023-01-27 15:09:47,666 easyblock.py:2342 INFO no patches provided -== 2023-01-27 15:09:47,667 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata-0.8.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:47,667 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:47,668 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:47,669 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:47,682 easyblock.py:844 INFO Found file anndata-0.8.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-27 15:09:47,699 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: ef1130964bcb6c3ca3ed161b74e46a06 -== 2023-01-27 15:09:47,700 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: 94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e -== 2023-01-27 15:09:47,701 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:47,701 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:47,709 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:47,710 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,147 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/s/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/s/scib-pipeline/checksums.json, /apps/gent/sources/scib-pipeline/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-27 15:09:48,147 easyblock.py:685 INFO Checksum for extension source anndata-0.8.0.tar.gz verified -== 2023-01-27 15:09:48,147 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,148 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata2ri-1.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,149 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,149 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,149 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,151 easyblock.py:844 INFO Found file anndata2ri-1.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-27 15:09:48,168 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: 8145ef2c660bd7cba7b2cf10b027295e -== 2023-01-27 15:09:48,169 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: bf5e5d5184efe49eb00f7d524225a9867e3dd77c6ed291eb251168fe4dc429e7 -== 2023-01-27 15:09:48,169 easyblock.py:685 INFO Checksum for extension source anndata2ri-1.1.tar.gz verified -== 2023-01-27 15:09:48,170 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,170 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for get_version-3.5.4.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,171 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,171 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,171 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,174 easyblock.py:844 INFO Found file get_version-3.5.4.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-27 15:09:48,183 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 164c51221bd5aa2281c59c68d48a05a4 -== 2023-01-27 15:09:48,184 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 5901c846518d55d52c1f6f037f5d2433952b46bbf36e38c52f064ae836556343 -== 2023-01-27 15:09:48,184 easyblock.py:685 INFO Checksum for extension source get_version-3.5.4.tar.gz verified -== 2023-01-27 15:09:48,185 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,185 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,186 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,186 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,186 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,188 easyblock.py:844 INFO Found file trvaep-0.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-27 15:09:48,216 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: df09bb666d1db2ad1190f3e718586a9f -== 2023-01-27 15:09:48,230 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: e4ee8e823e67e4f11b23cdf408d900f7aba9f31449eeeb54e5bbc8aa84dfc811 -== 2023-01-27 15:09:48,230 easyblock.py:685 INFO Checksum for extension source trvaep-0.1.0.tar.gz verified -== 2023-01-27 15:09:48,230 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,231 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for annoy-1.17.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,231 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,232 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,232 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,234 easyblock.py:844 INFO Found file annoy-1.17.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-27 15:09:48,254 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: 5b7239c506f3f09b6fffd7caea8a7adf -== 2023-01-27 15:09:48,260 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: bf177dbeafb81f63b2ac1e1246b1f26a2acc82e73ba46638734d29d8258122da -== 2023-01-27 15:09:48,260 easyblock.py:685 INFO Checksum for extension source annoy-1.17.1.tar.gz verified -== 2023-01-27 15:09:48,261 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,261 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for geosketch-1.2.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,262 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,262 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,262 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,264 easyblock.py:844 INFO Found file geosketch-1.2.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-27 15:09:48,278 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: 792544b199cb93521903d77d7ae6dace -== 2023-01-27 15:09:48,279 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: bbfe97366b91c5927b6076d5a6738d9cfbe094efb5ac1117aab7a30b6081cc4e -== 2023-01-27 15:09:48,279 easyblock.py:685 INFO Checksum for extension source geosketch-1.2.tar.gz verified -== 2023-01-27 15:09:48,280 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,280 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for fbpca-1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,281 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,281 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,281 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,284 easyblock.py:844 INFO Found file fbpca-1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-27 15:09:48,296 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 8312632180ca9853201400914a75d5e4 -== 2023-01-27 15:09:48,296 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 150677642479663f317fdbb5e06dab3f98721cf7031bb4a84113d7a631c472d1 -== 2023-01-27 15:09:48,297 easyblock.py:685 INFO Checksum for extension source fbpca-1.0.tar.gz verified -== 2023-01-27 15:09:48,297 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,298 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scgen-2.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,298 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,298 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,299 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,301 easyblock.py:844 INFO Found file scgen-2.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-27 15:09:48,314 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 536ec702d840c41f81e1b6c2200c6718 -== 2023-01-27 15:09:48,315 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 0f3f23ee596b20906c22b6a324ca930b70b78c93e18d9c1846214ee84ab872bf -== 2023-01-27 15:09:48,316 easyblock.py:685 INFO Checksum for extension source scgen-2.1.0.tar.gz verified -== 2023-01-27 15:09:48,316 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,317 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for bbknn-1.5.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,317 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,317 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,318 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,319 easyblock.py:844 INFO Found file bbknn-1.5.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-27 15:09:48,339 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 9776fdf80cf3e15ef9fb307ab36be6f0 -== 2023-01-27 15:09:48,339 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 16da9c778ddfe363f8a3fa0d72707694d2217f94d3a87482336e8a2c6beb2160 -== 2023-01-27 15:09:48,340 easyblock.py:685 INFO Checksum for extension source bbknn-1.5.1.tar.gz verified -== 2023-01-27 15:09:48,340 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,341 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scanorama-1.7.3.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,341 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,341 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,342 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,344 easyblock.py:844 INFO Found file scanorama-1.7.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-27 15:09:48,360 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: f0f5d506bcfe7ca8d19efa47fe9ee4fe -== 2023-01-27 15:09:48,361 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: e1d1cdd6855b3a302f6e9e3160442a9998113e5118ac48c71bf8a21760a657b7 -== 2023-01-27 15:09:48,361 easyblock.py:685 INFO Checksum for extension source scanorama-1.7.3.tar.gz verified -== 2023-01-27 15:09:48,361 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,362 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for memory-profiler-0.61.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,362 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,363 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,363 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,371 easyblock.py:844 INFO Found file memory-profiler-0.61.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-27 15:09:48,380 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 5fe93d5035288095c4f86ef69ee19f37 -== 2023-01-27 15:09:48,381 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 4e5b73d7864a1d1292fb76a03e82a3e78ef934d06828a698d9dada76da2067b0 -== 2023-01-27 15:09:48,381 easyblock.py:685 INFO Checksum for extension source memory-profiler-0.61.0.tar.gz verified -== 2023-01-27 15:09:48,381 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:48,382 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.2.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-27 15:09:48,382 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-27 15:09:48,383 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-27 15:09:48,383 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-27 15:09:48,385 easyblock.py:844 INFO Found file 0.2.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-27 15:09:48,900 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: ed1e3a1e7b718dc7f72babd02939d635 -== 2023-01-27 15:09:49,404 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: d2700e0f9c9bc2ee2a1d96a91f05448abd7c9ccd83208da42aaac53724f2f772 -== 2023-01-27 15:09:49,404 easyblock.py:685 INFO Checksum for extension source 0.2.0.tar.gz verified -== 2023-01-27 15:09:49,404 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-27 15:09:49,405 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline'] -== 2023-01-27 15:09:49,410 build_log.py:267 INFO ... (took 1 secs) -== 2023-01-27 15:09:49,414 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-27 15:09:49,417 easyblock.py:3877 INFO Starting ready step -== 2023-01-27 15:09:49,417 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:49,417 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:49,417 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:49,418 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:49,418 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-27 15:09:49,426 run.py:236 INFO running cmd: ulimit -u -== 2023-01-27 15:09:49,434 easyblock.py:2196 INFO Setting parallelism: 8 -== 2023-01-27 15:09:49,523 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-27 15:09:49,524 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-27 15:09:49,525 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:09:49,531 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-27 15:09:49,532 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-27 15:09:49,533 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:49,534 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:49,534 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:49,534 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:49,535 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:09:49,541 build_log.py:267 INFO unpacking... -== 2023-01-27 15:09:49,547 easyblock.py:3877 INFO Starting source step -== 2023-01-27 15:09:49,547 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:49,548 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:49,548 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:49,549 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:49,549 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-27 15:09:49,550 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-27 15:09:49,550 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:09:49,556 build_log.py:267 INFO patching... -== 2023-01-27 15:09:49,562 easyblock.py:3877 INFO Starting patch step -== 2023-01-27 15:09:49,562 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:49,563 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:49,563 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:49,563 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:49,564 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-27 15:09:49,564 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:09:49,570 build_log.py:267 INFO preparing... -== 2023-01-27 15:09:49,576 easyblock.py:3877 INFO Starting prepare step -== 2023-01-27 15:09:49,576 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:09:49,577 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:09:49,577 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:09:49,577 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:09:49,578 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-27 15:09:49,581 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:09:49,582 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-27 15:09:49,582 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-27 15:09:49,582 modules.py:628 INFO Checking whether PyTorch/1.12.0-foss-2022a exists... -== 2023-01-27 15:09:49,582 modules.py:633 INFO Module PyTorch/1.12.0-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,582 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-foss-2022a module: True -== 2023-01-27 15:09:49,583 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-27 15:09:49,583 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,583 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-27 15:09:49,583 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists... -== 2023-01-27 15:09:49,584 modules.py:633 INFO Module R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists (found in list of available modules) -== 2023-01-27 15:09:49,584 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 module: True -== 2023-01-27 15:09:49,584 modules.py:628 INFO Checking whether R/4.2.1-foss-2022a exists... -== 2023-01-27 15:09:49,584 modules.py:633 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,584 modules.py:656 INFO Result for existence check of R/4.2.1-foss-2022a module: True -== 2023-01-27 15:09:49,585 modules.py:628 INFO Checking whether scib/1.1.1-foss-2022a exists... -== 2023-01-27 15:09:49,585 modules.py:633 INFO Module scib/1.1.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,585 modules.py:656 INFO Result for existence check of scib/1.1.1-foss-2022a module: True -== 2023-01-27 15:09:49,585 modules.py:628 INFO Checking whether scikit-learn/1.1.2-foss-2022a exists... -== 2023-01-27 15:09:49,586 modules.py:633 INFO Module scikit-learn/1.1.2-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,586 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-foss-2022a module: True -== 2023-01-27 15:09:49,586 modules.py:628 INFO Checking whether scikit-misc/0.1.4-foss-2022a exists... -== 2023-01-27 15:09:49,586 modules.py:633 INFO Module scikit-misc/0.1.4-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,586 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-foss-2022a module: True -== 2023-01-27 15:09:49,587 modules.py:628 INFO Checking whether rpy2/3.5.7-foss-2022a exists... -== 2023-01-27 15:09:49,587 modules.py:633 INFO Module rpy2/3.5.7-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,587 modules.py:656 INFO Result for existence check of rpy2/3.5.7-foss-2022a module: True -== 2023-01-27 15:09:49,587 modules.py:628 INFO Checking whether snakemake/7.20.0-foss-2022a exists... -== 2023-01-27 15:09:49,588 modules.py:633 INFO Module snakemake/7.20.0-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,588 modules.py:656 INFO Result for existence check of snakemake/7.20.0-foss-2022a module: True -== 2023-01-27 15:09:49,588 modules.py:628 INFO Checking whether networkx/2.8.4-foss-2022a exists... -== 2023-01-27 15:09:49,588 modules.py:633 INFO Module networkx/2.8.4-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,588 modules.py:656 INFO Result for existence check of networkx/2.8.4-foss-2022a module: True -== 2023-01-27 15:09:49,589 modules.py:628 INFO Checking whether ICU/71.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:09:49,589 modules.py:633 INFO Module ICU/71.1-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-27 15:09:49,589 modules.py:656 INFO Result for existence check of ICU/71.1-GCCcore-11.3.0 module: True -== 2023-01-27 15:09:49,589 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:09:49,589 modules.py:633 INFO Module Graphviz/5.0.0-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-27 15:09:49,590 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCCcore-11.3.0 module: True -== 2023-01-27 15:09:49,590 modules.py:628 INFO Checking whether GSL/2.7-GCC-11.3.0 exists... -== 2023-01-27 15:09:49,590 modules.py:633 INFO Module GSL/2.7-GCC-11.3.0 exists (found in list of available modules) -== 2023-01-27 15:09:49,590 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-11.3.0 module: True -== 2023-01-27 15:09:49,590 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-27 15:09:49,591 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,591 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-27 15:09:49,591 modules.py:628 INFO Checking whether numba/0.56.4-foss-2022a exists... -== 2023-01-27 15:09:49,591 modules.py:633 INFO Module numba/0.56.4-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,592 modules.py:656 INFO Result for existence check of numba/0.56.4-foss-2022a module: True -== 2023-01-27 15:09:49,592 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-27 15:09:49,592 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,592 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-27 15:09:49,592 modules.py:628 INFO Checking whether h5py/3.7.0-foss-2022a exists... -== 2023-01-27 15:09:49,593 modules.py:633 INFO Module h5py/3.7.0-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,593 modules.py:656 INFO Result for existence check of h5py/3.7.0-foss-2022a module: True -== 2023-01-27 15:09:49,593 modules.py:628 INFO Checking whether leidenalg/0.9.1-foss-2022a exists... -== 2023-01-27 15:09:49,593 modules.py:633 INFO Module leidenalg/0.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,594 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-foss-2022a module: True -== 2023-01-27 15:09:49,594 modules.py:628 INFO Checking whether umap-learn/0.5.3-foss-2022a exists... -== 2023-01-27 15:09:49,594 modules.py:633 INFO Module umap-learn/0.5.3-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,594 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-foss-2022a module: True -== 2023-01-27 15:09:49,594 modules.py:628 INFO Checking whether pydot/1.4.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:09:49,595 modules.py:633 INFO Module pydot/1.4.2-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-27 15:09:49,595 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCCcore-11.3.0 module: True -== 2023-01-27 15:09:49,595 modules.py:628 INFO Checking whether igraph/0.10.3-foss-2022a exists... -== 2023-01-27 15:09:49,595 modules.py:633 INFO Module igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,596 modules.py:656 INFO Result for existence check of igraph/0.10.3-foss-2022a module: True -== 2023-01-27 15:09:49,596 modules.py:628 INFO Checking whether python-igraph/0.10.3-foss-2022a exists... -== 2023-01-27 15:09:49,596 modules.py:633 INFO Module python-igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,596 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-foss-2022a module: True -== 2023-01-27 15:09:49,596 modules.py:628 INFO Checking whether Deprecated/1.2.13-foss-2022a exists... -== 2023-01-27 15:09:49,597 modules.py:633 INFO Module Deprecated/1.2.13-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,597 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-foss-2022a module: True -== 2023-01-27 15:09:49,597 modules.py:628 INFO Checking whether torchvision/0.13.1-foss-2022a exists... -== 2023-01-27 15:09:49,597 modules.py:633 INFO Module torchvision/0.13.1-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,597 modules.py:656 INFO Result for existence check of torchvision/0.13.1-foss-2022a module: True -== 2023-01-27 15:09:49,598 modules.py:628 INFO Checking whether trvaep/0.1.0-foss-2022a exists... -== 2023-01-27 15:09:49,598 modules.py:633 INFO Module trvaep/0.1.0-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,598 modules.py:656 INFO Result for existence check of trvaep/0.1.0-foss-2022a module: True -== 2023-01-27 15:09:49,598 modules.py:628 INFO Checking whether scvi-tools/0.19.0-foss-2022a exists... -== 2023-01-27 15:09:49,599 modules.py:633 INFO Module scvi-tools/0.19.0-foss-2022a exists (found in list of available modules) -== 2023-01-27 15:09:49,599 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-foss-2022a module: True -== 2023-01-27 15:09:49,599 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:09:49,600 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:09:53,207 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:09:59,672 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-27 15:10:03,788 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib') -== 2023-01-27 15:10:07,189 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-27 15:10:13,678 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: 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-== 2023-01-27 15:10:18,467 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-27 15:10:26,034 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib') -== 2023-01-27 15:10:42,922 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib') -== 2023-01-27 15:10:59,343 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/has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(previous value: '/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib') -== 2023-01-27 15:11:04,905 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-27 15:11:10,492 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib') -== 2023-01-27 15:11:52,456 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib') -== 2023-01-27 15:12:19,836 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:12:19,837 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:12:19,837 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:12:19,841 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:12:19,846 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:12:19,882 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:12:19,894 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/include was not found -== 2023-01-27 15:12:19,895 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-27 15:12:19,899 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/include was not found -== 2023-01-27 15:12:19,899 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib64 was not found -== 2023-01-27 15:12:19,900 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib was not found -== 2023-01-27 15:12:19,900 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/include was not found -== 2023-01-27 15:12:19,903 variables.py:203 WARNING flags_for_subdirs: directory 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/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/include was not found -== 2023-01-27 15:12:19,928 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-27 15:12:19,930 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/include was not found -== 2023-01-27 15:12:19,932 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-27 15:12:19,935 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/include was not found -== 2023-01-27 15:12:19,939 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/include was not found -== 2023-01-27 15:12:19,942 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/include was not found -== 2023-01-27 15:12:19,945 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/include was not found -== 2023-01-27 15:12:19,954 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/include was not found -== 2023-01-27 15:12:19,957 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/include was not found -== 2023-01-27 15:12:19,958 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/include was not found -== 2023-01-27 15:12:19,960 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/include was not found -== 2023-01-27 15:12:19,971 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,971 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,972 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,972 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,972 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,972 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,973 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,973 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,973 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,973 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,974 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,974 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,974 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,974 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,975 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,975 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,975 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,976 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,976 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,976 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,976 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,977 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,977 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,977 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,977 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-27 15:12:19,978 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-27 15:12:19,978 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,978 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,978 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,979 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,979 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-27 15:12:19,979 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-27 15:12:19,979 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,980 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,980 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-27 15:12:19,980 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-27 15:12:19,980 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-27 15:12:19,981 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-27 15:12:19,981 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,981 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,982 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-27 15:12:19,982 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-27 15:12:19,982 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,982 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,983 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,983 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:12:19,983 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:19,983 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:19,984 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,984 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,984 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:12:19,984 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:12:19,985 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:19,985 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:19,985 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:12:19,985 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:12:19,986 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:19,986 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:19,986 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:19,986 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:19,987 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,987 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,987 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:12:19,988 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:12:19,988 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:19,988 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:19,988 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:12:19,989 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:12:19,989 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:19,989 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:19,989 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-27 15:12:19,990 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-27 15:12:19,990 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,990 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:12:19,990 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,991 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,991 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,991 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,991 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,992 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,992 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,992 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:19,992 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,993 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:19,993 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,993 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-27 15:12:19,994 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,994 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,994 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,994 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,995 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-27 15:12:19,995 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-27 15:12:19,995 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-27 15:12:19,995 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-27 15:12:19,996 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,996 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,996 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,997 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,997 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,997 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,997 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,998 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,998 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-27 15:12:19,998 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-27 15:12:19,998 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,999 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:12:19,999 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-27 15:12:19,999 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-27 15:12:19,999 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:12:20,000 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:12:20,000 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:12:20,000 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:12:20,000 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-27 15:12:20,001 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-27 15:12:20,001 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-27 15:12:20,001 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-27 15:12:20,001 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-27 15:12:20,002 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-27 15:12:20,002 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-27 15:12:20,002 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-27 15:12:20,003 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-27 15:12:20,003 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-27 15:12:20,003 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:20,003 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:12:20,004 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-27 15:12:20,004 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-27 15:12:20,004 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-27 15:12:20,004 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-27 15:12:20,005 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-27 15:12:20,005 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-27 15:12:20,005 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-27 15:12:20,005 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-27 15:12:20,006 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-27 15:12:20,006 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-27 15:12:20,006 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-27 15:12:20,007 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-27 15:12:20,007 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-27 15:12:20,007 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-27 15:12:20,007 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-27 15:12:20,008 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-27 15:12:20,008 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-27 15:12:20,008 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-27 15:12:20,008 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-27 15:12:20,009 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-27 15:12:20,009 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-27 15:12:20,009 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-27 15:12:20,010 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-27 15:12:20,010 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-27 15:12:20,010 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:20,010 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-27 15:12:20,011 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:20,011 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-27 15:12:20,011 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:20,011 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:12:20,012 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:20,012 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:12:20,013 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/ as start dir -== 2023-01-27 15:12:20,018 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:12:20,019 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:12:25,255 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:12:26,277 build_log.py:267 INFO ... (took 2 mins 36 secs) -== 2023-01-27 15:12:26,284 build_log.py:267 INFO configuring... -== 2023-01-27 15:12:26,290 easyblock.py:3877 INFO Starting configure step -== 2023-01-27 15:12:26,290 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:26,291 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:26,291 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:26,292 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:26,292 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-27 15:12:26,292 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:12:26,298 build_log.py:267 INFO building... -== 2023-01-27 15:12:26,304 easyblock.py:3877 INFO Starting build step -== 2023-01-27 15:12:26,304 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:26,305 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:26,305 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:26,306 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:26,306 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-27 15:12:26,306 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:12:26,312 build_log.py:267 INFO testing... -== 2023-01-27 15:12:26,318 easyblock.py:3877 INFO Starting test step -== 2023-01-27 15:12:26,318 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:26,319 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:26,319 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:26,319 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:26,320 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-27 15:12:26,320 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:12:26,326 build_log.py:267 INFO installing... -== 2023-01-27 15:12:26,332 easyblock.py:3877 INFO Starting install step -== 2023-01-27 15:12:26,332 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:26,332 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:26,333 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:26,333 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:26,333 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-27 15:12:26,334 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-27 15:12:26,336 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-27 15:12:27,320 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a successfully removed. -== 2023-01-27 15:12:27,320 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-27 15:12:27,321 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:12:27,336 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-27 15:12:27,336 build_log.py:267 INFO ... (took 1 secs) -== 2023-01-27 15:12:27,342 build_log.py:267 INFO taking care of extensions... -== 2023-01-27 15:12:27,348 easyblock.py:3877 INFO Starting extensions step -== 2023-01-27 15:12:27,349 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:27,349 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:27,350 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:27,350 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:27,350 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-27 15:12:27,351 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-27 15:12:27,351 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-27 15:12:29,068 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-27 15:12:29,070 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:12:29,071 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/scib-pipeline]==]) -whatis([==[URL: https://github.com/theislab/scib-pipeline]==]) -whatis([==[Extensions: anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a" - -conflict("scib-pipeline") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("PyTorch/1.12.0-foss-2022a") ) then - load("PyTorch/1.12.0-foss-2022a") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") ) then - load("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") -end - -if not ( isloaded("R/4.2.1-foss-2022a") ) then - load("R/4.2.1-foss-2022a") -end - -if not ( isloaded("scib/1.1.1-foss-2022a") ) then - load("scib/1.1.1-foss-2022a") -end - -if not ( isloaded("scikit-learn/1.1.2-foss-2022a") ) then - load("scikit-learn/1.1.2-foss-2022a") -end - -if not ( isloaded("scikit-misc/0.1.4-foss-2022a") ) then - load("scikit-misc/0.1.4-foss-2022a") -end - -if not ( isloaded("rpy2/3.5.7-foss-2022a") ) then - load("rpy2/3.5.7-foss-2022a") -end - -if not ( isloaded("snakemake/7.20.0-foss-2022a") ) then - load("snakemake/7.20.0-foss-2022a") -end - -if not ( isloaded("networkx/2.8.4-foss-2022a") ) then - load("networkx/2.8.4-foss-2022a") -end - -if not ( isloaded("ICU/71.1-GCCcore-11.3.0") ) then - load("ICU/71.1-GCCcore-11.3.0") -end - -if not ( isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTSCIBMINPIPELINE", "anndata-0.8.0,anndata2ri-1.1,get_version-3.5.4,trvaep-0.1.0,annoy-1.17.1,geosketch-1.2,fbpca-1.0,scgen-2.1.0,bbknn-1.5.1,scanorama-1.7.3,memory-profiler-0.61.0,scib-pipeline-0.2.0") - -== 2023-01-27 15:12:29,073 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/vis/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:12:29,073 easyblock.py:3724 INFO Skipping devel module... -== 2023-01-27 15:12:29,073 filetools.py:339 INFO Symlinked 0.2.0-foss-2022a.lua to /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline/default -== 2023-01-27 15:12:29,074 module_generator.py:1489 INFO Module default version file written to point to /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline/default -== 2023-01-27 15:12:36,119 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/438/vsc43810/.local/bin:1;/user/gent/438/vsc43810/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/438/vsc43810/.dotnet/tools:1 (previous value: 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-== 2023-01-27 15:12:36,123 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-27 15:12:36,123 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-27 15:12:36,123 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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-== 2023-01-27 15:12:36,152 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-27 15:12:50,455 easyblock.py:2838 INFO Installing extensions -== 2023-01-27 15:12:50,496 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:50,498 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:50,499 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:50,499 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:50,499 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:50,509 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:50,510 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:50,510 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:50,511 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:50,511 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:50,512 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:50,512 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:50,513 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:50,514 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:50,514 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:50,514 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:50,514 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:50,514 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:50,515 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:50,521 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:50,521 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:50,521 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:57,247 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:57,247 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,251 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:57,252 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:57,252 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,254 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:57,255 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,255 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,257 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,257 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,257 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,259 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,260 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,263 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,263 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,263 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,264 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,266 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:57,266 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,270 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:57,270 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,270 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,272 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,273 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,273 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,275 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,275 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,276 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,278 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,278 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,280 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:57,280 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,282 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:57,283 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:57,283 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,285 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:57,286 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,286 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,288 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,288 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,288 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,290 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,291 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,293 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,293 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,295 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,296 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,296 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,298 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,299 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,299 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,301 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,301 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,301 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,304 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,304 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,306 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:57,306 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,309 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:57,309 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,309 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,311 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,312 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,312 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,314 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,314 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,314 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,316 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,317 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,319 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:57,319 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,322 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:57,322 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,323 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,324 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,325 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,325 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,327 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,328 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,328 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,330 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,332 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,332 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,333 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,333 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,334 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,336 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:57,336 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,339 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:57,339 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:57,339 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,341 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:57,342 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,342 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,344 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,344 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,345 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,347 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,347 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,349 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:57,349 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,352 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:57,352 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,352 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,354 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,355 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,355 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,357 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,357 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,357 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,359 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,362 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,362 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,362 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,365 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:57,365 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,368 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:57,368 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:57,368 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,370 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:57,371 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,371 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,373 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,374 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,374 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,376 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,376 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,379 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,379 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,380 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,382 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:57,382 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,385 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:57,385 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,385 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,387 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,388 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,388 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,390 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,391 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,391 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,393 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,394 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,395 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,395 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,396 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,398 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:57,398 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,400 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:57,401 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,401 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,403 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,403 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,404 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,406 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,406 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,406 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,408 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,409 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,411 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:57,411 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,413 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:57,413 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:57,414 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,416 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:57,416 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,416 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,418 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,419 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,419 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,421 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,421 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,426 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,426 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,427 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,427 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,429 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:57,430 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,432 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:57,433 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:57,433 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,435 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:57,435 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,435 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,437 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,438 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,438 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,440 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,441 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,444 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,444 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,445 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,445 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,447 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:57,448 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,450 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:57,450 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:57,451 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,460 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:57,460 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:57,461 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,463 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:57,463 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,463 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,465 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,466 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,470 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:57,472 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:57,472 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,474 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:57,475 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,475 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,477 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,478 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,478 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,480 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,480 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,481 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,483 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,483 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,485 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:57,485 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,488 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:57,489 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,489 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,491 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,492 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,492 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,494 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,494 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,495 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,497 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,497 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,499 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:57,500 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,502 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:57,502 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,503 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,505 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,505 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,505 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,507 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,508 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,508 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,510 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,511 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,528 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,529 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,529 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,530 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,532 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:57,532 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,534 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:57,535 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,535 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,537 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,538 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,538 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,539 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,540 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,540 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,541 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,541 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,543 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:57,543 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,545 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:57,545 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,545 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,546 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,546 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,547 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,547 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,548 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,548 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,549 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,549 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,551 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:57,551 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,553 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:57,553 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,554 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,554 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,555 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,555 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,556 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,556 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,556 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,557 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,557 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,559 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:57,560 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,561 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:57,561 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:57,562 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,562 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:57,563 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:57,563 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,564 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:57,564 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,564 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,565 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,565 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,566 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,567 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,567 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,568 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,568 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,570 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:57,571 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,571 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:57,572 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,572 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,573 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,573 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,573 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,574 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,574 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,575 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,575 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,575 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,578 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:57,578 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,579 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:57,579 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,579 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,580 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,580 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,581 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,581 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,582 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,582 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,582 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,583 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,585 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:57,585 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,587 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:57,587 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:57,587 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,588 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:57,588 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,589 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,589 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,590 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,590 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,591 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,592 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,593 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,593 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,594 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,594 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,596 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:57,596 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,597 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:57,598 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,598 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,599 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,599 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,599 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,600 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,600 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,601 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,601 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,601 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,604 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:57,604 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,605 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:57,605 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,605 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,606 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,606 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,607 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,607 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,608 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,608 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,608 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,609 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,610 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,611 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,611 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,612 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,614 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:57,614 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,616 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:57,616 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,617 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,617 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,618 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,618 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,619 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,619 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,619 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,620 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,620 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,626 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,627 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,627 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,628 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,628 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,634 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata' -== 2023-01-27 15:12:57,635 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:57,635 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previously undefined) -== 2023-01-27 15:12:57,635 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:57,635 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:57,722 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:57,725 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:57,725 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:57,725 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:57,725 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:57,731 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:57,732 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:57,732 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:57,734 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:57,735 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:57,736 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:57,737 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:57,738 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:57,738 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:57,739 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:57,739 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:57,739 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:57,739 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:57,740 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:57,740 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:57,740 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:57,740 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:57,740 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:57,741 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:57,742 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:57,748 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:57,748 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:57,748 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:57,752 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:57,752 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,753 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:57,753 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:57,753 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,754 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:57,754 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,755 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,755 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,756 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,756 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,756 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,757 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,757 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,758 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,761 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:57,761 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,761 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:57,762 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,762 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,763 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,763 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,763 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,764 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,764 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,765 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,765 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,765 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,767 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:57,768 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,768 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:57,769 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:57,769 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,770 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:57,770 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,770 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,771 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,771 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,771 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,772 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,772 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,774 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,775 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,775 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,776 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,776 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,776 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,777 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,777 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,778 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,778 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,778 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,779 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,779 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,781 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:57,782 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,782 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:57,783 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,783 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,783 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,784 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,784 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,785 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,785 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,785 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,786 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,786 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,788 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:57,789 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,789 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:57,790 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,790 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,790 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,791 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,791 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,792 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,792 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,792 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,793 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,795 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,795 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,797 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:57,797 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,798 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:57,798 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:57,799 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,799 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:57,800 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,800 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,801 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,801 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,801 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,802 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,802 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,804 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:57,804 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,805 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:57,806 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,806 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,807 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,807 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,807 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,808 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,808 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,808 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,809 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,809 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,811 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,811 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,813 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:57,814 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,814 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:57,815 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:57,815 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,815 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:57,816 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,816 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,817 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,817 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,817 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,818 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,818 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,819 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,819 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,819 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,820 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,820 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,822 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:57,822 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,823 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:57,823 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,824 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,824 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,825 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,825 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,826 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,826 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,826 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,827 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,827 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,828 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,828 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,829 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,831 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:57,831 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,832 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:57,832 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,833 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,833 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,834 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,834 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,834 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,835 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,835 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,836 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,836 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,838 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:57,838 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,839 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:57,839 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:57,840 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,840 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:57,841 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,841 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,841 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,842 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,842 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,843 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,843 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,843 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,844 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,846 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:57,847 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,847 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:57,848 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:57,848 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,849 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:57,849 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,849 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,850 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,850 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,850 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,851 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,851 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,852 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,853 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,855 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:57,855 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,856 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:57,856 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:57,857 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,857 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:57,857 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:57,858 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,858 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:57,859 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,859 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,860 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,860 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,860 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,861 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:57,863 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:57,863 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,864 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:57,864 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,865 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,865 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,866 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,866 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,866 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,867 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,867 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,868 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,868 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,870 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:57,870 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,871 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:57,871 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,872 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,872 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,873 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,873 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,873 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,874 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,874 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,875 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,875 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,877 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:57,877 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,878 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:57,878 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,878 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,879 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,879 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,880 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,880 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,881 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,881 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,882 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,882 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,882 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,883 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,883 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,883 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,884 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,886 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:57,886 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,887 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:57,887 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,887 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,888 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,888 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,889 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,889 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,890 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,890 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,890 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,891 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,893 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:57,893 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,894 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:57,894 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,894 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,895 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,895 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,896 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,896 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,897 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,897 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,897 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,898 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,900 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:57,900 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,901 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:57,901 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,901 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,902 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,902 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,902 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,903 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,903 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,904 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,904 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,904 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,906 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:57,907 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,907 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:57,908 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:57,908 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,909 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:57,909 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:57,909 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,910 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:57,910 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,910 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,911 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,911 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,912 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,913 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,913 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,913 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,916 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:57,916 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,916 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:57,917 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,917 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,918 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,918 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,918 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,919 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,919 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,919 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,920 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,920 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,922 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:57,923 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,923 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:57,924 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:57,924 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,925 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:57,925 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,925 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,926 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,926 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,926 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,927 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,927 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,929 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:57,930 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,930 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:57,930 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:57,931 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,931 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:57,931 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,931 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,932 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,932 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,932 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,932 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,932 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,934 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,935 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:57,935 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,935 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:57,935 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,936 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,936 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,936 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,936 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,937 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,937 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,937 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,937 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,937 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,939 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:57,939 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,939 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:57,939 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,939 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,940 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,940 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,940 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,940 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,941 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,941 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,941 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,941 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,942 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,942 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,944 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:57,944 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,944 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:57,944 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,944 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,945 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,945 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,945 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,945 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,946 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,946 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,946 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,946 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,946 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,947 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,947 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,947 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,947 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,950 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata2ri' -== 2023-01-27 15:12:57,950 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:57,950 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:57,950 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:57,950 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:57,952 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:57,953 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:57,954 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:57,954 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:57,954 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:57,955 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:57,956 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:57,956 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:57,957 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:57,957 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:57,958 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:57,958 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:57,959 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:57,959 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:57,959 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:57,959 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:57,959 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:57,960 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:57,961 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:57,962 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:57,963 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:57,963 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:57,964 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:57,964 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,965 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:57,965 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:57,965 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,965 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:57,966 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:57,966 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,966 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:57,966 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,966 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,967 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,967 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,967 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,975 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,975 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,975 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:57,976 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:57,977 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,977 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:57,977 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:57,977 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,978 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:57,978 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,978 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,978 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,978 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,979 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,979 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,979 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,980 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:57,980 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,981 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:57,981 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:57,981 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,981 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:57,981 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,982 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,982 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,982 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,982 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,982 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,983 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,984 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,984 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,984 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,984 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:57,984 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,985 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:57,985 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,985 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,985 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,986 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:57,986 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,986 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:57,986 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,987 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:57,987 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,988 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:57,988 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,988 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,988 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,989 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,989 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,989 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,989 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,989 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,990 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,990 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,991 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:57,991 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,991 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:57,991 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:57,992 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,992 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:57,992 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,992 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,992 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,993 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,993 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,993 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,993 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,993 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,994 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,994 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,994 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:57,994 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,995 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:57,995 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,996 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:57,996 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:57,996 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,996 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:57,997 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:57,997 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,997 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:57,997 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:57,997 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,998 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:57,998 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:57,999 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:57,999 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:57,999 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:57,999 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,000 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,000 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,000 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,000 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,000 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,001 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,001 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,001 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,001 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,001 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,002 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,002 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,002 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,002 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,003 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,003 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,004 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,004 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,004 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,004 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,004 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,005 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,005 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,005 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,005 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,005 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,007 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,008 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,008 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,008 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,008 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,008 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,009 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,009 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,009 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,009 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,010 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,010 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,010 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,011 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,012 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,012 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,012 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,013 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,013 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,013 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,013 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,013 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,014 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,014 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,014 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,014 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,014 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,015 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,016 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,016 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,016 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,016 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,016 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,017 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,017 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,017 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,017 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,017 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,018 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,018 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,018 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,018 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,018 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,019 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,020 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,020 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,020 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,020 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,020 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,021 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,021 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,021 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,021 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,021 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,021 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,022 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,023 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,023 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,024 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,024 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,024 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,024 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,024 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,025 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,025 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,025 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,025 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,026 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,026 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,026 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,027 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,028 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,028 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,028 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,028 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,028 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,029 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,029 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,029 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,029 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,029 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,030 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,030 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,030 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,031 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,031 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,031 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,032 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,032 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,032 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,032 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,032 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,033 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,033 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,033 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,033 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,033 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,035 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,035 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,035 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,035 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,035 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,036 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,036 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,036 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,036 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,036 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,036 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,037 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,038 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,038 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,039 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,039 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,039 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,039 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,040 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,040 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,040 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,040 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,040 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,041 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,041 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,041 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,041 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,042 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,042 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,043 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,043 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,043 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,043 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,043 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,043 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,044 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,044 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,044 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,044 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,044 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,045 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,046 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,046 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,046 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,046 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,047 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,047 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,047 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,047 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,047 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,047 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,048 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,048 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,049 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,049 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,049 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,049 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,049 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,050 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,050 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,050 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,050 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,051 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,051 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,051 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,052 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,052 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,052 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,053 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,053 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,053 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,054 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,054 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,054 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,054 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,054 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,055 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,055 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,055 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,055 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,056 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,057 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,057 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,057 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,057 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,057 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,058 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,058 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,058 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,058 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,058 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,059 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,059 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,059 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,060 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,060 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,060 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,061 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,061 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,061 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,061 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,061 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,062 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,062 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,062 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,062 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,062 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,063 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,063 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,063 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,063 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,063 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,064 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,064 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,065 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,065 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,065 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,065 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,066 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,066 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,066 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,066 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,066 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,067 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,067 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,068 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,068 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,068 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,068 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,069 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,069 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,069 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,069 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,069 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,070 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,070 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,070 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,070 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,070 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,071 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,071 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,071 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,071 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,072 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,072 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,073 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,073 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,073 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,073 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,073 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,073 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,074 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,074 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,074 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,074 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,074 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,075 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,075 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,075 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,075 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,075 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,078 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'get_version' -== 2023-01-27 15:12:58,078 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,078 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,078 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,079 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,080 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,081 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,081 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,082 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,082 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,083 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,084 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,084 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,085 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,085 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,085 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,086 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,086 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,087 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,088 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,088 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,088 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,088 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,090 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,090 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,090 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,092 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,092 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,092 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,092 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,093 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,093 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,093 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,093 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,093 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,094 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,094 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,094 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,095 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,095 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,095 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,096 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,096 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,097 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,097 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,097 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,097 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,097 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,097 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,098 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,098 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,098 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,098 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,099 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,100 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,100 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,100 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,100 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,100 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,101 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,101 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,101 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,101 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,101 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,102 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,102 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,102 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,103 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,103 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,103 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,104 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,104 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,104 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,104 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,104 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,105 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,105 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,105 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,105 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,105 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,106 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,107 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,107 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,107 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,107 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,107 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,108 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,108 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,108 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,108 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,108 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,109 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,109 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,110 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,110 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,110 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,111 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,111 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,111 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,111 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,111 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,112 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,112 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,112 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,112 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,113 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,113 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,113 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,113 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,114 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,114 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,115 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,115 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,115 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,115 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,116 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,116 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,116 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,116 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,116 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,117 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,117 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,118 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,118 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,118 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,118 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,119 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,119 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,119 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,119 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,119 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,120 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,120 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,120 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,120 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,120 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,121 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,122 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,122 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,123 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,123 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,123 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,123 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,123 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,124 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,124 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,124 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,124 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,124 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,126 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,127 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,127 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,127 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,127 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,127 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,128 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,128 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,128 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,128 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,128 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,129 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,129 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,129 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,130 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,130 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,130 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,131 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,131 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,131 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,132 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,132 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,132 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,132 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,132 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,133 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,133 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,133 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,133 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,133 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,134 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,135 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,135 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,135 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,135 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,135 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,136 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,136 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,136 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,136 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,136 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,137 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,138 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,139 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,139 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,139 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,139 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,139 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,140 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,140 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,140 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,140 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,141 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,141 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,141 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,141 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,141 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,142 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,142 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,142 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,143 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,143 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,143 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,144 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,144 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,144 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,144 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,144 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,145 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,145 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,145 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,145 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,145 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,146 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,146 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,146 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,147 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,147 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,147 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,148 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,148 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,148 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,148 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,148 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,149 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,149 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,149 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,149 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,149 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,150 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,151 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,151 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,151 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,151 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,151 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,152 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,152 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,152 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,152 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,152 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,153 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,153 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,154 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,154 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,154 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,155 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,155 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,155 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,155 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,155 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,156 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,156 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,156 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,156 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,156 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,157 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,157 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,157 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,157 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,157 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,158 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,158 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,159 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,159 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,159 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,159 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,160 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,160 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,160 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,160 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,160 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,161 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,161 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,162 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,162 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,162 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,162 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,163 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,163 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,163 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,163 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,163 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,164 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,164 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,164 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,164 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,165 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,165 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,166 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,166 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,166 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,166 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,167 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,167 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,167 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,167 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,167 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,168 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,168 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,169 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,169 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,169 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,169 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,169 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,170 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,170 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,170 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,170 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,171 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,171 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,171 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,171 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,171 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,172 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,173 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,173 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,174 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,174 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,174 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,174 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,174 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,175 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,175 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,175 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,175 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,175 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,176 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,177 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,177 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,177 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,177 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,177 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,178 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,178 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,178 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,178 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,178 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,179 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,179 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,179 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,180 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,180 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,181 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,181 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,181 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,181 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,182 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,182 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,182 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,182 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,182 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,182 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,183 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,183 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,183 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,183 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,183 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,184 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,185 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,185 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,185 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,185 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,185 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,186 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,186 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,186 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,186 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,186 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,186 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,187 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,187 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,188 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,188 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,188 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,189 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,189 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,189 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,189 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,189 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,190 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,190 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,190 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,190 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,190 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,190 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,191 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,191 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,191 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,191 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,192 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,192 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,193 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,193 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,193 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,193 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,193 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,194 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,194 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,194 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,194 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,194 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,195 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,198 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-27 15:12:58,198 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,198 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,198 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,198 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,200 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,201 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,201 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,201 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,201 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,203 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,203 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,203 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,204 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,204 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,205 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,205 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,206 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,206 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,206 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,206 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,206 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,207 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,208 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,209 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,209 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,209 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,212 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,212 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,212 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,212 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,212 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,213 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,213 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,213 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,213 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,214 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,214 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,214 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,214 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,214 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,214 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,215 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,215 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,216 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,216 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,216 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,216 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,217 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,217 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,217 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,217 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,217 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,218 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,218 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,218 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,218 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,219 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,219 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,220 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,220 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,220 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,220 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,220 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,220 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,221 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,221 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,221 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,221 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,221 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,222 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,223 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,223 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,223 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,223 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,223 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,224 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,224 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,224 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,224 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,224 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,225 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,225 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,226 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,232 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,233 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,233 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,233 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,234 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,234 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,234 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,234 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,234 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,235 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,235 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,235 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,236 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,236 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,236 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,237 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,237 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,237 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,237 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,237 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,238 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,238 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,238 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,238 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,238 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,238 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,239 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,239 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,239 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,239 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,240 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,240 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,241 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,241 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,241 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,241 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,241 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,242 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,242 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,242 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,242 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,242 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,242 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,243 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,244 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,244 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,244 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,244 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,244 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,245 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,245 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,245 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,245 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,245 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,246 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,246 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,246 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,246 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,246 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,246 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,247 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,248 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,248 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,248 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,248 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,248 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,249 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,249 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,249 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,249 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,249 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,249 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,250 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,250 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,250 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,250 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,250 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,251 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,251 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,252 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,252 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,252 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,252 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,253 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,253 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,253 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,253 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,253 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,254 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,254 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,254 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,254 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,254 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,254 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,255 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,255 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,255 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,256 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,256 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,256 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,257 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,257 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,257 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,257 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,257 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,257 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,258 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,258 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,258 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,258 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,259 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,259 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,259 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,260 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,260 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,260 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,260 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,260 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,261 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,261 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,261 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,261 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,261 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,262 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,262 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,262 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,262 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,263 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,263 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,263 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,264 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,264 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,264 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,264 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,264 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,265 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,265 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,265 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,265 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,265 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,266 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,266 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,266 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,266 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,267 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,267 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,267 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,268 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,268 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,268 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,268 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,268 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,269 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,269 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,269 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,269 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,269 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,269 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,270 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,270 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,271 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,271 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,271 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,271 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,271 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,272 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,272 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,272 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,272 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,272 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,273 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,273 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,273 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,274 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,274 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,274 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,275 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,275 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,275 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,275 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,275 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,276 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,276 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,276 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,276 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,276 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,277 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,277 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,278 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,278 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,278 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,278 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,278 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,278 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,279 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,279 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,279 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,279 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,279 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,280 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,280 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,280 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,280 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,280 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,281 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,281 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,282 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,282 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,282 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,282 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,282 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,283 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,283 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,283 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,283 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,283 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,283 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,284 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,285 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,285 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,285 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,285 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,285 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,286 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,286 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,286 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,286 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,286 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,287 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,287 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,288 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,288 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,288 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,288 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,288 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,289 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,289 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,289 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,289 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,289 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,289 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,290 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,290 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,291 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,291 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,291 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,291 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,291 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,292 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,292 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,292 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,292 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,292 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,293 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,293 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,294 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,294 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,294 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,295 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,295 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,295 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,296 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,296 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,296 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,296 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,296 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,296 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,297 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,297 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,297 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,297 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,298 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,298 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,299 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,299 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,299 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,299 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,299 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,299 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,300 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,300 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,300 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,300 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,300 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,301 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,301 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,302 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,302 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,302 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,302 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,303 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,303 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,303 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,303 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,303 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,303 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,304 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,304 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,306 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,306 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,306 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,306 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,306 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,307 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,307 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,307 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,307 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,307 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,308 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,308 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,308 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,309 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,309 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,309 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,310 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,310 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,310 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,310 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,310 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,311 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,311 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,311 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,311 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,311 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,312 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,312 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,312 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,312 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,312 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,313 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,313 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,314 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,314 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,314 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,314 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,314 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,315 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,315 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,315 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,315 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,315 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,316 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,316 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,319 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'annoy' -== 2023-01-27 15:12:58,319 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,319 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,319 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,319 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,321 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,322 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,322 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,323 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,323 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,324 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,324 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,325 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,326 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,326 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,326 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,327 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,327 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,327 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,328 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,329 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,329 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,331 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,331 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,331 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,332 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,333 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,333 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,333 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,333 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,333 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,334 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,334 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,334 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,334 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,334 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,335 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,335 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,335 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,335 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,335 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,336 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,337 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,337 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,337 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,337 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,337 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,338 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,338 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,338 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,338 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,338 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,339 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,339 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,339 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,340 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,340 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,340 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,341 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,341 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,341 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,341 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,341 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,342 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,342 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,342 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,342 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,342 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,343 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,343 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,344 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,344 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,344 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,344 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,344 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,345 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,345 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,345 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,345 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,345 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,346 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,347 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,347 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,347 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,347 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,347 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,348 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,348 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,348 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,348 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,348 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,349 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,349 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,349 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,350 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,350 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,350 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,351 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,351 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,351 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,351 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,351 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,352 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,352 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,352 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,352 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,352 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,353 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,354 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,354 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,355 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,355 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,355 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,355 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,356 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,356 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,356 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,356 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,356 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,357 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,357 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,358 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,358 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,358 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,358 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,358 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,359 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,359 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,359 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,359 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,360 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,360 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,360 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,360 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,361 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,362 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,362 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,362 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,363 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,363 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,363 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,363 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,363 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,364 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,364 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,364 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,364 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,364 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,365 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,365 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,365 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,365 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,365 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,366 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,366 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,367 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,367 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,367 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,367 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,368 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,368 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,368 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,368 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,368 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,369 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,369 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,370 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,371 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,371 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,371 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,371 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,371 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,372 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,372 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,372 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,372 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,373 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,373 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,373 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,373 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,374 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,374 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,374 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,375 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,375 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,375 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,375 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,375 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,376 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,376 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,376 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,376 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,376 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,377 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,377 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,377 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,377 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,378 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,378 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,379 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,379 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,379 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,379 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,379 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,380 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,380 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,380 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,380 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,381 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,381 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,381 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,382 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,383 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,383 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,383 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,383 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,384 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,384 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,384 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,384 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,384 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,384 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,385 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,385 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,385 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,386 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,387 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,387 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,387 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,387 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,388 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,388 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,388 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,388 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,388 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,388 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,389 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,389 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,390 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,390 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,390 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,391 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,391 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,391 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,391 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,391 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,392 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,392 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,392 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,392 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,392 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,393 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,394 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,394 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,394 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,394 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,394 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,395 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,395 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,395 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,395 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,395 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,396 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,396 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,396 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,396 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,396 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,397 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,397 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,398 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,398 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,398 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,399 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,399 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,399 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,399 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,399 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,400 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,400 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,400 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,400 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,400 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,401 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,401 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,402 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,402 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,402 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,402 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,403 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,403 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,403 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,403 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,403 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,404 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,404 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,405 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,405 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,405 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,405 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,406 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,406 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,406 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,406 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,406 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,407 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,407 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,407 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,407 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,408 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,408 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,409 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,409 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,409 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,409 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,409 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,410 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,410 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,410 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,410 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,410 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,412 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,413 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,413 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,413 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,413 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,413 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,414 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,414 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,414 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,414 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,415 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,415 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,415 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,415 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,416 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,416 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,417 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,417 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,417 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,417 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,417 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,418 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,418 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,418 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,418 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,418 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,419 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,420 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,420 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,420 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,420 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,420 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,421 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,421 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,421 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,421 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,421 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,422 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,422 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,422 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,422 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,422 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,423 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,423 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,423 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,424 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,424 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,424 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,425 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,425 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,425 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,425 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,425 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,426 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,426 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,426 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,426 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,426 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,427 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,428 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,428 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,428 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,428 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,429 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,429 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,429 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,429 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,429 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,429 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,430 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,430 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,430 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,431 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,431 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,431 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,431 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,432 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,432 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,432 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,433 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,433 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,433 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,433 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,433 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,434 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,434 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,434 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,434 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,434 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,435 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,438 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'geosketch' -== 2023-01-27 15:12:58,438 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,438 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,438 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,438 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,440 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,441 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,441 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,441 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,441 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,443 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,443 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,443 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,444 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,444 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,445 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,446 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,446 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,446 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,446 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,446 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,447 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,448 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,449 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,449 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,450 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,451 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,451 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,451 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,452 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,452 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,452 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,452 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,452 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,453 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,453 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,453 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,453 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,454 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,454 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,454 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,454 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,455 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,455 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,456 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,456 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,456 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,456 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,456 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,456 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,457 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,457 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,457 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,457 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,457 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,458 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,459 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,459 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,459 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,459 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,459 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,460 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,460 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,460 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,460 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,460 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,461 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,461 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,462 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,462 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,462 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,462 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,462 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,463 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,463 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,463 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,463 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,463 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,464 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,464 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,464 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,465 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,465 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,465 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,466 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,466 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,466 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,466 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,466 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,467 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,467 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,467 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,467 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,467 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,468 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,468 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,469 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,469 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,469 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,469 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,469 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,470 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,470 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,470 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,470 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,470 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,471 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,471 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,471 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,471 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,471 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,471 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,472 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,473 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,473 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,473 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,473 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,473 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,474 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,474 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,474 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,474 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,474 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,475 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,475 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,476 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,476 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,476 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,476 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,476 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,477 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,477 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,477 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,477 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,477 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,478 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,478 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,478 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,479 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,479 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,480 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,480 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,480 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,480 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,481 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,481 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,481 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,481 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,481 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,482 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,482 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,482 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,482 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,482 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,482 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,483 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,488 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,491 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,491 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,491 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,492 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,492 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,492 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,492 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,492 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,493 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,493 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,493 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,493 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,493 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,493 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,494 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,494 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,494 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,494 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,495 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,495 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,496 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,496 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,496 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,496 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,496 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,496 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,497 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,497 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,497 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,497 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,497 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,498 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,499 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,499 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,499 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,499 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,499 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,500 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,500 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,500 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,500 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,500 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,501 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,501 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,501 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,502 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,502 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,503 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,503 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,503 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,503 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,504 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,504 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,504 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,504 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,504 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,504 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,505 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,505 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,505 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,505 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,505 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,506 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,506 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,507 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,507 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,507 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,507 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,507 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,508 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,508 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,508 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,508 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,508 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,509 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,509 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,509 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,509 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,510 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,510 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,511 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,511 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,511 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,511 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,511 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,511 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,512 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,512 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,512 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,512 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,512 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,513 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,514 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,514 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,514 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,514 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,514 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,515 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,515 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,515 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,515 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,515 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,516 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,516 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,517 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,517 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,517 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,517 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,517 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,518 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,518 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,518 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,518 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,518 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,518 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,519 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,519 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,520 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,520 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,521 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,521 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,521 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,521 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,521 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,522 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,522 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,522 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,522 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,523 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,523 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,523 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,523 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,524 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,524 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,524 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,525 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,525 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,525 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,525 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,525 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,526 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,526 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,526 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,526 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,526 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,527 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,527 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,528 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,528 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,528 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,528 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,528 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,528 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,529 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,529 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,529 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,529 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,529 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,530 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,530 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,531 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,531 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,531 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,531 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,531 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,532 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,532 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,532 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,532 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,532 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,533 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,533 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,533 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,533 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,533 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,533 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,534 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,535 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,535 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,535 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,535 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,535 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,536 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,536 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,536 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,536 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,536 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,537 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,537 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,538 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,538 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,538 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,538 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,538 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,539 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,539 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,539 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,539 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,539 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,540 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,540 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,540 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,541 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,541 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,541 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,541 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,542 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,542 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,542 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,542 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,542 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,543 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,543 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,543 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,543 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,543 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,543 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,544 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,544 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,544 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,545 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,545 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,545 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,546 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,546 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,546 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,546 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,546 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,546 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,547 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,547 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,547 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,547 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,548 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,548 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,549 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,549 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,549 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,549 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,549 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,549 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,550 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,550 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,550 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,550 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,550 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,551 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,551 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,552 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,552 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,553 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,553 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,553 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,553 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,553 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,553 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,554 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,554 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,554 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,554 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,554 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,556 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,558 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'fbpca' -== 2023-01-27 15:12:58,558 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,558 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,559 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,559 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,560 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,561 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,561 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,562 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,562 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,563 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,564 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,564 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,565 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,565 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,565 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,566 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,566 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,566 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,567 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,568 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,568 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,570 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,570 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,570 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,571 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,572 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,572 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,572 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,572 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,572 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,573 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,573 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,573 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,573 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,573 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,574 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,574 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,574 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,574 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,574 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,575 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,576 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,576 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,576 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,576 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,576 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,577 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,577 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,577 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,577 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,577 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,577 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,578 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,578 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,579 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,579 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,579 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,579 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,580 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,580 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,580 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,580 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,580 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,581 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,581 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,581 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,581 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,582 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,582 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,583 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,583 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,583 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,583 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,583 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,583 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,584 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,584 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,584 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,584 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,584 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,585 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,586 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,586 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,586 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,586 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,586 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,587 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,587 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,587 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,587 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,587 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,588 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,588 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,589 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,589 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,589 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,589 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,589 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,590 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,590 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,590 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,590 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,591 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,591 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,591 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,592 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,592 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,592 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,593 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,593 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,593 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,594 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,594 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,594 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,594 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,594 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,595 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,595 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,595 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,595 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,595 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,596 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,596 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,597 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,597 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,597 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,597 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,598 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,598 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,598 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,598 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,598 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,599 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,600 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,600 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,601 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,601 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,601 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,601 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,602 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,602 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,602 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,602 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,602 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,603 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,603 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,603 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,603 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,603 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,604 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,604 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,605 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,605 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,606 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,606 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,606 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,606 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,606 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,607 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,607 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,607 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,607 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,607 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,608 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,608 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,609 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,610 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,610 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,610 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,610 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,611 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,611 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,611 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,611 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,611 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,611 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,612 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,612 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,613 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,613 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,613 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,613 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,614 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,614 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,614 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,614 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,614 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,615 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,615 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,615 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,616 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,616 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,617 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,617 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,617 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,618 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,618 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,618 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,618 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,618 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,619 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,619 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,619 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,619 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,619 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,620 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,620 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,620 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,620 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,621 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,621 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,621 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,622 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,622 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,622 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,622 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,622 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,623 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,623 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,623 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,623 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,623 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,624 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,624 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,624 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,625 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,625 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,625 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,626 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,626 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,626 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,626 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,626 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,627 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,627 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,627 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,627 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,627 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,628 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,629 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,629 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,629 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,629 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,629 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,630 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,630 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,630 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,630 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,630 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,631 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,631 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,632 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,632 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,632 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,632 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,633 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,633 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,633 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,633 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,633 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,634 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,634 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,634 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,635 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,635 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,635 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,635 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,636 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,636 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,637 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,637 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,637 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,637 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,637 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,638 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,638 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,638 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,638 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,638 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,639 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,640 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,640 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,640 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,640 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,640 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,641 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,641 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,641 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,641 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,641 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,642 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,642 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,642 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,643 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,643 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,643 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,644 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,644 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,644 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,644 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,644 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,645 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,645 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,645 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,645 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,645 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,646 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,646 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,647 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,647 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,647 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,647 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,648 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,648 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,648 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,648 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,648 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,649 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,649 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,650 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,650 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,651 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,651 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,651 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,651 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,652 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,652 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,652 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,652 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,653 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,653 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,653 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,653 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,653 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,654 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,654 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,655 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,655 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,655 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,655 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,656 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,656 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,656 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,656 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,656 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,657 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,657 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,658 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,658 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,658 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,658 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,659 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,659 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,659 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,659 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,659 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,660 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,660 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,660 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,660 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,660 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,661 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,661 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,661 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,661 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,662 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,662 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,663 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,663 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,663 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,663 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,663 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,664 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,664 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,664 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,664 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,664 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,665 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,666 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,666 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,666 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,666 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,666 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,667 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,667 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,667 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,667 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,668 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,668 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,668 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,668 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,668 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,668 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,669 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,669 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,669 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,670 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,670 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,670 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,671 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,671 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,671 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,671 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,671 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,672 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,672 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,672 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,672 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,672 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,673 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,676 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scgen' -== 2023-01-27 15:12:58,676 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,676 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,676 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,676 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,678 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,679 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,679 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,680 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,680 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,681 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,682 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,682 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,683 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,683 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,683 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,684 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,684 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,685 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,686 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,686 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,686 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,688 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,688 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,688 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,689 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,690 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,690 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,690 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,690 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,690 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,691 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,691 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,691 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,691 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,691 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,692 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,693 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,694 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,694 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,694 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,694 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,694 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,695 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,695 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,695 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,695 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,695 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,695 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,696 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,696 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,697 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,697 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,697 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,697 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,698 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,698 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,698 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,698 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,698 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,699 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,699 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,699 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,699 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,700 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,700 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,701 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,701 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,701 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,701 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,701 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,702 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,702 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,702 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,702 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,702 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,703 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,704 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,704 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,704 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,704 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,704 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,705 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,705 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,705 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,705 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,705 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,706 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,706 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,707 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,707 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,707 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,707 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,707 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,708 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,708 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,708 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,708 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,709 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,709 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,709 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,709 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,709 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,709 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,710 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,710 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,710 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,711 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,711 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,711 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,712 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,712 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,712 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,712 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,712 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,713 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,713 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,713 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,713 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,713 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,714 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,714 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,715 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,715 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,715 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,715 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,715 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,716 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,716 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,716 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,716 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,716 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,716 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,717 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,717 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,717 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,717 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,717 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,718 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,719 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,719 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,719 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,719 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,719 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,720 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,720 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,720 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,720 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,720 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,721 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,721 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,721 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,721 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,721 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,721 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,722 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,723 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,723 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,723 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,723 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,723 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,724 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,724 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,724 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,724 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,724 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,724 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,725 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,725 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,725 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,725 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,725 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,726 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,726 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,727 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,727 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,727 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,727 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,727 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,728 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,728 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,728 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,728 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,728 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,729 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,729 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,729 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,730 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,730 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,730 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,730 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,731 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,731 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,731 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,731 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,731 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,732 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,732 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,732 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,732 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,732 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,733 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,733 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,734 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,734 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,734 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,734 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,735 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,735 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,735 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,735 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,735 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,736 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,736 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,736 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,736 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,736 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,736 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,737 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,737 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,738 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,738 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,738 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,738 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,738 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,739 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,739 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,739 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,739 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,740 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,740 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,740 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,740 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,747 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,747 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,748 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,749 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,749 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,749 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,749 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,749 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,750 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,750 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,750 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,750 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,750 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,750 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,751 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,751 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,752 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,752 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,752 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,752 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,753 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,753 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,753 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,753 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,753 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,754 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,754 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,754 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,754 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,755 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,755 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,756 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,756 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,756 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,756 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,756 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,756 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,757 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,757 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,757 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,757 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,757 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,758 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,758 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,759 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,759 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,760 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,760 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,760 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,760 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,760 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,760 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,761 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,761 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,761 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,761 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,761 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,762 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,763 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,763 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,763 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,763 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,763 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,764 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,764 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,764 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,764 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,764 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,765 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,765 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,766 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,766 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,766 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,766 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,766 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,767 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,767 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,767 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,767 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,767 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,768 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,768 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,768 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,769 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,769 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,769 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,769 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,770 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,770 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,770 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,770 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,770 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,771 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,771 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,771 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,772 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,773 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,773 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,773 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,774 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,774 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,774 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,774 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,774 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,775 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,775 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,775 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,775 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,775 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,776 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,776 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,777 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,777 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,777 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,777 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,777 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,777 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,778 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,778 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,778 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,778 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,778 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,779 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,780 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,780 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,780 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,780 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,780 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,781 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,781 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,781 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,781 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,781 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,781 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,782 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,782 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,783 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,784 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,784 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,784 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,784 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,784 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,785 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,785 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,785 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,785 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,785 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,786 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,786 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,787 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,787 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,787 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,787 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,787 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,788 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,788 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,788 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,788 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,788 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,788 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,789 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,789 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,789 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,789 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,789 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,790 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,790 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,791 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,791 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,791 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,791 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,791 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,792 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,792 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,792 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,792 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,792 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,793 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,793 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,794 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,796 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'bbknn' -== 2023-01-27 15:12:58,796 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,796 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,797 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,797 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,798 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,799 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,799 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,800 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,800 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,801 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,801 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,802 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,803 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,803 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,803 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,804 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,804 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,804 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,804 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,804 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,805 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,806 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,806 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,808 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,808 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,808 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,809 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,810 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,810 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,810 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,810 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,810 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,811 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,811 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,811 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,811 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,811 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,812 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,813 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,814 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,814 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,814 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,814 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,814 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,815 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,815 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,815 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,815 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,815 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,816 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,816 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,816 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,817 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,817 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,817 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,818 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,818 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,818 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,818 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,818 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,819 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,819 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,819 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,819 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,819 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,820 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,820 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,821 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,821 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,821 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,821 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,822 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,822 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,822 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,822 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,822 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,822 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,823 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,824 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,824 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,824 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,824 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,824 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,825 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,825 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,825 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,825 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,825 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,825 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,826 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,826 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,827 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,827 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,827 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,828 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,828 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,828 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,828 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,828 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,829 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,829 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,829 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,829 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,830 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,830 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,830 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,830 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,831 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,831 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,832 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,832 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,832 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,832 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,832 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,832 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,833 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,833 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,833 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,833 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,833 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,835 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,835 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,835 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,835 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,835 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,836 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,836 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,836 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,836 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,836 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,836 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,837 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,838 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,838 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,839 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,839 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,839 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,839 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,840 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,840 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,840 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,840 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,840 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,841 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,841 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,841 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,842 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,842 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,842 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,843 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,843 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,843 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,844 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,844 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,844 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,844 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,844 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,845 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,845 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,845 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,845 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,845 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,846 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,846 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,846 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,846 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,846 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,847 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,847 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,848 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,848 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,848 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,848 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,849 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,849 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,849 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,849 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,849 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,850 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,850 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,851 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,851 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,851 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,851 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,851 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,852 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,852 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,852 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,852 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,852 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,853 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,853 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,853 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,854 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,854 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,855 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,855 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,855 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,855 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,855 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,856 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,856 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,856 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,856 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,857 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,857 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,857 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,857 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,857 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,858 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,858 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,858 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,859 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,859 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,859 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,860 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,860 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,860 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,860 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,860 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,861 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,861 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,861 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,861 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,861 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,862 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,862 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,863 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,863 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,863 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,864 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,864 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,864 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,864 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,864 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,865 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,865 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,865 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,865 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,865 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,866 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,866 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,867 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,867 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,867 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,867 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,868 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,868 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,868 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,868 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,868 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,869 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,869 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,870 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,870 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,870 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,870 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,871 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,871 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,871 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,871 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,871 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,872 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,872 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,872 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,872 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,872 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,873 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,873 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,874 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,874 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,875 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,875 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,875 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,875 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,875 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,875 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,876 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,876 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,876 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,876 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,876 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,877 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,878 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,878 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,878 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,878 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,879 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,879 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,879 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,879 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,879 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,879 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,880 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,880 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,881 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:58,881 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,881 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:58,882 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,882 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,882 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,882 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,882 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,883 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,883 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,883 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,883 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,883 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,884 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:58,884 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,885 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:58,885 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:58,885 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,885 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:58,886 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,886 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,886 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,886 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,886 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,887 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,887 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,887 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,887 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,887 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,888 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,888 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,889 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,889 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,889 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,889 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,889 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,890 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,890 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,890 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,890 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,891 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,891 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,891 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,891 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,892 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:58,892 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,893 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:58,893 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:58,893 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,893 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:58,893 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,894 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,894 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,894 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,894 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,894 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,895 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,896 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:58,896 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,896 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:58,896 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:58,896 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,897 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:58,897 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,897 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,897 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,897 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,898 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,898 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,898 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,898 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,898 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,899 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,899 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,899 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,900 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:58,900 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,900 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:58,901 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,901 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,901 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,901 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,901 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,902 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,902 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,902 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,902 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,902 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,903 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:58,904 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,904 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:58,904 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,904 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,905 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,905 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,905 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,905 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,905 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,905 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,906 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,906 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,907 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,907 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,908 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:58,908 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,908 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:58,909 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,909 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,909 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,909 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,909 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,910 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,910 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,910 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,910 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,910 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,911 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,911 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,911 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,911 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,911 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,914 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scanorama' -== 2023-01-27 15:12:58,914 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:58,914 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:58,914 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:58,914 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:58,916 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:58,917 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:58,917 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:58,917 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:58,918 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:58,919 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:58,919 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:58,920 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:58,921 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:58,921 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:58,921 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:58,922 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:58,922 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:58,922 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:58,923 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:58,924 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:58,924 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:58,924 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:58,925 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:58,926 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:58,926 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:58,926 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:58,928 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:58,928 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,928 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:58,928 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:58,929 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,929 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:58,929 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,929 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,929 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,930 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,930 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,930 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,930 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,931 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,931 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,931 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,931 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,932 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:58,932 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,933 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:58,933 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,933 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,933 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,933 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,934 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,934 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,934 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,934 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,934 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,935 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,936 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:58,936 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,936 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:58,936 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:58,936 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,937 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:58,937 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,937 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,937 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,937 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,937 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,938 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,938 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,939 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,939 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,939 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,940 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:58,940 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,940 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:58,940 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,940 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,941 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,941 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:58,941 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,941 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:58,941 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,942 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:58,942 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,943 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:58,943 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,943 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,943 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,943 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,944 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,944 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,944 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,944 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,944 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,944 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,945 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:58,946 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,946 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:58,946 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,946 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,947 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,947 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,947 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,947 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,947 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,947 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,948 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,949 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,949 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,950 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:58,950 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,950 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:58,950 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:58,950 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,951 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:58,951 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,951 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,951 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,951 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,952 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,952 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,952 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,953 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:58,953 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,953 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:58,954 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,954 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,954 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,954 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,954 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,955 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,955 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,955 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,955 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,956 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,957 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:58,957 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,958 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:58,958 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,958 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,958 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,958 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,959 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,959 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,959 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,959 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,959 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,960 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,961 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:58,962 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,962 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:58,962 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,962 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,962 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,963 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,963 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,963 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,963 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,963 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,964 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,965 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,966 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:58,966 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,966 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:58,966 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,966 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,967 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,967 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,967 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,967 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,967 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,968 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,968 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,968 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,969 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:58,969 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,969 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:58,969 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:58,970 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,970 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:58,970 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,970 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,970 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,971 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,971 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,971 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,971 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,972 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,972 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,972 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,973 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:58,973 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,973 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:58,973 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:58,974 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,974 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:58,974 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,974 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,974 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,975 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,975 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,975 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,975 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,975 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,976 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,976 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,976 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:58,977 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:58,977 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,977 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:58,977 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:58,978 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,978 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:58,978 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:58,978 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,978 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:58,979 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,979 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,979 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,979 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,979 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,979 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,980 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:58,981 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:58,981 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,981 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:58,981 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,981 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,982 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,982 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,982 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,982 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,982 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,982 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,983 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,983 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,984 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:58,984 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,984 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:58,984 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:58,985 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,985 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:58,985 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,985 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,985 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,986 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,986 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,986 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,986 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,987 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,987 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,988 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,988 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,988 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,988 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,988 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,988 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,989 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,989 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,989 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,989 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,989 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,990 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,990 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,990 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,990 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:58,990 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,991 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:58,991 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,992 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:58,992 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:58,992 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,992 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:58,992 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,993 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,993 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,993 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,993 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,993 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,993 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,994 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:58,995 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,995 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:58,995 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:58,995 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,995 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:58,996 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:58,996 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,996 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:58,996 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:58,996 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:58,997 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:58,997 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:58,998 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:59,005 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,005 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:59,006 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,006 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,006 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,006 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,006 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,007 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,007 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,007 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,007 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,007 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,008 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:59,008 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,009 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:59,009 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:59,009 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,009 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:59,009 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:59,010 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,010 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:59,010 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,010 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,010 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,011 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,011 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:59,012 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:59,013 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,013 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:59,013 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,013 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,013 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,014 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,014 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,014 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,014 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,014 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,015 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,015 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,016 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:59,016 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,016 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:59,016 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,016 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,017 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,017 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,017 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,017 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,017 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,017 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,018 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,018 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,019 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:59,019 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,019 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:59,019 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:59,020 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,020 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:59,020 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,020 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,020 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,021 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,021 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,021 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,021 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,021 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,021 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,022 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,022 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,023 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:59,023 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,023 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:59,024 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,024 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,024 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,024 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,024 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,025 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,025 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,025 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,025 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,025 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,026 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:59,026 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,027 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:59,027 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,027 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,027 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,027 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,027 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,028 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,028 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,028 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,028 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,028 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,029 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,030 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:59,030 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,031 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:59,031 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,031 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,031 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,031 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,032 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,032 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,032 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,032 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,032 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,032 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,033 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,033 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,033 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,033 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,033 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,036 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'memory_profiler' -== 2023-01-27 15:12:59,036 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:59,036 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:59,036 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:59,036 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:12:59,038 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-27 15:12:59,039 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-27 15:12:59,039 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-27 15:12:59,039 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-27 15:12:59,039 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-27 15:12:59,041 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-27 15:12:59,041 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-27 15:12:59,041 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-27 15:12:59,042 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-27 15:12:59,042 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-27 15:12:59,043 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' """ -local_anndata2ri_preinstallopts += """-e 's/^requires = .*/requires = ["setuptools"]/g' """ -local_anndata2ri_preinstallopts += """-e 's/dynamic = \['version'\]/version = "%(version)s"/g' pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-27 15:12:59,043 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' -e \'s/^requires = .*/requires = ["setuptools"]/g\' -e \'s/dynamic = \\[\'version\'\\]/version = "%(version)s"/g\' pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-27 15:12:59,044 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-27 15:12:59,045 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-27 15:12:59,046 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:12:59,047 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:12:59,047 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:12:59,047 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:12:59,049 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-27 15:12:59,049 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,049 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-27 15:12:59,049 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-27 15:12:59,049 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,050 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-27 15:12:59,050 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-27 15:12:59,050 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,050 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-27 15:12:59,050 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,051 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,051 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,051 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,052 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,052 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:59,053 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-27 15:12:59,053 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,053 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-27 15:12:59,053 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,053 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,054 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,054 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,054 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,054 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,054 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,055 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,055 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,055 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,056 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-27 15:12:59,056 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,057 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-27 15:12:59,057 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-27 15:12:59,057 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,057 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-27 15:12:59,057 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,057 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,058 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,058 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,058 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,058 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,058 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,059 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:59,060 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,060 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:59,060 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-27 15:12:59,060 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,060 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-27 15:12:59,061 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:59,061 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,061 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:59,061 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-27 15:12:59,061 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,062 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-27 15:12:59,062 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,063 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-27 15:12:59,063 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,063 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-27 15:12:59,063 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,063 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,064 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,064 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,064 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,064 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,064 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,065 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,065 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,065 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,066 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-27 15:12:59,066 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,066 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-27 15:12:59,067 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,067 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,067 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,067 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,067 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,068 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,068 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,068 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,068 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,069 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,070 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-27 15:12:59,070 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,071 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-27 15:12:59,071 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-27 15:12:59,071 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,071 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-27 15:12:59,071 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,072 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,072 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,072 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,072 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,072 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,073 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,074 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-27 15:12:59,074 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,074 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-27 15:12:59,074 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-27 15:12:59,074 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,075 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-27 15:12:59,075 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,075 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,075 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,075 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,075 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,076 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,077 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,077 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,078 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-27 15:12:59,078 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,078 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-27 15:12:59,078 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-27 15:12:59,079 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,079 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-27 15:12:59,079 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,079 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,079 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,080 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,080 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,080 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,080 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,080 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,081 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,081 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,082 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-27 15:12:59,082 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,083 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-27 15:12:59,083 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,083 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,083 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,083 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,083 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,084 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,084 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,084 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,084 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,084 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,085 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,085 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,085 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,085 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,085 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,086 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-27 15:12:59,087 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,087 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-27 15:12:59,087 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-27 15:12:59,087 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,087 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-27 15:12:59,088 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,088 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,088 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,088 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,088 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,089 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,089 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,090 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-27 15:12:59,090 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,090 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-27 15:12:59,090 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-27 15:12:59,090 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,091 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-27 15:12:59,091 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,091 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,091 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,092 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,092 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,092 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,092 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,092 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,093 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,093 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,093 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:59,094 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-27 15:12:59,094 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,094 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-27 15:12:59,095 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-27 15:12:59,095 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,095 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-27 15:12:59,095 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,095 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,096 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,096 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,096 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,096 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,097 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,097 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,097 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,097 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,097 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:59,098 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-27 15:12:59,099 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,099 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-27 15:12:59,099 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-27 15:12:59,099 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,099 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-27 15:12:59,100 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-27 15:12:59,100 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,100 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-27 15:12:59,100 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,100 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,101 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,101 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-27 15:12:59,102 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-27 15:12:59,102 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,103 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-27 15:12:59,103 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,103 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,103 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,104 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,104 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,104 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,104 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,104 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,105 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,105 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,106 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-27 15:12:59,106 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,106 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-27 15:12:59,106 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-27 15:12:59,106 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,107 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-27 15:12:59,107 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,107 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,107 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,108 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,108 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,108 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,108 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,109 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-27 15:12:59,109 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,110 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-27 15:12:59,110 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,110 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,110 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,110 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,110 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,111 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,111 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,111 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,111 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,111 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,112 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,113 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-27 15:12:59,114 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,114 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-27 15:12:59,114 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,114 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,114 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,115 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,115 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,115 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,115 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,115 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,116 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,116 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,117 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-27 15:12:59,117 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,117 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-27 15:12:59,117 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,118 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,118 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,118 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,118 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,118 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,119 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,119 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,119 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,119 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,120 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-27 15:12:59,120 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,121 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-27 15:12:59,121 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,121 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,121 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,121 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,122 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,122 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,122 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,122 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,122 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,123 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,124 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-27 15:12:59,124 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,124 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-27 15:12:59,124 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-27 15:12:59,124 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,125 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-27 15:12:59,125 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-27 15:12:59,125 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,125 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-27 15:12:59,125 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,126 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,126 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,126 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,126 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,126 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,127 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,127 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,127 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-27 15:12:59,128 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:59,128 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,128 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:59,129 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,129 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,129 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,129 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,129 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,130 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,130 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,130 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,130 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,130 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,131 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-27 15:12:59,132 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,132 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-27 15:12:59,132 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-27 15:12:59,132 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,132 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-27 15:12:59,133 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,133 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,133 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,133 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,133 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,134 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,134 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,135 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-27 15:12:59,135 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,135 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-27 15:12:59,135 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-27 15:12:59,136 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,136 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-27 15:12:59,136 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,136 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,136 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,137 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,137 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,137 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,137 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,138 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,138 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,139 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-27 15:12:59,139 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,140 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-27 15:12:59,140 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-27 15:12:59,140 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,140 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-27 15:12:59,140 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,140 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,141 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,141 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,141 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,141 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,141 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,143 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-27 15:12:59,143 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,143 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-27 15:12:59,143 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,143 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,144 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,144 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,144 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,144 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,144 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,145 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,145 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,145 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,145 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,145 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,145 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,146 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,146 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,147 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-27 15:12:59,147 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,147 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-27 15:12:59,148 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-27 15:12:59,148 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,148 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-27 15:12:59,148 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-27 15:12:59,148 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,149 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-27 15:12:59,149 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-27 15:12:59,149 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-27 15:12:59,149 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-27 15:12:59,149 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-27 15:12:59,150 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-27 15:12:59,153 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scib_pipeline' -== 2023-01-27 15:12:59,153 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-27 15:12:59,153 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-lhsf9mgk (previous value: '/tmp/vsc43810/eb-lhsf9mgk') -== 2023-01-27 15:12:59,153 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-lhsf9mgk as pip cache directory -== 2023-01-27 15:12:59,153 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-27 15:13:00,820 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-27 15:13:00,821 easyblock.py:1852 INFO Starting extension anndata -== 2023-01-27 15:13:00,821 build_log.py:267 INFO installing extension anndata 0.8.0 (1/12)... -== 2023-01-27 15:13:02,418 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:13:02,419 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:13:08,681 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:13:08,684 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:13:08,689 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:13:08,726 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:13:08,743 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,743 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,743 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,743 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,744 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,744 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,744 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,744 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,745 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,745 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,745 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,745 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,746 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,746 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,746 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,746 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,746 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,747 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,747 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,747 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,747 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,748 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,748 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,748 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,748 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-27 15:13:08,748 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-27 15:13:08,749 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,749 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,749 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,749 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,750 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-27 15:13:08,750 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-27 15:13:08,750 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,750 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,750 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,751 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,751 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,751 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,751 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,752 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,752 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-27 15:13:08,752 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-27 15:13:08,752 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,752 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,753 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,753 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,753 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,753 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,754 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,754 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,754 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:13:08,754 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:13:08,754 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,755 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,755 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:13:08,755 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:13:08,755 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,756 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,756 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,756 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,756 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,756 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,757 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:13:08,757 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-27 15:13:08,757 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,757 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,758 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:13:08,758 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-27 15:13:08,758 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,758 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,758 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-27 15:13:08,759 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-27 15:13:08,759 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,759 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-27 15:13:08,759 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,759 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,760 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,760 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,760 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,760 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,761 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,761 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,761 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,761 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,761 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,762 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-27 15:13:08,762 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,762 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,762 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,763 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,763 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-27 15:13:08,763 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-27 15:13:08,763 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-27 15:13:08,764 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-27 15:13:08,764 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,764 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,764 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,764 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,765 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,765 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,765 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,765 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,766 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-27 15:13:08,766 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-27 15:13:08,766 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,766 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-27 15:13:08,766 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-27 15:13:08,767 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-27 15:13:08,767 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:13:08,767 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:13:08,767 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:13:08,768 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-27 15:13:08,768 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-27 15:13:08,768 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-27 15:13:08,768 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-27 15:13:08,768 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-27 15:13:08,769 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-27 15:13:08,769 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-27 15:13:08,769 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-27 15:13:08,769 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-27 15:13:08,769 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-27 15:13:08,770 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-27 15:13:08,770 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,770 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-27 15:13:08,770 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-27 15:13:08,771 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-27 15:13:08,771 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-27 15:13:08,771 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-27 15:13:08,771 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-27 15:13:08,771 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-27 15:13:08,772 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-27 15:13:08,772 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-27 15:13:08,772 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-27 15:13:08,772 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-27 15:13:08,773 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,773 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,773 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,773 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-27 15:13:08,773 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-27 15:13:08,774 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-27 15:13:08,774 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-27 15:13:08,774 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-27 15:13:08,774 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,775 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-27 15:13:08,775 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-27 15:13:08,775 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-27 15:13:08,775 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-27 15:13:08,775 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-27 15:13:08,776 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,776 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-27 15:13:08,776 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,776 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-27 15:13:08,784 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,784 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-27 15:13:08,784 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,784 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-27 15:13:08,974 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:08,974 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:08,975 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:13:14,101 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:13:14,870 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:13:14,883 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-27 15:13:15,141 build_log.py:267 INFO configuring... -== 2023-01-27 15:13:15,149 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-27 15:13:15,149 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:13:15,343 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:13:15,344 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:13:15,344 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:13:15,634 build_log.py:267 INFO building... -== 2023-01-27 15:13:15,642 build_log.py:267 INFO testing... -== 2023-01-27 15:13:15,650 build_log.py:267 INFO installing... -== 2023-01-27 15:13:15,658 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:13:15,797 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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(previous value: 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s:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python') -== 2023-01-27 15:13:15,797 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:13:15,798 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:13:15,798 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:13:21,067 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:13:21,068 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:13:21,079 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:13:28,247 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata/anndata-0.8.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata - Building wheel for anndata (pyproject.toml): started - Building wheel for anndata (pyproject.toml): finished with status 'done' - Created wheel for anndata: filename=anndata-0.8.0-py3-none-any.whl size=96088 sha256=2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/94/11/1a/a47764057948cf4860f716a8020c41e1d6213fcb0c390ad796 -Successfully built anndata -Installing collected packages: anndata -Successfully installed anndata-0.8.0 - -== 2023-01-27 15:13:28,248 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:13:28,249 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:13:28,251 build_log.py:267 INFO ... (took 27 secs) -== 2023-01-27 15:13:28,259 easyblock.py:1852 INFO Starting extension anndata2ri -== 2023-01-27 15:13:28,260 build_log.py:267 INFO installing extension anndata2ri 1.1 (2/12)... -== 2023-01-27 15:13:30,025 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:13:30,025 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:13:30,026 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:13:30,031 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:13:30,034 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:13:30,060 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:13:30,077 environment.py:93 INFO Environment variable 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15:13:30,079 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,079 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,079 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,080 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,080 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,080 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,080 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,080 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,081 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,081 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,081 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,081 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,082 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,082 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,082 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,082 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,083 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:30,083 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:30,083 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,083 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,083 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:30,084 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:30,084 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:30,084 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:30,084 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,085 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,085 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,085 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,085 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,086 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,086 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,086 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,086 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,086 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,087 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,087 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,087 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,087 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:30,088 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:30,088 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:30,088 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,088 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,088 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:30,089 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:30,089 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:30,089 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:30,089 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:30,090 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:30,090 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:30,090 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:30,090 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:30,091 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:30,091 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,091 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,091 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:30,091 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:30,092 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:30,092 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:30,092 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:30,092 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:30,093 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:30,093 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:30,093 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:13:30,093 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:13:30,094 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:30,094 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:30,094 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,094 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:30,094 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,095 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,095 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,095 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,095 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,096 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,096 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,096 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,096 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:13:30,097 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:13:30,097 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,097 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,097 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,097 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,098 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:13:30,098 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:13:30,098 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:13:30,098 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:13:30,099 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,099 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,099 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,099 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,100 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,100 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,100 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,100 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:30,100 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:13:30,101 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:13:30,101 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:13:30,101 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:13:30,101 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:13:30,102 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:13:30,102 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:30,102 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:30,102 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:30,102 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:30,103 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:13:30,103 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:13:30,103 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:13:30,103 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:13:30,104 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,104 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,104 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,104 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,105 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,105 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:30,105 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:13:30,105 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:13:30,106 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:13:30,106 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:13:30,106 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:13:30,106 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:13:30,106 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:13:30,107 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:13:30,107 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:30,107 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:30,107 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:30,108 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:30,108 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,108 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,108 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,109 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,109 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,109 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:30,109 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:13:30,110 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:13:30,110 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:13:30,110 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:13:30,110 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:13:30,110 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:13:30,111 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:13:30,111 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:13:30,111 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:13:30,111 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:13:30,112 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:13:30,112 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:13:30,112 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,112 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:30,113 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,113 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:30,117 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:30,117 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:30,118 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:13:31,110 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:13:31,822 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:13:31,833 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-27 15:13:31,958 build_log.py:267 INFO configuring... -== 2023-01-27 15:13:31,963 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:13:31,964 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:13:32,186 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:13:32,187 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:13:32,188 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:13:32,445 build_log.py:267 INFO building... -== 2023-01-27 15:13:32,454 build_log.py:267 INFO testing... -== 2023-01-27 15:13:32,462 build_log.py:267 INFO installing... -== 2023-01-27 15:13:32,477 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:13:32,478 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:13:32,479 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:13:33,348 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:13:33,349 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:13:33,360 run.py:236 INFO running cmd: sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' -e 's/^requires = .*/requires = ["setuptools"]/g' -e 's/dynamic = \['version'\]/version = "1.1"/g' pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:13:50,809 run.py:648 INFO cmd "sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' -e 's/^requires = .*/requires = ["setuptools"]/g' -e 's/dynamic = \['version'\]/version = "1.1"/g' pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri/anndata2ri-1.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata2ri - Building wheel for anndata2ri (pyproject.toml): started - Building wheel for anndata2ri (pyproject.toml): finished with status 'done' - Created wheel for anndata2ri: filename=anndata2ri-0.0.0-py3-none-any.whl size=25196 sha256=cd9a9d3d14f60389910d9ab01bb7dac8a860ec21f92f5956d96c7705f44dfa86 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/b4/73/9d/ae9b4a9918b0b78dff74f45e3a6b44f17c918aa56fb3eb9357 -Successfully built anndata2ri -Installing collected packages: anndata2ri -Successfully installed anndata2ri-0.0.0 - -== 2023-01-27 15:13:50,810 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:13:50,810 environment.py:93 INFO Environment variable PYTHONPATH set to 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(previous value: 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-== 2023-01-27 15:13:50,811 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:13:50,811 build_log.py:267 INFO ... (took 22 secs) -== 2023-01-27 15:13:50,819 easyblock.py:1852 INFO Starting extension get_version -== 2023-01-27 15:13:50,821 build_log.py:267 INFO installing extension get_version 3.5.4 (3/12)... -== 2023-01-27 15:13:52,560 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:13:52,561 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:13:52,561 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:13:52,568 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:13:52,571 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:13:52,598 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:13:52,611 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,612 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,612 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,612 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,612 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,613 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,613 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,613 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,613 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,614 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,614 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,614 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,614 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,614 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,615 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,615 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,615 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,615 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,616 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,616 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,616 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,616 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,617 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,617 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,617 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:52,617 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:52,617 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,618 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,618 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,618 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,618 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:52,619 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:52,619 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,619 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,619 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,620 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,620 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,620 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,620 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,620 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,621 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,621 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,621 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,621 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,622 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,622 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:13:52,622 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:52,622 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:52,623 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,623 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,623 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:52,623 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:52,623 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:52,624 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:52,624 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:52,624 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:52,624 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:52,625 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:52,625 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:52,625 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:13:52,625 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,626 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,626 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:52,626 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:13:52,626 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:52,626 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:13:52,627 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:52,627 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:13:52,627 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:52,627 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:13:52,628 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:13:52,628 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:13:52,628 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,628 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:13:52,629 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,629 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:13:52,629 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,629 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,630 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,630 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,630 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,630 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,630 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,631 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,631 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:13:52,631 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:13:52,631 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,632 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,632 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,632 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,632 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:13:52,633 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:13:52,633 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:13:52,633 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:13:52,633 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,634 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,634 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,634 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,634 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,634 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,635 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,635 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:13:52,635 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:13:52,635 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:13:52,636 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:13:52,636 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:13:52,636 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:13:52,636 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:13:52,636 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:52,637 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:52,637 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:52,637 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:13:52,637 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:13:52,638 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:13:52,638 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:13:52,638 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:13:52,638 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,639 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,639 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,639 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,639 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,639 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:13:52,640 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:13:52,640 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:13:52,640 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:13:52,640 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:13:52,641 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:13:52,641 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:13:52,641 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:13:52,641 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:13:52,642 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:52,642 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:13:52,642 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:52,642 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:13:52,642 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,643 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,643 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,643 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,643 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,644 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:13:52,644 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:13:52,644 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:13:52,644 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:13:52,645 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:13:52,645 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:13:52,645 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:13:52,645 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:13:52,645 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:13:52,646 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:13:52,646 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:13:52,646 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:13:52,646 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:13:52,647 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,647 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:13:52,647 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,647 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:13:52,653 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:52,653 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:13:52,654 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:13:53,450 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:13:54,103 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:13:54,113 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-27 15:13:54,271 build_log.py:267 INFO configuring... -== 2023-01-27 15:13:54,279 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:13:54,280 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:13:54,472 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:13:54,473 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:13:54,473 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:13:54,765 build_log.py:267 INFO building... -== 2023-01-27 15:13:54,773 build_log.py:267 INFO testing... -== 2023-01-27 15:13:54,781 build_log.py:267 INFO installing... -== 2023-01-27 15:13:54,789 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:13:54,790 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:13:54,791 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:13:59,276 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:13:59,277 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:13:59,289 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:14:04,794 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version/get_version-3.5.4 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: get_version - Building wheel for get_version (pyproject.toml): started - Building wheel for get_version (pyproject.toml): finished with status 'done' - Created wheel for get_version: filename=get_version-3.5.4-py3-none-any.whl size=18331 sha256=b1d2797ea010ffb087315303edef89afb1a19d0e897a350d63db3b928742bb59 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/cf/80/18/e46eb57534df3a1ed6a8f0619f3da9ad4a9f76a90c82fe903d -Successfully built get_version -Installing collected packages: get_version -Successfully installed get_version-3.5.4 - -== 2023-01-27 15:14:04,795 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:14:04,796 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:14:04,797 build_log.py:267 INFO ... (took 13 secs) -== 2023-01-27 15:14:04,805 easyblock.py:1852 INFO Starting extension trvaep -== 2023-01-27 15:14:04,806 build_log.py:267 INFO installing extension trvaep 0.1.0 (4/12)... -== 2023-01-27 15:14:06,481 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:14:06,482 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:14:06,482 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:14:06,484 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:14:06,486 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:14:06,499 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:14:06,505 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,505 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,505 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,505 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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15:14:06,506 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,506 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,507 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,508 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,509 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:14:06,510 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:14:06,511 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:14:06,512 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,513 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:14:06,514 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:14:06,515 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:14:06,516 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:14:06,517 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,518 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:14:06,519 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,520 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:14:06,523 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:14:06,523 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:14:06,523 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:14:07,455 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:14:08,200 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:14:08,210 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-27 15:14:08,427 build_log.py:267 INFO configuring... -== 2023-01-27 15:14:08,436 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:14:08,436 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:14:08,669 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:14:08,670 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:14:08,671 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:14:08,952 build_log.py:267 INFO building... -== 2023-01-27 15:14:08,961 build_log.py:267 INFO testing... -== 2023-01-27 15:14:08,969 build_log.py:267 INFO installing... -== 2023-01-27 15:14:08,977 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:14:08,978 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:14:08,978 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:14:09,933 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:14:09,934 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:14:09,945 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:15:21,453 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: trvaep - Building wheel for trvaep (pyproject.toml): started - Building wheel for trvaep (pyproject.toml): finished with status 'done' - Created wheel for trvaep: filename=trvaep-0.1.0-py2.py3-none-any.whl size=16692 sha256=6f8b3ec8d5752a10c22dc8900f48aa03bc0f05a6209e21a3ecb38dfa2bfa7dc4 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/e6/45/0e/649225275b43c3c10635b7b5637466bc4b79c1673432fe2c17 -Successfully built trvaep -Installing collected packages: trvaep -Successfully installed trvaep-0.1.0 - -== 2023-01-27 15:15:21,454 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:15:21,455 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:15:21,456 build_log.py:267 INFO ... (took 1 min 16 secs) -== 2023-01-27 15:15:21,464 easyblock.py:1852 INFO Starting extension annoy -== 2023-01-27 15:15:21,466 build_log.py:267 INFO installing extension annoy 1.17.1 (5/12)... -== 2023-01-27 15:15:23,194 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:15:23,195 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:15:23,195 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:15:23,201 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:15:23,205 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:15:23,233 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:15:23,251 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,251 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,251 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,251 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,252 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,252 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,252 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,252 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,253 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,253 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,253 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,253 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,253 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,254 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,254 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,254 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,254 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,255 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,255 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,255 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,255 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,255 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,256 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,256 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,256 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:15:23,256 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:15:23,257 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,257 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,257 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,257 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,257 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:15:23,258 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:15:23,258 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,258 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,258 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,259 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,259 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,259 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,259 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,259 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,260 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,260 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,260 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,260 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,261 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,261 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:15:23,261 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:15:23,261 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:15:23,262 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,262 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,262 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:15:23,262 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:15:23,262 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:15:23,263 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:15:23,263 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:15:23,263 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:15:23,263 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:15:23,264 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:15:23,264 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:15:23,264 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:15:23,264 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,264 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,265 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:15:23,265 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:15:23,265 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:15:23,265 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:15:23,266 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:15:23,266 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:15:23,266 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:15:23,266 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:15:23,266 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:15:23,267 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:15:23,267 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,267 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:15:23,267 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,268 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:15:23,268 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,268 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,268 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,268 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,269 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,269 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,269 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,269 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,270 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:15:23,270 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:15:23,270 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,270 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,271 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,271 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,271 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:15:23,271 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:15:23,271 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:15:23,272 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:15:23,272 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,272 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,272 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,273 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,273 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,273 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:15:23,274 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:15:23,274 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:15:23,274 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:15:23,274 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:15:23,275 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:15:23,275 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:15:23,275 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:15:23,275 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:15:23,275 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:15:23,276 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:15:23,276 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:15:23,276 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:15:23,276 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:15:23,277 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:15:23,277 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,277 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,277 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,277 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,278 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,278 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:15:23,278 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:15:23,278 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:15:23,279 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:15:23,279 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:15:23,279 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:15:23,279 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:15:23,279 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:15:23,280 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:15:23,280 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:15:23,280 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:15:23,280 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:15:23,281 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:15:23,281 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,281 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,281 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,281 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,282 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,282 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:15:23,282 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:15:23,282 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:15:23,283 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:15:23,283 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:15:23,283 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:15:23,283 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:15:23,283 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:15:23,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:15:23,284 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:15:23,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:15:23,284 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:15:23,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:15:23,285 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:15:23,285 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,286 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:15:23,290 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:15:23,291 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:15:23,291 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:15:26,650 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:15:27,436 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:15:27,447 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-27 15:15:27,686 build_log.py:267 INFO configuring... -== 2023-01-27 15:15:27,694 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:15:27,694 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:15:27,924 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:15:27,925 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:15:27,926 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:15:28,204 build_log.py:267 INFO building... -== 2023-01-27 15:15:28,212 build_log.py:267 INFO testing... -== 2023-01-27 15:15:28,220 build_log.py:267 INFO installing... -== 2023-01-27 15:15:28,228 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-27 15:15:28,229 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:15:28,229 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:15:28,230 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:15:33,209 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:15:33,210 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:15:33,222 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:16:04,466 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy/annoy-1.17.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: annoy - Building wheel for annoy (setup.py): started - Building wheel for annoy (setup.py): finished with status 'done' - Created wheel for annoy: filename=annoy-1.17.1-cp310-cp310-linux_x86_64.whl size=541211 sha256=180e70fa5c0d856cb44cfefaba08466107a0e670b43baf24e4345726bcca84b5 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/34/d8/0d/f1b41ca54eef81939034f6d0bcb24de59097763a7273175652 -Successfully built annoy -Installing collected packages: annoy -Successfully installed annoy-1.17.1 - -== 2023-01-27 15:16:04,467 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:16:04,468 environment.py:93 INFO Environment variable PYTHONPATH 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-== 2023-01-27 15:16:04,469 build_log.py:267 INFO ... (took 42 secs) -== 2023-01-27 15:16:04,477 easyblock.py:1852 INFO Starting extension geosketch -== 2023-01-27 15:16:04,477 build_log.py:267 INFO installing extension geosketch 1.2 (6/12)... -== 2023-01-27 15:16:06,200 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:16:06,201 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:16:06,201 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:16:06,207 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:16:06,210 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:16:06,225 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:16:06,231 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,231 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,231 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,231 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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15:16:06,231 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,232 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,233 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,234 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,235 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:06,236 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:06,237 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,238 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,239 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,240 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:06,241 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,242 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:06,243 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,244 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:06,245 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,246 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:06,249 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:06,250 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:06,250 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:16:07,617 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:16:08,357 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:16:08,368 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-27 15:16:08,633 build_log.py:267 INFO configuring... -== 2023-01-27 15:16:08,641 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:16:08,642 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:16:08,843 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:16:08,844 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:16:08,844 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:16:09,137 build_log.py:267 INFO building... -== 2023-01-27 15:16:09,145 build_log.py:267 INFO testing... -== 2023-01-27 15:16:09,153 build_log.py:267 INFO installing... -== 2023-01-27 15:16:09,162 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:16:09,163 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:16:09,163 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:16:11,815 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:16:11,815 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:16:11,827 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:16:21,887 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch/geosketch-1.2 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: geosketch - Building wheel for geosketch (setup.py): started - Building wheel for geosketch (setup.py): finished with status 'done' - Created wheel for geosketch: filename=geosketch-1.2-py3-none-any.whl size=8171 sha256=86414700a7fe8b337ecb07a7558d8ba5e19118625e79772fb5fa6d9be579cc16 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/96/19/50/8ce27075d8f5e8556d06fab21bc1d6b261b472b9a63a7a6da8 -Successfully built geosketch -Installing collected packages: geosketch -Successfully installed geosketch-1.2 - -== 2023-01-27 15:16:21,888 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:16:21,889 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:16:21,890 build_log.py:267 INFO ... (took 17 secs) -== 2023-01-27 15:16:21,898 easyblock.py:1852 INFO Starting extension fbpca -== 2023-01-27 15:16:21,899 build_log.py:267 INFO installing extension fbpca 1.0 (7/12)... -== 2023-01-27 15:16:23,580 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:16:23,581 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:16:23,581 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:16:23,583 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:16:23,593 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:16:23,618 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:16:23,630 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,630 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,631 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,631 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,631 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,631 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,631 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,632 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,632 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,632 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,632 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,633 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,633 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,633 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,633 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,634 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,634 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,634 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,634 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,634 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,635 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,635 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,635 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,635 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,636 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:23,636 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:23,636 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,636 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,636 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,637 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,637 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:23,637 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:23,637 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,638 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,638 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,638 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,638 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,639 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,639 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,639 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,639 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,639 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,640 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,640 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,640 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,640 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:23,641 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:23,641 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:23,641 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,641 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,642 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:23,642 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:23,642 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:23,642 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:23,642 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:23,643 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:23,643 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:23,643 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:23,643 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:23,644 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:23,644 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,644 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,644 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:23,644 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:23,645 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:23,645 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:23,645 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:23,645 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:23,646 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:23,646 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:23,646 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:23,646 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:23,646 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,647 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:23,647 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,647 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:23,647 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,648 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,648 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,648 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,648 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,649 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,649 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,649 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,649 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:23,649 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:23,650 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,650 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,650 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,650 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,651 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:23,651 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:23,651 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:23,651 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:23,651 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,652 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,652 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,652 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,652 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,653 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,653 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,653 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:23,653 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:23,653 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:23,654 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:23,654 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:23,654 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:23,654 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:23,655 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:23,655 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:23,655 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:23,655 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:23,655 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:23,656 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:23,656 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:23,656 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:23,656 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,657 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,657 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,657 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,657 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,657 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:23,658 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:23,658 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:23,658 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:23,658 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:23,659 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:23,659 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:23,659 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:23,659 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:23,660 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:23,660 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:23,660 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:23,660 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:23,660 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,661 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,661 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,661 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,661 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,662 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:23,662 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:23,662 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:23,662 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:23,662 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:23,663 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:23,663 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:23,663 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:23,663 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:23,664 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:23,664 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:23,664 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:23,664 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:23,664 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,665 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:23,665 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,665 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:23,669 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:23,670 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:23,670 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:16:24,304 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:16:24,840 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:16:24,851 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-27 15:16:25,007 build_log.py:267 INFO configuring... -== 2023-01-27 15:16:25,014 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:16:25,015 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:16:25,247 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:16:25,248 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:16:25,248 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:16:25,545 build_log.py:267 INFO building... -== 2023-01-27 15:16:25,553 build_log.py:267 INFO testing... -== 2023-01-27 15:16:25,561 build_log.py:267 INFO installing... -== 2023-01-27 15:16:25,570 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:16:25,570 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:16:25,571 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:16:25,571 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:16:26,905 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:16:26,906 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:16:26,917 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:16:33,758 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca/fbpca-1.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: fbpca - Building wheel for fbpca (setup.py): started - Building wheel for fbpca (setup.py): finished with status 'done' - Created wheel for fbpca: filename=fbpca-1.0-py3-none-any.whl size=11375 sha256=573d28659ad6403b92996c5f37cf8dbe5f4b65c41667266c513810d6576ca110 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/b0/18/24/41fc8c8485cd4ac05bba528fe1e48cff72ac980077e200ef5c -Successfully built fbpca -Installing collected packages: fbpca -Successfully installed fbpca-1.0 - -== 2023-01-27 15:16:33,759 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:16:33,760 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:16:33,761 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-27 15:16:33,769 easyblock.py:1852 INFO Starting extension scgen -== 2023-01-27 15:16:33,770 build_log.py:267 INFO installing extension scgen 2.1.0 (8/12)... -== 2023-01-27 15:16:35,522 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:16:35,523 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:16:35,523 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:16:35,525 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:16:35,528 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:16:35,551 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:16:35,563 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,564 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,564 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,564 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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15:16:35,565 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,566 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,566 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,566 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,566 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,566 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,567 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,567 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,567 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,567 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,568 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,568 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,568 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,568 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,568 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,569 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,569 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:35,569 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:35,569 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,570 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,570 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,570 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,570 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:35,571 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:35,571 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,571 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,571 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,571 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,572 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,572 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,572 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,572 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,573 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,573 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,573 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,573 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,573 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,574 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:35,574 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:35,574 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:35,574 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,575 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,575 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:35,575 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:35,575 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:35,575 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:35,576 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:35,576 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:35,576 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:35,576 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:35,577 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:35,577 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:35,577 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,577 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,577 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:35,578 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:35,578 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:35,578 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:35,578 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:35,579 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:35,579 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:35,579 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:35,579 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:35,579 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:35,580 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,580 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:35,580 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,580 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:35,581 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,581 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,581 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,581 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,582 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,582 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,582 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,582 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,582 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:35,583 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:35,583 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,583 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,583 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,584 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,584 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:35,584 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:35,584 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:35,584 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:35,585 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,585 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,585 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,585 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,586 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,586 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,586 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,586 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:35,586 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:35,587 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:35,587 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:35,587 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:35,587 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:35,588 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:35,588 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:35,588 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:35,588 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:35,588 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:35,589 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:35,589 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:35,589 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:35,589 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:35,590 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,590 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,590 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,590 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,591 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,591 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:35,591 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:35,591 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:35,591 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:35,592 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:35,592 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:35,592 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:35,592 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:35,593 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:35,593 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:35,593 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:35,593 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:35,593 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:35,594 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,594 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,594 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,594 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,595 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,595 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:35,595 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:35,595 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:35,595 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:35,596 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:35,596 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:35,596 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:35,596 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:35,597 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:35,597 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:35,597 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:35,597 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:35,597 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:35,598 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,598 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:35,598 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,598 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:35,601 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:35,602 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:35,602 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:16:36,322 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:16:37,194 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:16:37,205 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-27 15:16:37,319 build_log.py:267 INFO configuring... -== 2023-01-27 15:16:37,324 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:16:37,324 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:16:37,554 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:16:37,555 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:16:37,555 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:16:37,831 build_log.py:267 INFO building... -== 2023-01-27 15:16:37,840 build_log.py:267 INFO testing... -== 2023-01-27 15:16:37,848 build_log.py:267 INFO installing... -== 2023-01-27 15:16:37,856 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:16:37,857 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:16:37,857 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:16:38,665 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:16:38,666 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:16:38,677 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:16:44,851 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen/scgen-2.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: scgen - Building wheel for scgen (pyproject.toml): started - Building wheel for scgen (pyproject.toml): finished with status 'done' - Created wheel for scgen: filename=scgen-2.1.0-py3-none-any.whl size=24388 sha256=1cf2efc967feca0940e00e539e1e0c4115aead2110b0890d83cd42e006d9cc5e - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/90/b6/50/264078e8cb79952f66837774ffab4bafee3ffccf57b99d54a2 -Successfully built scgen -Installing collected packages: scgen -Successfully installed scgen-2.1.0 - -== 2023-01-27 15:16:44,852 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:16:44,852 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:16:44,854 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-27 15:16:44,862 easyblock.py:1852 INFO Starting extension bbknn -== 2023-01-27 15:16:44,862 build_log.py:267 INFO installing extension bbknn 1.5.1 (9/12)... -== 2023-01-27 15:16:46,571 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:16:46,571 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:16:46,572 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:16:46,573 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:16:46,576 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:16:46,600 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:16:46,612 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,613 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,613 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,613 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,613 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,613 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,614 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,614 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,614 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,614 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,615 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,615 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,615 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,615 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,616 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,616 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,616 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,616 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,616 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,617 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,617 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,617 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,617 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,618 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,618 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:46,618 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:46,618 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,618 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,619 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,619 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,619 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:46,619 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:46,620 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,620 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,620 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,620 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,621 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,621 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,621 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,621 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,621 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,622 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,622 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,622 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,622 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,623 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:46,623 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:46,623 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:46,623 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,623 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,624 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:46,624 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:46,624 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:46,624 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:46,625 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:46,625 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:46,625 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:46,625 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:46,625 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:46,626 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:46,626 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,626 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,626 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:46,627 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:46,627 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:46,627 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:46,627 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:46,627 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:46,628 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:46,628 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:46,628 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:46,628 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:46,629 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,629 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:46,629 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,629 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:46,630 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,630 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,630 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,630 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,630 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,631 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,631 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,631 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,631 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:46,632 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:46,632 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,632 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,632 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,632 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,633 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:46,633 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:46,633 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:46,633 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:46,634 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,634 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,634 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,634 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,635 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,635 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,635 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,635 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:46,636 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:46,636 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:46,636 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:46,636 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:46,636 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:46,637 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:46,637 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:46,637 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:46,637 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:46,638 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:46,638 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:46,638 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:46,638 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:46,638 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:46,639 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,639 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,639 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,639 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,640 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,640 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:46,640 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:46,640 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:46,640 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:46,641 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:46,641 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:46,641 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:46,641 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:46,642 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:46,642 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:46,642 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:46,642 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:46,642 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:46,643 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,643 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,643 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,643 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,644 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,644 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:46,644 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:46,644 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:46,644 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:46,645 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:46,645 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:46,645 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:46,645 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:46,646 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:46,646 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:46,646 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:46,646 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:46,647 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:46,647 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,647 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:46,647 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,647 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:46,650 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:46,651 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:46,651 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:16:47,265 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:16:47,997 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:16:48,008 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-27 15:16:48,212 build_log.py:267 INFO configuring... -== 2023-01-27 15:16:48,220 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:16:48,220 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:16:48,443 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:16:48,444 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:16:48,444 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:16:48,737 build_log.py:267 INFO building... -== 2023-01-27 15:16:48,746 build_log.py:267 INFO testing... -== 2023-01-27 15:16:48,754 build_log.py:267 INFO installing... -== 2023-01-27 15:16:48,762 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-27 15:16:48,762 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:16:48,763 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:16:48,763 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:16:49,560 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:16:49,560 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:16:49,571 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:16:56,455 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn/bbknn-1.5.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: bbknn - Building wheel for bbknn (setup.py): started - Building wheel for bbknn (setup.py): finished with status 'done' - Created wheel for bbknn: filename=bbknn-1.5.1-py3-none-any.whl size=11302 sha256=42bef3d39b8c51f81df5365d722a608d0ea721b05ad9d412a2bc2dafff05d804 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/a2/98/c3/e85f3a913b85dad73420961ba1f78aa94255ec11e5cdab58ef -Successfully built bbknn -Installing collected packages: bbknn -Successfully installed bbknn-1.5.1 - -== 2023-01-27 15:16:56,456 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:16:56,457 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:16:56,458 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-27 15:16:56,466 easyblock.py:1852 INFO Starting extension scanorama -== 2023-01-27 15:16:56,466 build_log.py:267 INFO installing extension scanorama 1.7.3 (10/12)... -== 2023-01-27 15:16:58,183 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:16:58,184 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:16:58,184 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:16:58,186 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:16:58,189 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:16:58,212 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:16:58,224 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,225 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,225 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,225 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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15:16:58,226 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,227 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,227 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,227 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,227 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,228 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,228 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,228 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,228 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,228 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,229 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,229 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,229 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,229 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,230 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,230 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,230 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:58,230 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:58,231 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,231 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,231 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,231 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,231 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:58,232 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:58,232 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,232 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,232 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,233 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,233 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,233 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,233 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,233 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,234 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,234 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,234 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,234 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,235 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,235 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:16:58,235 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:58,235 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:58,236 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,236 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,236 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:58,236 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:58,236 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:58,237 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:58,237 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:58,237 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:58,237 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:58,238 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:58,238 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:58,238 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:16:58,238 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,238 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,239 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:58,239 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:16:58,239 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:58,239 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:16:58,240 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:58,240 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:16:58,240 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:58,240 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:16:58,240 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:58,241 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:16:58,241 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,241 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:16:58,241 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,242 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:16:58,242 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,242 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,242 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,243 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,243 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,243 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,243 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,243 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,244 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:58,244 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:16:58,244 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,244 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,245 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,245 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,245 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:58,245 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:16:58,246 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:58,246 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:16:58,246 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,246 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,246 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,247 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,247 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,247 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,247 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,248 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:16:58,248 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:58,248 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:16:58,248 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:58,248 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:16:58,249 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:58,249 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:16:58,249 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:58,249 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:58,250 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:58,250 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:16:58,250 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:58,250 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:16:58,251 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:58,251 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:16:58,251 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,251 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,251 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,252 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,252 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,252 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:16:58,252 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:58,253 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:16:58,253 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:58,253 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:16:58,253 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:58,253 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:16:58,254 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:58,254 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:16:58,254 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:58,254 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:16:58,255 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:58,255 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:16:58,255 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,255 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,256 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,256 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,256 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,256 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:16:58,256 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:58,257 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:16:58,257 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:58,257 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:16:58,257 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:58,258 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:16:58,258 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:58,258 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:16:58,258 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:58,258 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:16:58,259 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:58,259 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:16:58,259 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,259 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:16:58,260 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,260 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:16:58,263 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:58,263 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:16:58,263 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:16:58,975 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:16:59,708 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:16:59,719 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-27 15:16:59,930 build_log.py:267 INFO configuring... -== 2023-01-27 15:16:59,938 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:16:59,939 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:17:00,171 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:17:00,171 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:17:00,172 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:17:00,453 build_log.py:267 INFO building... -== 2023-01-27 15:17:00,461 build_log.py:267 INFO testing... -== 2023-01-27 15:17:00,469 build_log.py:267 INFO installing... -== 2023-01-27 15:17:00,477 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:17:00,478 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:17:00,479 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:17:01,299 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:17:01,299 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:17:01,310 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:17:08,131 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama/scanorama-1.7.3 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scanorama - Building wheel for scanorama (setup.py): started - Building wheel for scanorama (setup.py): finished with status 'done' - Created wheel for scanorama: filename=scanorama-1.7.3-py3-none-any.whl size=12534 sha256=deb51ecf0e4192a55228dc007970b01f21375a5b950c437490c9fe086c977fb3 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/ac/de/e4/915d8c75e3fd468ac8458787f467bb930ef26e8676c79079a8 -Successfully built scanorama -Installing collected packages: scanorama -Successfully installed scanorama-1.7.3 - -== 2023-01-27 15:17:08,132 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:17:08,132 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:17:08,134 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-27 15:17:08,142 easyblock.py:1852 INFO Starting extension memory-profiler -== 2023-01-27 15:17:08,150 build_log.py:267 INFO installing extension memory-profiler 0.61.0 (11/12)... -== 2023-01-27 15:17:09,815 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-27 15:17:09,815 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-27 15:17:09,816 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-27 15:17:09,818 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-27 15:17:09,821 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-27 15:17:09,844 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-27 15:17:09,856 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,856 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,857 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,857 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,857 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,857 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,858 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,858 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,858 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,858 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,859 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,859 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,859 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,859 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,859 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,860 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,860 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,860 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,860 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,861 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,861 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,861 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,861 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,861 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,862 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:09,862 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:09,862 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,862 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,863 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,863 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,863 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:09,863 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:09,864 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,864 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,864 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,864 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,864 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,865 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,865 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,865 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,865 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,866 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,866 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,866 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,866 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,866 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:09,867 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:09,867 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:09,867 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,867 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,868 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:09,868 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:09,868 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:09,868 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:09,868 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:09,869 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:09,869 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:09,869 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:09,869 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:09,870 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:09,870 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,870 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,870 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:09,871 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:09,871 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:09,871 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:09,871 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:09,871 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:09,872 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:09,872 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:09,872 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:17:09,872 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:17:09,873 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,873 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:09,873 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,873 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:09,873 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,874 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,874 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,874 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,874 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,875 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,875 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,875 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,875 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:09,876 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:09,876 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,876 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,876 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,876 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,877 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:17:09,877 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:17:09,877 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:17:09,877 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:17:09,878 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,878 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,878 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,878 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,879 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,879 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,879 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,879 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:09,879 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:17:09,880 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:17:09,880 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:17:09,880 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:17:09,880 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:17:09,881 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:17:09,881 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:09,881 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:09,881 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:09,881 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:09,882 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:17:09,882 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:17:09,882 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:17:09,882 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:17:09,883 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,883 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,883 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,883 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,883 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,884 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:09,884 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:17:09,884 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:17:09,884 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:17:09,885 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:17:09,885 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:17:09,885 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:17:09,885 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:17:09,886 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:17:09,886 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:09,886 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:09,886 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:09,886 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:09,887 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,887 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,887 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,887 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,888 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,888 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:09,888 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:17:09,888 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:17:09,888 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:17:09,889 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:17:09,889 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:17:09,889 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:17:09,889 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:17:09,890 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:17:09,890 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:17:09,890 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:17:09,890 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:17:09,890 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:17:09,891 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,891 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:09,891 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,891 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:09,894 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:17:09,894 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:17:09,895 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:17:10,505 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:17:11,045 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:17:11,055 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-27 15:17:11,251 build_log.py:267 INFO configuring... -== 2023-01-27 15:17:11,259 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:17:11,260 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:17:11,465 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:17:11,465 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:17:11,466 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:17:11,734 build_log.py:267 INFO building... -== 2023-01-27 15:17:11,742 build_log.py:267 INFO testing... -== 2023-01-27 15:17:11,750 build_log.py:267 INFO installing... -== 2023-01-27 15:17:11,766 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:17:11,767 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:17:11,767 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:17:12,556 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:17:12,557 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:17:12,568 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:17:19,790 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler/memory_profiler-0.61.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: memory-profiler - Building wheel for memory-profiler (pyproject.toml): started - Building wheel for memory-profiler (pyproject.toml): finished with status 'done' - Created wheel for memory-profiler: filename=memory_profiler-0.61.0-py3-none-any.whl size=31822 sha256=f660c7c3b434e075487c6bbc301f36a116fc173fb4d48d8437c05175451e8d78 - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/f5/92/9d/8021a783c9757653a2695a0ce478a28faddbcbaf7491af5e7d -Successfully built memory-profiler -Installing collected packages: memory-profiler -Successfully installed memory-profiler-0.61.0 - -== 2023-01-27 15:17:19,791 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:17:19,791 environment.py:93 INFO Environment variable PYTHONPATH set to 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EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,479 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,479 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,480 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,480 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,480 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,480 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,481 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,481 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,481 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,481 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,481 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:21,482 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:21,482 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,482 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,482 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:21,483 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:21,483 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:21,483 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:21,483 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,484 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,484 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,484 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,484 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,484 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,485 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,485 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,485 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,485 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,486 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,486 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,486 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,486 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-27 15:17:21,487 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:21,487 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:21,487 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,487 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,487 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:21,488 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:21,488 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:21,488 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:21,488 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:21,489 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:21,489 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:21,489 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:21,489 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:21,489 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-27 15:17:21,490 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,490 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,490 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:21,490 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-27 15:17:21,491 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:21,491 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-27 15:17:21,491 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:21,491 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-27 15:17:21,492 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:21,492 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-27 15:17:21,492 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:17:21,492 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-27 15:17:21,492 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:21,493 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:21,493 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,493 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-27 15:17:21,493 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,494 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,494 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,494 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,494 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,494 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,495 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,495 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,495 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:21,496 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:21,496 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,496 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,496 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,496 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,497 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:17:21,497 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-27 15:17:21,497 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:17:21,497 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-27 15:17:21,498 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,498 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,499 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,499 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,499 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,499 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-27 15:17:21,499 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:17:21,500 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-27 15:17:21,500 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:17:21,500 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-27 15:17:21,500 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:17:21,501 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-27 15:17:21,501 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:21,501 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:21,501 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:21,502 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-27 15:17:21,502 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:17:21,502 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-27 15:17:21,502 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:17:21,502 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-27 15:17:21,503 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,503 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,503 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,503 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,504 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,504 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-27 15:17:21,504 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:17:21,504 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-27 15:17:21,505 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:17:21,505 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-27 15:17:21,505 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:17:21,505 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-27 15:17:21,505 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:17:21,506 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-27 15:17:21,506 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:21,506 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-27 15:17:21,506 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:21,507 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-27 15:17:21,507 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,507 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,507 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,508 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,508 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,508 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-27 15:17:21,508 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:17:21,508 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-27 15:17:21,509 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:17:21,509 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-27 15:17:21,509 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:17:21,509 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-27 15:17:21,510 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:17:21,510 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-27 15:17:21,510 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:17:21,510 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-27 15:17:21,511 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:17:21,511 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-27 15:17:21,511 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,511 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-27 15:17:21,512 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,512 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-27 15:17:21,514 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:17:21,515 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-27 15:17:21,515 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-27 15:17:22,136 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-27 15:17:22,672 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:17:22,682 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-27 15:17:24,687 build_log.py:267 INFO configuring... -== 2023-01-27 15:17:24,695 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-27 15:17:24,696 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-27 15:17:24,917 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-27 15:17:24,918 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-27 15:17:24,918 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-27 15:17:25,199 build_log.py:267 INFO building... -== 2023-01-27 15:17:25,207 build_log.py:267 INFO testing... -== 2023-01-27 15:17:25,215 build_log.py:267 INFO installing... -== 2023-01-27 15:17:25,223 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-27 15:17:25,224 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:17:25,224 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:17:26,143 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:17:26,144 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-27 15:17:26,155 run.py:236 INFO running cmd: sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-27 15:17:33,863 run.py:648 INFO cmd "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline/scib-pipeline-0.2.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scIB - Building wheel for scIB (setup.py): started - Building wheel for scIB (setup.py): finished with status 'done' - Created wheel for scIB: filename=scIB-0.1.1-py3-none-any.whl size=33634 sha256=9f038036950021001393c746e66a1c7b77822df6dd14d962df5f5e9ec10af17b - Stored in directory: /tmp/vsc43810/eb-lhsf9mgk/pip/wheels/f2/ce/97/378c3d0549dbd88cb4f21948c441418f962f2998bf438ead28 -Successfully built scIB -Installing collected packages: scIB -Successfully installed scIB-0.1.1 - -== 2023-01-27 15:17:33,864 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:17:33,864 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-27 15:17:33,865 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:17:33,865 build_log.py:267 INFO ... 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(previous value: 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-== 2023-01-27 15:17:36,462 environment.py:93 INFO Environment variable MANPATH set to 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-== 2023-01-27 15:17:36,462 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-27 15:17:36,463 environment.py:93 INFO Environment variable _LMFILES_ set to 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-== 2023-01-27 15:17:36,463 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_ACLOCAL_PATH set to 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(previous value: 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-== 2023-01-27 15:17:36,474 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-27 15:17:36,477 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to 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2023-01-27 15:17:36,532 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:36,533 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-27 15:17:36,534 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:36,535 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 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-L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-27 15:17:36,552 build_log.py:267 INFO ... (took 5 mins 9 secs) -== 2023-01-27 15:17:36,558 build_log.py:267 INFO restore after iterating... -== 2023-01-27 15:17:36,564 easyblock.py:3877 INFO Starting postiter step -== 2023-01-27 15:17:36,564 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:17:36,565 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:17:36,565 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:17:36,566 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:17:36,566 easyblock.py:3885 INFO Running method post_iter_step part of step postiter -== 2023-01-27 15:17:36,566 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:17:36,572 build_log.py:267 INFO postprocessing... -== 2023-01-27 15:17:36,578 easyblock.py:3877 INFO Starting postproc step -== 2023-01-27 15:17:36,578 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:17:36,579 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:17:36,579 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:17:36,579 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:17:36,580 easyblock.py:3885 INFO Running method post_install_step part of step postproc -== 2023-01-27 15:17:36,580 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-27 15:17:36,582 filetools.py:339 INFO Symlinked lib to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib64 -== 2023-01-27 15:17:36,582 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-27 15:17:36,588 build_log.py:267 INFO sanity checking... -== 2023-01-27 15:17:36,594 easyblock.py:3877 INFO Starting sanitycheck step -== 2023-01-27 15:17:36,594 easyconfig.py:1688 INFO Generating template values... -== 2023-01-27 15:17:36,595 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-27 15:17:36,595 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-27 15:17:36,595 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-27 15:17:36,596 easyblock.py:3885 INFO Running method sanity_check_step part of step sanitycheck -== 2023-01-27 15:17:36,596 easyblock.py:3286 INFO Using (only) sanity check paths specified by easyconfig file: {'files': [], 'dirs': ['lib/python3.10/site-packages']} -== 2023-01-27 15:17:36,602 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-27 15:17:38,367 easyblock.py:1574 INFO Fixed symlink lib64 in paths for CMAKE_LIBRARY_PATH: ['lib64'] -> [] -== 2023-01-27 15:17:38,368 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LD_LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-27 15:17:38,369 easyblock.py:1588 INFO Only retaining paths for LD_LIBRARY_PATH that contain at least one file: ['lib'] -> [] -== 2023-01-27 15:17:38,369 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-27 15:17:38,371 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-27 15:17:38,372 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, 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isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -prepend_path("CMAKE_PREFIX_PATH", root) -prepend_path("LIBRARY_PATH", pathJoin(root, "lib")) -prepend_path("PATH", pathJoin(root, "bin")) -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 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-== 2023-01-27 15:17:45,571 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-27 15:17:45,572 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-27 15:17:45,572 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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ion/3.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/graphite2/1.3.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DBus/1.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSPR/4.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSS/3.79-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qt5/5.15.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib/1.1.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-misc/0.1.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/OpenPGM/5.2.122-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libsodium/1.0.18-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/ZeroMQ/4.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxslt/1.1.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lxml/4.9.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/BeautifulSoup/4.10.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/IPython/8.5.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/rpy2/3.5.7-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/git/2.36.0-GCCcore-11.3.0-nodocs.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GitPython/3.1.27-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/snakemake/7.20.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ICU/71.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Java/11.0.2.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Graphviz/5.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GSL/2.7-GCC-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/pydot/1.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Deprecated/1.2.13-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow-SIMD/9.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/torchvision/0.13.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/adjustText/0.7.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/trvaep/0.1.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/flatbuffers-python/2.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/jax/0.3.23-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/openpyxl/3.0.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tensorboard/2.10.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/typing-extensions/4.3.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTorch-Lightning/1.7.7-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/dm-tree/0.1.8-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scvi-tools/0.19.0-foss-2022a.lua') -== 2023-01-27 15:17:45,600 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-lhsf9mgk/tmpjhl4dw1v/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-27 15:17:59,731 environment.py:93 INFO Environment variable OMPI_MCA_rmaps_base_oversubscribe set to 1 (previously undefined) -== 2023-01-27 15:17:59,732 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-27 15:17:59,732 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-27 15:17:59,734 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-27 15:17:59,734 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-27 15:18:07,236 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-27 15:18:07,246 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-27 15:18:17,576 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-27 15:18:17,577 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-27 15:18:20,892 pythonpackage.py:910 INFO Found 1 invalid packages out of 309 packages -== 2023-01-27 15:18:20,989 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): The following Python packages were likely not installed correctly because they show a version of '0.0.0': -anndata2ri -This may be solved by using a *-none-any.whl file as the source instead. See e.g. the SOURCE*_WHL templates. -Otherwise you could check if the package provides a version at all or if e.g. poetry is required (check the source for a pyproject.toml and see PEP517 for details on that). (at easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonpackage.py:923 in sanity_check_step) -== 2023-01-27 15:18:20,990 build_log.py:267 INFO ... (took 44 secs) -== 2023-01-27 15:18:20,996 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-27 15:18:21,001 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock successfully removed. -== 2023-01-27 15:18:21,002 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-27 15:18:21,002 easyblock.py:4208 WARNING build failed (first 300 chars): The following Python packages were likely not installed correctly because they show a version of '0.0.0': -anndata2ri -This may be solved by using a *-none-any.whl file as the source instead. See e.g. the SOURCE*_WHL templates. -Otherwise you could check if the package provides a version at all or if e -== 2023-01-27 15:18:21,003 easyblock.py:328 INFO Closing log for application name scib-pipeline version 0.2.0 diff --git a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230130.122458.cVzKY.log b/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230130.122458.cVzKY.log deleted file mode 100644 index ecdfebdc..00000000 --- a/33_scib_pipeline/old_logz/easybuild-scib-pipeline-0.2.0-20230130.122458.cVzKY.log +++ /dev/null @@ -1,10613 +0,0 @@ -== 2023-01-30 12:24:58,060 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host node3702.slaking.os. -== 2023-01-30 12:24:58,060 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-30 12:24:58,061 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a -== 2023-01-30 12:24:58,061 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-30 12:24:58,061 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:24:58,062 easyblock.py:288 INFO Init completed for application name scib-pipeline version 0.2.0 -== 2023-01-30 12:24:58,062 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-30 12:24:58,062 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/scib-pipeline'], 'options': {}} -== 2023-01-30 12:24:58,063 easyblock.py:4151 INFO Obtained application instance of for scib-pipeline (easyblock: PythonBundle) -== 2023-01-30 12:24:58,063 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:24:58,064 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:24:58,064 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:24:58,065 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:24:58,071 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-30 12:24:58,073 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223 (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:24:58,074 easyblock.py:4405 INFO Dumped easyconfig instance to /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/scib-pipeline-0.2.0-foss-2022a.eb -== 2023-01-30 12:24:58,076 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/easyblocks (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:24:58,096 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/easyblocks/bundle.py -== 2023-01-30 12:24:58,096 easyblock.py:4385 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/easyblocks -== 2023-01-30 12:24:58,105 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/easyblocks/pythonbundle.py -== 2023-01-30 12:24:58,105 easyblock.py:4385 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc43810/eb-e_wkopgr/reprod_20230130122458_4095223/easyblocks -== 2023-01-30 12:24:58,109 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1 -== 2023-01-30 12:24:58,111 build_log.py:267 INFO building and installing scib-pipeline/0.2.0-foss-2022a... -== 2023-01-30 12:24:58,125 filetools.py:2011 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock does not exist -== 2023-01-30 12:24:58,125 filetools.py:1952 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-30 12:24:58,126 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:24:58,164 filetools.py:1961 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-30 12:24:58,164 build_log.py:267 INFO fetching files... -== 2023-01-30 12:24:58,170 easyblock.py:3877 INFO Starting fetch step -== 2023-01-30 12:24:58,171 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:24:58,171 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:24:58,172 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:24:58,172 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:24:58,172 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-30 12:24:58,173 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-30 12:24:58,173 easyblock.py:2327 INFO no sources provided -== 2023-01-30 12:24:58,173 easyblock.py:2342 INFO no patches provided -== 2023-01-30 12:24:58,175 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata-0.8.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,175 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,175 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,176 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,189 easyblock.py:844 INFO Found file anndata-0.8.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-30 12:24:58,201 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: ef1130964bcb6c3ca3ed161b74e46a06 -== 2023-01-30 12:24:58,202 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz: 94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e -== 2023-01-30 12:24:58,202 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,203 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,203 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,203 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,575 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/s/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/scib-pipeline/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/scib-pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/scib-pipeline/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/s/scib-pipeline/checksums.json, /apps/gent/sources/scib-pipeline/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-30 12:24:58,575 easyblock.py:685 INFO Checksum for extension source anndata-0.8.0.tar.gz verified -== 2023-01-30 12:24:58,575 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,576 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for anndata2ri-1.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,577 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,577 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,577 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,579 easyblock.py:844 INFO Found file anndata2ri-1.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-30 12:24:58,597 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: 8145ef2c660bd7cba7b2cf10b027295e -== 2023-01-30 12:24:58,598 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz: bf5e5d5184efe49eb00f7d524225a9867e3dd77c6ed291eb251168fe4dc429e7 -== 2023-01-30 12:24:58,599 easyblock.py:685 INFO Checksum for extension source anndata2ri-1.1.tar.gz verified -== 2023-01-30 12:24:58,599 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,600 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for get_version-3.5.4.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,600 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,600 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,601 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,603 easyblock.py:844 INFO Found file get_version-3.5.4.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-30 12:24:58,618 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 164c51221bd5aa2281c59c68d48a05a4 -== 2023-01-30 12:24:58,619 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz: 5901c846518d55d52c1f6f037f5d2433952b46bbf36e38c52f064ae836556343 -== 2023-01-30 12:24:58,619 easyblock.py:685 INFO Checksum for extension source get_version-3.5.4.tar.gz verified -== 2023-01-30 12:24:58,619 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,620 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,621 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,621 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,621 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,623 easyblock.py:844 INFO Found file trvaep-0.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-30 12:24:58,672 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: df09bb666d1db2ad1190f3e718586a9f -== 2023-01-30 12:24:58,681 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz: e4ee8e823e67e4f11b23cdf408d900f7aba9f31449eeeb54e5bbc8aa84dfc811 -== 2023-01-30 12:24:58,681 easyblock.py:685 INFO Checksum for extension source trvaep-0.1.0.tar.gz verified -== 2023-01-30 12:24:58,681 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,682 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for annoy-1.17.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,682 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,683 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,683 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,685 easyblock.py:844 INFO Found file annoy-1.17.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-30 12:24:58,708 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: 5b7239c506f3f09b6fffd7caea8a7adf -== 2023-01-30 12:24:58,714 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz: bf177dbeafb81f63b2ac1e1246b1f26a2acc82e73ba46638734d29d8258122da -== 2023-01-30 12:24:58,714 easyblock.py:685 INFO Checksum for extension source annoy-1.17.1.tar.gz verified -== 2023-01-30 12:24:58,715 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,715 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for geosketch-1.2.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,716 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,716 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,716 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,718 easyblock.py:844 INFO Found file geosketch-1.2.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-30 12:24:58,738 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: 792544b199cb93521903d77d7ae6dace -== 2023-01-30 12:24:58,739 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz: bbfe97366b91c5927b6076d5a6738d9cfbe094efb5ac1117aab7a30b6081cc4e -== 2023-01-30 12:24:58,740 easyblock.py:685 INFO Checksum for extension source geosketch-1.2.tar.gz verified -== 2023-01-30 12:24:58,740 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,741 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for fbpca-1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,741 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,741 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,742 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,744 easyblock.py:844 INFO Found file fbpca-1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-30 12:24:58,763 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 8312632180ca9853201400914a75d5e4 -== 2023-01-30 12:24:58,764 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz: 150677642479663f317fdbb5e06dab3f98721cf7031bb4a84113d7a631c472d1 -== 2023-01-30 12:24:58,764 easyblock.py:685 INFO Checksum for extension source fbpca-1.0.tar.gz verified -== 2023-01-30 12:24:58,765 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,765 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scgen-2.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,766 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,766 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,766 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,768 easyblock.py:844 INFO Found file scgen-2.1.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-30 12:24:58,774 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 536ec702d840c41f81e1b6c2200c6718 -== 2023-01-30 12:24:58,775 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz: 0f3f23ee596b20906c22b6a324ca930b70b78c93e18d9c1846214ee84ab872bf -== 2023-01-30 12:24:58,775 easyblock.py:685 INFO Checksum for extension source scgen-2.1.0.tar.gz verified -== 2023-01-30 12:24:58,775 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,776 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for bbknn-1.5.1.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,776 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,777 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,777 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,779 easyblock.py:844 INFO Found file bbknn-1.5.1.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-30 12:24:58,787 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 9776fdf80cf3e15ef9fb307ab36be6f0 -== 2023-01-30 12:24:58,788 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz: 16da9c778ddfe363f8a3fa0d72707694d2217f94d3a87482336e8a2c6beb2160 -== 2023-01-30 12:24:58,788 easyblock.py:685 INFO Checksum for extension source bbknn-1.5.1.tar.gz verified -== 2023-01-30 12:24:58,788 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,789 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for scanorama-1.7.3.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,789 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,790 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,790 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,792 easyblock.py:844 INFO Found file scanorama-1.7.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-30 12:24:58,809 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: f0f5d506bcfe7ca8d19efa47fe9ee4fe -== 2023-01-30 12:24:58,810 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz: e1d1cdd6855b3a302f6e9e3160442a9998113e5118ac48c71bf8a21760a657b7 -== 2023-01-30 12:24:58,810 easyblock.py:685 INFO Checksum for extension source scanorama-1.7.3.tar.gz verified -== 2023-01-30 12:24:58,810 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,811 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for memory-profiler-0.61.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,811 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,812 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,820 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,822 easyblock.py:844 INFO Found file memory-profiler-0.61.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-30 12:24:58,887 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 5fe93d5035288095c4f86ef69ee19f37 -== 2023-01-30 12:24:58,888 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz: 4e5b73d7864a1d1292fb76a03e82a3e78ef934d06828a698d9dada76da2067b0 -== 2023-01-30 12:24:58,889 easyblock.py:685 INFO Checksum for extension source memory-profiler-0.61.0.tar.gz verified -== 2023-01-30 12:24:58,889 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:58,890 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.2.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-30 12:24:58,890 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-30 12:24:58,890 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-30 12:24:58,891 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-30 12:24:58,892 easyblock.py:844 INFO Found file 0.2.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-30 12:24:59,390 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: ed1e3a1e7b718dc7f72babd02939d635 -== 2023-01-30 12:24:59,891 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz: d2700e0f9c9bc2ee2a1d96a91f05448abd7c9ccd83208da42aaac53724f2f772 -== 2023-01-30 12:24:59,891 easyblock.py:685 INFO Checksum for extension source 0.2.0.tar.gz verified -== 2023-01-30 12:24:59,891 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-30 12:24:59,891 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib-pipeline', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/vis/scib-pipeline'] -== 2023-01-30 12:24:59,894 build_log.py:267 INFO ... (took 1 secs) -== 2023-01-30 12:24:59,897 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-30 12:24:59,900 easyblock.py:3877 INFO Starting ready step -== 2023-01-30 12:24:59,900 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:24:59,901 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:24:59,901 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:24:59,901 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:24:59,901 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-30 12:24:59,909 run.py:236 INFO running cmd: ulimit -u -== 2023-01-30 12:24:59,917 easyblock.py:2196 INFO Setting parallelism: 8 -== 2023-01-30 12:25:00,015 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-30 12:25:00,016 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-30 12:25:00,016 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:25:00,025 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-30 12:25:00,026 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-30 12:25:00,026 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:25:00,027 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:25:00,027 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:25:00,028 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:25:00,029 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:25:00,035 build_log.py:267 INFO unpacking... -== 2023-01-30 12:25:00,041 easyblock.py:3877 INFO Starting source step -== 2023-01-30 12:25:00,041 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:25:00,042 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:25:00,042 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:25:00,043 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:25:00,043 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-30 12:25:00,043 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-30 12:25:00,043 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:25:00,050 build_log.py:267 INFO patching... -== 2023-01-30 12:25:00,056 easyblock.py:3877 INFO Starting patch step -== 2023-01-30 12:25:00,056 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:25:00,057 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:25:00,057 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:25:00,057 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:25:00,058 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-30 12:25:00,058 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:25:00,064 build_log.py:267 INFO preparing... -== 2023-01-30 12:25:00,070 easyblock.py:3877 INFO Starting prepare step -== 2023-01-30 12:25:00,070 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:25:00,071 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:25:00,071 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:25:00,072 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:25:00,072 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-30 12:25:00,076 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:25:00,076 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-30 12:25:00,076 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-30 12:25:00,076 modules.py:628 INFO Checking whether PyTorch/1.12.0-foss-2022a exists... -== 2023-01-30 12:25:00,077 modules.py:633 INFO Module PyTorch/1.12.0-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,077 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-foss-2022a module: True -== 2023-01-30 12:25:00,077 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-30 12:25:00,077 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,077 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-30 12:25:00,078 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists... -== 2023-01-30 12:25:00,078 modules.py:633 INFO Module R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 exists (found in list of available modules) -== 2023-01-30 12:25:00,078 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 module: True -== 2023-01-30 12:25:00,078 modules.py:628 INFO Checking whether R/4.2.1-foss-2022a exists... -== 2023-01-30 12:25:00,079 modules.py:633 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,079 modules.py:656 INFO Result for existence check of R/4.2.1-foss-2022a module: True -== 2023-01-30 12:25:00,079 modules.py:628 INFO Checking whether scib/1.1.1-foss-2022a exists... -== 2023-01-30 12:25:00,079 modules.py:633 INFO Module scib/1.1.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,079 modules.py:656 INFO Result for existence check of scib/1.1.1-foss-2022a module: True -== 2023-01-30 12:25:00,080 modules.py:628 INFO Checking whether scikit-learn/1.1.2-foss-2022a exists... -== 2023-01-30 12:25:00,080 modules.py:633 INFO Module scikit-learn/1.1.2-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,080 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-foss-2022a module: True -== 2023-01-30 12:25:00,080 modules.py:628 INFO Checking whether scikit-misc/0.1.4-foss-2022a exists... -== 2023-01-30 12:25:00,081 modules.py:633 INFO Module scikit-misc/0.1.4-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,081 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-foss-2022a module: True -== 2023-01-30 12:25:00,081 modules.py:628 INFO Checking whether rpy2/3.5.7-foss-2022a exists... -== 2023-01-30 12:25:00,081 modules.py:633 INFO Module rpy2/3.5.7-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,082 modules.py:656 INFO Result for existence check of rpy2/3.5.7-foss-2022a module: True -== 2023-01-30 12:25:00,082 modules.py:628 INFO Checking whether snakemake/7.20.0-foss-2022a exists... -== 2023-01-30 12:25:00,082 modules.py:633 INFO Module snakemake/7.20.0-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,082 modules.py:656 INFO Result for existence check of snakemake/7.20.0-foss-2022a module: True -== 2023-01-30 12:25:00,082 modules.py:628 INFO Checking whether networkx/2.8.4-foss-2022a exists... -== 2023-01-30 12:25:00,083 modules.py:633 INFO Module networkx/2.8.4-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,083 modules.py:656 INFO Result for existence check of networkx/2.8.4-foss-2022a module: True -== 2023-01-30 12:25:00,083 modules.py:628 INFO Checking whether ICU/71.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:25:00,083 modules.py:633 INFO Module ICU/71.1-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-30 12:25:00,084 modules.py:656 INFO Result for existence check of ICU/71.1-GCCcore-11.3.0 module: True -== 2023-01-30 12:25:00,084 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:25:00,084 modules.py:633 INFO Module Graphviz/5.0.0-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-30 12:25:00,084 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCCcore-11.3.0 module: True -== 2023-01-30 12:25:00,084 modules.py:628 INFO Checking whether GSL/2.7-GCC-11.3.0 exists... -== 2023-01-30 12:25:00,085 modules.py:633 INFO Module GSL/2.7-GCC-11.3.0 exists (found in list of available modules) -== 2023-01-30 12:25:00,085 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-11.3.0 module: True -== 2023-01-30 12:25:00,085 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-30 12:25:00,085 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,085 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-30 12:25:00,086 modules.py:628 INFO Checking whether numba/0.56.4-foss-2022a exists... -== 2023-01-30 12:25:00,086 modules.py:633 INFO Module numba/0.56.4-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,086 modules.py:656 INFO Result for existence check of numba/0.56.4-foss-2022a module: True -== 2023-01-30 12:25:00,086 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-30 12:25:00,087 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,087 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-30 12:25:00,087 modules.py:628 INFO Checking whether h5py/3.7.0-foss-2022a exists... -== 2023-01-30 12:25:00,087 modules.py:633 INFO Module h5py/3.7.0-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,088 modules.py:656 INFO Result for existence check of h5py/3.7.0-foss-2022a module: True -== 2023-01-30 12:25:00,088 modules.py:628 INFO Checking whether leidenalg/0.9.1-foss-2022a exists... -== 2023-01-30 12:25:00,088 modules.py:633 INFO Module leidenalg/0.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,088 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-foss-2022a module: True -== 2023-01-30 12:25:00,088 modules.py:628 INFO Checking whether umap-learn/0.5.3-foss-2022a exists... -== 2023-01-30 12:25:00,089 modules.py:633 INFO Module umap-learn/0.5.3-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,089 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-foss-2022a module: True -== 2023-01-30 12:25:00,089 modules.py:628 INFO Checking whether pydot/1.4.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:25:00,089 modules.py:633 INFO Module pydot/1.4.2-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-30 12:25:00,090 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCCcore-11.3.0 module: True -== 2023-01-30 12:25:00,090 modules.py:628 INFO Checking whether igraph/0.10.3-foss-2022a exists... -== 2023-01-30 12:25:00,090 modules.py:633 INFO Module igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,090 modules.py:656 INFO Result for existence check of igraph/0.10.3-foss-2022a module: True -== 2023-01-30 12:25:00,091 modules.py:628 INFO Checking whether python-igraph/0.10.3-foss-2022a exists... -== 2023-01-30 12:25:00,091 modules.py:633 INFO Module python-igraph/0.10.3-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,091 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-foss-2022a module: True -== 2023-01-30 12:25:00,091 modules.py:628 INFO Checking whether Deprecated/1.2.13-foss-2022a exists... -== 2023-01-30 12:25:00,091 modules.py:633 INFO Module Deprecated/1.2.13-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,092 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-foss-2022a module: True -== 2023-01-30 12:25:00,092 modules.py:628 INFO Checking whether torchvision/0.13.1-foss-2022a exists... -== 2023-01-30 12:25:00,092 modules.py:633 INFO Module torchvision/0.13.1-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,092 modules.py:656 INFO Result for existence check of torchvision/0.13.1-foss-2022a module: True -== 2023-01-30 12:25:00,093 modules.py:628 INFO Checking whether trvaep/0.1.0-foss-2022a exists... -== 2023-01-30 12:25:00,093 modules.py:633 INFO Module trvaep/0.1.0-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,093 modules.py:656 INFO Result for existence check of trvaep/0.1.0-foss-2022a module: True -== 2023-01-30 12:25:00,093 modules.py:628 INFO Checking whether scvi-tools/0.19.0-foss-2022a exists... -== 2023-01-30 12:25:00,094 modules.py:633 INFO Module scvi-tools/0.19.0-foss-2022a exists (found in list of available modules) -== 2023-01-30 12:25:00,094 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-foss-2022a module: True -== 2023-01-30 12:25:00,094 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:25:00,095 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:25:02,492 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:25:08,655 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-30 12:25:12,571 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib') -== 2023-01-30 12:25:15,911 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-30 12:25:22,257 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: 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-== 2023-01-30 12:25:26,131 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-30 12:25:32,960 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib') -== 2023-01-30 12:25:46,529 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib') -== 2023-01-30 12:26:00,586 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/libxslt/1.1.34-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/ZeroMQ/4.3.4-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libsodium/1.0.18-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/OpenPGM/5.2.122-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qt5/5.15.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSS/3.79-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NSPR/4.34-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DBus/1.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/graphite2/1.3.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/DB/18.1.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgd/2.3.3-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GTS/0.7.6-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/arpack-ng/3.8.0-foss-2022a/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib64:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Blosc/1.21.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LZO/2.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/utf8proc/2.7.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/RE2/2022-06-01-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/snappy/1.1.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib/R/lib:/apps/gent/RHEL8/haswell-ib/software/libgit2/1.4.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/HDF/4.2.15-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libtirpc/1.3.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libgeotiff/1.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PROJ/9.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GEOS/3.10.3-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/netCDF/4.9.0-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/nodejs/16.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ImageMagick/7.1.0-37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LittleCMS/2.13.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/JasPer/2.0.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Ghostscript/9.56.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GTK2/2.24.33-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Pango/1.50.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HarfBuzz/4.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Gdk-Pixbuf/2.42.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ATK/2.38.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UDUNITS/2.2.28-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/Szip/2.1.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libsndfile/1.1.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libopus/1.3.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libvorbis/1.3.7-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FLAC/1.3.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libogg/1.3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/NLopt/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cURL/7.83.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE2/10.40-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/lib:/apps/gent/RHEL8/has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(previous value: '/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib') -== 2023-01-30 12:26:05,324 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/java:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Java/11.0.2/lib') -== 2023-01-30 12:26:09,832 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib') -== 2023-01-30 12:26:45,834 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib') -== 2023-01-30 12:27:10,153 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:27:10,154 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:27:10,154 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:27:10,156 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:27:10,159 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:27:10,177 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:27:10,184 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/include was not found -== 2023-01-30 12:27:10,185 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-30 12:27:10,188 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/include was not found -== 2023-01-30 12:27:10,188 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib64 was not found -== 2023-01-30 12:27:10,188 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1/lib was not found -== 2023-01-30 12:27:10,189 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/include was not found -== 2023-01-30 12:27:10,191 variables.py:203 WARNING flags_for_subdirs: directory 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/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/include was not found -== 2023-01-30 12:27:10,223 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-30 12:27:10,225 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/include was not found -== 2023-01-30 12:27:10,226 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-30 12:27:10,229 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/include was not found -== 2023-01-30 12:27:10,232 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/include was not found -== 2023-01-30 12:27:10,252 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/include was not found -== 2023-01-30 12:27:10,255 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/include was not found -== 2023-01-30 12:27:10,269 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/include was not found -== 2023-01-30 12:27:10,272 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/include was not found -== 2023-01-30 12:27:10,274 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/include was not found -== 2023-01-30 12:27:10,276 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/include was not found -== 2023-01-30 12:27:10,286 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,286 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,287 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,287 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,287 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,287 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,288 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,288 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,288 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,288 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,288 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,289 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,289 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,289 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,289 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,290 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,290 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,290 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,290 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,290 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,291 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,291 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,291 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,291 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,292 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-30 12:27:10,292 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-30 12:27:10,292 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,292 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,293 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,293 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,293 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-30 12:27:10,293 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-30 12:27:10,293 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,294 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,294 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,294 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,294 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,295 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,295 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,295 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,295 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-30 12:27:10,296 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-30 12:27:10,296 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,296 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,296 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,296 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,297 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,297 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,297 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,297 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,298 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:10,298 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:10,298 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,298 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,298 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:10,299 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:10,299 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,299 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,299 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,300 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,300 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,300 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,300 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:10,300 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:10,301 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,301 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,301 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:10,301 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:10,302 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,302 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,302 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:27:10,302 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:27:10,303 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,303 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:10,303 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,303 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,303 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,304 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,304 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,304 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,304 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,305 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,305 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,305 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,305 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,306 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:27:10,306 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,306 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,306 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,307 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,307 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:27:10,307 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:27:10,307 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:27:10,307 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:27:10,308 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,308 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,308 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,308 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,309 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,309 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,309 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,309 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,309 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:27:10,310 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:27:10,310 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,310 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:10,310 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:27:10,311 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:27:10,311 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:10,311 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:10,311 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:10,311 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:10,312 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-30 12:27:10,312 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-30 12:27:10,312 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:27:10,312 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:27:10,313 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:27:10,313 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:27:10,313 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:27:10,313 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:27:10,314 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-30 12:27:10,314 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-30 12:27:10,314 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,314 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:10,314 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:27:10,315 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:27:10,315 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:27:10,315 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:27:10,315 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:27:10,316 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:27:10,316 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:27:10,316 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:27:10,316 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:27:10,316 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:27:10,317 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,317 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,317 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,317 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:10,318 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:27:10,318 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:27:10,318 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:27:10,318 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:27:10,319 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,319 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:27:10,319 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:27:10,319 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:27:10,319 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:27:10,320 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:27:10,320 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,320 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:10,320 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,321 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:10,321 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,321 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:10,321 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,321 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:10,322 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/ as start dir -== 2023-01-30 12:27:10,327 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:27:10,327 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:27:15,810 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:27:16,773 build_log.py:267 INFO ... (took 2 mins 16 secs) -== 2023-01-30 12:27:16,780 build_log.py:267 INFO configuring... -== 2023-01-30 12:27:16,786 easyblock.py:3877 INFO Starting configure step -== 2023-01-30 12:27:16,786 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:16,787 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:16,788 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:16,788 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:16,788 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-30 12:27:16,789 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:27:16,795 build_log.py:267 INFO building... -== 2023-01-30 12:27:16,801 easyblock.py:3877 INFO Starting build step -== 2023-01-30 12:27:16,801 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:16,802 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:16,802 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:16,802 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:16,803 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-30 12:27:16,803 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:27:16,809 build_log.py:267 INFO testing... -== 2023-01-30 12:27:16,815 easyblock.py:3877 INFO Starting test step -== 2023-01-30 12:27:16,815 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:16,816 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:16,816 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:16,816 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:16,817 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-30 12:27:16,817 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:27:16,823 build_log.py:267 INFO installing... -== 2023-01-30 12:27:16,829 easyblock.py:3877 INFO Starting install step -== 2023-01-30 12:27:16,829 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:16,830 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:16,830 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:16,831 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:16,831 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-30 12:27:16,831 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-30 12:27:16,833 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-30 12:27:17,347 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a successfully removed. -== 2023-01-30 12:27:17,348 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a -== 2023-01-30 12:27:17,348 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:27:17,349 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-30 12:27:17,349 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:27:17,355 build_log.py:267 INFO taking care of extensions... -== 2023-01-30 12:27:17,361 easyblock.py:3877 INFO Starting extensions step -== 2023-01-30 12:27:17,361 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:17,362 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:17,362 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:17,363 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:17,363 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-30 12:27:17,364 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-30 12:27:17,364 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-30 12:27:19,041 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-30 12:27:19,043 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:27:19,044 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/scib-pipeline]==]) -whatis([==[URL: https://github.com/theislab/scib-pipeline]==]) -whatis([==[Extensions: anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, scgen-2.1.0, scib-pipeline-0.2.0, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a" - -conflict("scib-pipeline") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("PyTorch/1.12.0-foss-2022a") ) then - load("PyTorch/1.12.0-foss-2022a") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") ) then - load("R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1") -end - -if not ( isloaded("R/4.2.1-foss-2022a") ) then - load("R/4.2.1-foss-2022a") -end - -if not ( isloaded("scib/1.1.1-foss-2022a") ) then - load("scib/1.1.1-foss-2022a") -end - -if not ( isloaded("scikit-learn/1.1.2-foss-2022a") ) then - load("scikit-learn/1.1.2-foss-2022a") -end - -if not ( isloaded("scikit-misc/0.1.4-foss-2022a") ) then - load("scikit-misc/0.1.4-foss-2022a") -end - -if not ( isloaded("rpy2/3.5.7-foss-2022a") ) then - load("rpy2/3.5.7-foss-2022a") -end - -if not ( isloaded("snakemake/7.20.0-foss-2022a") ) then - load("snakemake/7.20.0-foss-2022a") -end - -if not ( isloaded("networkx/2.8.4-foss-2022a") ) then - load("networkx/2.8.4-foss-2022a") -end - -if not ( isloaded("ICU/71.1-GCCcore-11.3.0") ) then - load("ICU/71.1-GCCcore-11.3.0") -end - -if not ( isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTSCIBMINPIPELINE", "anndata-0.8.0,anndata2ri-1.1,get_version-3.5.4,trvaep-0.1.0,annoy-1.17.1,geosketch-1.2,fbpca-1.0,scgen-2.1.0,bbknn-1.5.1,scanorama-1.7.3,memory-profiler-0.61.0,scib-pipeline-0.2.0") - -== 2023-01-30 12:27:19,046 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/vis/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:27:19,046 easyblock.py:3724 INFO Skipping devel module... -== 2023-01-30 12:27:19,047 filetools.py:339 INFO Symlinked 0.2.0-foss-2022a.lua to /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline/default -== 2023-01-30 12:27:19,047 module_generator.py:1489 INFO Module default version file written to point to /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline/default -== 2023-01-30 12:27:24,289 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/438/vsc43810/.local/bin:1;/user/gent/438/vsc43810/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/438/vsc43810/.dotnet/tools:1 (previous value: 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-== 2023-01-30 12:27:24,292 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-30 12:27:24,293 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-30 12:27:24,293 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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-== 2023-01-30 12:27:24,322 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-30 12:27:37,634 easyblock.py:2838 INFO Installing extensions -== 2023-01-30 12:27:37,652 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:37,657 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:37,658 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:37,658 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:37,658 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:37,664 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:37,665 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:37,666 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:37,669 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:37,669 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:37,670 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:37,672 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:37,673 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:37,673 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:37,673 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:37,673 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:37,674 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:37,674 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:37,674 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:37,674 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:37,674 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:37,675 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:37,675 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:37,675 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:37,676 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:37,684 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:37,684 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:37,684 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:42,475 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:42,475 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,480 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:42,480 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:42,480 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,482 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:42,483 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,483 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,485 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,485 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,486 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,488 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,488 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,491 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,492 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,492 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,493 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,495 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:42,495 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,498 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:42,499 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,499 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,501 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,501 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,502 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,504 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,504 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,504 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,506 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,507 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,509 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:42,509 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,511 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:42,512 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:42,512 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,514 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:42,515 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,515 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,517 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,517 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,517 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,519 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,520 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,522 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:42,522 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,525 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:42,525 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:42,526 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,528 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:42,528 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:42,528 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,530 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:42,531 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:42,531 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,533 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:42,534 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,536 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:42,536 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,538 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:42,539 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,539 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,541 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,541 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,542 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,544 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,544 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,544 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,546 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,547 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,549 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:42,549 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,551 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:42,552 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,552 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,554 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,554 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,555 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,557 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,557 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,557 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,559 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,560 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,561 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,562 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,563 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,565 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:42,565 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,568 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:42,568 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:42,569 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,571 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:42,571 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,571 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,573 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,574 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,574 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,576 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,576 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,578 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:42,579 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,581 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:42,581 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,581 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,583 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,584 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,584 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,586 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,586 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,587 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,589 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,589 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,590 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,590 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,591 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,592 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,594 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:42,594 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,596 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:42,597 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:42,597 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,606 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:42,606 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,607 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,609 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,609 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,609 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,611 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,612 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,615 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,615 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,618 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:42,618 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,620 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:42,621 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,621 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,623 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,623 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,623 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,625 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,626 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,626 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,628 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,629 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,630 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,630 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,631 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,631 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,633 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:42,634 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,636 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:42,636 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,637 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,639 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,639 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,639 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,641 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,642 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,642 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,644 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,644 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,646 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:42,647 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,649 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:42,649 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:42,650 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,652 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:42,652 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,652 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,654 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,655 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,655 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,657 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,659 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,659 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,659 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,660 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,662 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:42,662 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,665 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:42,665 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:42,666 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,668 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:42,668 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,668 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,670 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,671 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,671 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,673 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,673 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,678 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,679 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,679 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,681 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:42,682 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,684 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:42,684 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:42,684 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,686 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:42,687 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:42,687 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,689 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:42,690 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,690 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,692 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,692 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,693 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,694 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:42,696 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:42,696 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,699 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:42,699 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,699 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,701 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,702 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,702 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,704 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,704 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,705 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,707 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,707 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,709 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:42,710 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,712 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:42,713 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,713 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,715 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,716 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,716 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,718 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,718 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,719 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,721 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,721 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,723 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:42,723 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,726 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:42,726 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,727 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,729 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,729 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,729 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,731 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,732 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,732 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,734 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,734 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,735 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,736 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,736 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,737 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,737 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,739 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:42,739 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,742 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:42,742 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,742 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,744 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,745 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,745 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,746 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,747 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,747 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,748 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,748 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,750 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:42,750 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,751 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:42,752 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,752 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,752 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,753 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,753 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,754 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,754 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,754 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,755 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,755 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,757 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:42,757 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,759 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:42,759 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:42,759 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,760 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:42,760 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,760 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,761 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,761 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,762 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,762 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,762 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,765 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:42,765 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,766 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:42,766 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:42,766 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,767 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:42,767 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:42,768 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,768 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:42,769 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,769 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,769 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,770 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,771 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,772 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,772 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,775 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:42,775 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,776 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:42,776 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:42,776 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,777 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:42,777 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,777 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,778 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,778 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,779 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,779 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,779 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,782 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:42,782 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,783 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:42,783 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:42,783 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,784 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:42,784 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,784 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,785 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,785 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,786 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,786 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,786 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,788 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:42,789 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,789 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:42,790 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:42,790 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,791 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:42,791 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,791 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,792 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,792 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,792 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,793 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,793 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,794 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,795 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,795 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,795 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,796 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,798 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:42,798 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,799 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:42,800 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,800 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,801 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,801 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,801 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,802 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,802 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,803 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,803 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,803 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,806 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:42,806 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,806 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:42,807 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,807 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,808 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,808 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,808 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,809 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,809 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,810 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,810 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,810 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,811 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,812 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,813 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,815 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:42,815 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,817 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:42,817 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,817 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,818 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,818 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,819 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,819 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,819 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,820 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,820 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,822 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,822 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,823 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,823 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,829 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata' -== 2023-01-30 12:27:42,829 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:42,830 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previously undefined) -== 2023-01-30 12:27:42,830 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:42,830 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:42,845 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:42,848 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:42,848 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:42,849 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:42,849 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:42,854 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:42,855 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:42,863 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:42,865 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:42,865 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:42,866 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:42,867 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:42,868 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:42,868 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:42,869 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:42,869 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:42,869 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:42,869 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:42,870 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:42,870 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:42,870 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:42,870 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:42,870 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:42,871 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:42,872 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:42,876 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:42,876 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:42,877 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:42,880 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:42,880 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,881 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:42,881 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:42,881 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,882 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:42,882 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,883 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,883 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,884 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,884 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,884 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,885 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,886 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,886 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,886 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,888 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:42,889 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,890 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:42,890 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,890 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,891 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,891 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,891 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,892 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,892 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,893 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,893 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,893 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,895 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:42,896 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,896 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:42,897 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:42,897 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,898 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:42,898 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,898 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,899 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,899 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,899 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,900 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,900 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,902 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:42,903 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,903 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:42,904 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:42,904 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,904 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:42,905 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:42,905 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,905 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:42,906 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:42,906 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,907 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:42,907 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,909 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:42,909 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,910 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:42,910 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,910 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,911 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,911 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,912 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,912 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,913 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,913 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,913 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,914 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,916 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:42,916 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,917 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:42,917 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,917 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,918 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,918 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,918 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,919 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,919 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,919 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,920 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,920 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,921 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,922 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,922 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,924 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:42,924 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,925 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:42,925 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:42,926 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,926 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:42,927 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,927 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,927 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,928 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,928 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,929 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,929 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,931 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:42,931 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,932 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:42,932 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,933 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,933 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,934 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,934 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,934 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,935 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,935 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,935 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,936 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,936 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,937 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,937 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,937 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,938 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,940 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:42,940 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,941 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:42,941 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:42,941 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,942 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:42,942 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,942 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,943 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,943 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,944 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,944 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,945 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,945 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,946 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,946 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,946 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,948 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:42,949 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,949 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:42,950 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,950 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,950 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,951 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,951 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,952 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,952 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,952 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,953 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,953 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,953 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,954 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,954 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,955 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,957 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:42,957 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,958 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:42,958 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,959 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,959 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,959 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,960 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,960 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,961 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,961 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,961 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,962 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,964 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:42,964 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,965 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:42,965 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:42,965 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,966 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:42,966 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,966 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,967 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,967 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,967 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,968 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,968 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,969 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,969 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,970 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,970 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,972 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:42,972 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,973 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:42,973 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:42,973 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,974 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:42,974 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:42,975 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,975 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:42,976 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,976 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,976 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,977 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,978 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,978 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:42,980 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:42,981 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,981 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:42,982 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:42,982 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,982 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:42,983 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:42,983 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,983 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:42,984 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,984 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,985 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,985 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,985 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,986 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:42,986 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:42,988 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:42,988 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,989 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:42,989 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:42,990 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,990 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:42,991 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,991 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,991 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,992 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,992 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,993 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:42,993 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:42,995 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:42,995 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,996 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:42,996 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:42,996 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,997 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:42,997 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:42,998 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,998 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:42,999 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:42,999 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:42,999 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,000 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,002 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,002 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,003 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,003 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,003 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,004 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,004 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,004 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,005 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,005 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,006 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,006 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,007 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,007 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,008 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,008 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,008 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,010 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,011 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,011 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,012 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,012 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,012 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,013 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,013 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,014 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,014 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,014 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,014 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,015 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,016 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,016 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,016 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,016 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,016 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,017 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,017 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,017 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,017 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,018 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,018 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,018 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,018 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,019 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,019 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,020 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,020 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,020 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,020 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,021 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,021 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,021 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,021 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,021 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,022 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,022 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,023 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,023 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,023 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,023 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,023 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,024 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,024 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,024 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,024 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,025 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,025 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,025 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,025 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,025 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,026 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,027 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,027 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,028 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,028 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,028 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,028 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,029 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,029 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,029 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,029 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,029 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,030 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,030 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,031 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,031 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,031 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,032 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,032 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,032 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,032 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,032 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,033 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,033 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,033 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,033 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,033 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,034 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,035 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,035 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,035 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,035 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,035 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,036 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,036 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,036 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,036 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,036 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,037 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,037 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,038 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,038 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,039 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,039 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,039 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,039 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,040 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,040 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,040 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,040 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,041 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,041 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,041 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,041 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,041 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,042 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,042 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,043 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,043 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,043 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,043 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,044 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,044 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,044 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,044 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,044 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,045 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,046 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,047 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,047 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,047 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,047 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,048 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,048 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,048 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,048 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,048 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,049 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,049 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,049 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,050 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,053 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'anndata2ri' -== 2023-01-30 12:27:43,053 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,053 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,053 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,053 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,055 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,056 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,056 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,056 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,056 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,058 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,058 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,058 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,059 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,059 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,060 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,061 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,061 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,061 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,061 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,061 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,062 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,063 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,064 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,064 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,065 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,066 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,066 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,067 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,067 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,067 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,067 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,067 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,067 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,068 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,068 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,068 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,068 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,069 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,070 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,070 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,071 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,071 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,071 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,071 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,072 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,072 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,072 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,072 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,072 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,073 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,073 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,074 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,074 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,074 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,074 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,074 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,075 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,075 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,075 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,075 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,076 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,076 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,076 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,076 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,077 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,077 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,078 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,078 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,078 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,078 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,078 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,079 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,079 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,079 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,079 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,079 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,080 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,081 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,081 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,081 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,081 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,081 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,082 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,082 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,082 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,082 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,082 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,083 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,083 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,083 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,084 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,084 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,084 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,085 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,085 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,085 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,085 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,085 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,086 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,086 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,086 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,086 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,086 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,086 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,087 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,088 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,088 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,089 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,089 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,089 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,089 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,089 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,090 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,090 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,090 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,090 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,090 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,090 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,092 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,092 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,092 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,092 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,092 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,093 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,093 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,093 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,093 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,093 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,093 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,094 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,094 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,095 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,095 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,096 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,096 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,096 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,096 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,096 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,097 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,097 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,097 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,097 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,098 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,098 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,098 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,098 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,098 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,098 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,099 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,099 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,099 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,100 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,100 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,100 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,101 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,101 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,101 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,101 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,101 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,102 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,102 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,102 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,102 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,102 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,102 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,103 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,103 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,103 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,103 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,104 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,104 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,105 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,105 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,105 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,105 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,105 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,106 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,106 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,106 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,106 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,106 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,107 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,107 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,108 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,108 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,108 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,108 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,108 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,109 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,109 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,109 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,109 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,109 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,110 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,110 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,110 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,111 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,112 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,112 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,112 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,112 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,120 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,120 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,120 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,120 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,120 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,120 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,121 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,121 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,122 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,123 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,123 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,123 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,123 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,123 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,124 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,124 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,124 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,124 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,124 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,125 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,125 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,125 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,126 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,127 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,127 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,127 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,127 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,127 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,128 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,128 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,128 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,128 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,128 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,128 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,129 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,129 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,130 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,130 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,130 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,130 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,131 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,131 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,131 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,131 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,131 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,132 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,132 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,132 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,132 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,133 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,133 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,133 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,134 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,134 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,134 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,134 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,134 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,135 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,135 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,135 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,135 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,135 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,136 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,136 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,136 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,136 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,136 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,137 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,137 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,138 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,138 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,138 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,138 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,138 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,139 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,139 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,139 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,139 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,140 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,140 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,141 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,141 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,141 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,142 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,142 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,142 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,142 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,142 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,143 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,143 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,143 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,143 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,143 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,144 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,144 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,145 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,145 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,145 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,145 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,146 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,146 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,146 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,146 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,146 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,146 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,147 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,148 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,148 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,148 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,148 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,148 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,149 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,149 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,149 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,149 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,149 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,149 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,150 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,150 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,151 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,151 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,151 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,152 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,152 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,152 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,153 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,153 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,153 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,153 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,153 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,154 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,154 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,154 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,154 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,154 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,155 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,156 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,156 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,156 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,156 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,156 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,157 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,157 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,157 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,157 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,157 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,158 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,158 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,159 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,159 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,159 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,159 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,159 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,160 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,160 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,160 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,160 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,161 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,161 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,161 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,161 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,161 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,161 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,162 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,162 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,163 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,163 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,163 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,164 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,164 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,164 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,164 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,164 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,165 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,165 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,165 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,165 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,165 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,166 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,167 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,167 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,167 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,167 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,167 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,168 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,168 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,168 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,168 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,168 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,169 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,169 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,169 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,169 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,169 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,170 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,170 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,171 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,171 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,171 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,171 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,171 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,172 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,172 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,172 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,172 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,173 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,173 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,173 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,174 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,174 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,174 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,177 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'get_version' -== 2023-01-30 12:27:43,177 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,177 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,177 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,177 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,179 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,180 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,180 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,180 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,180 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,182 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,182 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,182 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,183 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,183 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,184 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,184 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,185 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,185 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,185 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,185 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,186 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,187 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,188 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,188 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,189 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,190 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,190 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,191 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,191 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,191 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,191 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,191 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,191 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,192 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,192 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,192 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,192 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,193 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,193 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,193 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,193 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,193 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,194 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,195 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,195 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,195 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,195 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,195 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,196 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,196 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,196 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,196 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,196 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,197 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,197 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,198 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,198 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,198 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,198 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,199 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,199 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,199 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,199 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,199 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,200 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,200 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,200 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,200 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,201 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,201 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,202 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,202 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,202 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,202 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,203 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,203 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,203 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,203 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,203 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,204 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,204 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,205 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,205 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,205 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,205 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,205 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,206 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,206 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,206 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,206 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,207 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,207 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,207 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,207 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,208 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,208 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,209 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,209 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,209 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,209 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,209 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,210 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,210 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,210 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,210 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,210 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,211 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,211 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,211 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,211 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,211 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,211 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,213 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,213 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,213 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,213 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,213 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,214 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,214 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,214 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,214 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,214 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,215 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,215 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,215 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,216 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,216 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,217 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,217 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,217 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,217 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,217 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,217 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,218 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,218 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,218 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,218 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,218 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,219 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,220 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,221 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,221 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,221 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,221 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,222 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,222 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,222 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,222 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,222 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,222 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,223 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,223 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,224 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,224 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,225 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,225 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,225 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,226 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,226 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,226 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,226 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,226 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,227 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,227 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,227 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,227 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,227 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,228 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,228 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,228 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,228 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,228 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,229 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,230 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,230 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,230 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,230 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,230 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,231 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,231 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,231 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,231 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,231 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,232 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,232 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,233 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,233 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,233 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,234 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,234 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,234 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,234 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,234 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,235 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,235 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,235 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,235 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,235 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,236 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,236 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,236 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,236 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,237 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,237 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,238 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,238 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,238 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,238 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,238 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,239 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,239 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,239 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,239 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,239 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,240 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,240 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,240 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,240 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,240 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,241 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,242 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,242 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,242 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,242 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,243 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,243 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,243 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,243 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,243 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,244 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,244 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,244 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,244 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,244 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,245 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,246 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,246 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,246 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,246 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,246 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,247 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,247 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,247 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,247 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,247 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,248 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,248 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,248 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,249 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,249 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,250 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,250 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,250 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,250 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,250 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,250 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,251 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,251 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,251 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,251 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,252 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,253 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,253 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,253 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,253 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,253 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,254 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,254 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,254 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,254 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,255 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,255 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,255 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,255 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,255 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,255 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,256 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,256 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,256 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,257 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,257 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,258 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,258 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,258 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,258 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,258 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,258 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,259 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,259 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,259 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,259 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,260 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,261 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,261 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,261 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,261 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,261 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,262 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,262 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,262 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,262 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,262 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,263 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,263 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,263 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,264 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,265 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,265 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,265 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,265 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,265 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,266 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,266 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,266 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,266 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,266 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,267 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,267 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,268 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,268 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,268 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,268 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,268 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,269 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,269 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,269 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,269 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,270 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,270 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,270 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,270 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,270 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,271 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,271 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,272 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,272 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,273 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,273 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,273 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,273 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,273 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,273 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,274 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,274 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,274 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,274 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,274 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,275 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,276 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,276 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,276 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,276 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,277 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,277 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,277 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,277 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,277 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,277 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,278 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,278 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,279 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,279 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,279 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,279 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,280 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,280 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,280 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,280 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,280 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,281 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,281 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,281 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,281 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,281 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,282 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,282 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,282 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,282 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,283 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,283 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,284 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,284 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,284 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,284 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,284 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,284 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,285 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,285 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,285 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,285 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,285 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,286 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,287 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,287 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,287 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,287 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,288 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,288 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,288 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,288 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,288 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,288 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,289 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,289 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,289 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,289 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,289 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,290 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,290 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,291 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,291 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,291 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,291 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,291 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,292 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,292 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,292 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,292 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,293 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,293 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,293 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,293 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,294 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,294 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,294 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,296 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-30 12:27:43,297 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,297 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,297 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,297 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,299 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,300 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,300 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,300 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,300 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,301 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,302 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,302 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,303 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,303 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,304 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,304 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,305 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,306 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,307 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,308 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,308 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,308 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,310 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,310 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,310 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,311 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,311 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,311 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,311 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,311 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,312 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,312 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,312 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,312 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,312 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,313 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,313 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,313 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,313 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,314 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,314 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,315 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,315 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,315 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,315 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,315 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,315 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,316 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,316 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,316 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,316 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,316 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,317 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,318 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,318 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,318 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,318 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,318 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,319 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,319 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,319 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,319 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,319 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,320 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,320 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,321 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,321 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,321 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,321 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,321 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,322 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,322 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,322 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,322 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,322 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,323 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,323 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,323 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,324 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,324 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,324 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,325 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,325 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,325 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,325 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,325 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,326 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,326 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,326 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,326 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,326 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,327 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,327 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,328 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,328 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,328 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,328 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,328 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,329 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,329 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,329 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,329 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,329 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,329 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,330 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,330 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,331 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,332 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,332 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,332 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,332 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,332 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,333 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,333 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,333 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,333 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,333 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,334 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,334 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,335 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,335 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,335 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,335 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,335 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,336 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,336 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,336 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,336 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,336 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,337 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,337 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,337 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,337 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,337 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,337 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,338 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,338 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,339 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,339 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,339 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,339 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,340 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,340 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,340 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,340 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,340 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,341 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,341 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,341 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,341 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,341 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,341 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,342 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,342 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,342 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,343 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,343 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,343 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,344 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,344 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,344 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,344 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,344 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,345 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,345 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,345 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,345 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,345 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,346 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,346 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,347 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,347 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,348 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,348 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,348 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,348 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,348 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,348 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,349 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,349 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,349 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,349 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,349 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,350 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,350 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,351 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,351 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,351 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,351 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,352 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,352 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,352 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,352 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,352 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,352 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,353 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,353 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,354 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,354 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,355 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,355 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,355 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,355 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,355 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,356 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,356 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,356 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,356 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,356 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,357 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,357 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,357 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,357 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,357 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,358 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,358 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,359 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,359 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,359 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,359 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,359 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,360 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,360 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,360 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,360 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,360 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,361 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,361 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,362 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,362 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,362 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,363 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,363 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,363 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,363 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,363 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,364 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,364 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,364 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,364 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,364 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,365 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,365 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,366 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,366 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,366 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,366 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,367 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,367 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,367 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,367 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,367 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,367 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,368 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,369 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,369 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,369 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,369 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,369 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,370 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,377 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,377 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,377 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,377 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,377 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,378 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,378 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,379 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,380 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,380 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,380 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,380 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,380 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,381 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,381 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,381 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,381 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,381 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,382 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,382 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,382 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,383 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,383 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,383 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,384 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,384 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,384 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,384 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,384 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,384 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,385 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,385 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,385 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,385 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,386 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,386 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,387 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,387 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,387 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,387 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,387 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,387 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,388 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,388 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,388 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,388 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,388 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,390 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,390 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,390 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,390 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,390 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,391 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,391 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,391 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,391 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,392 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,392 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,392 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,392 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,393 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,393 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,394 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,394 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,395 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,395 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,395 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,395 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,395 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,395 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,396 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,396 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,396 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,396 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,396 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,397 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,398 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,398 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,398 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,398 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,399 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,399 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,399 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,399 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,399 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,399 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,400 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,400 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,401 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,401 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,401 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,401 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,402 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,402 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,402 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,402 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,402 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,403 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,403 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,403 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,403 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,403 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,404 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,404 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,405 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,405 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,406 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,406 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,406 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,406 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,406 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,407 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,407 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,407 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,407 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,407 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,408 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,409 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,409 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,409 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,409 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,409 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,410 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,410 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,410 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,410 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,410 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,411 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,411 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,411 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,412 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,412 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,413 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,413 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,413 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,414 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,414 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,414 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,414 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,414 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,415 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,415 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,415 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,415 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,415 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,415 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,416 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,416 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,416 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,416 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,419 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'annoy' -== 2023-01-30 12:27:43,419 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,419 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,419 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,419 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,421 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,422 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,422 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,422 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,422 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,424 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,424 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,425 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,425 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,426 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,426 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,427 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,427 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,427 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,427 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,427 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,428 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,429 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,430 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,431 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,431 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,432 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,432 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,433 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,433 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,433 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,433 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,433 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,434 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,434 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,434 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,434 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,434 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,435 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,435 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,436 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,437 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,437 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,437 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,437 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,437 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,438 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,438 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,438 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,438 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,438 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,439 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,439 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,440 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,440 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,440 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,440 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,441 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,441 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,441 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,441 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,441 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,442 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,442 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,442 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,442 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,443 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,443 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,444 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,444 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,444 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,444 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,444 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,445 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,445 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,445 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,445 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,445 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,446 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,447 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,447 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,447 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,447 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,447 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,448 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,448 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,448 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,448 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,448 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,449 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,449 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,449 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,450 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,450 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,450 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,451 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,451 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,451 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,451 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,451 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,452 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,452 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,452 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,452 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,452 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,453 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,453 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,454 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,455 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,455 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,455 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,455 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,455 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,456 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,456 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,456 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,456 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,456 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,457 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,457 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,458 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,458 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,458 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,458 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,459 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,459 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,459 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,459 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,459 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,460 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,460 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,460 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,460 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,461 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,461 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,461 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,461 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,462 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,462 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,463 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,463 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,463 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,463 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,463 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,463 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,464 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,464 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,464 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,464 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,465 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,465 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,467 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,467 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,467 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,467 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,467 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,468 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,468 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,468 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,468 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,468 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,468 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,469 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,469 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,470 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,470 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,471 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,471 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,471 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,472 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,472 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,472 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,472 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,472 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,473 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,473 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,473 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,473 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,473 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,474 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,474 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,475 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,475 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,475 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,475 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,476 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,476 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,476 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,476 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,476 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,477 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,477 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,478 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,479 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,479 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,479 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,479 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,479 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,480 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,480 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,480 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,480 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,480 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,481 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,481 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,481 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,482 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,482 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,483 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,483 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,483 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,483 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,484 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,484 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,484 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,484 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,484 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,485 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,485 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,485 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,485 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,485 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,486 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,486 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,487 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,487 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,487 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,488 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,488 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,488 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,488 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,488 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,489 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,489 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,489 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,489 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,489 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,490 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,491 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,491 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,491 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,491 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,492 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,492 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,492 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,492 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,492 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,492 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,493 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,493 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,494 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,494 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,494 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,495 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,495 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,495 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,495 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,495 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,496 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,496 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,496 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,496 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,496 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,497 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,497 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,497 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,497 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,497 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,498 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,499 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,499 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,499 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,499 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,499 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,500 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,500 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,500 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,500 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,500 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,501 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,501 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,502 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,502 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,502 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,503 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,503 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,503 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,503 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,503 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,504 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,504 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,504 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,504 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,504 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,505 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,506 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,506 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,506 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,506 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,506 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,507 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,507 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,507 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,507 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,507 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,508 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,508 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,509 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,509 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,509 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,509 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,510 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,510 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,510 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,510 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,511 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,511 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,511 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,511 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,511 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,512 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,512 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,513 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,514 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,514 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,514 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,514 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,515 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,515 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,515 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,515 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,516 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,516 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,516 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,516 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,517 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,517 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,517 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,518 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,518 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,518 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,518 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,518 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,519 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,519 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,519 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,519 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,519 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,520 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,521 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,521 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,521 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,521 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,521 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,522 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,522 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,522 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,522 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,522 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,523 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,523 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,524 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,525 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,525 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,525 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,525 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,525 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,526 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,526 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,526 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,526 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,527 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,527 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,527 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,527 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,528 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,528 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,528 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,529 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,529 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,529 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,529 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,529 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,530 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,530 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,530 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,530 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,530 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,531 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,531 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,532 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,532 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,533 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,533 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,533 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,533 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,534 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,534 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,534 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,534 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,534 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,535 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,535 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,536 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,538 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'geosketch' -== 2023-01-30 12:27:43,538 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,538 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,538 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,539 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,540 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,541 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,541 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,542 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,542 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,543 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,543 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,544 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,545 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,545 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,545 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,546 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,547 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,547 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,547 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,547 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,547 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,548 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,549 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,550 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,550 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,551 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,552 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,552 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,552 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,553 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,553 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,553 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,553 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,553 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,554 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,554 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,554 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,554 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,554 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,555 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,555 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,556 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,556 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,557 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,557 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,557 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,557 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,557 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,558 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,558 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,558 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,558 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,558 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,559 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,560 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,560 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,560 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,560 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,560 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,561 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,561 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,561 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,561 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,561 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,561 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,562 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,562 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,563 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,563 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,563 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,563 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,564 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,564 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,564 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,564 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,564 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,565 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,565 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,565 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,565 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,566 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,566 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,567 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,567 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,567 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,567 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,567 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,567 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,568 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,568 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,568 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,568 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,568 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,569 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,570 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,570 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,570 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,570 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,570 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,571 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,571 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,571 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,571 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,571 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,572 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,572 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,573 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,574 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,574 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,574 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,574 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,574 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,575 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,575 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,575 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,575 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,575 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,576 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,576 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,576 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,577 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,577 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,577 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,578 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,578 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,578 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,578 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,578 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,579 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,579 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,579 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,579 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,579 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,580 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,580 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,581 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,581 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,582 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,582 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,582 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,582 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,582 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,582 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,583 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,583 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,583 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,583 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,583 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,584 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,584 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,584 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,584 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,584 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,585 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,586 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,586 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,586 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,586 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,586 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,587 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,587 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,587 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,587 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,587 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,588 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,588 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,588 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,588 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,588 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,588 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,589 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,590 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,590 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,590 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,590 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,590 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,591 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,591 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,591 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,591 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,591 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,591 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,592 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,592 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,593 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,593 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,593 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,593 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,594 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,594 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,594 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,594 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,594 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,595 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,595 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,595 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,595 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,596 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,596 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,597 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,597 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,597 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,597 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,598 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,598 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,598 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,598 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,598 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,599 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,599 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,599 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,599 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,600 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,600 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,601 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,601 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,601 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,601 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,602 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,602 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,602 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,602 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,602 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,603 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,603 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,603 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,603 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,603 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,603 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,604 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,605 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,605 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,605 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,605 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,605 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,606 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,606 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,606 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,606 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,606 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,606 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,607 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,607 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,608 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,608 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,608 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,608 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,609 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,609 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,609 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,609 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,609 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,610 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,610 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,610 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,610 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,611 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,611 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,612 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,612 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,612 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,612 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,612 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,612 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,613 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,613 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,613 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,613 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,613 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,614 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,614 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,615 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,615 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,616 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,616 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,616 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,616 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,616 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,617 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,617 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,617 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,617 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,617 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,618 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,619 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,619 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,619 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,619 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,619 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,620 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,620 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,620 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,620 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,620 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,620 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,621 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,621 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,622 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,622 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,622 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,622 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,623 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,623 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,623 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,623 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,623 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,624 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,624 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,624 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,624 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,625 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,625 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,625 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,626 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,626 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,626 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,626 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,626 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,627 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,627 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,633 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,634 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,634 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,635 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,635 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,635 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,636 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,636 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,636 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,637 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,637 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,637 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,637 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,637 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,638 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,638 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,638 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,638 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,638 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,640 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,640 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,640 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,640 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,640 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,641 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,641 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,641 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,641 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,641 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,642 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,642 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,642 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,643 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,643 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,643 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,644 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,644 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,644 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,644 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,644 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,645 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,645 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,645 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,645 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,645 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,645 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,646 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,646 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,646 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,646 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,647 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,647 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,648 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,648 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,648 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,648 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,648 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,649 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,649 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,649 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,649 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,649 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,650 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,651 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,651 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,651 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,651 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,651 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,652 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,652 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,652 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,652 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,652 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,653 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,653 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,653 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,653 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,653 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,654 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,654 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,655 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,655 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,655 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,656 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,656 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,656 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,656 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,656 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,657 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,657 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,657 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,657 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,657 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,658 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,658 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,658 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,658 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,661 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'fbpca' -== 2023-01-30 12:27:43,661 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,661 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,661 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,661 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,663 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,664 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,664 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,664 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,664 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,666 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,666 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,666 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,667 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,668 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,668 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,669 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,669 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,669 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,669 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,669 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,670 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,671 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,672 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,672 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,673 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,674 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,674 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,675 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,675 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,675 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,675 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,675 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,676 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,676 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,676 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,676 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,676 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,677 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,677 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,678 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,679 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,679 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,679 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,679 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,679 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,680 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,680 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,680 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,680 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,680 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,681 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,681 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,682 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,682 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,682 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,682 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,683 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,683 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,683 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,683 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,683 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,684 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,684 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,684 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,684 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,685 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,685 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,686 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,686 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,686 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,686 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,686 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,687 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,687 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,687 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,687 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,687 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,688 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,689 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,689 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,689 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,689 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,689 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,690 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,690 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,690 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,690 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,690 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,690 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,691 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,691 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,692 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,692 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,692 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,693 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,693 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,693 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,693 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,693 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,694 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,694 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,694 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,694 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,694 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,695 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,695 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,695 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,695 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,696 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,696 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,697 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,697 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,697 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,697 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,698 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,698 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,698 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,698 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,698 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,699 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,699 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,700 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,700 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,700 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,700 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,700 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,701 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,701 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,701 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,702 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,702 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,702 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,702 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,702 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,702 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,703 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,703 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,704 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,704 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,705 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,705 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,705 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,705 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,706 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,706 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,706 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,706 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,706 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,707 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,707 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,707 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,707 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,707 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,707 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,708 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,709 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,709 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,709 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,709 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,709 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,710 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,710 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,710 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,710 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,710 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,711 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,711 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,711 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,711 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,711 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,712 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,712 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,713 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,713 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,713 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,714 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,714 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,714 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,714 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,714 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,715 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,715 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,715 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,715 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,715 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,716 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,717 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,717 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,717 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,717 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,717 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,718 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,718 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,718 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,718 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,718 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,719 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,719 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,719 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,719 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,719 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,720 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,721 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,721 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,721 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,721 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,721 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,722 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,722 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,722 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,722 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,722 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,723 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,723 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,723 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,724 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,724 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,725 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,725 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,725 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,725 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,726 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,726 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,726 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,726 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,726 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,727 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,727 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,727 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,727 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,727 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,728 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,728 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,729 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,729 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,729 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,730 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,730 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,730 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,730 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,730 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,731 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,731 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,731 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,731 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,731 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,732 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,733 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,733 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,733 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,733 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,733 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,734 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,734 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,734 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,734 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,734 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,735 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,735 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,736 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,736 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,736 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,737 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,737 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,737 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,737 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,737 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,738 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,738 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,738 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,738 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,738 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,739 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,739 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,739 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,739 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,739 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,740 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,741 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,741 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,741 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,741 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,741 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,742 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,742 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,742 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,742 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,742 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,743 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,743 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,744 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,744 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,744 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,745 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,745 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,745 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,745 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,745 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,746 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,746 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,746 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,746 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,746 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,747 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,748 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,748 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,748 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,748 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,748 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,749 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,749 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,749 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,749 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,749 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,750 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,750 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,751 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,751 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,751 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,752 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,752 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,752 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,752 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,752 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,753 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,753 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,753 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,753 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,753 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,754 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,754 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,754 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,754 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,754 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,755 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,756 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,756 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,756 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,756 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,757 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,757 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,757 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,757 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,757 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,757 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,758 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,758 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,759 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,759 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,759 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,760 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,760 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,760 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,760 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,760 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,761 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,761 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,761 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,761 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,761 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,762 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,763 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,763 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,763 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,763 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,763 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,764 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,764 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,764 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,765 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,765 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,765 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,765 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,765 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,765 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,766 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,766 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,767 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,767 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,767 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,768 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,768 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,768 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,768 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,768 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,769 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,769 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,769 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,769 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,769 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,770 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,771 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,771 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,771 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,771 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,771 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,772 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,772 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,772 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,772 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,772 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,773 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,773 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,774 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,774 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,775 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,775 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,775 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,775 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,776 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,776 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,776 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,776 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,776 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,777 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,777 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,777 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,777 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,777 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,778 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,778 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,780 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scgen' -== 2023-01-30 12:27:43,781 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,781 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,781 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,781 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,783 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,784 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,784 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,784 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,784 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,785 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,786 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,786 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,787 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,787 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,788 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,788 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,789 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,790 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,790 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,790 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,790 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,791 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,792 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,792 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,792 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,794 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,794 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,794 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,794 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,794 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,795 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,795 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,795 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,795 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,795 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,796 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,796 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,796 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,797 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,797 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,798 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,798 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,798 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,798 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,799 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,799 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,799 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,799 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,799 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,800 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,800 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,800 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,800 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,801 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,801 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,802 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,802 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,802 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,802 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,802 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,802 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,803 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,803 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,803 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,803 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,803 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,804 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,805 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,805 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,805 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,805 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,805 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,806 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,806 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,806 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,806 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,806 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,807 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,807 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,808 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,808 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,808 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,808 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,808 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,809 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,809 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,809 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,809 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,809 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,809 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,810 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,810 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,811 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,811 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,811 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,811 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,812 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,812 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,812 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,812 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,812 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,813 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,813 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,813 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,813 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,814 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,814 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,814 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,814 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,815 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,815 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,815 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,816 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,816 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,816 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,816 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,816 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,817 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,817 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,817 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,817 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,817 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,818 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,818 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,819 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,819 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,819 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,819 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,819 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,820 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,820 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,820 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,820 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,820 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,821 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,821 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,822 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,823 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,823 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,823 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,823 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,823 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,824 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,824 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,824 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,824 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,824 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,825 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,825 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,826 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,827 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,827 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,827 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,827 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,827 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,828 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,828 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,828 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,828 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,828 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,828 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,829 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,829 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,830 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,830 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,831 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,831 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,831 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,831 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,831 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,832 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,832 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,832 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,832 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,832 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,833 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,833 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,833 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,834 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,834 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,834 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,835 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,835 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,835 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,835 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,835 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,835 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,836 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,836 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,836 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,836 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,836 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,837 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,837 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,838 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,838 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,838 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,838 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,839 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,839 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,839 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,839 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,839 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,840 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,840 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,840 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,840 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,840 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,841 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,841 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,842 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,842 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,842 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,842 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,843 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,843 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,843 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,843 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,843 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,844 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,844 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,844 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,844 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,845 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,846 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,846 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,846 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,846 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,846 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,847 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,847 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,847 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,847 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,847 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,847 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,848 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,848 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,849 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,849 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,849 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,849 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,850 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,850 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,850 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,850 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,850 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,851 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,851 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,851 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,851 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,852 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,852 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,852 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,853 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,853 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,853 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,853 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,853 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,854 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,854 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,854 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,854 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,854 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,855 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,855 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,855 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,855 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,855 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,856 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,856 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,857 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,857 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,857 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,857 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,857 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,857 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,858 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,858 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,858 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,858 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,858 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,859 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,860 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,860 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,860 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,860 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,860 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,861 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,861 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,861 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,861 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,861 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,861 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,862 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,863 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,863 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,863 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,863 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,863 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,864 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,864 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,864 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,864 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,864 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,864 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,865 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,865 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,866 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,866 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,866 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,866 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,866 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,867 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,867 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,867 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,867 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,867 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,868 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,868 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,868 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,868 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,868 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,869 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,869 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,870 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,870 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,870 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,870 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,871 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,871 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,871 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,871 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,871 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,872 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,872 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,872 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,872 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,873 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,873 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,873 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,874 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,874 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,874 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,874 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,874 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,875 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,875 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,875 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,875 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,875 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,876 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,876 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,877 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,877 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,877 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,877 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,877 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,878 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,878 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,878 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,878 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,878 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,878 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,879 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,879 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,879 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,879 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,879 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,880 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:43,880 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,881 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:43,881 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,881 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,881 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,881 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,882 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,882 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,882 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,882 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,882 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,883 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,884 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:43,884 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,891 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:43,891 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,891 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,892 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,892 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,892 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,892 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,892 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,892 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,893 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,893 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,894 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,894 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,895 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:43,895 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,895 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:43,895 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,896 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,896 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,896 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,896 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,896 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,897 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,897 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,897 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,897 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,898 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,898 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,898 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,900 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'bbknn' -== 2023-01-30 12:27:43,901 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:43,901 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:43,901 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:43,901 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:43,902 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:43,904 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:43,904 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:43,904 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:43,904 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:43,905 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:43,906 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:43,906 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:43,907 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:43,907 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:43,907 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:43,908 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:43,908 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:43,909 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:43,910 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:43,910 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:43,912 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:43,912 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:43,912 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:43,913 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:43,914 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,914 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:43,914 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:43,914 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,914 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:43,915 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,915 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,915 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,915 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,915 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,916 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,916 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,916 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,916 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,916 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,917 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,918 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:43,918 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,918 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:43,918 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,918 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,918 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,919 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,919 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,919 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,919 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,919 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,920 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,920 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,921 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:43,921 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,921 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:43,921 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:43,921 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,922 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:43,922 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,922 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,922 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,922 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,923 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,923 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,923 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,924 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,924 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,924 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,925 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:43,925 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,925 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:43,925 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,925 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,926 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,926 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:43,926 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,926 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:43,926 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,927 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:43,927 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,928 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:43,928 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,928 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,928 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,928 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,928 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,929 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,929 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,929 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,929 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,929 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,930 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:43,931 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,931 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:43,931 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,931 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,931 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,932 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,932 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,932 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,932 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,932 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,932 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,933 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,933 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,934 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:43,935 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,935 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:43,935 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,935 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,935 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,936 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,936 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,936 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,936 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,936 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,937 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,937 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,938 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:43,938 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,938 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:43,938 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,938 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,939 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,939 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,939 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,939 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,939 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,940 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,940 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,940 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,940 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,940 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,940 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,941 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,941 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,942 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:43,942 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,942 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:43,942 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,942 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,943 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,943 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,943 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,943 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,944 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,944 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,944 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,944 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,945 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,945 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,945 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,946 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:43,946 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,946 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:43,946 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,947 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,947 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,947 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,947 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,947 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,948 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,948 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,948 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,948 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,949 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,949 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,949 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,950 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:43,950 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,950 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:43,951 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,951 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,951 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,951 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,951 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,952 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,952 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,952 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,952 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,952 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,953 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:43,953 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,954 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:43,954 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:43,954 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,954 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:43,954 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,954 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,955 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,955 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,955 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,955 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,955 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,956 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,956 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,957 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:43,957 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,958 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:43,958 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:43,958 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,958 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:43,958 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,958 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,959 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,959 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,959 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,959 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,959 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,960 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,960 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,961 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:43,961 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,962 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:43,962 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:43,962 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,962 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:43,962 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:43,962 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,963 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:43,963 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,963 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,963 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,963 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,964 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,964 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:43,965 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:43,965 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,965 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:43,966 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,966 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,966 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,966 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,966 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,966 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,967 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,967 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,967 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,967 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,968 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:43,968 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,969 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:43,969 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:43,969 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,969 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:43,969 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,969 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,970 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,970 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,970 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,970 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,970 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,971 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,972 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,972 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,972 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,972 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,972 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,973 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,973 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,973 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,973 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,973 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,974 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,975 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,976 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:43,976 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,976 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:43,976 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:43,976 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,977 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:43,977 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,977 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,977 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,977 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,977 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,978 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,978 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,979 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:43,979 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,979 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:43,979 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:43,980 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,980 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:43,980 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,980 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,980 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,981 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,981 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,981 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,981 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,982 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:43,982 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,982 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:43,983 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,983 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,983 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,983 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,983 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,984 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,984 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,984 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,984 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,984 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,985 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:43,985 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,986 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:43,986 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:43,986 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,986 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:43,986 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:43,987 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,987 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:43,987 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,987 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,987 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,988 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,988 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:43,989 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,990 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,990 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,990 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,990 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,990 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,991 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,991 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,991 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,991 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,991 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,992 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,992 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,993 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:43,993 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,993 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:43,993 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:43,993 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,994 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:43,994 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,994 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,994 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,994 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,995 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,995 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,995 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:43,996 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:43,996 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,996 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:43,997 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:43,997 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,997 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:43,997 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:43,997 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,997 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:43,998 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:43,998 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:43,998 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:43,998 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,998 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,999 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,999 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,999 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:43,999 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,000 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:44,000 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,000 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:44,001 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,001 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,001 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,001 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,001 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,002 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,002 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,002 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,002 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,002 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,003 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:44,003 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,004 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:44,004 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,004 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,004 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,005 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,005 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,005 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,005 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,005 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,005 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,006 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,006 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,007 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:44,008 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,008 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:44,008 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,008 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,009 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,009 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,009 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,009 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,009 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,009 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,010 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,010 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,011 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,013 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scanorama' -== 2023-01-30 12:27:44,013 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:44,013 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:44,013 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:44,014 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:44,015 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:44,016 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:44,017 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:44,017 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:44,017 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:44,018 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:44,019 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:44,019 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:44,020 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:44,020 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:44,020 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:44,021 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:44,021 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:44,021 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:44,022 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:44,023 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:44,023 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:44,024 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:44,025 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:44,025 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:44,026 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:44,026 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,027 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:44,027 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:44,027 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,027 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:44,027 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,027 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,028 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,028 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,028 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,028 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,028 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,029 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,029 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,030 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:44,030 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,031 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:44,031 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,031 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,031 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,031 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,031 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,032 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,032 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,032 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,032 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,032 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,033 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:44,034 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:44,034 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:44,034 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:44,035 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,035 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,035 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,035 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,035 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,036 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,036 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,037 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:44,037 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,037 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:44,037 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:44,037 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,038 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:44,038 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:44,038 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,038 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:44,038 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:44,038 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,039 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:44,039 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,040 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:44,040 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,040 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:44,040 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,041 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,041 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,041 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,041 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,041 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,042 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,042 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,042 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,042 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,043 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:44,043 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,043 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:44,044 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,044 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,044 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,044 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,044 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,045 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,045 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,045 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,045 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,046 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,046 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,047 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:44,047 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,048 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:44,048 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:44,048 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,048 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:44,048 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,048 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,049 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,049 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,049 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,049 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,049 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,050 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:44,050 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,051 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:44,051 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,051 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,051 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,052 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,052 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,052 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,052 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,052 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,052 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,053 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,053 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,054 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:44,055 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,055 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:44,055 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:44,055 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,055 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:44,056 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,056 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,056 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,056 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,056 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,057 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,057 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,058 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,059 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:44,059 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,059 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:44,059 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,059 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,060 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,060 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,060 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,060 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,060 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,060 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,061 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,061 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,061 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,061 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,061 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,062 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,062 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,063 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:44,063 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,063 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:44,063 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,063 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,064 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,064 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,064 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,064 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,064 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,065 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,065 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,065 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,066 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:44,066 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,066 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:44,067 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:44,067 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,067 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:44,067 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,067 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,067 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,068 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,068 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,068 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,068 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,069 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,069 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,070 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:44,070 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,070 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:44,070 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:44,071 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,071 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:44,071 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,071 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,071 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,072 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,072 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,072 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,072 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,072 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,073 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,073 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,073 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,074 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:44,074 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,074 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:44,074 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:44,075 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,075 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:44,075 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:44,075 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,075 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:44,076 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,076 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,076 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,076 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,077 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:44,078 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:44,078 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,078 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:44,078 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,078 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,079 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,079 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,079 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,079 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,079 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,079 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,080 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,080 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,081 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:44,081 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,081 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:44,082 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,082 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,082 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,082 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,082 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,082 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,083 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,083 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,083 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,083 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,084 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:44,084 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,085 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:44,085 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,085 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,085 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,085 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,085 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,086 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,086 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,086 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,086 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,086 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,087 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,087 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,088 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:44,088 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,089 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:44,089 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,089 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,089 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,089 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,090 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,090 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,090 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,090 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,090 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,091 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,092 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:44,092 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,092 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:44,092 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,092 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,093 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,093 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,093 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,093 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,093 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,093 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,094 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,094 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,095 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:44,095 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,095 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:44,095 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,096 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,096 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,096 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,096 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,096 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,097 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,097 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,097 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,097 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,098 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:44,098 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,098 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:44,099 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:44,099 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,099 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:44,099 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:44,099 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,100 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:44,100 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,100 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,100 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,100 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,101 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,101 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,102 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:44,102 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,103 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:44,103 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,103 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,103 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,103 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,103 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,104 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,104 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,104 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,104 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,104 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,105 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:44,106 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,106 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:44,106 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,106 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,106 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,107 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,107 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,107 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,107 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,107 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,108 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,108 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,109 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:44,109 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,109 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:44,109 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:44,109 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,110 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:44,110 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,110 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,110 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,110 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,111 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,111 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,111 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,111 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,111 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,111 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,112 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,112 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,113 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:44,113 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,113 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:44,113 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,114 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,114 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,114 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,114 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,114 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,115 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,115 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,115 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,115 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,116 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:44,116 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,116 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:44,117 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,117 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,117 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,117 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,117 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,118 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,118 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,118 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,118 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,118 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,118 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,119 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,119 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,119 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,119 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,120 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:44,120 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,121 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:44,121 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,121 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,121 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,121 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,121 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,122 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,122 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,122 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,122 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,122 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,123 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,123 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,123 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,123 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,123 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,126 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'memory_profiler' -== 2023-01-30 12:27:44,126 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:44,126 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:44,126 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:44,126 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:44,128 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-30 12:27:44,129 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-30 12:27:44,129 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-30 12:27:44,129 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-30 12:27:44,129 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-30 12:27:44,130 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-30 12:27:44,131 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-30 12:27:44,131 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-30 12:27:44,132 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-30 12:27:44,132 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'scib-pipeline') -== 2023-01-30 12:27:44,133 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -version = '0.2.0' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), # version suffix must be the same as R version - ('R', '4.2.1'), - ('scib', '1.1.1'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -# local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - - -exts_list = [ - ('anndata', '0.8.0', { - }), - # dateutil and click are in Python EC already - # ('python-dateutil', '2.8.2'), - # ('click', '8.1.3'), - # ('hatchling', '1.8.1'), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - # ('scvi-tools', '0.14.6', { - # 'checksums': ['f30a8a685624e49fa8a0d9b9d53152eb7b95e28b020ebd1c564387b2250bc38a'], - # # remove version restriction for setuptools, since it not actually required - # 'preinstallopts': "sed -i '/^setuptools/d' pyproject.toml && ", - # 'modulename': 'scvi', - # }), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - # already in python EC - # ('llvmlite', '0.39.1', { - # 'preinstallopts': local_llvmlite_preinstallopts, - # 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - # 'checksums': [ - # {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - # {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - # ], - # }), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - (name, version, { - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], - 'source_tmpl': '%(version)s.tar.gz', - 'preinstallopts': local_preinstallopts, - }), -] - -moduleclass = 'vis' - -== 2023-01-30 12:27:44,133 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), ('R', '4.2.1'), ('scib', '1.1.1'), ('scikit-learn', '1.1.2'), ('scikit-misc', '0.1.4'), ('rpy2', '3.5.7'), ('snakemake', '7.20.0'), ('networkx', '2.8.4'), ('ICU', '71.1'), ('Graphviz', '5.0.0'), ('GSL', '2.7'), ('Seaborn', '0.12.1'), ('numba', '0.56.4'), ('scanpy', '1.9.1'), ('h5py', '3.7.0'), ('leidenalg', '0.9.1'), ('umap-learn', '0.5.3'), ('pydot', '1.4.2'), ('igraph', '0.10.3'), ('python-igraph', '0.10.3'), ('Deprecated', '1.2.13'), ('torchvision', '0.13.1'), ('trvaep', '0.1.0'), ('scvi-tools', '0.19.0')] (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('anndata', '0.8.0', {}), ('anndata2ri', '1.1', {'preinstallopts': 'sed -i -e \'s/^build-backend = .*/build-backend = "setuptools.build_meta"/g\' pyproject.toml && sed -i -e \'s/^requires = .*/requires = ["setuptools"]/g\' pyproject.toml && sed -i -e "s/dynamic = \\[\'version\'\\]/version = \'%(version)s\'/g" pyproject.toml && '}), ('get_version', '3.5.4'), ('trvaep', '0.1.0'), ('annoy', '1.17.1'), ('geosketch', '1.2'), ('fbpca', '1.0'), ('scgen', '2.1.0'), ('bbknn', '1.5.1'), ('scanorama', '1.7.3'), ('memory-profiler', '0.61.0', {'sources': [{'download_filename': 'memory_profiler-%(version)s.tar.gz', 'filename': 'memory-profiler-%(version)s.tar.gz'}]}), ('scib-pipeline', '0.2.0', {'source_urls': ['https://github.com/theislab/scib-pipeline/archive/refs/tags/'], 'source_tmpl': '%(version)s.tar.gz', 'preinstallopts': "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && "})] (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/scib-pipeline (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value vis (type: ) -== 2023-01-30 12:27:44,134 easyconfig.py:686 INFO setting easyconfig parameter name: value scib-pipeline (type: ) -== 2023-01-30 12:27:44,135 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-30 12:27:44,135 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-30 12:27:44,135 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-30 12:27:44,135 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.2.0 (type: ) -== 2023-01-30 12:27:44,135 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-30 12:27:44,136 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:27:44,137 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:27:44,137 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:27:44,137 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', github_account='scib-pipeline', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:27:44,139 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-30 12:27:44,139 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,139 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-30 12:27:44,139 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-30 12:27:44,140 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,140 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-30 12:27:44,140 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,140 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,140 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,141 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,141 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,141 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,148 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,148 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,148 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,148 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,149 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,150 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-30 12:27:44,150 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,150 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-30 12:27:44,150 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,150 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,151 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,151 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,151 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,151 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,151 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,151 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,152 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,152 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,153 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-30 12:27:44,153 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,153 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-30 12:27:44,153 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-30 12:27:44,154 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,154 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-30 12:27:44,154 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,154 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,154 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,155 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,155 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,155 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,155 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,156 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:44,156 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,157 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gompi-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:44,157 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 exists... -== 2023-01-30 12:27:44,157 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,157 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-gfbf-2022a-R-4.2.1 module: False -== 2023-01-30 12:27:44,157 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:44,157 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,158 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCC-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:44,158 modules.py:628 INFO Checking whether R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 exists... -== 2023-01-30 12:27:44,158 modules.py:649 INFO Module R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,158 modules.py:656 INFO Result for existence check of R-bundle-Bioconductor/3.15-GCCcore-11.3.0-R-4.2.1 module: False -== 2023-01-30 12:27:44,158 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R-bundle-Bioconductor', 'version': '3.15', 'versionsuffix': '-R-4.2.1', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,159 modules.py:628 INFO Checking whether R/4.2.1-gompi-2022a exists... -== 2023-01-30 12:27:44,159 modules.py:649 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,160 modules.py:656 INFO Result for existence check of R/4.2.1-gompi-2022a module: False -== 2023-01-30 12:27:44,160 modules.py:628 INFO Checking whether R/4.2.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,160 modules.py:649 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,160 modules.py:656 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,160 modules.py:628 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,161 modules.py:649 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,161 modules.py:656 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,161 modules.py:628 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,161 modules.py:649 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,161 modules.py:656 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,161 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,162 modules.py:628 INFO Checking whether scib/1.1.1-gompi-2022a exists... -== 2023-01-30 12:27:44,163 modules.py:649 INFO Module scib/1.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,163 modules.py:656 INFO Result for existence check of scib/1.1.1-gompi-2022a module: False -== 2023-01-30 12:27:44,163 modules.py:628 INFO Checking whether scib/1.1.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,163 modules.py:649 INFO Module scib/1.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,163 modules.py:656 INFO Result for existence check of scib/1.1.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,164 modules.py:628 INFO Checking whether scib/1.1.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,164 modules.py:649 INFO Module scib/1.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,164 modules.py:656 INFO Result for existence check of scib/1.1.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,164 modules.py:628 INFO Checking whether scib/1.1.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,164 modules.py:649 INFO Module scib/1.1.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,165 modules.py:656 INFO Result for existence check of scib/1.1.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,165 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,165 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,165 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,165 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,165 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,166 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scib', 'version': '1.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,167 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gompi-2022a exists... -== 2023-01-30 12:27:44,167 modules.py:649 INFO Module scikit-learn/1.1.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,167 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gompi-2022a module: False -== 2023-01-30 12:27:44,167 modules.py:628 INFO Checking whether scikit-learn/1.1.2-gfbf-2022a exists... -== 2023-01-30 12:27:44,167 modules.py:649 INFO Module scikit-learn/1.1.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,168 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-gfbf-2022a module: False -== 2023-01-30 12:27:44,168 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,168 modules.py:649 INFO Module scikit-learn/1.1.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,168 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,168 modules.py:628 INFO Checking whether scikit-learn/1.1.2-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,168 modules.py:649 INFO Module scikit-learn/1.1.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,169 modules.py:656 INFO Result for existence check of scikit-learn/1.1.2-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,169 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,170 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gompi-2022a exists... -== 2023-01-30 12:27:44,170 modules.py:649 INFO Module scikit-misc/0.1.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,170 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gompi-2022a module: False -== 2023-01-30 12:27:44,170 modules.py:628 INFO Checking whether scikit-misc/0.1.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,171 modules.py:649 INFO Module scikit-misc/0.1.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,171 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,171 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,171 modules.py:649 INFO Module scikit-misc/0.1.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,171 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,172 modules.py:628 INFO Checking whether scikit-misc/0.1.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,172 modules.py:649 INFO Module scikit-misc/0.1.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,172 modules.py:656 INFO Result for existence check of scikit-misc/0.1.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,172 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,173 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,173 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-misc', 'version': '0.1.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,174 modules.py:628 INFO Checking whether rpy2/3.5.7-gompi-2022a exists... -== 2023-01-30 12:27:44,174 modules.py:649 INFO Module rpy2/3.5.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,174 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gompi-2022a module: False -== 2023-01-30 12:27:44,175 modules.py:628 INFO Checking whether rpy2/3.5.7-gfbf-2022a exists... -== 2023-01-30 12:27:44,175 modules.py:649 INFO Module rpy2/3.5.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,175 modules.py:656 INFO Result for existence check of rpy2/3.5.7-gfbf-2022a module: False -== 2023-01-30 12:27:44,175 modules.py:628 INFO Checking whether rpy2/3.5.7-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,175 modules.py:649 INFO Module rpy2/3.5.7-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,175 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,176 modules.py:628 INFO Checking whether rpy2/3.5.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,176 modules.py:649 INFO Module rpy2/3.5.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,176 modules.py:656 INFO Result for existence check of rpy2/3.5.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,176 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,176 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,176 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,177 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,177 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,177 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'rpy2', 'version': '3.5.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,178 modules.py:628 INFO Checking whether snakemake/7.20.0-gompi-2022a exists... -== 2023-01-30 12:27:44,178 modules.py:649 INFO Module snakemake/7.20.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,178 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gompi-2022a module: False -== 2023-01-30 12:27:44,179 modules.py:628 INFO Checking whether snakemake/7.20.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,179 modules.py:649 INFO Module snakemake/7.20.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,179 modules.py:656 INFO Result for existence check of snakemake/7.20.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,179 modules.py:628 INFO Checking whether snakemake/7.20.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,179 modules.py:649 INFO Module snakemake/7.20.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,180 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,180 modules.py:628 INFO Checking whether snakemake/7.20.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,180 modules.py:649 INFO Module snakemake/7.20.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,180 modules.py:656 INFO Result for existence check of snakemake/7.20.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,180 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,180 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,181 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,181 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,181 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,181 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'snakemake', 'version': '7.20.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,182 modules.py:628 INFO Checking whether networkx/2.8.4-gompi-2022a exists... -== 2023-01-30 12:27:44,182 modules.py:649 INFO Module networkx/2.8.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,183 modules.py:656 INFO Result for existence check of networkx/2.8.4-gompi-2022a module: False -== 2023-01-30 12:27:44,183 modules.py:628 INFO Checking whether networkx/2.8.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,183 modules.py:649 INFO Module networkx/2.8.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,183 modules.py:656 INFO Result for existence check of networkx/2.8.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,183 modules.py:628 INFO Checking whether networkx/2.8.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,183 modules.py:649 INFO Module networkx/2.8.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,184 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,184 modules.py:628 INFO Checking whether networkx/2.8.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,184 modules.py:649 INFO Module networkx/2.8.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,184 modules.py:656 INFO Result for existence check of networkx/2.8.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,184 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '2.8.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,185 modules.py:628 INFO Checking whether ICU/71.1-foss-2022a exists... -== 2023-01-30 12:27:44,185 modules.py:649 INFO Module ICU/71.1-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,186 modules.py:656 INFO Result for existence check of ICU/71.1-foss-2022a module: False -== 2023-01-30 12:27:44,186 modules.py:628 INFO Checking whether ICU/71.1-gompi-2022a exists... -== 2023-01-30 12:27:44,186 modules.py:649 INFO Module ICU/71.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,186 modules.py:656 INFO Result for existence check of ICU/71.1-gompi-2022a module: False -== 2023-01-30 12:27:44,186 modules.py:628 INFO Checking whether ICU/71.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,187 modules.py:649 INFO Module ICU/71.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,187 modules.py:656 INFO Result for existence check of ICU/71.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,187 modules.py:628 INFO Checking whether ICU/71.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,187 modules.py:649 INFO Module ICU/71.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,187 modules.py:656 INFO Result for existence check of ICU/71.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,188 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,188 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,188 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,188 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,188 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'ICU', 'version': '71.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,189 modules.py:628 INFO Checking whether Graphviz/5.0.0-foss-2022a exists... -== 2023-01-30 12:27:44,189 modules.py:649 INFO Module Graphviz/5.0.0-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,190 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-foss-2022a module: False -== 2023-01-30 12:27:44,190 modules.py:628 INFO Checking whether Graphviz/5.0.0-gompi-2022a exists... -== 2023-01-30 12:27:44,190 modules.py:649 INFO Module Graphviz/5.0.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,190 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gompi-2022a module: False -== 2023-01-30 12:27:44,190 modules.py:628 INFO Checking whether Graphviz/5.0.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,190 modules.py:649 INFO Module Graphviz/5.0.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,191 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,191 modules.py:628 INFO Checking whether Graphviz/5.0.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,191 modules.py:649 INFO Module Graphviz/5.0.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,191 modules.py:656 INFO Result for existence check of Graphviz/5.0.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,191 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,192 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,192 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,192 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,192 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Graphviz', 'version': '5.0.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,193 modules.py:628 INFO Checking whether GSL/2.7-foss-2022a exists... -== 2023-01-30 12:27:44,193 modules.py:649 INFO Module GSL/2.7-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,193 modules.py:656 INFO Result for existence check of GSL/2.7-foss-2022a module: False -== 2023-01-30 12:27:44,194 modules.py:628 INFO Checking whether GSL/2.7-gompi-2022a exists... -== 2023-01-30 12:27:44,194 modules.py:649 INFO Module GSL/2.7-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,194 modules.py:656 INFO Result for existence check of GSL/2.7-gompi-2022a module: False -== 2023-01-30 12:27:44,194 modules.py:628 INFO Checking whether GSL/2.7-gfbf-2022a exists... -== 2023-01-30 12:27:44,194 modules.py:649 INFO Module GSL/2.7-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,195 modules.py:656 INFO Result for existence check of GSL/2.7-gfbf-2022a module: False -== 2023-01-30 12:27:44,195 modules.py:628 INFO Checking whether GSL/2.7-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,195 modules.py:649 INFO Module GSL/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,195 modules.py:656 INFO Result for existence check of GSL/2.7-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,195 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,196 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,196 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '11.3.0'} -== 2023-01-30 12:27:44,197 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-30 12:27:44,197 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,197 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-30 12:27:44,197 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,198 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,198 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,198 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,198 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,198 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,199 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,199 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,199 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,199 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,200 modules.py:628 INFO Checking whether numba/0.56.4-gompi-2022a exists... -== 2023-01-30 12:27:44,200 modules.py:649 INFO Module numba/0.56.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,200 modules.py:656 INFO Result for existence check of numba/0.56.4-gompi-2022a module: False -== 2023-01-30 12:27:44,201 modules.py:628 INFO Checking whether numba/0.56.4-gfbf-2022a exists... -== 2023-01-30 12:27:44,201 modules.py:649 INFO Module numba/0.56.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,201 modules.py:656 INFO Result for existence check of numba/0.56.4-gfbf-2022a module: False -== 2023-01-30 12:27:44,201 modules.py:628 INFO Checking whether numba/0.56.4-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,201 modules.py:649 INFO Module numba/0.56.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,202 modules.py:656 INFO Result for existence check of numba/0.56.4-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,202 modules.py:628 INFO Checking whether numba/0.56.4-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,202 modules.py:649 INFO Module numba/0.56.4-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,202 modules.py:656 INFO Result for existence check of numba/0.56.4-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,202 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.56.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,203 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-30 12:27:44,203 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-30 12:27:44,204 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,204 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,204 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,204 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,205 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,205 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,205 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,205 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,205 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,205 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,206 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,206 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,206 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,206 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,206 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,207 modules.py:628 INFO Checking whether h5py/3.7.0-gompi-2022a exists... -== 2023-01-30 12:27:44,207 modules.py:649 INFO Module h5py/3.7.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,208 modules.py:656 INFO Result for existence check of h5py/3.7.0-gompi-2022a module: False -== 2023-01-30 12:27:44,208 modules.py:628 INFO Checking whether h5py/3.7.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,208 modules.py:649 INFO Module h5py/3.7.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,208 modules.py:656 INFO Result for existence check of h5py/3.7.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,208 modules.py:628 INFO Checking whether h5py/3.7.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,209 modules.py:649 INFO Module h5py/3.7.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,209 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,209 modules.py:628 INFO Checking whether h5py/3.7.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,209 modules.py:649 INFO Module h5py/3.7.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,209 modules.py:656 INFO Result for existence check of h5py/3.7.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,210 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'h5py', 'version': '3.7.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,211 modules.py:628 INFO Checking whether leidenalg/0.9.1-gompi-2022a exists... -== 2023-01-30 12:27:44,211 modules.py:649 INFO Module leidenalg/0.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,211 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gompi-2022a module: False -== 2023-01-30 12:27:44,211 modules.py:628 INFO Checking whether leidenalg/0.9.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,211 modules.py:649 INFO Module leidenalg/0.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,212 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,212 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,212 modules.py:649 INFO Module leidenalg/0.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,212 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,212 modules.py:628 INFO Checking whether leidenalg/0.9.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,212 modules.py:649 INFO Module leidenalg/0.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,213 modules.py:656 INFO Result for existence check of leidenalg/0.9.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,213 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'leidenalg', 'version': '0.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,214 modules.py:628 INFO Checking whether umap-learn/0.5.3-gompi-2022a exists... -== 2023-01-30 12:27:44,214 modules.py:649 INFO Module umap-learn/0.5.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,214 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gompi-2022a module: False -== 2023-01-30 12:27:44,214 modules.py:628 INFO Checking whether umap-learn/0.5.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,214 modules.py:649 INFO Module umap-learn/0.5.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,215 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,215 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,215 modules.py:649 INFO Module umap-learn/0.5.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,215 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,215 modules.py:628 INFO Checking whether umap-learn/0.5.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,216 modules.py:649 INFO Module umap-learn/0.5.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,216 modules.py:656 INFO Result for existence check of umap-learn/0.5.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,216 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'umap-learn', 'version': '0.5.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,217 modules.py:628 INFO Checking whether pydot/1.4.2-foss-2022a exists... -== 2023-01-30 12:27:44,217 modules.py:649 INFO Module pydot/1.4.2-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,217 modules.py:656 INFO Result for existence check of pydot/1.4.2-foss-2022a module: False -== 2023-01-30 12:27:44,218 modules.py:628 INFO Checking whether pydot/1.4.2-gompi-2022a exists... -== 2023-01-30 12:27:44,218 modules.py:649 INFO Module pydot/1.4.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,218 modules.py:656 INFO Result for existence check of pydot/1.4.2-gompi-2022a module: False -== 2023-01-30 12:27:44,218 modules.py:628 INFO Checking whether pydot/1.4.2-gfbf-2022a exists... -== 2023-01-30 12:27:44,218 modules.py:649 INFO Module pydot/1.4.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,218 modules.py:656 INFO Result for existence check of pydot/1.4.2-gfbf-2022a module: False -== 2023-01-30 12:27:44,219 modules.py:628 INFO Checking whether pydot/1.4.2-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,219 modules.py:649 INFO Module pydot/1.4.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,219 modules.py:656 INFO Result for existence check of pydot/1.4.2-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,219 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,220 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,220 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pydot', 'version': '1.4.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-30 12:27:44,221 modules.py:628 INFO Checking whether igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:44,221 modules.py:649 INFO Module igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,221 modules.py:656 INFO Result for existence check of igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:44,222 modules.py:628 INFO Checking whether igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,222 modules.py:649 INFO Module igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,222 modules.py:656 INFO Result for existence check of igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,222 modules.py:628 INFO Checking whether igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,222 modules.py:649 INFO Module igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,223 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,223 modules.py:628 INFO Checking whether igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,223 modules.py:649 INFO Module igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,223 modules.py:656 INFO Result for existence check of igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,223 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,224 modules.py:628 INFO Checking whether python-igraph/0.10.3-gompi-2022a exists... -== 2023-01-30 12:27:44,224 modules.py:649 INFO Module python-igraph/0.10.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,225 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gompi-2022a module: False -== 2023-01-30 12:27:44,225 modules.py:628 INFO Checking whether python-igraph/0.10.3-gfbf-2022a exists... -== 2023-01-30 12:27:44,225 modules.py:649 INFO Module python-igraph/0.10.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,225 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-gfbf-2022a module: False -== 2023-01-30 12:27:44,225 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,226 modules.py:649 INFO Module python-igraph/0.10.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,226 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,226 modules.py:628 INFO Checking whether python-igraph/0.10.3-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,226 modules.py:649 INFO Module python-igraph/0.10.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,226 modules.py:656 INFO Result for existence check of python-igraph/0.10.3-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,226 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'python-igraph', 'version': '0.10.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,227 modules.py:628 INFO Checking whether Deprecated/1.2.13-gompi-2022a exists... -== 2023-01-30 12:27:44,228 modules.py:649 INFO Module Deprecated/1.2.13-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,228 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gompi-2022a module: False -== 2023-01-30 12:27:44,228 modules.py:628 INFO Checking whether Deprecated/1.2.13-gfbf-2022a exists... -== 2023-01-30 12:27:44,228 modules.py:649 INFO Module Deprecated/1.2.13-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,228 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-gfbf-2022a module: False -== 2023-01-30 12:27:44,229 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,229 modules.py:649 INFO Module Deprecated/1.2.13-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,229 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,229 modules.py:628 INFO Checking whether Deprecated/1.2.13-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,229 modules.py:649 INFO Module Deprecated/1.2.13-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,230 modules.py:656 INFO Result for existence check of Deprecated/1.2.13-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,230 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,230 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,230 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,230 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,230 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,231 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Deprecated', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,232 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-30 12:27:44,232 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,232 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-30 12:27:44,232 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-30 12:27:44,232 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,233 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-30 12:27:44,233 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,233 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,233 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,233 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,233 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,234 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,234 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,235 modules.py:628 INFO Checking whether trvaep/0.1.0-gompi-2022a exists... -== 2023-01-30 12:27:44,235 modules.py:649 INFO Module trvaep/0.1.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,235 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gompi-2022a module: False -== 2023-01-30 12:27:44,235 modules.py:628 INFO Checking whether trvaep/0.1.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,235 modules.py:649 INFO Module trvaep/0.1.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,236 modules.py:656 INFO Result for existence check of trvaep/0.1.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,236 modules.py:628 INFO Checking whether trvaep/0.1.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,236 modules.py:649 INFO Module trvaep/0.1.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,236 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,236 modules.py:628 INFO Checking whether trvaep/0.1.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,237 modules.py:649 INFO Module trvaep/0.1.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,237 modules.py:656 INFO Result for existence check of trvaep/0.1.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,237 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,237 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,237 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,237 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,238 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,238 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'trvaep', 'version': '0.1.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,239 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gompi-2022a exists... -== 2023-01-30 12:27:44,239 modules.py:649 INFO Module scvi-tools/0.19.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,239 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gompi-2022a module: False -== 2023-01-30 12:27:44,239 modules.py:628 INFO Checking whether scvi-tools/0.19.0-gfbf-2022a exists... -== 2023-01-30 12:27:44,240 modules.py:649 INFO Module scvi-tools/0.19.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,240 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-gfbf-2022a module: False -== 2023-01-30 12:27:44,240 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCC-11.3.0 exists... -== 2023-01-30 12:27:44,240 modules.py:649 INFO Module scvi-tools/0.19.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,240 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCC-11.3.0 module: False -== 2023-01-30 12:27:44,241 modules.py:628 INFO Checking whether scvi-tools/0.19.0-GCCcore-11.3.0 exists... -== 2023-01-30 12:27:44,241 modules.py:649 INFO Module scvi-tools/0.19.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-30 12:27:44,241 modules.py:656 INFO Result for existence check of scvi-tools/0.19.0-GCCcore-11.3.0 module: False -== 2023-01-30 12:27:44,241 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,241 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,241 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,242 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,242 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-30 12:27:44,242 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scvi-tools', 'version': '0.19.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-30 12:27:44,244 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'scib_pipeline' -== 2023-01-30 12:27:44,244 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-30 12:27:44,245 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-e_wkopgr (previous value: '/tmp/vsc43810/eb-e_wkopgr') -== 2023-01-30 12:27:44,245 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-e_wkopgr as pip cache directory -== 2023-01-30 12:27:44,245 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-30 12:27:45,938 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-30 12:27:45,939 easyblock.py:1852 INFO Starting extension anndata -== 2023-01-30 12:27:45,939 build_log.py:267 INFO installing extension anndata 0.8.0 (1/12)... -== 2023-01-30 12:27:47,365 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:27:47,365 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:27:52,020 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:27:52,022 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:27:52,027 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:27:52,060 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:27:52,075 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,076 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,076 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,076 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,076 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,077 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,077 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,077 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,077 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,077 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,078 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,078 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,078 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,078 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,079 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,079 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,079 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,079 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,079 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,080 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,080 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,080 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,080 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,080 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,081 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-30 12:27:52,081 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-30 12:27:52,081 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,081 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,082 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,082 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,082 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-30 12:27:52,082 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-30 12:27:52,082 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,083 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,083 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,083 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,083 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,084 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,084 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,084 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,084 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-30 12:27:52,084 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-30 12:27:52,085 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,085 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,085 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,085 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,086 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,086 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,086 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,086 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,086 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:52,087 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:52,087 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,087 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,087 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:52,088 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:52,088 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,088 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,088 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,088 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,089 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,089 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,089 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:52,089 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:27:52,089 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,090 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,090 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:52,090 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:27:52,090 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,091 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,091 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:27:52,091 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:27:52,091 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,091 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:27:52,092 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,092 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,092 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,092 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,093 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,093 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,093 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,093 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,093 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,094 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,094 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,094 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:27:52,094 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,095 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,095 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,095 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,095 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:27:52,095 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:27:52,096 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:27:52,096 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:27:52,096 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,096 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,097 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,097 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,097 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,097 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,097 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,098 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,098 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:27:52,098 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:27:52,098 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,099 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:27:52,099 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:27:52,099 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:27:52,099 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:52,099 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:52,100 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:52,100 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:27:52,100 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-30 12:27:52,100 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-30 12:27:52,100 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:27:52,101 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:27:52,101 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:27:52,101 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:27:52,101 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:27:52,102 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:27:52,102 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-30 12:27:52,102 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-30 12:27:52,102 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,102 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:27:52,103 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:27:52,103 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:27:52,103 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:27:52,103 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:27:52,104 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:27:52,104 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:27:52,104 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:27:52,104 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:27:52,104 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:27:52,105 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:27:52,105 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,105 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,105 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,106 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:27:52,106 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:27:52,106 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:27:52,106 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:27:52,106 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:27:52,107 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,107 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:27:52,107 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:27:52,107 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:27:52,107 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:27:52,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:27:52,108 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,108 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:27:52,108 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,109 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:27:52,109 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,109 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:27:52,109 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,109 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:27:52,222 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:27:52,222 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:27:52,223 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:27:57,498 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:27:58,220 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:27:58,233 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata-0.8.0.tar.gz -== 2023-01-30 12:27:58,441 build_log.py:267 INFO configuring... -== 2023-01-30 12:27:58,449 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-30 12:27:58,449 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:27:58,660 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:27:58,661 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:27:58,661 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:27:58,915 build_log.py:267 INFO building... -== 2023-01-30 12:27:58,924 build_log.py:267 INFO testing... -== 2023-01-30 12:27:58,932 build_log.py:267 INFO installing... -== 2023-01-30 12:27:58,940 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:27:58,942 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:27:58,943 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:27:58,944 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:28:04,105 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:28:04,106 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:28:04,117 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:28:11,129 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata/anndata-0.8.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata - Building wheel for anndata (pyproject.toml): started - Building wheel for anndata (pyproject.toml): finished with status 'done' - Created wheel for anndata: filename=anndata-0.8.0-py3-none-any.whl size=96088 sha256=2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/94/11/1a/a47764057948cf4860f716a8020c41e1d6213fcb0c390ad796 -Successfully built anndata -Installing collected packages: anndata -Successfully installed anndata-0.8.0 - -== 2023-01-30 12:28:11,130 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:28:11,132 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:28:11,133 build_log.py:267 INFO ... (took 25 secs) -== 2023-01-30 12:28:11,141 easyblock.py:1852 INFO Starting extension anndata2ri -== 2023-01-30 12:28:11,141 build_log.py:267 INFO installing extension anndata2ri 1.1 (2/12)... -== 2023-01-30 12:28:12,928 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:28:12,929 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:28:12,929 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:28:12,932 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:28:12,935 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:28:12,969 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:28:12,981 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,981 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,982 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,982 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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12:28:12,983 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,983 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,983 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,984 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,984 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,984 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,984 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,984 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,985 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,985 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,985 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,985 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,986 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,986 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,986 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,986 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,987 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:12,987 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:12,987 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,987 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,987 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,988 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,988 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:12,988 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:12,988 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,989 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,989 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,989 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,989 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,989 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,990 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,990 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,990 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,990 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:12,991 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,991 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,991 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,991 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:12,991 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:12,992 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:12,992 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,992 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,992 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:12,993 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:12,993 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:12,993 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:12,993 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:12,993 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:12,994 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:12,994 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:12,994 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:12,994 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:12,995 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,995 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,995 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:12,995 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:12,995 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:12,996 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:12,996 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:12,996 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:12,996 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:12,997 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:12,997 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:12,997 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:12,997 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,997 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:12,998 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,998 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:12,998 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,998 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,999 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,999 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:12,999 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,999 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:12,999 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:13,000 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:13,000 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:13,000 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:13,000 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,001 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,001 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,001 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,001 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:13,001 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:13,002 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:13,002 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:13,002 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,002 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,003 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,003 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,003 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,003 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,003 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,004 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:13,004 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:13,004 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:13,004 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:13,005 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:13,005 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:13,005 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:13,005 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:13,005 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:13,006 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:13,006 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:13,006 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:13,006 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:13,007 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:13,007 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:13,007 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,007 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,007 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,008 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,008 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,008 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:13,008 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:13,009 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:13,009 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:13,009 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:13,009 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:13,009 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:13,010 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:13,010 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:13,010 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:13,010 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:13,011 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:13,011 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:13,011 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,011 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,011 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,012 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,012 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,012 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:13,012 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:13,013 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:13,013 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:13,013 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:13,013 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:13,013 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:13,014 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:13,014 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:13,014 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:13,015 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:13,015 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:13,015 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:13,015 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:13,016 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:13,016 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:13,016 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:13,020 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:13,020 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:13,021 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:28:14,087 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:28:14,812 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:28:14,822 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/anndata2ri-1.1.tar.gz -== 2023-01-30 12:28:15,013 build_log.py:267 INFO configuring... -== 2023-01-30 12:28:15,022 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:28:15,029 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:28:15,259 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:28:15,259 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:28:15,260 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:28:15,536 build_log.py:267 INFO building... -== 2023-01-30 12:28:15,552 build_log.py:267 INFO testing... -== 2023-01-30 12:28:15,559 build_log.py:267 INFO installing... -== 2023-01-30 12:28:15,567 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:28:15,568 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:28:15,569 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:28:16,983 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:28:16,984 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:28:16,995 run.py:236 INFO running cmd: sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && sed -i -e "s/dynamic = \['version'\]/version = '1.1'/g" pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:28:33,615 run.py:648 INFO cmd "sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && sed -i -e "s/dynamic = \['version'\]/version = '1.1'/g" pyproject.toml && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/anndata2ri/anndata2ri-1.1 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: anndata2ri - Building wheel for anndata2ri (pyproject.toml): started - Building wheel for anndata2ri (pyproject.toml): finished with status 'done' - Created wheel for anndata2ri: filename=anndata2ri-1.1-py3-none-any.whl size=25175 sha256=146f8fd12259d8679374b69ac5f195e37d2d3a95107cccd61090504ef7ccd507 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/b4/73/9d/ae9b4a9918b0b78dff74f45e3a6b44f17c918aa56fb3eb9357 -Successfully built anndata2ri -Installing collected packages: anndata2ri -Successfully installed anndata2ri-1.1 - -== 2023-01-30 12:28:33,615 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:28:33,616 environment.py:93 INFO Environment variable PYTHONPATH set to 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(previous value: 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-== 2023-01-30 12:28:33,617 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:28:33,617 build_log.py:267 INFO ... (took 22 secs) -== 2023-01-30 12:28:33,625 easyblock.py:1852 INFO Starting extension get_version -== 2023-01-30 12:28:33,627 build_log.py:267 INFO installing extension get_version 3.5.4 (3/12)... -== 2023-01-30 12:28:35,289 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:28:35,290 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:28:35,290 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:28:35,296 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:28:35,299 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:28:35,338 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:28:35,358 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,358 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,358 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,358 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,359 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,359 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,359 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,359 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,360 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,360 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,360 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,360 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,361 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,361 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,361 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,361 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,361 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,362 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,362 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,362 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,362 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,363 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,363 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,363 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,363 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:35,363 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:35,364 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,364 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,364 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,364 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,365 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:35,365 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:35,365 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,365 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,366 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,366 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,366 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,366 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,366 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,367 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,367 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,367 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,367 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,368 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,368 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,368 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:35,368 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:35,368 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:35,369 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,369 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,369 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:35,369 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:35,370 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:35,370 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:35,370 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:35,370 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:35,370 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:35,371 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:35,371 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:35,371 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:35,371 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,372 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,372 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:35,372 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:35,372 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:35,372 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:35,373 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:35,373 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:35,373 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:35,373 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:35,374 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:35,374 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:35,374 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,374 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:35,374 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,375 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:35,375 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,375 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,375 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,376 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,376 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,376 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,376 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,376 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,377 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:35,377 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:35,377 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,377 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,378 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,378 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,378 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:35,378 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:35,379 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:35,379 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:35,379 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,379 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,379 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,380 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,380 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,380 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,380 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,381 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:35,381 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:35,381 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:35,381 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:35,381 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:35,382 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:35,382 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:35,382 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:35,382 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:35,383 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:35,383 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:35,383 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:35,383 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:35,383 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:35,384 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:35,384 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,384 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,384 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,385 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,385 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,385 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:35,385 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:35,385 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:35,386 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:35,386 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:35,386 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:35,386 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:35,387 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:35,387 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:35,387 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:35,387 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:35,387 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:35,388 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:35,388 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,388 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,388 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,389 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,389 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,389 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:35,389 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:35,389 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:35,390 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:35,390 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:35,390 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:35,391 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:35,391 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:35,391 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:35,391 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:35,392 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:35,392 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:35,392 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:35,392 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,392 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:35,393 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,393 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:35,397 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:35,397 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:35,398 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:28:36,456 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:28:37,168 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:28:37,173 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/get_version-3.5.4.tar.gz -== 2023-01-30 12:28:37,398 build_log.py:267 INFO configuring... -== 2023-01-30 12:28:37,406 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:28:37,407 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:28:37,634 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:28:37,635 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:28:37,635 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:28:37,910 build_log.py:267 INFO building... -== 2023-01-30 12:28:37,919 build_log.py:267 INFO testing... -== 2023-01-30 12:28:37,927 build_log.py:267 INFO installing... -== 2023-01-30 12:28:37,942 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-30 12:28:37,942 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:28:37,943 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:28:37,943 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:28:42,355 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:28:42,356 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:28:42,367 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:28:47,254 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/get_version/get_version-3.5.4 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: get_version - Building wheel for get_version (pyproject.toml): started - Building wheel for get_version (pyproject.toml): finished with status 'done' - Created wheel for get_version: filename=get_version-3.5.4-py3-none-any.whl size=18331 sha256=b1d2797ea010ffb087315303edef89afb1a19d0e897a350d63db3b928742bb59 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/cf/80/18/e46eb57534df3a1ed6a8f0619f3da9ad4a9f76a90c82fe903d -Successfully built get_version -Installing collected packages: get_version -Successfully installed get_version-3.5.4 - -== 2023-01-30 12:28:47,255 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:28:47,255 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:28:47,256 build_log.py:267 INFO ... (took 13 secs) -== 2023-01-30 12:28:47,264 easyblock.py:1852 INFO Starting extension trvaep -== 2023-01-30 12:28:47,264 build_log.py:267 INFO installing extension trvaep 0.1.0 (4/12)... -== 2023-01-30 12:28:48,930 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:28:48,931 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:28:48,931 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:28:48,933 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:28:48,937 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:28:48,962 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:28:48,974 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,975 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,975 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,975 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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12:28:48,976 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,976 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,977 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,977 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,977 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,977 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,977 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,978 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,978 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,978 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,978 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,979 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,979 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,979 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,979 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,979 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,980 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:48,980 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:48,980 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,980 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,981 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,981 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,981 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:48,981 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:48,981 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,982 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,982 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,982 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,982 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,983 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,983 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,983 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,983 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,983 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:48,984 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,984 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,984 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,984 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:28:48,985 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:48,985 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:48,985 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,985 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,985 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:48,986 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:48,986 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:48,986 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:48,986 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:48,987 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:48,987 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:48,987 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:48,987 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:48,987 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:28:48,988 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,988 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,988 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:48,988 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:28:48,989 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:48,989 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:28:48,989 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:48,989 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:28:48,989 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:48,990 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:28:48,990 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:48,990 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:28:48,990 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,991 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:28:48,991 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,991 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:28:48,991 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,998 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,999 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,999 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:48,999 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:48,999 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:49,000 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:49,000 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:49,000 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:49,000 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:28:49,001 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,001 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,001 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,001 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,001 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:49,002 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:28:49,002 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:49,002 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:28:49,002 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,003 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,003 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,003 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,003 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,003 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,004 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,004 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:28:49,004 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:49,004 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:28:49,005 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:49,005 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:28:49,005 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:49,005 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:28:49,005 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:49,006 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:49,006 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:49,006 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:28:49,006 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:49,007 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:28:49,007 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:49,007 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:28:49,007 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,007 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,008 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,008 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,008 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,008 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:28:49,009 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:49,009 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:28:49,009 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:49,009 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:28:49,009 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:49,010 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:28:49,010 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:49,010 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:28:49,010 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:49,011 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:28:49,011 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:49,011 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:28:49,011 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,011 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,012 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,012 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,012 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,012 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:28:49,013 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:49,013 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:28:49,013 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:49,013 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:28:49,013 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:49,014 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:28:49,014 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:49,014 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:28:49,014 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:49,015 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:28:49,015 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:49,015 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:28:49,016 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:49,016 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:28:49,016 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:49,016 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:28:49,020 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:49,020 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:28:49,021 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:28:50,066 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:28:51,026 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:28:51,037 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/trvaep-0.1.0.tar.gz -== 2023-01-30 12:28:51,272 build_log.py:267 INFO configuring... -== 2023-01-30 12:28:51,280 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:28:51,281 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:28:51,516 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:28:51,517 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:28:51,518 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:28:51,789 build_log.py:267 INFO building... -== 2023-01-30 12:28:51,798 build_log.py:267 INFO testing... -== 2023-01-30 12:28:51,805 build_log.py:267 INFO installing... -== 2023-01-30 12:28:51,813 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:28:51,814 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:28:51,814 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:28:53,000 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:28:53,001 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:28:53,012 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:30:00,606 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: trvaep - Building wheel for trvaep (pyproject.toml): started - Building wheel for trvaep (pyproject.toml): finished with status 'done' - Created wheel for trvaep: filename=trvaep-0.1.0-py2.py3-none-any.whl size=16692 sha256=6f8b3ec8d5752a10c22dc8900f48aa03bc0f05a6209e21a3ecb38dfa2bfa7dc4 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/e6/45/0e/649225275b43c3c10635b7b5637466bc4b79c1673432fe2c17 -Successfully built trvaep -Installing collected packages: trvaep -Successfully installed trvaep-0.1.0 - -== 2023-01-30 12:30:00,607 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:30:00,607 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:30:00,608 build_log.py:267 INFO ... (took 1 min 13 secs) -== 2023-01-30 12:30:00,616 easyblock.py:1852 INFO Starting extension annoy -== 2023-01-30 12:30:00,618 build_log.py:267 INFO installing extension annoy 1.17.1 (5/12)... -== 2023-01-30 12:30:02,367 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:30:02,368 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:30:02,368 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:30:02,374 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:30:02,377 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:30:02,406 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:30:02,426 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,426 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,427 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,427 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,427 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,427 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,427 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,428 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,428 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,428 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,428 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,429 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,429 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,429 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,429 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,429 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,430 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,430 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,430 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,430 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,431 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,431 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,431 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,431 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,431 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:02,432 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:02,432 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,432 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,432 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,433 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,433 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:02,433 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:02,433 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,433 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,434 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,434 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,434 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,434 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,435 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,435 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,435 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,435 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,435 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,436 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,436 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,436 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:02,436 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:02,437 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:02,437 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,437 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,437 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:02,437 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:02,438 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:02,438 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:02,438 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:02,438 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:02,438 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:02,439 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:02,439 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:02,439 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:02,439 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,440 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,440 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:02,440 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:02,440 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:02,440 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:02,441 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:02,441 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:02,441 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:02,441 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:02,442 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:30:02,442 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:30:02,442 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,442 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:02,442 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,443 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:02,443 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,443 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,443 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,444 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,444 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,444 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,444 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,444 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,445 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:30:02,445 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:30:02,445 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,445 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,446 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,446 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,446 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:30:02,446 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:30:02,447 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:30:02,447 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:30:02,447 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,447 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,447 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,448 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,448 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,448 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,448 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,449 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:02,449 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:30:02,449 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:30:02,449 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:30:02,449 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:30:02,450 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:30:02,450 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:30:02,450 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:02,450 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:02,451 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:02,451 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:02,451 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:30:02,451 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:30:02,451 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:30:02,452 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:30:02,452 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,452 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,452 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,453 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,453 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,453 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:02,453 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:30:02,453 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:30:02,454 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:30:02,454 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:30:02,454 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:30:02,454 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:30:02,455 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:30:02,455 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:30:02,455 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:02,455 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:02,455 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:02,456 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:02,456 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,456 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,456 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,457 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,457 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,457 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:02,457 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:30:02,458 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:30:02,458 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:30:02,458 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:30:02,458 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:30:02,458 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:30:02,459 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:30:02,459 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:30:02,459 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:30:02,459 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:30:02,460 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:30:02,460 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:30:02,460 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,460 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:02,460 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,461 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:02,466 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:30:02,467 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:30:02,467 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:30:06,933 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:30:07,954 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:30:07,959 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/annoy-1.17.1.tar.gz -== 2023-01-30 12:30:08,259 build_log.py:267 INFO configuring... -== 2023-01-30 12:30:08,267 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:30:08,267 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:30:08,447 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:30:08,448 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:30:08,448 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:30:08,742 build_log.py:267 INFO building... -== 2023-01-30 12:30:08,750 build_log.py:267 INFO testing... -== 2023-01-30 12:30:08,758 build_log.py:267 INFO installing... -== 2023-01-30 12:30:08,766 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-30 12:30:08,766 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:30:08,767 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:30:08,767 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:30:14,043 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:30:14,043 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:30:14,055 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:30:45,782 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/annoy/annoy-1.17.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: annoy - Building wheel for annoy (setup.py): started - Building wheel for annoy (setup.py): finished with status 'done' - Created wheel for annoy: filename=annoy-1.17.1-cp310-cp310-linux_x86_64.whl size=541211 sha256=da00e16fd510862530fd1efce67fcf7c23fa5f114be1a2f1bab868479cbf87ab - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/34/d8/0d/f1b41ca54eef81939034f6d0bcb24de59097763a7273175652 -Successfully built annoy -Installing collected packages: annoy -Successfully installed annoy-1.17.1 - -== 2023-01-30 12:30:45,783 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:30:45,783 environment.py:93 INFO Environment variable PYTHONPATH 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-== 2023-01-30 12:30:45,784 build_log.py:267 INFO ... (took 45 secs) -== 2023-01-30 12:30:45,792 easyblock.py:1852 INFO Starting extension geosketch -== 2023-01-30 12:30:45,794 build_log.py:267 INFO installing extension geosketch 1.2 (6/12)... -== 2023-01-30 12:30:47,577 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:30:47,577 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:30:47,578 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:30:47,583 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:30:47,586 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:30:47,610 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:30:47,622 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,622 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,623 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,623 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,623 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,623 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,624 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,624 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,624 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,624 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,625 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,625 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,625 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,625 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,625 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,626 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,626 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,626 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,626 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,627 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,627 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,627 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,627 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,627 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,628 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:47,628 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:47,628 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,628 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,629 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,629 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,629 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:47,629 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:47,629 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,630 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,630 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,630 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,630 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,631 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,631 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,631 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,631 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,631 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,632 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,632 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,632 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,632 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:30:47,632 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:47,633 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:47,633 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,633 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,633 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:47,634 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:47,634 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:47,634 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:47,634 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:47,634 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:47,635 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:47,635 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:47,635 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:47,635 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:30:47,636 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,636 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,636 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:47,636 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:30:47,636 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:47,637 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:30:47,637 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:47,637 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:30:47,637 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:47,638 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:30:47,638 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:30:47,638 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:30:47,638 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,638 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:30:47,639 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,639 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:30:47,639 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,639 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,640 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,640 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,640 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,640 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,640 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,641 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,641 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:30:47,641 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:30:47,641 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,642 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,642 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,642 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,642 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:30:47,642 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:30:47,643 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:30:47,643 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:30:47,643 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,643 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,644 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,644 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,644 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,645 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,645 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,645 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:30:47,645 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:30:47,645 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:30:47,646 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:30:47,646 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:30:47,646 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:30:47,646 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:30:47,646 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:47,647 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:47,647 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:47,647 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:30:47,647 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:30:47,648 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:30:47,648 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:30:47,648 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:30:47,648 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,648 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,649 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,649 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,649 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,649 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:30:47,650 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:30:47,650 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:30:47,650 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:30:47,650 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:30:47,650 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:30:47,651 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:30:47,651 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:30:47,651 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:30:47,651 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:47,651 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:30:47,652 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:47,652 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:30:47,652 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,652 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,653 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,653 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,653 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,653 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:30:47,653 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:30:47,654 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:30:47,654 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:30:47,654 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:30:47,654 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:30:47,655 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:30:47,655 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:30:47,655 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:30:47,655 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:30:47,655 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:30:47,656 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:30:47,656 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:30:47,656 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,656 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:30:47,657 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,657 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:30:47,661 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:30:47,661 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:30:47,662 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:30:48,813 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:30:49,469 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:30:49,475 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/geosketch-1.2.tar.gz -== 2023-01-30 12:30:49,751 build_log.py:267 INFO configuring... -== 2023-01-30 12:30:49,759 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:30:49,760 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:30:49,944 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:30:49,945 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:30:49,945 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:30:50,254 build_log.py:267 INFO building... -== 2023-01-30 12:30:50,263 build_log.py:267 INFO testing... -== 2023-01-30 12:30:50,271 build_log.py:267 INFO installing... -== 2023-01-30 12:30:50,278 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:30:50,279 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:30:50,280 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:30:52,997 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:30:52,998 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:30:53,009 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:31:02,303 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/geosketch/geosketch-1.2 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: geosketch - Building wheel for geosketch (setup.py): started - Building wheel for geosketch (setup.py): finished with status 'done' - Created wheel for geosketch: filename=geosketch-1.2-py3-none-any.whl size=8171 sha256=3a33eee5e79d1fab8a32c67c35d935e36e895684beb96636145fe1bf1e994794 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/96/19/50/8ce27075d8f5e8556d06fab21bc1d6b261b472b9a63a7a6da8 -Successfully built geosketch -Installing collected packages: geosketch -Successfully installed geosketch-1.2 - -== 2023-01-30 12:31:02,304 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:31:02,305 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:31:02,306 build_log.py:267 INFO ... (took 16 secs) -== 2023-01-30 12:31:02,314 easyblock.py:1852 INFO Starting extension fbpca -== 2023-01-30 12:31:02,314 build_log.py:267 INFO installing extension fbpca 1.0 (7/12)... -== 2023-01-30 12:31:04,038 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:31:04,039 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:31:04,039 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:31:04,041 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:31:04,044 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:31:04,068 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:31:04,080 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,081 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,081 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,081 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,081 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,082 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,082 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,082 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,082 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,082 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,083 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,083 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,083 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,083 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,084 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,084 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,084 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,084 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,084 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,085 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,085 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,085 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,085 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,086 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,086 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:04,086 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:04,086 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,086 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,087 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,087 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,087 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:04,087 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:04,088 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,088 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,088 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,088 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,088 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,089 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,089 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,089 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,089 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,090 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,090 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,090 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,090 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,090 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:04,091 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:04,091 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:04,091 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,091 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,092 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:04,092 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:04,092 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:04,092 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:04,092 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:04,093 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:04,093 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:04,093 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:04,093 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:04,094 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:04,094 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,094 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,094 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:04,094 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:04,095 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:04,095 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:04,095 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:04,095 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:04,096 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:04,096 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:04,096 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:04,096 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:04,096 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,097 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:04,097 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,097 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:04,097 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,097 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,098 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,098 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,098 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,098 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,099 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,099 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,099 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:04,099 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:04,100 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,100 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,100 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,100 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,100 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:04,101 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:04,101 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:04,101 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:04,101 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,102 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,102 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,102 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,103 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,103 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:04,103 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:04,103 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:04,104 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:04,104 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:04,104 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:04,104 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:04,104 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:04,105 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:04,105 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:04,105 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:04,105 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:04,105 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:04,106 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:04,106 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:04,106 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,106 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,107 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,107 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,107 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,107 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:04,107 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:04,108 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:04,108 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:04,108 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:04,108 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:04,109 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:04,109 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:04,109 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:04,109 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:04,109 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:04,110 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:04,110 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:04,110 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,110 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,111 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,111 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,111 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,111 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:04,111 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:04,112 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:04,112 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:04,112 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:04,112 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:04,113 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:04,113 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:04,113 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:04,113 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:04,113 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:04,114 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:04,114 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:04,114 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,114 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:04,115 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,115 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:04,118 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:04,118 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:04,118 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:31:04,741 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:31:05,293 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:31:05,304 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/fbpca-1.0.tar.gz -== 2023-01-30 12:31:05,459 build_log.py:267 INFO configuring... -== 2023-01-30 12:31:05,467 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:31:05,468 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:31:05,671 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:31:05,672 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:31:05,672 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:31:05,963 build_log.py:267 INFO building... -== 2023-01-30 12:31:05,971 build_log.py:267 INFO testing... -== 2023-01-30 12:31:05,979 build_log.py:267 INFO installing... -== 2023-01-30 12:31:05,987 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-30 12:31:05,988 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:31:05,988 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:31:05,989 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:31:06,788 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:31:06,789 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:31:06,800 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:31:13,594 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/fbpca/fbpca-1.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: fbpca - Building wheel for fbpca (setup.py): started - Building wheel for fbpca (setup.py): finished with status 'done' - Created wheel for fbpca: filename=fbpca-1.0-py3-none-any.whl size=11375 sha256=c3e7923e243475d46e6f73f072b73fda46035951e28f2505e77a1de032318ee3 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/b0/18/24/41fc8c8485cd4ac05bba528fe1e48cff72ac980077e200ef5c -Successfully built fbpca -Installing collected packages: fbpca -Successfully installed fbpca-1.0 - -== 2023-01-30 12:31:13,595 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:31:13,596 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:31:13,597 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-30 12:31:13,605 easyblock.py:1852 INFO Starting extension scgen -== 2023-01-30 12:31:13,606 build_log.py:267 INFO installing extension scgen 2.1.0 (8/12)... -== 2023-01-30 12:31:15,388 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:31:15,389 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:31:15,389 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:31:15,391 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:31:15,394 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:31:15,418 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:31:15,430 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,430 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,430 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,430 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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12:31:15,432 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,432 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,432 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,432 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,432 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,433 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,433 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,433 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,433 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,434 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,434 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,434 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,434 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,434 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,435 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,435 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,435 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:15,435 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:15,436 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,436 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,436 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,436 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,436 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:15,437 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:15,437 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,437 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,437 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,438 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,438 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,438 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,438 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,439 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,439 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,439 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,439 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,439 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,440 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,440 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:15,440 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:15,440 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:15,440 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,441 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,441 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:15,441 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:15,441 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:15,442 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:15,442 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:15,442 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:15,442 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:15,442 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:15,443 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:15,443 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:15,443 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,443 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,444 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:15,444 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:15,444 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:15,444 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:15,444 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:15,445 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:15,445 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:15,445 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:15,445 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:15,446 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:15,446 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,446 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:15,446 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,446 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:15,447 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,447 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,447 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,447 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,448 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,448 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,448 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,448 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,448 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:15,449 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:15,449 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,449 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,449 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,450 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,450 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:15,450 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:15,450 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:15,450 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:15,451 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,451 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,451 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,451 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,452 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,452 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,452 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,452 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:15,452 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:15,453 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:15,453 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:15,453 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:15,453 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:15,454 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:15,454 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:15,454 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:15,454 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:15,454 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:15,455 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:15,455 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:15,455 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:15,455 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:15,456 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,456 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,456 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,456 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,456 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,457 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:15,457 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:15,457 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:15,457 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:15,458 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:15,458 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:15,458 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:15,458 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:15,458 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:15,459 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:15,459 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:15,459 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:15,459 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:15,460 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,460 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,460 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,460 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,460 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,461 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:15,461 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:15,461 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:15,461 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:15,462 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:15,462 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:15,462 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:15,462 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:15,462 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:15,463 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:15,463 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:15,463 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:15,463 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:15,464 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,464 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:15,464 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,464 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:15,467 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:15,467 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:15,468 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:31:16,102 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:31:16,798 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:31:16,809 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scgen-2.1.0.tar.gz -== 2023-01-30 12:31:16,932 build_log.py:267 INFO configuring... -== 2023-01-30 12:31:16,940 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:31:16,940 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:31:17,157 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:31:17,158 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:31:17,158 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:31:17,447 build_log.py:267 INFO building... -== 2023-01-30 12:31:17,455 build_log.py:267 INFO testing... -== 2023-01-30 12:31:17,463 build_log.py:267 INFO installing... -== 2023-01-30 12:31:17,471 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:31:17,472 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:31:17,472 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:31:18,275 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:31:18,276 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:31:18,287 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:31:24,977 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scgen/scgen-2.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: scgen - Building wheel for scgen (pyproject.toml): started - Building wheel for scgen (pyproject.toml): finished with status 'done' - Created wheel for scgen: filename=scgen-2.1.0-py3-none-any.whl size=24388 sha256=1cf2efc967feca0940e00e539e1e0c4115aead2110b0890d83cd42e006d9cc5e - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/90/b6/50/264078e8cb79952f66837774ffab4bafee3ffccf57b99d54a2 -Successfully built scgen -Installing collected packages: scgen -Successfully installed scgen-2.1.0 - -== 2023-01-30 12:31:24,978 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:31:24,979 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:31:24,980 build_log.py:267 INFO ... (took 11 secs) -== 2023-01-30 12:31:24,988 easyblock.py:1852 INFO Starting extension bbknn -== 2023-01-30 12:31:24,988 build_log.py:267 INFO installing extension bbknn 1.5.1 (9/12)... -== 2023-01-30 12:31:26,698 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:31:26,698 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:31:26,699 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:31:26,703 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:31:26,706 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:31:26,731 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:31:26,743 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,743 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,744 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,744 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,744 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,744 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,745 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,745 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,745 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,745 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,745 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,746 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,746 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,746 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,746 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,747 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,747 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,747 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,747 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,748 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,748 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,748 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,748 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,748 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,749 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:26,749 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:26,749 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,749 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,750 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,750 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,750 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:26,750 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:26,751 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,751 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,751 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,751 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,751 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,752 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,752 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,752 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,752 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,753 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,753 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,753 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,753 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,753 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:26,754 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:26,754 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:26,754 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,754 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,755 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:26,755 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:26,755 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:26,755 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:26,755 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:26,756 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:26,756 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:26,756 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:26,756 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:26,757 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:26,757 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,757 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,757 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:26,757 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:26,758 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:26,758 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:26,758 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:26,758 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:26,759 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:26,759 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:26,759 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:26,759 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:26,760 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,760 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:26,760 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,760 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:26,760 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,761 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,761 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,761 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,761 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,762 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,762 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,762 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,762 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:26,762 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:26,763 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,763 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,763 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,763 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,764 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:26,764 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:26,764 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:26,764 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:26,765 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,765 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,765 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,765 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,765 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,766 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,766 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,766 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:26,766 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:26,767 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:26,767 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:26,767 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:26,767 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:26,768 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:26,768 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:26,768 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:26,768 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:26,768 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:26,769 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:26,769 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:26,769 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:26,769 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:26,770 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,770 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,770 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,771 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,771 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,771 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:26,771 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:26,771 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:26,772 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:26,772 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:26,772 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:26,772 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:26,773 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:26,773 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:26,773 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:26,773 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:26,773 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:26,774 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:26,774 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,774 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,774 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,775 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,775 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,775 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:26,775 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:26,775 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:26,776 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:26,776 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:26,776 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:26,776 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:26,777 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:26,777 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:26,777 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:26,777 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:26,777 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:26,778 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:26,778 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,778 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:26,778 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,779 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:26,783 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:26,783 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:26,783 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:31:27,507 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:31:28,179 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:31:28,190 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/bbknn-1.5.1.tar.gz -== 2023-01-30 12:31:28,410 build_log.py:267 INFO configuring... -== 2023-01-30 12:31:28,418 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:31:28,424 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:31:28,652 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:31:28,653 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:31:28,654 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:31:28,948 build_log.py:267 INFO building... -== 2023-01-30 12:31:28,957 build_log.py:267 INFO testing... -== 2023-01-30 12:31:28,965 build_log.py:267 INFO installing... -== 2023-01-30 12:31:28,973 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-30 12:31:28,974 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:31:28,974 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:31:28,974 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:31:30,860 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:31:30,861 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:31:30,872 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:31:41,497 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/bbknn/bbknn-1.5.1 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: bbknn - Building wheel for bbknn (setup.py): started - Building wheel for bbknn (setup.py): finished with status 'done' - Created wheel for bbknn: filename=bbknn-1.5.1-py3-none-any.whl size=11302 sha256=121f46a8bac701249429df59906c48a8c036ad8df2e69d31e1c49b4295d03b52 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/a2/98/c3/e85f3a913b85dad73420961ba1f78aa94255ec11e5cdab58ef -Successfully built bbknn -Installing collected packages: bbknn -Successfully installed bbknn-1.5.1 - -== 2023-01-30 12:31:41,498 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:31:41,499 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:31:41,500 build_log.py:267 INFO ... (took 16 secs) -== 2023-01-30 12:31:41,508 easyblock.py:1852 INFO Starting extension scanorama -== 2023-01-30 12:31:41,509 build_log.py:267 INFO installing extension scanorama 1.7.3 (10/12)... -== 2023-01-30 12:31:43,292 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:31:43,293 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:31:43,293 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:31:43,299 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:31:43,302 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:31:43,340 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:31:43,354 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,355 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,355 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,355 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: 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12:31:43,357 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,357 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,357 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,357 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,358 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,358 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,358 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,358 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,359 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,359 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,359 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,359 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,360 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,360 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,360 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,360 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,361 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:43,361 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:43,361 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,362 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,362 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,362 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,362 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:43,363 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:43,363 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,363 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,363 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,364 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,364 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,364 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,365 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,365 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,365 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,365 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,366 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,366 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,366 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,366 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:43,367 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:43,367 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:43,367 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,367 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,368 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:43,368 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:43,368 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:43,368 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:43,369 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:43,369 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:43,369 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:43,369 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:43,370 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:43,370 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:43,370 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,370 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,371 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:43,371 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:43,371 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:43,371 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:43,372 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:43,372 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:43,372 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:43,372 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:43,373 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:43,373 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:43,373 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,373 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:43,374 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,374 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:43,374 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,375 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,375 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,375 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,375 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,376 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,376 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,376 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,376 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:43,377 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:43,377 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,377 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,377 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,378 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,378 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:43,378 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:43,379 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:43,379 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:43,379 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,379 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,380 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,380 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,380 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,380 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,381 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,381 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:43,381 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:43,381 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:43,382 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:43,382 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:43,382 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:43,382 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:43,383 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:43,383 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:43,383 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:43,383 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:43,384 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:43,384 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:43,384 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:43,385 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:43,385 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,385 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,385 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,386 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,386 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,386 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:43,386 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:43,387 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:43,387 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:43,387 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:43,387 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:43,388 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:43,388 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:43,388 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:43,388 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:43,389 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:43,389 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:43,389 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:43,389 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,390 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,390 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,390 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,391 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,391 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:43,391 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:43,391 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:43,392 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:43,392 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:43,392 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:43,392 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:43,393 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:43,393 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:43,393 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:43,393 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:43,394 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:43,394 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:43,394 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,394 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:43,395 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,395 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:43,400 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:43,400 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:43,401 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:31:44,298 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:31:45,057 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:31:45,068 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/scanorama-1.7.3.tar.gz -== 2023-01-30 12:31:45,326 build_log.py:267 INFO configuring... -== 2023-01-30 12:31:45,334 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:31:45,335 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:31:45,546 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:31:45,547 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:31:45,548 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:31:45,841 build_log.py:267 INFO building... -== 2023-01-30 12:31:45,849 build_log.py:267 INFO testing... -== 2023-01-30 12:31:45,857 build_log.py:267 INFO installing... -== 2023-01-30 12:31:45,865 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:31:45,866 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:31:45,867 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:31:47,267 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:31:47,268 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:31:47,279 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:31:54,631 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scanorama/scanorama-1.7.3 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scanorama - Building wheel for scanorama (setup.py): started - Building wheel for scanorama (setup.py): finished with status 'done' - Created wheel for scanorama: filename=scanorama-1.7.3-py3-none-any.whl size=12534 sha256=7ac7364f2a617adaf694b469a40e9faf42efef170f483bfa77f0dc2359797a69 - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/ac/de/e4/915d8c75e3fd468ac8458787f467bb930ef26e8676c79079a8 -Successfully built scanorama -Installing collected packages: scanorama -Successfully installed scanorama-1.7.3 - -== 2023-01-30 12:31:54,632 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:31:54,632 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:31:54,633 build_log.py:267 INFO ... (took 13 secs) -== 2023-01-30 12:31:54,641 easyblock.py:1852 INFO Starting extension memory-profiler -== 2023-01-30 12:31:54,642 build_log.py:267 INFO installing extension memory-profiler 0.61.0 (11/12)... -== 2023-01-30 12:31:56,329 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:31:56,329 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:31:56,329 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:31:56,331 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:31:56,334 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:31:56,358 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:31:56,370 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,370 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,371 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,371 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,371 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,371 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,371 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,372 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,372 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,372 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,372 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,373 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,373 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,373 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,373 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,373 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,374 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,374 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,374 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,374 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,375 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,375 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,375 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,375 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,375 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:56,376 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:56,376 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,376 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,376 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,377 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,377 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:56,377 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:56,377 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,377 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,378 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,378 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,378 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,378 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,379 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,379 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,379 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,379 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,379 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,380 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,380 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,380 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:31:56,380 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:56,381 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:56,381 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,381 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,381 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:56,381 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:56,382 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:56,382 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:56,382 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:56,382 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:56,383 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:56,383 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:56,383 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:56,383 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:31:56,383 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,384 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,384 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:56,384 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:31:56,384 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:56,385 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:31:56,385 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:56,385 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:31:56,385 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:56,385 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:31:56,386 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:56,386 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:31:56,386 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,386 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:31:56,387 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,387 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:31:56,387 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,387 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,387 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,388 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,388 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,388 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,388 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,389 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,389 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:56,389 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:31:56,389 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,390 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,390 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,390 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,390 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:56,390 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:31:56,391 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:56,391 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:31:56,391 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,391 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,392 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,392 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,392 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,392 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,392 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,393 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:31:56,393 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:56,393 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:31:56,393 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:56,394 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:31:56,394 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:56,394 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:31:56,394 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:56,394 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:56,395 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:56,395 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:31:56,395 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:56,395 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:31:56,396 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:56,396 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:31:56,396 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,397 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,397 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,397 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,397 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,397 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:31:56,398 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:56,398 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:31:56,398 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:56,398 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:31:56,399 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:56,399 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:31:56,399 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:56,399 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:31:56,399 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:56,400 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:31:56,400 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:56,400 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:31:56,400 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,401 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,401 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,401 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,401 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,401 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:31:56,402 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:56,402 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:31:56,402 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:56,402 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:31:56,402 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:56,403 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:31:56,403 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:56,403 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:31:56,403 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:56,404 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:31:56,404 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:56,404 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:31:56,404 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,404 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:31:56,405 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,405 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:31:56,408 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:56,409 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:31:56,409 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:31:57,329 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:31:57,983 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:31:57,994 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/memory-profiler-0.61.0.tar.gz -== 2023-01-30 12:31:58,221 build_log.py:267 INFO configuring... -== 2023-01-30 12:31:58,229 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:31:58,230 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:31:58,433 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:31:58,433 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:31:58,434 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:31:58,731 build_log.py:267 INFO building... -== 2023-01-30 12:31:58,740 build_log.py:267 INFO testing... -== 2023-01-30 12:31:58,747 build_log.py:267 INFO installing... -== 2023-01-30 12:31:58,755 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python 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-== 2023-01-30 12:31:58,757 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:31:58,757 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:31:59,553 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:31:59,554 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:31:59,565 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:32:06,954 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/memoryprofiler/memory_profiler-0.61.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: memory-profiler - Building wheel for memory-profiler (pyproject.toml): started - Building wheel for memory-profiler (pyproject.toml): finished with status 'done' - Created wheel for memory-profiler: filename=memory_profiler-0.61.0-py3-none-any.whl size=31822 sha256=ab96117dbcdf61c8a477943ec6a6a807a47deb60e5fc61b7e4ffbb1986bbf03c - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/f5/92/9d/8021a783c9757653a2695a0ce478a28faddbcbaf7491af5e7d -Successfully built memory-profiler -Installing collected packages: memory-profiler -Successfully installed memory-profiler-0.61.0 - -== 2023-01-30 12:32:06,955 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:32:06,956 environment.py:93 INFO Environment variable PYTHONPATH set to 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(took 12 secs) -== 2023-01-30 12:32:06,965 easyblock.py:1852 INFO Starting extension scib-pipeline -== 2023-01-30 12:32:06,966 build_log.py:267 INFO installing extension scib-pipeline 0.2.0 (12/12)... -== 2023-01-30 12:32:08,721 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-30 12:32:08,721 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-30 12:32:08,722 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-30 12:32:08,724 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-30 12:32:08,727 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-30 12:32:08,750 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-30 12:32:08,762 environment.py:93 INFO Environment 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EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,765 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,765 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,766 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,766 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,766 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,766 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,767 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,767 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,767 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,767 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,767 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:32:08,768 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-30 12:32:08,768 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,768 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,768 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:08,769 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:08,769 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:32:08,769 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-30 12:32:08,769 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,770 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,770 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,770 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,770 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,770 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,771 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,771 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,771 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,772 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,772 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,772 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,772 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,773 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-30 12:32:08,773 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:32:08,773 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:32:08,773 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,773 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,774 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:32:08,774 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:32:08,774 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:32:08,774 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:32:08,775 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:32:08,775 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:32:08,775 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:32:08,775 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:32:08,775 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:32:08,776 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-30 12:32:08,776 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,776 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,776 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:32:08,777 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-30 12:32:08,777 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:32:08,777 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-30 12:32:08,777 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:32:08,777 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-30 12:32:08,778 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:32:08,778 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-30 12:32:08,778 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:32:08,778 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-30 12:32:08,779 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:08,779 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:08,779 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,779 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-30 12:32:08,779 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,780 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,780 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,780 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,780 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,781 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,781 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,781 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,781 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:32:08,781 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:32:08,782 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,782 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,782 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,782 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,783 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:32:08,783 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-30 12:32:08,783 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:32:08,783 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-30 12:32:08,784 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,784 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,784 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,784 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,785 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,785 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,785 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,785 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-30 12:32:08,785 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:32:08,786 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-30 12:32:08,786 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:32:08,786 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-30 12:32:08,786 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:32:08,787 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-30 12:32:08,787 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:32:08,787 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:32:08,787 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:32:08,788 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-30 12:32:08,788 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:32:08,788 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-30 12:32:08,788 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:32:08,788 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-30 12:32:08,789 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,789 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,789 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,789 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,790 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,790 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-30 12:32:08,790 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:32:08,790 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-30 12:32:08,790 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:32:08,791 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-30 12:32:08,791 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:32:08,791 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-30 12:32:08,791 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:32:08,792 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-30 12:32:08,792 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:32:08,792 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-30 12:32:08,792 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:32:08,792 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-30 12:32:08,793 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,793 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,793 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,793 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,794 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,794 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-30 12:32:08,794 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:32:08,794 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-30 12:32:08,795 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:32:08,795 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-30 12:32:08,795 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:32:08,795 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-30 12:32:08,795 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:32:08,796 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-30 12:32:08,796 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:32:08,796 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-30 12:32:08,796 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:32:08,797 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-30 12:32:08,797 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,797 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-30 12:32:08,797 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,797 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-30 12:32:08,800 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:32:08,801 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-30 12:32:08,801 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-30 12:32:09,558 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-30 12:32:10,198 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:32:10,209 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/s/scib-pipeline/extensions/0.2.0.tar.gz -== 2023-01-30 12:32:12,158 build_log.py:267 INFO configuring... -== 2023-01-30 12:32:12,172 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:32:12,173 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-30 12:32:12,395 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-30 12:32:12,396 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-30 12:32:12,397 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-30 12:32:12,665 build_log.py:267 INFO building... -== 2023-01-30 12:32:12,674 build_log.py:267 INFO testing... -== 2023-01-30 12:32:12,682 build_log.py:267 INFO installing... -== 2023-01-30 12:32:12,696 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/dm-tree/0.1.8-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTorch-Lightning/1.7.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/typing-extensions/4.3.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tensorboard/2.10.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/openpyxl/3.0.10-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/jax/0.3.23-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/flatbuffers-python/2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/GitPython/3.1.27-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/IPython/8.5.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/BeautifulSoup/4.10.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/lxml/4.9.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib/graphviz/python3:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Arrow/8.0.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/GDAL/3.5.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.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-== 2023-01-30 12:32:12,698 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:32:12,698 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:32:13,565 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:32:13,566 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-30 12:32:13,577 run.py:236 INFO running cmd: sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-30 12:32:20,741 run.py:648 INFO cmd "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && sed -i 's|louvain>=0.8||g' setup.cfg && /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a/scibpipeline/scib-pipeline-0.2.0 - Preparing metadata (setup.py): started - Preparing metadata (setup.py): finished with status 'done' -Building wheels for collected packages: scIB - Building wheel for scIB (setup.py): started - Building wheel for scIB (setup.py): finished with status 'done' - Created wheel for scIB: filename=scIB-0.1.1-py3-none-any.whl size=33634 sha256=7bfd8e46aae8114b3756ec7ef247ff33327daf136e82b59a34f018d32795f91a - Stored in directory: /tmp/vsc43810/eb-e_wkopgr/pip/wheels/f2/ce/97/378c3d0549dbd88cb4f21948c441418f962f2998bf438ead28 -Successfully built scIB -Installing collected packages: scIB -Successfully installed scIB-0.1.1 - -== 2023-01-30 12:32:20,742 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:32:20,743 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-30 12:32:20,743 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:32:20,744 build_log.py:267 INFO ... 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(previous value: 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-== 2023-01-30 12:32:23,354 environment.py:93 INFO Environment variable MANPATH set to 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-== 2023-01-30 12:32:23,354 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:32:23,355 environment.py:93 INFO Environment variable _LMFILES_ set to 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-== 2023-01-30 12:32:23,355 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_ACLOCAL_PATH set to 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(previous value: 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-== 2023-01-30 12:32:23,357 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_CPATH set to 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-== 2023-01-30 12:32:23,359 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-30 12:32:23,362 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to 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2023-01-30 12:32:23,417 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:23,417 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-30 12:32:23,419 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/rpy2/3.5.7-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-misc/0.1.4-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-30 12:32:23,419 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 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(took 5 mins 6 secs) -== 2023-01-30 12:32:23,443 build_log.py:267 INFO restore after iterating... -== 2023-01-30 12:32:23,449 easyblock.py:3877 INFO Starting postiter step -== 2023-01-30 12:32:23,449 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:32:23,450 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:32:23,450 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:32:23,450 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:32:23,451 easyblock.py:3885 INFO Running method post_iter_step part of step postiter -== 2023-01-30 12:32:23,451 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:32:23,457 build_log.py:267 INFO postprocessing... -== 2023-01-30 12:32:23,463 easyblock.py:3877 INFO Starting postproc step -== 2023-01-30 12:32:23,463 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:32:23,463 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:32:23,464 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:32:23,464 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:32:23,464 easyblock.py:3885 INFO Running method post_install_step part of step postproc -== 2023-01-30 12:32:23,465 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-30 12:32:23,466 filetools.py:339 INFO Symlinked lib to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib64 -== 2023-01-30 12:32:23,466 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-30 12:32:23,472 build_log.py:267 INFO sanity checking... -== 2023-01-30 12:32:23,483 easyblock.py:3877 INFO Starting sanitycheck step -== 2023-01-30 12:32:23,484 easyconfig.py:1688 INFO Generating template values... -== 2023-01-30 12:32:23,484 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-30 12:32:23,484 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-30 12:32:23,485 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='scib-pipeline', builddir='/tmp/vsc43810/easybuild/build/scibpipeline/0.2.0/foss-2022a', github_account='scib-pipeline', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a', module_name='scib-pipeline/0.2.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='scib-pipeline', nameletter='s', nameletterlower='s', namelower='scib-pipeline', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.1', toolchain_name='foss', toolchain_version='2022a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='' -== 2023-01-30 12:32:23,485 easyblock.py:3885 INFO Running method sanity_check_step part of step sanitycheck -== 2023-01-30 12:32:23,486 easyblock.py:3286 INFO Using (only) sanity check paths specified by easyconfig file: {'files': [], 'dirs': ['lib/python3.10/site-packages']} -== 2023-01-30 12:32:23,492 easyblock.py:1671 INFO Loading fake module (scib-pipeline/0.2.0-foss-2022a) -== 2023-01-30 12:32:25,279 easyblock.py:1574 INFO Fixed symlink lib64 in paths for CMAKE_LIBRARY_PATH: ['lib64'] -> [] -== 2023-01-30 12:32:25,281 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LD_LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-30 12:32:25,281 easyblock.py:1588 INFO Only retaining paths for LD_LIBRARY_PATH that contain at least one file: ['lib'] -> [] -== 2023-01-30 12:32:25,281 easyblock.py:1574 INFO Fixed symlink lib64 in paths for LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] -== 2023-01-30 12:32:25,284 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline (parents: True, set_gid: False, sticky: False) -== 2023-01-30 12:32:25,285 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all/scib-pipeline/0.2.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/scib-pipeline - - -Included extensions -=================== -anndata-0.8.0, anndata2ri-1.1, annoy-1.17.1, bbknn-1.5.1, fbpca-1.0, -geosketch-1.2, get_version-3.5.4, memory-profiler-0.61.0, scanorama-1.7.3, -scgen-2.1.0, scib-pipeline-0.2.0, 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isloaded("Graphviz/5.0.0-GCCcore-11.3.0") ) then - load("Graphviz/5.0.0-GCCcore-11.3.0") -end - -if not ( isloaded("GSL/2.7-GCC-11.3.0") ) then - load("GSL/2.7-GCC-11.3.0") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("numba/0.56.4-foss-2022a") ) then - load("numba/0.56.4-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("h5py/3.7.0-foss-2022a") ) then - load("h5py/3.7.0-foss-2022a") -end - -if not ( isloaded("leidenalg/0.9.1-foss-2022a") ) then - load("leidenalg/0.9.1-foss-2022a") -end - -if not ( isloaded("umap-learn/0.5.3-foss-2022a") ) then - load("umap-learn/0.5.3-foss-2022a") -end - -if not ( isloaded("pydot/1.4.2-GCCcore-11.3.0") ) then - load("pydot/1.4.2-GCCcore-11.3.0") -end - -if not ( isloaded("igraph/0.10.3-foss-2022a") ) then - load("igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("python-igraph/0.10.3-foss-2022a") ) then - load("python-igraph/0.10.3-foss-2022a") -end - -if not ( isloaded("Deprecated/1.2.13-foss-2022a") ) then - load("Deprecated/1.2.13-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("trvaep/0.1.0-foss-2022a") ) then - load("trvaep/0.1.0-foss-2022a") -end - -if not ( isloaded("scvi-tools/0.19.0-foss-2022a") ) then - load("scvi-tools/0.19.0-foss-2022a") -end - -prepend_path("CMAKE_PREFIX_PATH", root) -prepend_path("LIBRARY_PATH", pathJoin(root, "lib")) -prepend_path("PATH", pathJoin(root, "bin")) -setenv("EBROOTSCIBMINPIPELINE", root) -setenv("EBVERSIONSCIBMINPIPELINE", "0.2.0") -setenv("EBDEVELSCIBMINPIPELINE", pathJoin(root, "easybuild/scib-pipeline-0.2.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 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-== 2023-01-30 12:32:32,225 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-30 12:32:32,225 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: 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-== 2023-01-30 12:32:32,225 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: 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ion/3.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/graphite2/1.3.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/DBus/1.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSPR/4.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NSS/3.79-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qt5/5.15.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scib/1.1.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-misc/0.1.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/OpenPGM/5.2.122-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libsodium/1.0.18-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/ZeroMQ/4.3.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxslt/1.1.34-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lxml/4.9.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/BeautifulSoup/4.10.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/IPython/8.5.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/rpy2/3.5.7-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/git/2.36.0-GCCcore-11.3.0-nodocs.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/GitPython/3.1.27-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/snakemake/7.20.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ICU/71.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Java/11.0.2.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Graphviz/5.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GSL/2.7-GCC-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/pydot/1.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Deprecated/1.2.13-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow-SIMD/9.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/torchvision/0.13.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/adjustText/0.7.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/trvaep/0.1.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/flatbuffers-python/2.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/jax/0.3.23-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/openpyxl/3.0.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tensorboard/2.10.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/typing-extensions/4.3.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTorch-Lightning/1.7.7-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/dm-tree/0.1.8-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scvi-tools/0.19.0-foss-2022a.lua') -== 2023-01-30 12:32:32,255 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-30 12:32:45,694 environment.py:93 INFO Environment variable OMPI_MCA_rmaps_base_oversubscribe set to 1 (previously undefined) -== 2023-01-30 12:32:45,695 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-30 12:32:45,695 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:32:45,697 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:32:45,697 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:32:53,496 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:32:53,507 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:33:03,768 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:33:03,769 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:33:06,835 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:33:06,845 run.py:236 INFO running cmd: python -c "import anndata" -== 2023-01-30 12:33:18,928 extensioneasyblock.py:184 INFO Sanity check for anndata successful! -== 2023-01-30 12:33:18,929 easyblock.py:3438 INFO Sanity check for 'anndata' extension passed! -== 2023-01-30 12:33:18,930 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:33:18,930 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:33:18,930 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:33:18,931 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:33:21,884 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:33:21,893 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:33:29,926 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:33:29,927 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:33:31,954 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:33:31,964 run.py:236 INFO running cmd: python -c "import anndata2ri" -== 2023-01-30 12:33:48,073 extensioneasyblock.py:184 INFO Sanity check for anndata2ri successful! -== 2023-01-30 12:33:48,074 easyblock.py:3438 INFO Sanity check for 'anndata2ri' extension passed! -== 2023-01-30 12:33:48,074 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:33:48,074 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:33:48,075 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:33:48,075 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:33:52,654 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:33:52,664 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:34:02,194 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:34:02,195 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:34:04,436 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:34:04,446 run.py:236 INFO running cmd: python -c "import get_version" -== 2023-01-30 12:34:05,204 extensioneasyblock.py:184 INFO Sanity check for get_version successful! -== 2023-01-30 12:34:05,205 easyblock.py:3438 INFO Sanity check for 'get_version' extension passed! -== 2023-01-30 12:34:05,205 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:34:05,206 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:34:05,206 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:34:05,206 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:34:06,142 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:34:06,152 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:34:09,436 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:34:09,437 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:34:10,725 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:34:10,735 run.py:236 INFO running cmd: python -c "import trvaep" -== 2023-01-30 12:34:51,428 extensioneasyblock.py:184 INFO Sanity check for trvaep successful! -== 2023-01-30 12:34:51,429 easyblock.py:3438 INFO Sanity check for 'trvaep' extension passed! -== 2023-01-30 12:34:51,430 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:34:51,430 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:34:51,430 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:34:51,431 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:34:57,637 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:34:57,647 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:35:07,529 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:35:07,530 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:35:10,050 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:35:10,060 run.py:236 INFO running cmd: python -c "import annoy" -== 2023-01-30 12:35:10,439 extensioneasyblock.py:184 INFO Sanity check for annoy successful! -== 2023-01-30 12:35:10,440 easyblock.py:3438 INFO Sanity check for 'annoy' extension passed! -== 2023-01-30 12:35:10,440 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:35:10,440 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:35:10,441 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:35:10,441 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:35:11,418 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:35:11,428 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:35:14,574 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:35:14,575 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:35:15,748 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:35:15,758 run.py:236 INFO running cmd: python -c "import geosketch" -== 2023-01-30 12:35:29,944 extensioneasyblock.py:184 INFO Sanity check for geosketch successful! -== 2023-01-30 12:35:29,946 easyblock.py:3438 INFO Sanity check for 'geosketch' extension passed! -== 2023-01-30 12:35:29,946 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:35:29,946 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:35:29,947 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:35:29,947 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:35:33,386 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:35:33,396 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:35:41,926 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:35:41,927 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:35:44,126 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:35:44,136 run.py:236 INFO running cmd: python -c "import fbpca" -== 2023-01-30 12:35:46,920 extensioneasyblock.py:184 INFO Sanity check for fbpca successful! -== 2023-01-30 12:35:46,921 easyblock.py:3438 INFO Sanity check for 'fbpca' extension passed! -== 2023-01-30 12:35:46,922 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:35:46,922 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:35:46,922 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:35:46,923 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:35:48,056 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:35:48,065 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:35:51,378 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:35:51,379 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:35:52,803 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:35:52,813 run.py:236 INFO running cmd: python -c "import scgen" -== 2023-01-30 12:36:57,907 extensioneasyblock.py:184 INFO Sanity check for scgen successful! -== 2023-01-30 12:36:57,908 easyblock.py:3438 INFO Sanity check for 'scgen' extension passed! -== 2023-01-30 12:36:57,908 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:36:57,908 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:36:57,909 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:36:57,909 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:37:04,435 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:37:04,445 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:37:15,750 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:37:15,751 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:37:20,017 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:37:20,028 run.py:236 INFO running cmd: python -c "import bbknn" -== 2023-01-30 12:38:04,774 extensioneasyblock.py:184 INFO Sanity check for bbknn successful! -== 2023-01-30 12:38:04,775 easyblock.py:3438 INFO Sanity check for 'bbknn' extension passed! -== 2023-01-30 12:38:04,775 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:38:04,776 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:38:04,776 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:38:04,776 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:38:12,159 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:38:12,170 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:38:24,254 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:38:24,254 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:38:32,004 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:38:32,014 run.py:236 INFO running cmd: python -c "import scanorama" -== 2023-01-30 12:38:53,136 extensioneasyblock.py:184 INFO Sanity check for scanorama successful! -== 2023-01-30 12:38:53,137 easyblock.py:3438 INFO Sanity check for 'scanorama' extension passed! -== 2023-01-30 12:38:53,137 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:38:53,137 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:38:53,138 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:38:53,138 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:38:58,360 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:38:58,370 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:39:10,507 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:39:10,508 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:39:16,024 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:39:16,041 run.py:236 INFO running cmd: python -c "import memory_profiler" -== 2023-01-30 12:39:23,878 extensioneasyblock.py:184 INFO Sanity check for memory-profiler successful! -== 2023-01-30 12:39:23,879 easyblock.py:3438 INFO Sanity check for 'memory-profiler' extension passed! -== 2023-01-30 12:39:23,879 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-30 12:39:23,880 pythonpackage.py:816 INFO Detection of downloaded depenencies enabled, checking output of installation command... -== 2023-01-30 12:39:23,880 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-30 12:39:23,880 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-30 12:39:30,113 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-30 12:39:30,124 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check -== 2023-01-30 12:39:43,052 pythonpackage.py:884 INFO `/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip check` completed successfully -== 2023-01-30 12:39:43,053 pythonpackage.py:455 INFO Running command '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' -== 2023-01-30 12:39:49,003 pythonpackage.py:910 INFO Found 0 invalid packages out of 309 packages -== 2023-01-30 12:39:49,013 run.py:236 INFO running cmd: python -c "import scib_pipeline" -== 2023-01-30 12:39:49,693 extension.py:280 WARNING Sanity check for 'scib-pipeline' extension failed: command "python -c "import scib_pipeline"" failed; output: -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module named 'scib_pipeline' -== 2023-01-30 12:39:49,694 easyblock.py:3436 WARNING failing sanity check for 'scib-pipeline' extension: command "python -c "import scib_pipeline"" failed; output: -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module named 'scib_pipeline', -== 2023-01-30 12:39:49,694 easyblock.py:3442 WARNING extensions sanity check failed for 1 extensions: -== 2023-01-30 12:39:49,694 easyblock.py:3164 INFO Checking for banned/required linked shared libraries... -== 2023-01-30 12:39:49,695 run.py:236 INFO running cmd: flexiblas list -== 2023-01-30 12:39:50,381 easyblock.py:3186 INFO Banned libraries to check for: libimkl_gnu_thread.so, libimkl_sequential.so, libopenblas.so, libblis.so, libnetlib.so -== 2023-01-30 12:39:50,383 easyblock.py:3226 INFO Using default subdirectories to check for banned/required linked shared libraries: ('bin', 'lib', 'lib64') -== 2023-01-30 12:39:50,391 run.py:236 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/bin/mprof -== 2023-01-30 12:39:50,527 run.py:236 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/0.2.0-foss-2022a/lib/python3.10 -== 2023-01-30 12:39:53,956 filetools.py:384 INFO Path /tmp/vsc43810/eb-e_wkopgr/tmpr1k85tdw successfully removed. -== 2023-01-30 12:39:53,959 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to 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(previous value: 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-== 2023-01-30 12:39:53,961 environment.py:93 INFO Environment variable MANPATH set to 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-== 2023-01-30 12:39:53,962 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-30 12:39:53,962 environment.py:93 INFO Environment variable _LMFILES_ set to 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-== 2023-01-30 12:39:53,963 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_ACLOCAL_PATH set to 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(previous value: 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-== 2023-01-30 12:39:53,975 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-30 12:39:53,978 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to 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2023-01-30 12:39:54,025 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,025 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,026 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,026 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,026 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,027 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,027 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,027 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,027 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,028 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,028 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,028 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,028 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,029 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,029 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,029 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,030 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,030 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,030 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,030 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,031 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,031 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,031 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,032 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,032 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-30 12:39:54,032 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-30 12:39:54,032 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,033 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,033 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,033 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/include -I/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/include -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,034 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-30 12:39:54,034 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-30 12:39:54,034 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,035 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,035 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,035 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,036 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,036 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,036 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,036 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,037 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-30 12:39:54,037 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-30 12:39:54,037 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,038 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,038 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,038 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,038 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,039 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,039 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,039 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,040 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:39:54,040 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:39:54,040 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,040 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,041 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:39:54,041 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:39:54,041 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,042 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,042 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,042 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,042 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,043 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,043 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:39:54,043 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-30 12:39:54,044 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,044 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,044 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:39:54,044 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-30 12:39:54,045 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,045 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,045 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:39:54,045 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-30 12:39:54,046 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,046 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-30 12:39:54,046 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,047 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,047 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,047 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,047 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,048 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,048 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,048 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,049 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,049 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,049 environment.py:93 INFO Environment variable LDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 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-L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GSL/2.7-GCC-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Graphviz/5.0.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ICU/71.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/snakemake/7.20.0-foss-2022a/lib64 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-L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,050 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scvi-tools/0.19.0-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/igraph/0.10.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/pydot/1.4.2-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib 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-L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/R/4.2.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-30 12:39:54,050 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,050 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,050 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,051 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,051 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:39:54,051 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-30 12:39:54,052 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:39:54,052 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-30 12:39:54,052 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,052 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,053 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,053 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,053 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,054 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,054 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,054 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,054 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:39:54,055 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-30 12:39:54,055 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,055 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-30 12:39:54,056 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:39:54,056 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-30 12:39:54,056 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:39:54,057 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:39:54,057 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:39:54,057 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-30 12:39:54,057 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-30 12:39:54,058 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-30 12:39:54,058 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:39:54,058 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-30 12:39:54,059 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:39:54,059 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-30 12:39:54,059 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:39:54,059 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-30 12:39:54,060 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-30 12:39:54,060 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-30 12:39:54,060 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,061 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-30 12:39:54,061 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:39:54,061 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-30 12:39:54,061 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:39:54,062 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-30 12:39:54,062 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:39:54,062 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-30 12:39:54,063 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:39:54,063 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-30 12:39:54,063 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:39:54,063 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-30 12:39:54,064 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,064 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,064 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,065 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-30 12:39:54,065 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:39:54,065 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-30 12:39:54,065 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:39:54,066 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-30 12:39:54,066 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,066 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-30 12:39:54,067 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:39:54,067 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-30 12:39:54,067 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:39:54,067 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-30 12:39:54,068 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,068 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-30 12:39:54,068 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,069 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-30 12:39:54,069 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,069 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-30 12:39:54,069 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,070 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-30 12:39:54,103 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Sanity check failed: extensions sanity check failed for 1 extensions: scib-pipeline -failing sanity check for 'scib-pipeline' extension: command "python -c "import scib_pipeline"" failed; output: -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module named 'scib_pipeline', (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:3590 in _sanity_check_step) -== 2023-01-30 12:39:54,103 build_log.py:267 INFO ... (took 7 mins 30 secs) -== 2023-01-30 12:39:54,110 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock... -== 2023-01-30 12:39:54,113 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock successfully removed. -== 2023-01-30 12:39:54,113 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_scib-pipeline_0.2.0-foss-2022a.lock -== 2023-01-30 12:39:54,114 easyblock.py:4208 WARNING build failed (first 300 chars): Sanity check failed: extensions sanity check failed for 1 extensions: scib-pipeline -failing sanity check for 'scib-pipeline' extension: command "python -c "import scib_pipeline"" failed; output: -Traceback (most recent call last): - File "", line 1, in -ModuleNotFoundError: No module -== 2023-01-30 12:39:54,115 easyblock.py:328 INFO Closing log for application name scib-pipeline version 0.2.0 diff --git a/33_scib_pipeline/old_logz/easybuild-trvaep-0.1.0-20230124.163629.RitTz.log b/33_scib_pipeline/old_logz/easybuild-trvaep-0.1.0-20230124.163629.RitTz.log deleted file mode 100644 index 7b1241d9..00000000 --- a/33_scib_pipeline/old_logz/easybuild-trvaep-0.1.0-20230124.163629.RitTz.log +++ /dev/null @@ -1,1278 +0,0 @@ -== 2023-01-24 16:36:29,533 easyblock.py:313 INFO This is EasyBuild 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 (framework: 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83, easyblocks: 4.7.1.dev0-r76bc82f7c69234af3245ab952ece663a9c833702) on host node3702.slaking.os. -== 2023-01-24 16:36:29,533 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) -== 2023-01-24 16:36:29,533 easyblock.py:1040 INFO Build dir set to /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a -== 2023-01-24 16:36:29,534 easyblock.py:1097 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a -== 2023-01-24 16:36:29,534 easyblock.py:1102 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-24 16:36:29,534 easyblock.py:288 INFO Init completed for application name trvaep version 0.1.0 -== 2023-01-24 16:36:29,535 pythonbundle.py:75 INFO Detection of downloaded extension dependencies is enabled -== 2023-01-24 16:36:29,535 pythonbundle.py:79 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/t/trvaep'], 'options': {}} -== 2023-01-24 16:36:29,536 easyblock.py:4151 INFO Obtained application instance of for trvaep (easyblock: PythonBundle) -== 2023-01-24 16:36:29,536 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:29,537 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:29,537 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:29,538 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', github_account='trvaep', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:29,539 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' -== 2023-01-24 16:36:29,541 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986 (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:29,542 easyblock.py:4405 INFO Dumped easyconfig instance to /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/trvaep-0.1.0-foss-2022a.eb -== 2023-01-24 16:36:29,544 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/easyblocks (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:29,558 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/easyblocks/bundle.py -== 2023-01-24 16:36:29,559 easyblock.py:4385 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/easyblocks -== 2023-01-24 16:36:29,575 filetools.py:2431 INFO /user/gent/438/vsc43810/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/easyblocks/pythonbundle.py -== 2023-01-24 16:36:29,575 easyblock.py:4385 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc43810/eb-i5ty__zv/reprod_20230124163629_2714986/easyblocks -== 2023-01-24 16:36:29,577 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1 -== 2023-01-24 16:36:29,579 build_log.py:267 INFO building and installing trvaep/0.1.0-foss-2022a... -== 2023-01-24 16:36:29,593 filetools.py:2011 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock does not exist -== 2023-01-24 16:36:29,593 filetools.py:1952 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock... -== 2023-01-24 16:36:29,593 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:29,595 filetools.py:1961 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock -== 2023-01-24 16:36:29,595 build_log.py:267 INFO fetching files... -== 2023-01-24 16:36:29,601 easyblock.py:3877 INFO Starting fetch step -== 2023-01-24 16:36:29,601 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:29,602 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:29,602 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:29,603 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:29,603 easyblock.py:3885 INFO Running method fetch_step part of step fetch -== 2023-01-24 16:36:29,603 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version -== 2023-01-24 16:36:29,604 easyblock.py:2327 INFO no sources provided -== 2023-01-24 16:36:29,604 easyblock.py:2342 INFO no patches provided -== 2023-01-24 16:36:29,605 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for get_version-3.5.4.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-24 16:36:29,605 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-24 16:36:29,606 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-24 16:36:29,606 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-24 16:36:29,619 filetools.py:1918 INFO Creating directory /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:29,988 filetools.py:821 INFO File size for https://pypi.python.org/simple/get-version: 11663 -== 2023-01-24 16:36:29,989 filetools.py:271 INFO Not showing progress bar for downloading small file (size 11663) -== 2023-01-24 16:36:29,992 filetools.py:828 INFO Downloaded file get_version_urls.html from url https://pypi.python.org/simple/get-version to /tmp/vsc43810/eb-i5ty__zv/tmplje_gl20/get_version_urls.html -== 2023-01-24 16:36:29,993 filetools.py:860 INFO Successful download of file get_version_urls.html from url https://pypi.python.org/simple/get-version to path /tmp/vsc43810/eb-i5ty__zv/tmplje_gl20/get_version_urls.html -== 2023-01-24 16:36:30,005 filetools.py:1918 INFO Creating directory /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:30,518 filetools.py:821 INFO File size for https://pypi.python.org/packages/02/fd/b212504343cdd6a15d3cf00c02f8e1aaf2b3ce0223736a3b1d239b4367e6/get_version-3.5.4.tar.gz: 19499 -== 2023-01-24 16:36:30,518 filetools.py:271 INFO Not showing progress bar for downloading small file (size 19499) -== 2023-01-24 16:36:30,523 filetools.py:828 INFO Downloaded file get_version-3.5.4.tar.gz from url https://pypi.python.org/packages/02/fd/b212504343cdd6a15d3cf00c02f8e1aaf2b3ce0223736a3b1d239b4367e6/get_version-3.5.4.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/get_version-3.5.4.tar.gz -== 2023-01-24 16:36:30,523 filetools.py:860 INFO Successful download of file get_version-3.5.4.tar.gz from url https://pypi.python.org/packages/02/fd/b212504343cdd6a15d3cf00c02f8e1aaf2b3ce0223736a3b1d239b4367e6/get_version-3.5.4.tar.gz to path /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/get_version-3.5.4.tar.gz -== 2023-01-24 16:36:30,529 easyblock.py:939 INFO Successfully downloaded source file get_version-3.5.4.tar.gz from https://pypi.python.org/packages/02/fd/b212504343cdd6a15d3cf00c02f8e1aaf2b3ce0223736a3b1d239b4367e6/get_version-3.5.4.tar.gz -== 2023-01-24 16:36:30,530 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/get_version-3.5.4.tar.gz: 164c51221bd5aa2281c59c68d48a05a4 -== 2023-01-24 16:36:30,531 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/get_version-3.5.4.tar.gz: 5901c846518d55d52c1f6f037f5d2433952b46bbf36e38c52f064ae836556343 -== 2023-01-24 16:36:30,531 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-24 16:36:30,531 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-24 16:36:30,532 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-24 16:36:30,532 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-24 16:36:30,973 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Couldn't find file checksums.json anywhere, and downloading it is disabled... Paths attempted (in order): /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/t/trvaep/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/trvaep/checksums.json, /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/t/trvaep/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/trvaep/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/t/trvaep/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/trvaep/checksums.json, /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/trvaep/checksums.json, /data/gent/vo/001/gvo00117/easybuild/sources/checksums.json, /apps/gent/sources/t/trvaep/checksums.json, /apps/gent/sources/trvaep/checksums.json, /apps/gent/sources/checksums.json (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:870 in obtain_file) -== 2023-01-24 16:36:30,973 easyblock.py:685 INFO Checksum for extension source get_version-3.5.4.tar.gz verified -== 2023-01-24 16:36:30,974 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-24 16:36:30,974 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for trvaep-0.1.0.tar.gz: /kyukon/home/gent/438/vsc43810/vsc-software-stack/33_scib_pipeline -== 2023-01-24 16:36:30,975 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/438/vsc43810/easybuild/easybuild-framework/eb -== 2023-01-24 16:36:30,975 tools.py:289 INFO Not considering /user/gent/438/vsc43810/easybuild (no easybuild/easyconfigs subdir found) -== 2023-01-24 16:36:30,975 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/438/vsc43810/easybuild (via resolved path to 'eb')... -== 2023-01-24 16:36:31,319 filetools.py:821 INFO File size for https://pypi.python.org/simple/trvaep: 5366 -== 2023-01-24 16:36:31,319 filetools.py:271 INFO Not showing progress bar for downloading small file (size 5366) -== 2023-01-24 16:36:31,322 filetools.py:828 INFO Downloaded file trvaep_urls.html from url https://pypi.python.org/simple/trvaep to /tmp/vsc43810/eb-i5ty__zv/tmp02pebnjs/trvaep_urls.html -== 2023-01-24 16:36:31,322 filetools.py:860 INFO Successful download of file trvaep_urls.html from url https://pypi.python.org/simple/trvaep to path /tmp/vsc43810/eb-i5ty__zv/tmp02pebnjs/trvaep_urls.html -== 2023-01-24 16:36:31,544 filetools.py:821 INFO File size for https://pypi.python.org/packages/df/58/b2148c732e76d9690d962214a1d9ff7e6457955da4ad2cb5b9cda5dff7c9/trvaep-0.1.0.tar.gz: 1032954 -== 2023-01-24 16:36:31,545 filetools.py:271 INFO Not showing progress bar for downloading small file (size 1032954) -== 2023-01-24 16:36:31,566 filetools.py:828 INFO Downloaded file trvaep-0.1.0.tar.gz from url https://pypi.python.org/packages/df/58/b2148c732e76d9690d962214a1d9ff7e6457955da4ad2cb5b9cda5dff7c9/trvaep-0.1.0.tar.gz to /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/trvaep-0.1.0.tar.gz -== 2023-01-24 16:36:31,566 filetools.py:860 INFO Successful download of file trvaep-0.1.0.tar.gz from url https://pypi.python.org/packages/df/58/b2148c732e76d9690d962214a1d9ff7e6457955da4ad2cb5b9cda5dff7c9/trvaep-0.1.0.tar.gz to path /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/trvaep-0.1.0.tar.gz -== 2023-01-24 16:36:31,578 easyblock.py:939 INFO Successfully downloaded source file trvaep-0.1.0.tar.gz from https://pypi.python.org/packages/df/58/b2148c732e76d9690d962214a1d9ff7e6457955da4ad2cb5b9cda5dff7c9/trvaep-0.1.0.tar.gz -== 2023-01-24 16:36:31,584 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/trvaep-0.1.0.tar.gz: df09bb666d1db2ad1190f3e718586a9f -== 2023-01-24 16:36:31,593 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/trvaep-0.1.0.tar.gz: e4ee8e823e67e4f11b23cdf408d900f7aba9f31449eeeb54e5bbc8aa84dfc811 -== 2023-01-24 16:36:31,593 easyblock.py:685 INFO Checksum for extension source trvaep-0.1.0.tar.gz verified -== 2023-01-24 16:36:31,593 easyblock.py:532 INFO Fetched extension patches: [] -== 2023-01-24 16:36:31,594 easyblock.py:2387 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/trvaep', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/ai/trvaep'] -== 2023-01-24 16:36:31,594 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:31,596 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:31,598 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/ai/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:31,614 build_log.py:267 INFO ... (took 2 secs) -== 2023-01-24 16:36:31,620 build_log.py:267 INFO creating build dir, resetting environment... -== 2023-01-24 16:36:31,626 easyblock.py:3877 INFO Starting ready step -== 2023-01-24 16:36:31,626 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:31,627 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:31,627 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:31,628 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:31,628 easyblock.py:3885 INFO Running method check_readiness_step part of step ready -== 2023-01-24 16:36:31,638 run.py:236 INFO running cmd: ulimit -u -== 2023-01-24 16:36:31,647 easyblock.py:2196 INFO Setting parallelism: 8 -== 2023-01-24 16:36:31,750 easyblock.py:2248 WARNING Loaded modules detected: ['cluster/slaking'] -== 2023-01-24 16:36:31,751 easyblock.py:3885 INFO Running method make_builddir part of step ready -== 2023-01-24 16:36:31,751 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:36:31,759 easyblock.py:3885 INFO Running method reset_env part of step ready -== 2023-01-24 16:36:31,760 easyblock.py:3885 INFO Running method handle_iterate_opts part of step ready -== 2023-01-24 16:36:31,761 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:31,761 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:31,762 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:31,762 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:31,763 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:36:31,769 build_log.py:267 INFO unpacking... -== 2023-01-24 16:36:31,775 easyblock.py:3877 INFO Starting source step -== 2023-01-24 16:36:31,775 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:31,776 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:31,776 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:31,777 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:31,777 easyblock.py:3885 INFO Running method checksum_step part of step source -== 2023-01-24 16:36:31,777 easyblock.py:3885 INFO Running method extract_step part of step source -== 2023-01-24 16:36:31,778 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:36:31,783 build_log.py:267 INFO patching... -== 2023-01-24 16:36:31,789 easyblock.py:3877 INFO Starting patch step -== 2023-01-24 16:36:31,790 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:31,790 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:31,790 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:31,791 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:31,791 easyblock.py:3885 INFO Running method patch_step part of step patch -== 2023-01-24 16:36:31,791 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:36:31,797 build_log.py:267 INFO preparing... -== 2023-01-24 16:36:31,803 easyblock.py:3877 INFO Starting prepare step -== 2023-01-24 16:36:31,804 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:36:31,804 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:36:31,805 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:36:31,805 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:36:31,805 easyblock.py:3885 INFO Running method prepare_step part of step prepare -== 2023-01-24 16:36:31,808 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... -== 2023-01-24 16:36:31,808 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) -== 2023-01-24 16:36:31,809 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True -== 2023-01-24 16:36:31,809 modules.py:628 INFO Checking whether PyTorch/1.12.0-foss-2022a exists... -== 2023-01-24 16:36:31,809 modules.py:633 INFO Module PyTorch/1.12.0-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,809 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-foss-2022a module: True -== 2023-01-24 16:36:31,809 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... -== 2023-01-24 16:36:31,810 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,810 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True -== 2023-01-24 16:36:31,810 modules.py:628 INFO Checking whether Seaborn/0.12.1-foss-2022a exists... -== 2023-01-24 16:36:31,810 modules.py:633 INFO Module Seaborn/0.12.1-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,811 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-foss-2022a module: True -== 2023-01-24 16:36:31,811 modules.py:628 INFO Checking whether scanpy/1.9.1-foss-2022a exists... -== 2023-01-24 16:36:31,811 modules.py:633 INFO Module scanpy/1.9.1-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,811 modules.py:656 INFO Result for existence check of scanpy/1.9.1-foss-2022a module: True -== 2023-01-24 16:36:31,811 modules.py:628 INFO Checking whether adjustText/0.7.3-foss-2022a exists... -== 2023-01-24 16:36:31,812 modules.py:633 INFO Module adjustText/0.7.3-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,812 modules.py:656 INFO Result for existence check of adjustText/0.7.3-foss-2022a module: True -== 2023-01-24 16:36:31,812 modules.py:628 INFO Checking whether torchvision/0.13.1-foss-2022a exists... -== 2023-01-24 16:36:31,812 modules.py:633 INFO Module torchvision/0.13.1-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,813 modules.py:656 INFO Result for existence check of torchvision/0.13.1-foss-2022a module: True -== 2023-01-24 16:36:31,813 modules.py:628 INFO Checking whether matplotlib/3.5.2-foss-2022a exists... -== 2023-01-24 16:36:31,813 modules.py:633 INFO Module matplotlib/3.5.2-foss-2022a exists (found in list of available modules) -== 2023-01-24 16:36:31,813 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-foss-2022a module: True -== 2023-01-24 16:36:31,814 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-24 16:36:31,814 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-24 16:36:36,442 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-24 16:36:45,766 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib') -== 2023-01-24 16:36:51,092 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib') -== 2023-01-24 16:36:55,852 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib') -== 2023-01-24 16:37:00,782 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages/torch/lib:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/MPFR/4.1.0-GCCcore-11.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/lib:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/lib') -== 2023-01-24 16:37:07,288 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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-== 2023-01-24 16:37:24,244 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-24 16:37:24,245 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-24 16:37:24,245 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-24 16:37:24,249 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-24 16:37:24,254 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-24 16:37:24,293 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-24 16:37:24,313 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/include was not found -== 2023-01-24 16:37:24,318 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/include was not found -== 2023-01-24 16:37:24,321 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/include was not found -== 2023-01-24 16:37:24,323 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/include was not found -== 2023-01-24 16:37:24,327 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/include was not found -== 2023-01-24 16:37:24,331 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/include was not found -== 2023-01-24 16:37:24,333 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/include was not found -== 2023-01-24 16:37:24,342 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,342 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,343 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,343 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,343 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,343 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,344 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,344 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,345 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,345 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,345 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,345 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,346 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,346 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,346 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,346 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,347 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,347 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,347 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,347 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,348 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,348 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,348 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-24 16:37:24,348 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-24 16:37:24,349 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,349 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,349 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,349 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,350 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-24 16:37:24,350 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-24 16:37:24,350 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,350 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,351 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,351 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,351 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,351 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,352 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,352 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,352 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-24 16:37:24,352 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-24 16:37:24,353 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,353 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,353 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,353 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,354 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,354 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,354 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,354 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,355 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:24,355 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:24,355 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,355 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,356 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:24,356 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:24,356 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,356 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,357 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,357 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,357 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,357 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,358 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:24,358 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:24,358 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,358 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,359 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:24,359 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:24,359 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,359 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,360 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-24 16:37:24,360 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-24 16:37:24,360 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,360 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:24,361 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,361 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,361 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,361 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,361 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,362 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,362 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,362 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,362 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,363 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,363 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,363 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-24 16:37:24,364 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,364 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,364 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,364 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,365 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-24 16:37:24,365 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-24 16:37:24,365 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-24 16:37:24,365 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-24 16:37:24,365 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,366 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,366 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,366 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,366 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,367 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,367 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,367 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,367 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-24 16:37:24,368 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-24 16:37:24,368 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,368 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:24,368 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-24 16:37:24,369 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-24 16:37:24,369 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:24,369 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:24,369 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:24,370 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:24,370 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-24 16:37:24,370 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-24 16:37:24,370 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-24 16:37:24,371 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-24 16:37:24,371 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-24 16:37:24,371 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-24 16:37:24,371 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-24 16:37:24,372 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-24 16:37:24,372 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-24 16:37:24,372 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-24 16:37:24,372 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,373 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:24,373 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-24 16:37:24,373 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-24 16:37:24,373 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-24 16:37:24,374 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-24 16:37:24,374 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-24 16:37:24,374 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-24 16:37:24,374 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-24 16:37:24,375 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-24 16:37:24,375 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-24 16:37:24,375 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-24 16:37:24,375 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,376 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,376 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,376 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:24,376 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-24 16:37:24,377 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-24 16:37:24,377 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-24 16:37:24,377 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-24 16:37:24,377 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,377 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-24 16:37:24,378 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-24 16:37:24,378 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-24 16:37:24,378 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-24 16:37:24,378 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-24 16:37:24,379 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,379 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:24,379 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,379 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:24,380 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,380 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:24,380 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,380 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:24,381 easyblock.py:2080 INFO Using /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/ as start dir -== 2023-01-24 16:37:24,385 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-24 16:37:24,386 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-24 16:37:30,125 run.py:236 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-24 16:37:30,737 build_log.py:267 INFO ... (took 58 secs) -== 2023-01-24 16:37:30,741 build_log.py:267 INFO configuring... -== 2023-01-24 16:37:30,744 easyblock.py:3877 INFO Starting configure step -== 2023-01-24 16:37:30,744 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:30,744 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:30,744 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:30,745 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:30,745 easyblock.py:3885 INFO Running method configure_step part of step configure -== 2023-01-24 16:37:30,745 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:37:30,748 build_log.py:267 INFO building... -== 2023-01-24 16:37:30,751 easyblock.py:3877 INFO Starting build step -== 2023-01-24 16:37:30,751 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:30,751 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:30,751 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:30,751 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:30,752 easyblock.py:3885 INFO Running method build_step part of step build -== 2023-01-24 16:37:30,752 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:37:30,754 build_log.py:267 INFO testing... -== 2023-01-24 16:37:30,757 easyblock.py:3877 INFO Starting test step -== 2023-01-24 16:37:30,757 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:30,758 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:30,758 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:30,758 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:30,758 easyblock.py:3885 INFO Running method test_step part of step test -== 2023-01-24 16:37:30,758 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:37:30,761 build_log.py:267 INFO installing... -== 2023-01-24 16:37:30,764 easyblock.py:3877 INFO Starting install step -== 2023-01-24 16:37:30,764 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:30,765 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:30,765 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:30,765 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:30,765 easyblock.py:3885 INFO Running method stage_install_step part of step install -== 2023-01-24 16:37:30,765 easyblock.py:3885 INFO Running method make_installdir part of step install -== 2023-01-24 16:37:30,767 easyblock.py:1122 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a -== 2023-01-24 16:37:30,768 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a successfully removed. -== 2023-01-24 16:37:30,768 easyblock.py:1130 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a -== 2023-01-24 16:37:30,768 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:37:30,769 easyblock.py:3885 INFO Running method install_step part of step install -== 2023-01-24 16:37:30,769 build_log.py:267 INFO ... (took < 1 sec) -== 2023-01-24 16:37:30,772 build_log.py:267 INFO taking care of extensions... -== 2023-01-24 16:37:30,775 easyblock.py:3877 INFO Starting extensions step -== 2023-01-24 16:37:30,775 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:30,775 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:30,775 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:30,775 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', builddir='/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a', github_account='trvaep', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a', module_name='trvaep/0.1.0-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', parallel='8', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:30,775 easyblock.py:3885 INFO Running method extensions_step part of step extensions -== 2023-01-24 16:37:30,776 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-24 16:37:30,776 easyblock.py:1671 INFO Loading fake module (trvaep/0.1.0-foss-2022a) -== 2023-01-24 16:37:31,417 easyblock.py:1588 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] -== 2023-01-24 16:37:31,418 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:37:31,419 easyblock.py:3693 INFO Module file /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all/trvaep/0.1.0-foss-2022a.lua written: help([==[ - -Description -=========== -Pipeline for benchmarking atlas-level single-cell integration. - - -More information -================ - - Homepage: https://github.com/theislab/trvaep - - -Included extensions -=================== -get_version-3.5.4, trvaep-0.1.0 -]==]) - -whatis([==[Description: Pipeline for benchmarking atlas-level single-cell integration.]==]) -whatis([==[Homepage: https://github.com/theislab/trvaep]==]) -whatis([==[URL: https://github.com/theislab/trvaep]==]) -whatis([==[Extensions: get_version-3.5.4, trvaep-0.1.0]==]) - -local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a" - -conflict("trvaep") - -if not ( isloaded("foss/2022a") ) then - load("foss/2022a") -end - -if not ( isloaded("Python/3.10.4-GCCcore-11.3.0") ) then - load("Python/3.10.4-GCCcore-11.3.0") -end - -if not ( isloaded("PyTorch/1.12.0-foss-2022a") ) then - load("PyTorch/1.12.0-foss-2022a") -end - -if not ( isloaded("SciPy-bundle/2022.05-foss-2022a") ) then - load("SciPy-bundle/2022.05-foss-2022a") -end - -if not ( isloaded("Seaborn/0.12.1-foss-2022a") ) then - load("Seaborn/0.12.1-foss-2022a") -end - -if not ( isloaded("scanpy/1.9.1-foss-2022a") ) then - load("scanpy/1.9.1-foss-2022a") -end - -if not ( isloaded("adjustText/0.7.3-foss-2022a") ) then - load("adjustText/0.7.3-foss-2022a") -end - -if not ( isloaded("torchvision/0.13.1-foss-2022a") ) then - load("torchvision/0.13.1-foss-2022a") -end - -if not ( isloaded("matplotlib/3.5.2-foss-2022a") ) then - load("matplotlib/3.5.2-foss-2022a") -end - -setenv("EBROOTTRVAEP", root) -setenv("EBVERSIONTRVAEP", "0.1.0") -setenv("EBDEVELTRVAEP", pathJoin(root, "easybuild/trvaep-0.1.0-foss-2022a-easybuild-devel")) - -prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.10/site-packages")) --- Built with EasyBuild version 4.7.1.dev0-re9b7cea730c4d9ee781648ade877f4fcb8e22e83 -setenv("EBEXTSLISTTRVAEP", "get_version-3.5.4,trvaep-0.1.0") - -== 2023-01-24 16:37:31,420 filetools.py:1918 INFO Creating directory /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/ai/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:37:31,420 easyblock.py:3724 INFO Skipping devel module... -== 2023-01-24 16:37:31,421 filetools.py:339 INFO Symlinked 0.1.0-foss-2022a.lua to /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all/trvaep/default -== 2023-01-24 16:37:31,421 module_generator.py:1489 INFO Module default version file written to point to /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all/trvaep/default -== 2023-01-24 16:37:37,680 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/438/vsc43810/.local/bin:1;/user/gent/438/vsc43810/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/438/vsc43810/.dotnet/tools:1 (previous value: 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-== 2023-01-24 16:37:37,682 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc') -== 2023-01-24 16:37:37,682 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools (previous value: '/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/Clang/13.0.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/elfutils/0.187-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libarchive/3.6.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Z3/4.10.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/GLib/2.72.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/PCRE/8.45-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/gettext/0.21-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/GLPK/5.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/LLVM/14.0.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/HDF5/1.12.2-gompi-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/Qhull/2020.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Tk/8.6.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/bin:/apps/gent/RHEL8/haswell-ib/software/LibTIFF/4.3.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libdeflate/1.10-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/zstd/1.5.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/lz4/1.9.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/gzip/1.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/jbigkit/2.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FFmpeg/4.4.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FriBidi/1.0.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/X11/20220504-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/fontconfig/2.14.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/sbin:/apps/gent/RHEL8/haswell-ib/software/util-linux/2.38-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/freetype/2.12.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Brotli/1.0.9-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libpng/1.6.37-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/expat/2.4.8-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/x265/3.5-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/LAME/3.100-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/x264/20220620-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/NASM/2.15.05-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/protobuf/3.19.4-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Ninja/1.10.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/Tcl/8.6.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/UCC/1.0.0-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/PMIx/4.1.2-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libfabric/1.15.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/UCX/1.12.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libevent/2.1.12-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/sbin:/apps/gent/RHEL8/haswell-ib/software/hwloc/2.7.1-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/libxml2/2.9.13-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/numactl/2.0.14-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/bin:/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin:/usr/libexec/jobcli:/user/gent/438/vsc43810/.local/bin:/user/gent/438/vsc43810/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/438/vsc43810/.dotnet/tools') -== 2023-01-24 16:37:37,682 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/slaking.lua (previous value: '/etc/modulefiles/vsc/cluster/slaking.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCCcore/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zlib/1.2.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/binutils/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GCC/11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/numactl/2.0.14-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/XZ/5.2.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libxml2/2.9.13-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpciaccess/0.16-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/hwloc/2.7.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenSSL/1.1.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libevent/2.1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCX/1.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libfabric/1.15.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PMIx/4.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/UCC/1.0.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenMPI/4.1.4-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/OpenBLAS/0.3.20-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FlexiBLAS/3.2.0-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW/3.3.10-GCC-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gompi/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFTW.MPI/3.3.10-gompi-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ScaLAPACK/2.2.0-gompi-2022a-fb.lua:/apps/gent/RHEL8/haswell-ib/modules/all/foss/2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/bzip2/1.0.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/ncurses/6.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libreadline/8.1.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tcl/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SQLite/3.38.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GMP/6.2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libffi/3.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Python/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/protobuf/3.19.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/protobuf-python/3.19.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pybind11/2.9.2-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/libyaml/0.2.5-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyYAML/6.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/MPFR/4.1.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/NASM/2.15.05-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/x264/20220620-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LAME/3.100-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/x265/3.5-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/expat/2.4.8-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libpng/1.6.37-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Brotli/1.0.9-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/freetype/2.12.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/util-linux/2.38-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/fontconfig/2.14.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/xorg-macros/1.19.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/X11/20220504-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FriBidi/1.0.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/FFmpeg/4.4.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libjpeg-turbo/2.1.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/jbigkit/2.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gzip/1.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/lz4/1.9.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/zstd/1.5.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libdeflate/1.10-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LibTIFF/4.3.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow/9.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/expecttest/0.1.3-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PyTorch/1.12.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/SciPy-bundle/2022.05-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tk/8.6.12-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Tkinter/3.10.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Qhull/2020.2-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Seaborn/0.12.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Szip/2.1.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/HDF5/1.12.2-gompi-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/h5py/3.7.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/networkx/2.8.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LLVM/14.0.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/numba/0.56.4-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/LZO/2.10-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/Blosc/1.21.3-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scikit-build/0.15.0-GCCcore-11.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/PyTables/3.8.0-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/statsmodels/0.13.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/scikit-learn/1.1.2-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/tqdm/4.64.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLPK/5.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Eigen/3.4.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/arpack-ng/3.8.0-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/pixman/0.40.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/gettext/0.21-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PCRE/8.45-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/GLib/2.72.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/cairo/1.17.4-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/PyCairo/1.21.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/libarchive/3.6.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/elfutils/0.187-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Clang/13.0.1-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/python-igraph/0.10.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/leidenalg/0.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/umap-learn/0.5.3-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/scanpy/1.9.1-foss-2022a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all/adjustText/0.7.3-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/Pillow-SIMD/9.2.0-GCCcore-11.3.0.lua:/apps/gent/RHEL8/haswell-ib/modules/all/torchvision/0.13.1-foss-2022a.lua:/apps/gent/RHEL8/haswell-ib/modules/all/matplotlib/3.5.2-foss-2022a.lua') -== 2023-01-24 16:37:37,690 modules.py:474 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc43810/eb-i5ty__zv/tmpnlm_zkbr/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all:/apps/gent/RHEL8/haswell-ib/modules/all:/etc/modulefiles/vsc -== 2023-01-24 16:37:46,015 easyblock.py:2838 INFO Installing extensions -== 2023-01-24 16:37:46,029 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-24 16:37:46,030 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-24 16:37:46,030 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-24 16:37:46,031 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-24 16:37:46,031 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-24 16:37:46,033 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-24 16:37:46,033 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-24 16:37:46,034 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-24 16:37:46,035 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-24 16:37:46,035 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'trvaep') -== 2023-01-24 16:37:46,035 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'trvaep' -version = '0.1.0' - -homepage = 'https://github.com/theislab/trvaep' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), # - ('PyTorch', '1.12.0'), # - ('SciPy-bundle', '2022.05'), # - ('Seaborn', '0.12.1'), # - ('scanpy', '1.9.1'), # - ('adjustText', '0.7.3'), # - ('torchvision', '0.13.1'), # - ('matplotlib', '3.5.2'), # -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('get_version', '3.5.4'), - (name, version, { - }), -] - -moduleclass = 'ai' - -== 2023-01-24 16:37:46,036 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-24 16:37:46,036 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('scanpy', '1.9.1'), ('adjustText', '0.7.3'), ('torchvision', '0.13.1'), ('matplotlib', '3.5.2')] (type: ) -== 2023-01-24 16:37:46,036 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-24 16:37:46,036 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-24 16:37:46,036 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('get_version', '3.5.4'), ('trvaep', '0.1.0', {})] (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/trvaep (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value ai (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter name: value trvaep (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.1.0 (type: ) -== 2023-01-24 16:37:46,037 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-24 16:37:46,038 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:46,042 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:46,043 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:46,043 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', github_account='trvaep', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:52,938 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-24 16:37:52,938 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,941 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-24 16:37:52,941 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-24 16:37:52,942 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,942 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-24 16:37:52,942 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-24 16:37:52,942 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,943 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-24 16:37:52,943 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,943 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,943 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,943 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,946 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,947 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,947 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,947 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-24 16:37:52,948 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-24 16:37:52,948 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,950 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-24 16:37:52,950 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-24 16:37:52,950 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,951 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-24 16:37:52,951 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,951 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,951 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,952 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,952 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,952 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,952 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,953 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-24 16:37:52,953 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,955 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-24 16:37:52,955 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-24 16:37:52,955 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,956 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-24 16:37:52,956 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,956 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,956 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,956 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,956 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,957 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,957 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,958 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-24 16:37:52,958 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,958 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-24 16:37:52,959 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-24 16:37:52,959 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,959 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-24 16:37:52,959 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,959 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,960 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,960 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,960 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,960 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,960 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,962 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-24 16:37:52,962 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,964 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-24 16:37:52,964 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-24 16:37:52,964 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,964 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-24 16:37:52,965 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,965 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,965 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,965 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,965 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,966 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,966 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,967 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,968 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,968 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,968 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,968 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,969 modules.py:628 INFO Checking whether adjustText/0.7.3-gompi-2022a exists... -== 2023-01-24 16:37:52,969 modules.py:649 INFO Module adjustText/0.7.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,970 modules.py:656 INFO Result for existence check of adjustText/0.7.3-gompi-2022a module: False -== 2023-01-24 16:37:52,970 modules.py:628 INFO Checking whether adjustText/0.7.3-gfbf-2022a exists... -== 2023-01-24 16:37:52,970 modules.py:649 INFO Module adjustText/0.7.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,971 modules.py:656 INFO Result for existence check of adjustText/0.7.3-gfbf-2022a module: False -== 2023-01-24 16:37:52,971 modules.py:628 INFO Checking whether adjustText/0.7.3-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,971 modules.py:649 INFO Module adjustText/0.7.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,971 modules.py:656 INFO Result for existence check of adjustText/0.7.3-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,972 modules.py:628 INFO Checking whether adjustText/0.7.3-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,972 modules.py:649 INFO Module adjustText/0.7.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,972 modules.py:656 INFO Result for existence check of adjustText/0.7.3-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,972 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,974 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,975 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:52,975 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'adjustText', 'version': '0.7.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,976 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-24 16:37:52,976 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,977 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-24 16:37:52,977 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-24 16:37:52,977 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,978 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-24 16:37:52,978 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,978 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,978 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,979 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,979 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,979 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,979 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,980 modules.py:628 INFO Checking whether matplotlib/3.5.2-gompi-2022a exists... -== 2023-01-24 16:37:52,980 modules.py:649 INFO Module matplotlib/3.5.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,981 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-gompi-2022a module: False -== 2023-01-24 16:37:52,981 modules.py:628 INFO Checking whether matplotlib/3.5.2-gfbf-2022a exists... -== 2023-01-24 16:37:52,982 modules.py:649 INFO Module matplotlib/3.5.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,982 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-gfbf-2022a module: False -== 2023-01-24 16:37:52,982 modules.py:628 INFO Checking whether matplotlib/3.5.2-GCC-11.3.0 exists... -== 2023-01-24 16:37:52,982 modules.py:649 INFO Module matplotlib/3.5.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,982 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-GCC-11.3.0 module: False -== 2023-01-24 16:37:52,983 modules.py:628 INFO Checking whether matplotlib/3.5.2-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:52,983 modules.py:649 INFO Module matplotlib/3.5.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:52,983 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:52,983 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.5.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:52,986 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'get_version' -== 2023-01-24 16:37:52,986 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-24 16:37:52,986 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-i5ty__zv (previously undefined) -== 2023-01-24 16:37:52,986 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-i5ty__zv as pip cache directory -== 2023-01-24 16:37:52,986 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-24 16:37:53,008 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... -== 2023-01-24 16:37:53,009 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') -== 2023-01-24 16:37:53,009 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') -== 2023-01-24 16:37:53,009 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') -== 2023-01-24 16:37:53,009 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') -== 2023-01-24 16:37:53,012 modules.py:301 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it -== 2023-01-24 16:37:53,012 modules.py:457 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/modules/all -== 2023-01-24 16:37:53,012 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] -== 2023-01-24 16:37:53,013 easyconfig.py:1894 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle -== 2023-01-24 16:37:53,013 easyconfig.py:1941 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'trvaep') -== 2023-01-24 16:37:53,014 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: # author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'trvaep' -version = '0.1.0' - -homepage = 'https://github.com/theislab/trvaep' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), # - ('PyTorch', '1.12.0'), # - ('SciPy-bundle', '2022.05'), # - ('Seaborn', '0.12.1'), # - ('scanpy', '1.9.1'), # - ('adjustText', '0.7.3'), # - ('torchvision', '0.13.1'), # - ('matplotlib', '3.5.2'), # -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('get_version', '3.5.4'), - (name, version, { - }), -] - -moduleclass = 'ai' - -== 2023-01-24 16:37:53,014 parser.py:139 INFO Type checking of easyconfig parameter values passed! -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('PyTorch', '1.12.0'), ('SciPy-bundle', '2022.05'), ('Seaborn', '0.12.1'), ('scanpy', '1.9.1'), ('adjustText', '0.7.3'), ('torchvision', '0.13.1'), ('matplotlib', '3.5.2')] (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter description: value Pipeline for benchmarking atlas-level single-cell integration. (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('get_version', '3.5.4'), ('trvaep', '0.1.0', {})] (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/theislab/trvaep (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value ai (type: ) -== 2023-01-24 16:37:53,015 easyconfig.py:686 INFO setting easyconfig parameter name: value trvaep (type: ) -== 2023-01-24 16:37:53,016 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) -== 2023-01-24 16:37:53,016 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: ) -== 2023-01-24 16:37:53,016 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) -== 2023-01-24 16:37:53,016 easyconfig.py:686 INFO setting easyconfig parameter version: value 0.1.0 (type: ) -== 2023-01-24 16:37:53,016 easyconfig.py:747 INFO Parsing dependency specifications... -== 2023-01-24 16:37:53,017 easyconfig.py:1688 INFO Generating template values... -== 2023-01-24 16:37:53,021 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' -== 2023-01-24 16:37:53,021 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) -== 2023-01-24 16:37:53,021 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trvaep', github_account='trvaep', mpi_cmd_prefix='mpirun -n 1', name='trvaep', nameletter='t', nameletterlower='t', namelower='trvaep', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='0.1.0', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='' -== 2023-01-24 16:37:53,023 modules.py:628 INFO Checking whether Python/3.10.4-foss-2022a exists... -== 2023-01-24 16:37:53,023 modules.py:649 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,023 modules.py:656 INFO Result for existence check of Python/3.10.4-foss-2022a module: False -== 2023-01-24 16:37:53,024 modules.py:628 INFO Checking whether Python/3.10.4-gompi-2022a exists... -== 2023-01-24 16:37:53,024 modules.py:649 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,024 modules.py:656 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False -== 2023-01-24 16:37:53,024 modules.py:628 INFO Checking whether Python/3.10.4-gfbf-2022a exists... -== 2023-01-24 16:37:53,024 modules.py:649 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,025 modules.py:656 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False -== 2023-01-24 16:37:53,025 modules.py:628 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,025 modules.py:649 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,026 modules.py:656 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,026 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,027 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,027 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'} -== 2023-01-24 16:37:53,028 modules.py:628 INFO Checking whether PyTorch/1.12.0-gompi-2022a exists... -== 2023-01-24 16:37:53,028 modules.py:649 INFO Module PyTorch/1.12.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,029 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gompi-2022a module: False -== 2023-01-24 16:37:53,029 modules.py:628 INFO Checking whether PyTorch/1.12.0-gfbf-2022a exists... -== 2023-01-24 16:37:53,029 modules.py:649 INFO Module PyTorch/1.12.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,029 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-gfbf-2022a module: False -== 2023-01-24 16:37:53,030 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,030 modules.py:649 INFO Module PyTorch/1.12.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,030 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,030 modules.py:628 INFO Checking whether PyTorch/1.12.0-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,030 modules.py:649 INFO Module PyTorch/1.12.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,031 modules.py:656 INFO Result for existence check of PyTorch/1.12.0-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,031 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyTorch', 'version': '1.12.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,032 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists... -== 2023-01-24 16:37:53,032 modules.py:649 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,033 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False -== 2023-01-24 16:37:53,033 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists... -== 2023-01-24 16:37:53,033 modules.py:649 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False -== 2023-01-24 16:37:53,034 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,034 modules.py:649 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,034 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,035 modules.py:628 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,035 modules.py:649 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,035 modules.py:656 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,035 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,036 modules.py:628 INFO Checking whether Seaborn/0.12.1-gompi-2022a exists... -== 2023-01-24 16:37:53,037 modules.py:649 INFO Module Seaborn/0.12.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,037 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gompi-2022a module: False -== 2023-01-24 16:37:53,037 modules.py:628 INFO Checking whether Seaborn/0.12.1-gfbf-2022a exists... -== 2023-01-24 16:37:53,037 modules.py:649 INFO Module Seaborn/0.12.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,038 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-gfbf-2022a module: False -== 2023-01-24 16:37:53,038 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,038 modules.py:649 INFO Module Seaborn/0.12.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,039 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,039 modules.py:628 INFO Checking whether Seaborn/0.12.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,039 modules.py:649 INFO Module Seaborn/0.12.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,039 modules.py:656 INFO Result for existence check of Seaborn/0.12.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,039 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Seaborn', 'version': '0.12.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,041 modules.py:628 INFO Checking whether scanpy/1.9.1-gompi-2022a exists... -== 2023-01-24 16:37:53,041 modules.py:649 INFO Module scanpy/1.9.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,041 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gompi-2022a module: False -== 2023-01-24 16:37:53,042 modules.py:628 INFO Checking whether scanpy/1.9.1-gfbf-2022a exists... -== 2023-01-24 16:37:53,042 modules.py:649 INFO Module scanpy/1.9.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,042 modules.py:656 INFO Result for existence check of scanpy/1.9.1-gfbf-2022a module: False -== 2023-01-24 16:37:53,042 modules.py:628 INFO Checking whether scanpy/1.9.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,043 modules.py:649 INFO Module scanpy/1.9.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,043 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,043 modules.py:628 INFO Checking whether scanpy/1.9.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,043 modules.py:649 INFO Module scanpy/1.9.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,044 modules.py:656 INFO Result for existence check of scanpy/1.9.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,044 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,044 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,044 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,045 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,045 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scanpy', 'version': '1.9.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,046 modules.py:628 INFO Checking whether adjustText/0.7.3-gompi-2022a exists... -== 2023-01-24 16:37:53,046 modules.py:649 INFO Module adjustText/0.7.3-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,047 modules.py:656 INFO Result for existence check of adjustText/0.7.3-gompi-2022a module: False -== 2023-01-24 16:37:53,047 modules.py:628 INFO Checking whether adjustText/0.7.3-gfbf-2022a exists... -== 2023-01-24 16:37:53,047 modules.py:649 INFO Module adjustText/0.7.3-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,048 modules.py:656 INFO Result for existence check of adjustText/0.7.3-gfbf-2022a module: False -== 2023-01-24 16:37:53,048 modules.py:628 INFO Checking whether adjustText/0.7.3-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,048 modules.py:649 INFO Module adjustText/0.7.3-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,048 modules.py:656 INFO Result for existence check of adjustText/0.7.3-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,049 modules.py:628 INFO Checking whether adjustText/0.7.3-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,049 modules.py:649 INFO Module adjustText/0.7.3-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,049 modules.py:656 INFO Result for existence check of adjustText/0.7.3-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,049 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,050 easyconfig.py:2179 INFO Found loaded index for /user/gent/438/vsc43810/easybuild/easybuild-easyconfigs/easybuild/easyconfigs -== 2023-01-24 16:37:53,051 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'adjustText', 'version': '0.7.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,052 modules.py:628 INFO Checking whether torchvision/0.13.1-gompi-2022a exists... -== 2023-01-24 16:37:53,052 modules.py:649 INFO Module torchvision/0.13.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,052 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gompi-2022a module: False -== 2023-01-24 16:37:53,053 modules.py:628 INFO Checking whether torchvision/0.13.1-gfbf-2022a exists... -== 2023-01-24 16:37:53,053 modules.py:649 INFO Module torchvision/0.13.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,053 modules.py:656 INFO Result for existence check of torchvision/0.13.1-gfbf-2022a module: False -== 2023-01-24 16:37:53,053 modules.py:628 INFO Checking whether torchvision/0.13.1-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,054 modules.py:649 INFO Module torchvision/0.13.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,054 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,054 modules.py:628 INFO Checking whether torchvision/0.13.1-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,054 modules.py:649 INFO Module torchvision/0.13.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,055 modules.py:656 INFO Result for existence check of torchvision/0.13.1-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,055 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'torchvision', 'version': '0.13.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,056 modules.py:628 INFO Checking whether matplotlib/3.5.2-gompi-2022a exists... -== 2023-01-24 16:37:53,056 modules.py:649 INFO Module matplotlib/3.5.2-gompi-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,057 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-gompi-2022a module: False -== 2023-01-24 16:37:53,057 modules.py:628 INFO Checking whether matplotlib/3.5.2-gfbf-2022a exists... -== 2023-01-24 16:37:53,057 modules.py:649 INFO Module matplotlib/3.5.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,058 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-gfbf-2022a module: False -== 2023-01-24 16:37:53,058 modules.py:628 INFO Checking whether matplotlib/3.5.2-GCC-11.3.0 exists... -== 2023-01-24 16:37:53,058 modules.py:649 INFO Module matplotlib/3.5.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,058 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-GCC-11.3.0 module: False -== 2023-01-24 16:37:53,059 modules.py:628 INFO Checking whether matplotlib/3.5.2-GCCcore-11.3.0 exists... -== 2023-01-24 16:37:53,059 modules.py:649 INFO Module matplotlib/3.5.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper -== 2023-01-24 16:37:53,059 modules.py:656 INFO Result for existence check of matplotlib/3.5.2-GCCcore-11.3.0 module: False -== 2023-01-24 16:37:53,059 easyconfig.py:2355 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.5.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} -== 2023-01-24 16:37:53,062 pythonpackage.py:306 INFO Using default value for expected module name (lowercase software name): 'trvaep' -== 2023-01-24 16:37:53,062 pythonpackage.py:338 INFO Using pip with --no-deps option -== 2023-01-24 16:37:53,062 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc43810/eb-i5ty__zv (previous value: '/tmp/vsc43810/eb-i5ty__zv') -== 2023-01-24 16:37:53,062 pythonpackage.py:355 INFO Using /tmp/vsc43810/eb-i5ty__zv as pip cache directory -== 2023-01-24 16:37:53,062 pythonpackage.py:370 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command -== 2023-01-24 16:37:53,766 easyblock.py:1846 INFO Installing extensions sequentially... -== 2023-01-24 16:37:53,767 easyblock.py:1852 INFO Starting extension get_version -== 2023-01-24 16:37:53,767 build_log.py:267 INFO installing extension get_version 3.5.4 (1/2)... -== 2023-01-24 16:37:54,373 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-24 16:37:54,374 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-24 16:37:59,748 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-24 16:37:59,750 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-24 16:37:59,754 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-24 16:37:59,776 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-24 16:37:59,785 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,786 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,787 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,788 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) -== 2023-01-24 16:37:59,789 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,790 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,791 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:59,792 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,793 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,794 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,795 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,796 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,797 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,798 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) -== 2023-01-24 16:37:59,799 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) -== 2023-01-24 16:37:59,800 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) -== 2023-01-24 16:37:59,801 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) -== 2023-01-24 16:37:59,802 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-24 16:37:59,803 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,804 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) -== 2023-01-24 16:37:59,878 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-24 16:37:59,878 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-24 16:37:59,879 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-24 16:38:06,091 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-24 16:38:06,679 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/get_version (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:38:06,686 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/get_version-3.5.4.tar.gz -== 2023-01-24 16:38:06,848 build_log.py:267 INFO configuring... -== 2023-01-24 16:38:06,856 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) -== 2023-01-24 16:38:06,857 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-24 16:38:07,011 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-24 16:38:07,013 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-24 16:38:07,013 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-24 16:38:07,205 build_log.py:267 INFO building... -== 2023-01-24 16:38:07,214 build_log.py:267 INFO testing... -== 2023-01-24 16:38:07,222 build_log.py:267 INFO installing... -== 2023-01-24 16:38:07,229 filetools.py:1918 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:38:07,232 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/torchvision/0.13.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow-SIMD/9.2.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/adjustText/0.7.3-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/umap-learn/0.5.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/leidenalg/0.9.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/python-igraph/0.10.3-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyCairo/1.21.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/tqdm/4.64.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/scikit-learn/1.1.2-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/statsmodels/0.13.1-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyTables/3.8.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scikit-build/0.15.0-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/numba/0.56.4-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/networkx/2.8.4-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/h5py/3.7.0-foss-2022a/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Seaborn/0.12.1-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Tkinter/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/PyTorch/1.12.0-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/expecttest/0.1.3-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib/python3.10/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/PyYAML/6.0-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/pybind11/2.9.2-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/protobuf-python/3.19.4-GCCcore-11.3.0/lib/python3.10/site-packages:/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/easybuild/python') -== 2023-01-24 16:38:07,232 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-24 16:38:07,233 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-24 16:38:07,233 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-24 16:38:13,582 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-24 16:38:13,583 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-24 16:38:13,594 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-24 16:38:19,383 run.py:648 INFO cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/get_version/get_version-3.5.4 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'done' -Building wheels for collected packages: get_version - Building wheel for get_version (pyproject.toml): started - Building wheel for get_version (pyproject.toml): finished with status 'done' - Created wheel for get_version: filename=get_version-3.5.4-py3-none-any.whl size=18331 sha256=b1d2797ea010ffb087315303edef89afb1a19d0e897a350d63db3b928742bb59 - Stored in directory: /tmp/vsc43810/eb-i5ty__zv/pip/wheels/e9/d1/2c/fed804d28ea58dcccefba3fda92afe869c763af70e9a166450 -Successfully built get_version -Installing collected packages: get_version -Successfully installed get_version-3.5.4 - -== 2023-01-24 16:38:19,384 easyblock.py:2891 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env -== 2023-01-24 16:38:19,385 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-24 16:38:19,386 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-24 16:38:19,386 build_log.py:267 INFO ... (took 25 secs) -== 2023-01-24 16:38:19,394 easyblock.py:1852 INFO Starting extension trvaep -== 2023-01-24 16:38:19,395 build_log.py:267 INFO installing extension trvaep 0.1.0 (2/2)... -== 2023-01-24 16:38:20,224 modules.py:628 INFO Checking whether foss/2022a exists... -== 2023-01-24 16:38:20,225 modules.py:636 INFO Module foss/2022a not found in list of available modules, checking via 'module show'... -== 2023-01-24 16:38:20,225 modules.py:656 INFO Result for existence check of foss/2022a module: True -== 2023-01-24 16:38:20,228 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! -== 2023-01-24 16:38:20,232 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. -== 2023-01-24 16:38:20,260 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/include was not found -== 2023-01-24 16:38:20,273 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,273 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,274 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,274 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,274 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,274 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,275 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,275 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,275 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,275 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,276 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,276 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,276 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,276 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,276 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,277 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,277 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,277 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,277 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,278 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,278 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,278 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,278 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,279 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,279 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') -== 2023-01-24 16:38:20,279 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') -== 2023-01-24 16:38:20,279 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,280 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,280 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,280 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include -I/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,280 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') -== 2023-01-24 16:38:20,281 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') -== 2023-01-24 16:38:20,281 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,281 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,281 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,281 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,282 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,282 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,282 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,282 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,283 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,283 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,283 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,283 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,284 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,284 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') -== 2023-01-24 16:38:20,284 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-24 16:38:20,284 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-24 16:38:20,284 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,285 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,285 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-24 16:38:20,285 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-24 16:38:20,285 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-24 16:38:20,286 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-24 16:38:20,286 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-24 16:38:20,286 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-24 16:38:20,286 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-24 16:38:20,287 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-24 16:38:20,287 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-24 16:38:20,287 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/include') -== 2023-01-24 16:38:20,287 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,288 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,288 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-24 16:38:20,288 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') -== 2023-01-24 16:38:20,288 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-24 16:38:20,288 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') -== 2023-01-24 16:38:20,289 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-24 16:38:20,289 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') -== 2023-01-24 16:38:20,289 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-24 16:38:20,289 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') -== 2023-01-24 16:38:20,290 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-24 16:38:20,290 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') -== 2023-01-24 16:38:20,290 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,290 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/include/flexiblas') -== 2023-01-24 16:38:20,291 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,291 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib') -== 2023-01-24 16:38:20,291 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,291 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,292 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,300 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,300 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,301 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,301 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,301 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,301 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-24 16:38:20,302 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib (previous value: '-L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib') -== 2023-01-24 16:38:20,302 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,302 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,302 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,303 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,303 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-24 16:38:20,303 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') -== 2023-01-24 16:38:20,303 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-24 16:38:20,304 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') -== 2023-01-24 16:38:20,304 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,304 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,304 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,305 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,305 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,305 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,305 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,306 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') -== 2023-01-24 16:38:20,306 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-24 16:38:20,306 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') -== 2023-01-24 16:38:20,306 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-24 16:38:20,307 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') -== 2023-01-24 16:38:20,307 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-24 16:38:20,307 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previous value: '-lscalapack -lflexiblas -lpthread -lgfortran') -== 2023-01-24 16:38:20,307 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-24 16:38:20,308 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-24 16:38:20,308 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-24 16:38:20,308 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') -== 2023-01-24 16:38:20,308 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') -== 2023-01-24 16:38:20,309 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') -== 2023-01-24 16:38:20,309 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-24 16:38:20,309 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') -== 2023-01-24 16:38:20,309 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,310 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,310 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,310 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,310 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,311 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') -== 2023-01-24 16:38:20,311 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-24 16:38:20,311 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/include') -== 2023-01-24 16:38:20,311 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-24 16:38:20,312 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64 (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64') -== 2023-01-24 16:38:20,312 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-24 16:38:20,312 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so (previous value: '/apps/gent/RHEL8/haswell-ib/software/OpenMPI/4.1.4-GCC-11.3.0/lib64/libmpi.so') -== 2023-01-24 16:38:20,312 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') -== 2023-01-24 16:38:20,313 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') -== 2023-01-24 16:38:20,313 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-24 16:38:20,313 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') -== 2023-01-24 16:38:20,313 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-24 16:38:20,313 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') -== 2023-01-24 16:38:20,314 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,314 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,314 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,314 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,315 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,315 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') -== 2023-01-24 16:38:20,315 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-24 16:38:20,315 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') -== 2023-01-24 16:38:20,316 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-24 16:38:20,316 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') -== 2023-01-24 16:38:20,316 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-24 16:38:20,316 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') -== 2023-01-24 16:38:20,317 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-24 16:38:20,317 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib (previous value: '/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib') -== 2023-01-24 16:38:20,317 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-24 16:38:20,317 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') -== 2023-01-24 16:38:20,318 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-24 16:38:20,318 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') -== 2023-01-24 16:38:20,318 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,318 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') -== 2023-01-24 16:38:20,319 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,319 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') -== 2023-01-24 16:38:20,322 filetools.py:527 INFO Command python found at /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-24 16:38:20,322 pythonpackage.py:408 INFO Python command being used: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -== 2023-01-24 16:38:20,322 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' -== 2023-01-24 16:38:21,354 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' -== 2023-01-24 16:38:22,038 filetools.py:1918 INFO Creating directory /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep (parents: True, set_gid: False, sticky: False) -== 2023-01-24 16:38:22,049 run.py:236 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/t/trvaep/extensions/trvaep-0.1.0.tar.gz -== 2023-01-24 16:38:22,192 build_log.py:267 INFO configuring... -== 2023-01-24 16:38:22,200 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') -== 2023-01-24 16:38:22,200 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' -== 2023-01-24 16:38:22,368 pythonpackage.py:601 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.10.4 -== 2023-01-24 16:38:22,369 pythonpackage.py:613 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it -== 2023-01-24 16:38:22,369 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -V; /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' -== 2023-01-24 16:38:22,562 build_log.py:267 INFO building... -== 2023-01-24 16:38:22,572 build_log.py:267 INFO testing... -== 2023-01-24 16:38:22,580 build_log.py:267 INFO installing... -== 2023-01-24 16:38:22,587 environment.py:93 INFO Environment variable PYTHONPATH set to 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-== 2023-01-24 16:38:22,588 environment.py:93 INFO Environment variable PATH set to 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-== 2023-01-24 16:38:22,589 pythonpackage.py:212 INFO Determining pip version... -== 2023-01-24 16:38:22,589 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip --version -== 2023-01-24 16:38:23,522 pythonpackage.py:220 INFO Found pip version: 22.0.4 -== 2023-01-24 16:38:23,523 pythonpackage.py:487 INFO Found pip version 22.0.4, OK -== 2023-01-24 16:38:23,534 run.py:236 INFO running cmd: /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation . -== 2023-01-24 16:38:41,693 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 1 and output: -Processing /tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0 - Preparing metadata (pyproject.toml): started - Preparing metadata (pyproject.toml): finished with status 'error' - error: subprocess-exited-with-error - - Preparing metadata (pyproject.toml) did not run successfully. - exit code: 1 - > [26 lines of output] - Traceback (most recent call last): - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in - main() - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main - json_out['return_val'] = hook(**hook_input['kwargs']) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel - return hook(metadata_directory, config_settings) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/buildapi.py", line 49, in prepare_metadata_for_build_wheel - metadata = make_metadata(module, ini_info) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 408, in make_metadata - md_dict.update(get_info_from_module(module, ini_info.dynamic_metadata)) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 205, in get_info_from_module - docstring, version = get_docstring_and_version_via_import(target) - File "/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/flit_core/common.py", line 178, in get_docstring_and_version_via_import - spec.loader.exec_module(m) - File "", line 883, in exec_module - File "", line 241, in _call_with_frames_removed - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/__init__.py", line 3, in - from .model import * - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/__init__.py", line 1, in - from ._cvae import CVAE - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/_cvae.py", line 5, in - from .helper_module import Encoder, Decoder - File "/tmp/vsc43810/easybuild/build/trvaep/0.1.0/foss-2022a/trvaep/trvaep-0.1.0/trvaep/model/helper_module.py", line 4, in - from trvaep.utils import one_hot_encoder - ModuleNotFoundError: No module named 'trvaep' - [end of output] - - note: This error originates from a subprocess, and is likely not a problem with pip. -error: metadata-generation-failed - - Encountered error while generating package metadata. -> See above for output. - -note: This is an issue with the package mentioned above, not pip. -hint: See above for details. - (at easybuild/easybuild-framework/easybuild/tools/run.py:643 in parse_cmd_output) -== 2023-01-24 16:38:41,694 build_log.py:267 INFO ... (took 22 secs) -== 2023-01-24 16:38:41,703 build_log.py:267 INFO ... (took 1 min 10 secs) -== 2023-01-24 16:38:41,711 filetools.py:2019 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock... -== 2023-01-24 16:38:41,713 filetools.py:384 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock successfully removed. -== 2023-01-24 16:38:41,714 filetools.py:2023 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_haswell-ib_software_trvaep_0.1.0-foss-2022a.lock -== 2023-01-24 16:38:41,714 easyblock.py:4208 WARNING build failed (first 300 chars): cmd " /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/trvaep/0.1.0-foss-2022a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 1 and output -== 2023-01-24 16:38:41,716 easyblock.py:328 INFO Closing log for application name trvaep version 0.1.0 diff --git a/33_scib_pipeline/old_logz/nothing.log b/33_scib_pipeline/old_logz/nothing.log deleted file mode 100644 index e69de29b..00000000 diff --git a/33_scib_pipeline/pyproject.toml b/33_scib_pipeline/pyproject.toml deleted file mode 100644 index 889f922a..00000000 --- a/33_scib_pipeline/pyproject.toml +++ /dev/null @@ -1,64 +0,0 @@ -[project] -name = 'anndata2ri' -authors = [ - { name = 'Philipp A.', email = 'flying-sheep@web.de' }, -] -readme = 'README.rst' -classifiers = [ - 'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)', - 'Development Status :: 4 - Beta', - 'Intended Audience :: Developers', - 'Intended Audience :: Science/Research', - 'Programming Language :: Python :: 3', - 'Programming Language :: R', - 'Topic :: Scientific/Engineering :: Bio-Informatics', -] -urls.'Documentation' = 'https://icb-anndata2ri.readthedocs-hosted.com/' -urls.'Source Code' = 'https://github.com/theislab/anndata2ri' -urls.'Issue Tracker' = 'https://github.com/theislab/anndata2ri/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc' -version = '%(version)s' -requires-python = '>= 3.7' -dependencies = [ - 'get_version', - 'rpy2 >= 3.4.3', - 'tzlocal', # for pandas2ri - 'anndata', -] - -[project.optional-dependencies] -dev = ['pre-commit'] -test = [ - 'pytest', - 'pytest-faulthandler', - 'pygments', - 'scanpy', -] -doc = [ - 'sphinx>=3.0', - 'sphinx-autodoc-typehints', - 'scanpydoc', - 'sphinx-rtd-theme>=0.5', # Already a dep but 0.5 is prettier - 'lxml', # For scraping the R link info - 'importlib_metadata; python_version < "3.8"', -] - -[tool.hatch.version] -source = 'vcs' -raw-options = { local_scheme = 'no-local-version' } # be able to publish dev version - -[tool.hatch.build.hooks.vcs] -version-file = 'src/anndata2ri/_version.py' - -[tool.black] -line-length = 120 -skip-string-normalization = true - -[tool.isort] -profile = 'black' -line_length = 120 -lines_after_imports = 2 -length_sort_straight = true - -[build-system] -requires = ['hatchling', 'hatch-vcs'] -build-backend = 'hatchling.build' diff --git a/33_scib_pipeline/rpy2-3.5.7_disable_gui_tests.patch b/33_scib_pipeline/rpy2-3.5.7_disable_gui_tests.patch deleted file mode 100644 index ee117617..00000000 --- a/33_scib_pipeline/rpy2-3.5.7_disable_gui_tests.patch +++ /dev/null @@ -1,114 +0,0 @@ -diff -ruN rpy2-3.5.7_orig/rpy2/tests/ipython/test_rmagic.py rpy2-3.5.7/rpy2/tests/ipython/test_rmagic.py ---- rpy2-3.5.7_orig/rpy2/tests/ipython/test_rmagic.py 2023-01-07 20:56:11.000000000 +0100 -+++ rpy2-3.5.7/rpy2/tests/ipython/test_rmagic.py 2023-01-17 15:38:31.608641844 +0100 -@@ -98,7 +98,7 @@ - np.testing.assert_almost_equal(np.asarray(r('X')), - ipython_with_magic.user_ns['X']) - -- -+@pytest.mark.skip(reason="Cannot test with GUI") - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') - @pytest.mark.skipif(not has_numpy, reason='numpy not installed') -@@ -121,8 +121,7 @@ - np.testing.assert_equal(result, 12345) - - --@pytest.mark.skipif(IPython is None, -- reason='The optional package IPython cannot be imported.') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_run_cell_with_error(ipython_with_magic, clean_globalenv): - """Run an R block with an error.""" - -@@ -202,7 +201,7 @@ - assert tuple(fromr_dataf_py['x']) == tuple(dataf_py_roundtrip['x']) - assert tuple(fromr_dataf_py['y']) == tuple(dataf_py_roundtrip['y']) - -- -+@pytest.mark.skip(reason="Cannot test with GUI") - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') - @pytest.mark.skipif(has_pandas or (not has_numpy), reason='numpy not installed') -@@ -223,7 +222,7 @@ - dataf_np, np.ndarray - ) - -- -+@pytest.mark.skip(reason="Cannot test with GUI") - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') - @pytest.mark.skipif(not has_pandas, reason='pandas not installed') -@@ -241,6 +240,7 @@ - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') - @pytest.mark.skipif(not has_numpy, reason='numpy not installed') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_cell_magic(ipython_with_magic, clean_globalenv): - ipython_with_magic.push({'x': np.arange(5), 'y': np.array([3,5,4,6,7])}) - # For now, print statements are commented out because they print -@@ -261,6 +261,7 @@ - - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_cell_magic_localconverter(ipython_with_magic, clean_globalenv): - x = (1,2,3) - from rpy2.rinterface import IntSexpVector -@@ -315,6 +316,7 @@ - - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_rmagic_localscope(ipython_with_magic, clean_globalenv): - ipython_with_magic.push({'x': 0}) - ipython_with_magic.run_line_magic('R', '-i x -o result result <-x+1') -@@ -342,6 +344,7 @@ - reason='The optional package IPython cannot be imported.') - # TODO: There is no test here... - @pytest.mark.skipif(not has_numpy, reason='numpy not installed') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_png_plotting_args(ipython_with_magic, clean_globalenv): - '''Exercise the PNG plotting machinery''' - -@@ -363,6 +366,7 @@ - - @pytest.mark.skipif(IPython is None, - reason='The optional package IPython cannot be imported.') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_display_args(ipython_with_magic, clean_globalenv): - - cell = ''' -@@ -392,6 +396,7 @@ - @pytest.mark.skipif(not has_numpy, reason='numpy not installed') - @pytest.mark.skipif(not rpacks.isinstalled('Cairo'), - reason='R package "Cairo" not installed') -+@pytest.mark.skip(reason="Likely another test with GUI. Skipping for now, will be solved in https://github.com/rpy2/rpy2/issues/974") - def test_svg_plotting_args(ipython_with_magic, clean_globalenv): - '''Exercise the plotting machinery - -diff -ruN rpy2-3.5.7_orig/rpy2/tests/robjects/lib/test_grdevices.py rpy2-3.5.7/rpy2/tests/robjects/lib/test_grdevices.py ---- rpy2-3.5.7_orig/rpy2/tests/robjects/lib/test_grdevices.py 2023-01-07 20:56:11.000000000 +0100 -+++ rpy2-3.5.7/rpy2/tests/robjects/lib/test_grdevices.py 2023-01-13 10:39:51.074271777 +0100 -@@ -22,12 +22,14 @@ - - @pytest.mark.xfail(os.name == 'nt', - reason='Windows produces non-empty file with no plot') -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_rendertobytes_noplot(): - with grdevices.render_to_bytesio(grdevices.png) as b: - pass - assert len(b.getvalue()) == 0 - - -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_rendertofile(): - fn = tempfile.mktemp(suffix=".png") - with set_filenames_to_delete() as todelete: -@@ -39,6 +41,7 @@ - assert os.path.exists(fn) - - -+@pytest.mark.skip(reason="Cannot test with GUI") - def test_rendertobytes_plot(): - with grdevices.render_to_bytesio(grdevices.png) as b: - r(''' plot(0) ''') diff --git a/33_scib_pipeline/rpy2.eb b/33_scib_pipeline/rpy2.eb deleted file mode 100644 index 0f06585e..00000000 --- a/33_scib_pipeline/rpy2.eb +++ /dev/null @@ -1,55 +0,0 @@ -# Author: Pavel Grochal (INUITS) -# Updated: Denis Kristak (INUITS) -# License: GPLv2 - -easyblock = 'PythonBundle' - -name = 'rpy2' -version = '3.5.7' - -homepage = 'https://rpy2.bitbucket.io/' -description = """rpy2 is an interface to R running embedded in a Python process.""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('R', '4.2.1'), - ('IPython', '8.5.0'), -] - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('simplegeneric', '0.8.1', { - 'source_tmpl': '%(name)s-%(version)s.zip', - 'checksums': ['dc972e06094b9af5b855b3df4a646395e43d1c9d0d39ed345b7393560d0b9173'], - }), - # needs old-ish version of tzlocal, as the new one causes trouble with pandas - # https://github.com/rpy2/rpy2/issues/823 - ('tzlocal', '2.1', { - 'checksums': ['643c97c5294aedc737780a49d9df30889321cbe1204eac2c2ec6134035a92e44'], - }), - ('cffi', '1.15.1'), - ('tzdata', '2022.7'), - # ('backports-zoneinfo', '0.2.1', { - # 'modulename': 'backports.zoneinfo', - # 'source_tmpl': 'backports.zoneinfo-%(version)s.tar.gz', - # 'checksums': ['fadbfe37f74051d024037f223b8e001611eac868b5c5b06144ef4d8b799862f2'], - # }), - ('pytz-deprecation-shim', '0.1.0.post0', { - 'source_tmpl': 'pytz_deprecation_shim-%(version)s.tar.gz', - 'checksums': ['af097bae1b616dde5c5744441e2ddc69e74dfdcb0c263129610d85b87445a59d'], - }), - (name, version, { - 'patches': ['rpy2-%(version)s_disable_gui_tests.patch'], - }), -] - -sanity_check_commands = [ - "python -m rpy2.situation", - "pytest --pyargs rpy2 " -] - -moduleclass = 'tools' diff --git a/33_scib_pipeline/scib-pipeline.patch b/33_scib_pipeline/scib-pipeline.patch deleted file mode 100644 index ad374520..00000000 --- a/33_scib_pipeline/scib-pipeline.patch +++ /dev/null @@ -1,117 +0,0 @@ -diff -ruN scib-pipeline-main_orig/envs/create_conda_environments.sh scib-pipeline-main/envs/create_conda_environments.sh ---- scib-pipeline-main_orig/envs/create_conda_environments.sh 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/envs/create_conda_environments.sh 2023-02-07 16:14:46.468039486 +0100 -@@ -66,7 +66,7 @@ - - if [ "$QUIET" != "-q" ]; then - # list all pip dependencies -- conda run -n $env pip list -+ pip list - fi - - # Set environment variables -@@ -88,11 +88,9 @@ - echo "Install R packages through R" - - echo "scib pipeline environment..." --conda run -n "scib-pipeline-R${R_VERSION}" --no-capture-output \ -- Rscript -e "remotes::install_github('theislab/kBET', quiet=TRUE)" -+Rscript -e "remotes::install_github('theislab/kBET', quiet=TRUE)" - - echo "scib R environment..." --conda run -n "scib-R${R_VERSION}" --no-capture-output \ -- Rscript "$SCRIPT_DIR/install_R_methods.R" -d "$SCRIPT_DIR/dependencies-R${R_VERSION}.tsv" $QUIET -+Rscript "$SCRIPT_DIR/install_R_methods.R" -d "$SCRIPT_DIR/dependencies-R${R_VERSION}.tsv" $QUIET - - echo "Done." -diff -ruN scib-pipeline-main_orig/scripts/integration/Snakefile scib-pipeline-main/scripts/integration/Snakefile ---- scib-pipeline-main_orig/scripts/integration/Snakefile 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/scripts/integration/Snakefile 2023-02-07 16:15:08.120040593 +0100 -@@ -21,7 +21,7 @@ - batch_key = lambda wildcards: cfg.get_from_scenario(wildcards.scenario, key="batch_key"), - cell_type = cfg.get_celltype_option_for_integration, - hvgs = cfg.get_hvg, -- cmd = f"conda run --no-capture-output -n {cfg.py_env} python" -+ cmd = f"python" - benchmark: - str(cfg.ROOT / "{scenario}/integration/{scaling}/{hvg}/{method}.h5ad.benchmark") - shell: -@@ -51,7 +51,7 @@ - params: - batch_key = lambda w: cfg.get_from_scenario(w.scenario, key="batch_key"), - hvgs = lambda w: cfg.get_hvg(w, rules.integration_prepare.output, prep="RDS"), -- cmd = f"conda run --no-capture-output -n {cfg.r_env} Rscript", -+ cmd = f"Rscript", - benchmark: - str(cfg.ROOT / "{scenario}/integration/{scaling}/{hvg}/R/{method}.RDS.benchmark") - shell: -@@ -76,7 +76,7 @@ - Convert integrated data from {wildcards.method} into h5ad - """ - params: -- cmd = f"conda run --no-capture-output -n {cfg.py_env} python" -+ cmd = f"python" - shell: - """ - if [ {wildcards.method} == "conos" ] -diff -ruN scib-pipeline-main_orig/scripts/metrics/Snakefile scib-pipeline-main/scripts/metrics/Snakefile ---- scib-pipeline-main_orig/scripts/metrics/Snakefile 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/scripts/metrics/Snakefile 2023-02-07 16:15:17.272041060 +0100 -@@ -17,7 +17,7 @@ - organism = lambda wildcards: cfg.get_from_scenario(wildcards.scenario, key="organism"), - assay = lambda wildcards: cfg.get_from_scenario(wildcards.scenario, key="assay"), - hvgs = lambda wildcards: cfg.get_feature_selection(wildcards.hvg), -- cmd = f"conda run -n {cfg.py_env} python" -+ cmd = f"python" - shell: - """ - {params.cmd} scripts/metrics/metrics.py -u {input.u} -i {input.i} \ -@@ -53,7 +53,7 @@ - cfg.ROOT / "metrics.csv" - message: "Merge all metrics" - params: -- cmd = f"conda run -n {cfg.py_env} python" -+ cmd = f"python" - shell: - """ - {params.cmd} scripts/metrics/merge_metrics.py -i {input.tables} \ -diff -ruN scib-pipeline-main_orig/scripts/preprocessing/Snakefile scib-pipeline-main/scripts/preprocessing/Snakefile ---- scib-pipeline-main_orig/scripts/preprocessing/Snakefile 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/scripts/preprocessing/Snakefile 2023-02-07 16:15:35.216041978 +0100 -@@ -15,13 +15,12 @@ - scale = lambda wildcards: "-s" if wildcards.scaling == "scaled" else "", - rout = lambda wildcards: "-r" if wildcards.prep == "RDS" else "", - seurat = lambda wildcards: "-l" if wildcards.prep == "RDS" else "", -- env = f"conda run -n {cfg.py_env}" - benchmark: - str(cfg.ROOT / "{scenario}/prepare/{scaling}/{hvg}/prep_{prep}.benchmark") - #join_path(cfg.get_filename_pattern("prepare", "directory_by_setting"), "prep_{prep}.benchmark") - shell: - """ -- {params.env} python scripts/preprocessing/runPP.py -i {input.adata} \ -+ python scripts/preprocessing/runPP.py -i {input.adata} \ - -o {output} -b {params.batch_key} \ - --hvgs {params.hvgs} {params.scale} {params.rout} {params.seurat} - """ -diff -ruN scib-pipeline-main_orig/scripts/visualization/Snakefile scib-pipeline-main/scripts/visualization/Snakefile ---- scib-pipeline-main_orig/scripts/visualization/Snakefile 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/scripts/visualization/Snakefile 2023-02-07 16:15:48.588042661 +0100 -@@ -19,7 +19,7 @@ - params: - batch_key = lambda wildcards: cfg.get_from_scenario(wildcards.scenario, key="batch_key"), - label_key = lambda wildcards: cfg.get_from_scenario(wildcards.scenario, key="label_key"), -- cmd = f"conda run -n {cfg.py_env} python" -+ cmd = f"python" - shell: - """ - {params.cmd} scripts/visualization/save_embeddings.py \ -diff -ruN scib-pipeline-main_orig/Snakefile scib-pipeline-main/Snakefile ---- scib-pipeline-main_orig/Snakefile 2022-10-14 19:37:05.000000000 +0200 -+++ scib-pipeline-main/Snakefile 2023-02-07 16:13:38.536036013 +0100 -@@ -32,5 +32,5 @@ - cfg.ROOT / "benchmarks.csv" - message: "Merge all benchmarks" - params: -- cmd = f"conda run -n {cfg.py_env} python" -+ cmd = f"python" - shell: "{params.cmd} {input.script} -o {output} --root {cfg.ROOT}" diff --git a/33_scib_pipeline/scib/PyTables-3.8.0-fix-libs.patch b/33_scib_pipeline/scib/PyTables-3.8.0-fix-libs.patch deleted file mode 100644 index c356449c..00000000 --- a/33_scib_pipeline/scib/PyTables-3.8.0-fix-libs.patch +++ /dev/null @@ -1,15 +0,0 @@ -# pyTables expects that LIBS is a list of library names and will add -# a -l by itself. -# original patch by ward.poelmans@ugent.be, ported to PyTables 3.5.2 by Kenneth Hoste (HPC-UGent) ---- PyTables-3.8.0/setup.py.orig 2019-08-23 10:35:55.467589283 +0200 -+++ PyTables-3.8.0/setup.py 2019-08-23 10:36:39.408195074 +0200 -@@ -576,6 +576,9 @@ - # is not a good idea. - CFLAGS = os.environ.get("CFLAGS", "").split() - LIBS = os.environ.get("LIBS", "").split() -+ for idx, lib in enumerate(LIBS): -+ if lib.startswith("-l"): -+ LIBS[idx] = lib.replace("-l", "") - CONDA_PREFIX = os.environ.get("CONDA_PREFIX", "") - # We start using pkg-config since some distributions are putting HDF5 - # (and possibly other libraries) in exotic locations. See issue #442. diff --git a/33_scib_pipeline/scib/PyTables-3.8.0-foss-2022a.eb b/33_scib_pipeline/scib/PyTables-3.8.0-foss-2022a.eb deleted file mode 100644 index 063d0423..00000000 --- a/33_scib_pipeline/scib/PyTables-3.8.0-foss-2022a.eb +++ /dev/null @@ -1,68 +0,0 @@ -# http://www.pytables.org/usersguide/installation.html -# updated: Denis Kristak (INUITS) - -easyblock = 'PythonBundle' - -name = 'PyTables' -version = '3.8.0' - -homepage = 'https://www.pytables.org' -description = """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope - with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the - NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical - parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, - process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk - resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as - relational or object oriented databases.""" - -toolchain = {'name': 'foss', 'version': '2022a'} -toolchainopts = {'usempi': True} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), # provides numexpr - ('HDF5', '1.12.2'), - ('LZO', '2.10'), - ('Blosc', '1.21.3'), - ('scikit-build', '0.15.0'), -] - -builddependencies = [ - ('CMake', '3.23.1'), -] - -use_pip = True - -exts_list = [ - ('py-cpuinfo', '9.0.0', { - 'modulename': 'cpuinfo', - 'checksums': ['3cdbbf3fac90dc6f118bfd64384f309edeadd902d7c8fb17f02ffa1fc3f49690'], - }), - ('blosc2', '2.0.0', { - 'checksums': ['f19b0b3674f6c825b490f00d8264b0c540c2cdc11ec7e81178d38b83c57790a1'], - }), - (name, version, { - 'modulename': 'tables', - 'patches': ['%(name)s-%(version)s-fix-libs.patch'], - 'source_urls': ['https://github.com/PyTables/PyTables/archive/'], - 'sources': ['v%(version)s.tar.gz'], - 'checksums': [ - {'v3.8.0.tar.gz': '652b56b3d355797af4337a4493acfa4c4de4a60e7c6663cc6ce44d8ee477e920'}, - {'PyTables-3.8.0-fix-libs.patch': '740d87c753c22e70aaa2720a50de1b729bc110360b7e44f40b0fb0c4a5b14c6c'}, - ], - }), -] - -sanity_pip_check = True - -local_bins = ['pt2to3', 'ptdump', 'ptrepack', 'pttree'] -sanity_check_paths = { - 'files': ['bin/%s' % x for x in local_bins], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'tables'} - -sanity_check_commands = ["%s --help" % x for x in local_bins] - -moduleclass = 'data' diff --git a/33_scib_pipeline/scib/deprecated.eb b/33_scib_pipeline/scib/deprecated.eb deleted file mode 100644 index 2aebc225..00000000 --- a/33_scib_pipeline/scib/deprecated.eb +++ /dev/null @@ -1,29 +0,0 @@ -# author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'Deprecated' -version = '1.2.13' - -homepage = 'https://github.com/tantale/deprecated' -description = "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), -] - - -use_pip = True -sanity_pip_check = True - -exts_list = [ - ('wrapt', '1.12.1', { - 'checksums': ['b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7'], - }), - (name, version, { - 'checksums': ['43ac5335da90c31c24ba028af536a91d41d53f9e6901ddb021bcc572ce44e38d'], - }), -] - -moduleclass = 'tools' diff --git a/33_scib_pipeline/scib/igraph.eb b/33_scib_pipeline/scib/igraph.eb deleted file mode 100644 index 62b92b52..00000000 --- a/33_scib_pipeline/scib/igraph.eb +++ /dev/null @@ -1,39 +0,0 @@ -# Author: Denis Krišťák (INUITS) -# Modified: Jasper Grimm (UoY) - -easyblock = 'CMakeMake' - -name = 'igraph' -version = '0.10.4' - -homepage = 'https://igraph.org' -description = """igraph is a collection of network analysis tools with the emphasis on -efficiency, portability and ease of use. igraph is open source and free. igraph can be -programmed in R, Python and C/C++.""" - -toolchain = {'name': 'foss', 'version': '2022a'} -toolchainopts = {'pic': True} - -source_urls = ['https://github.com/igraph/igraph/releases/download/%(version)s'] -sources = ['%(name)s-%(version)s.tar.gz'] - -builddependencies = [ - ('CMake', '3.24.3'), -] - -dependencies = [ - ('GLPK', '5.0'), - ('libxml2', '2.9.13'), - ('zlib', '1.2.12'), - ('arpack-ng', '3.8.0'), -] - -# Build static and shared libraries -configopts = ["-DBUILD_SHARED_LIBS=OFF", "-DBUILD_SHARED_LIBS=ON"] - -sanity_check_paths = { - 'files': ['include/igraph/igraph.h'] + ['lib/libigraph.%s' % x for x in ['a', SHLIB_EXT]], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/33_scib_pipeline/scib/import_louvain_failed.log b/33_scib_pipeline/scib/import_louvain_failed.log deleted file mode 100644 index 04abc39a..00000000 --- a/33_scib_pipeline/scib/import_louvain_failed.log +++ /dev/null @@ -1,10 +0,0 @@ -Python 3.10.4 (main, Nov 25 2022, 08:11:22) [GCC 11.3.0] on linux -Type "help", "copyright", "credits" or "license" for more information. ->>> import louvain -Traceback (most recent call last): - File "", line 1, in - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/louvain/0.8.0-foss-2022a/lib/python3.10/site-packages/louvain/__init__.py", line 35, in - from .functions import ALL_COMMS - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/louvain/0.8.0-foss-2022a/lib/python3.10/site-packages/louvain/functions.py", line 3, in - from . import _c_louvain -ImportError: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/louvain/0.8.0-foss-2022a/lib/python3.10/site-packages/louvain/_c_louvain.cpython-310-x86_64-linux-gnu.so: undefined symbol: igraph_rngtype_mt19937 diff --git a/33_scib_pipeline/scib/louvain-use_system_igraph.patch b/33_scib_pipeline/scib/louvain-use_system_igraph.patch deleted file mode 100644 index 5f1581f5..00000000 --- a/33_scib_pipeline/scib/louvain-use_system_igraph.patch +++ /dev/null @@ -1,43 +0,0 @@ -diff -ruN louvain-0.8.0_orig/setup.py louvain-0.8.0/setup.py ---- louvain-0.8.0_orig/setup.py 2023-02-09 11:21:33.976337043 +0100 -+++ louvain-0.8.0/setup.py 2023-02-10 13:06:11.997482500 +0100 -@@ -80,6 +80,7 @@ - "/usr/lib", - "/lib64", - "/lib", -+ # "EBROOTGCCCORE", - ] - else: - extra_libdirs = [] -@@ -595,10 +596,10 @@ - build_folder = vendor_folder / "build" / "igraph" - install_folder = vendor_folder / "install" / "igraph" - -- if install_folder.exists(): -- # Vendored igraph already compiled and installed, just use it -- self.use_vendored_igraph() -- return True -+ # if install_folder.exists(): -+ # # Vendored igraph already compiled and installed, just use it -+ self.use_vendored_igraph() -+ return True - - if (source_folder / "CMakeLists.txt").exists(): - igraph_builder = IgraphCCoreCMakeBuilder() -@@ -648,6 +649,7 @@ - ext.runtime_library_dirs = self.runtime_library_dirs - ext.libraries = self.libraries - ext.extra_compile_args = self.extra_compile_args -+ print("XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX") - ext.extra_link_args = self.extra_link_args - ext.extra_objects = self.extra_objects - ext.define_macros = self.define_macros -@@ -745,7 +747,7 @@ - the include and library paths and the library names accordingly.""" - building_on_windows = building_on_windows_msvc() - -- vendor_dir = Path("vendor") / "install" / "igraph" -+ vendor_dir = Path("EBROOTIGRAPH") - - buildcfg.include_dirs = [str(vendor_dir / "include" / "igraph")] - buildcfg.library_dirs = [] diff --git a/33_scib_pipeline/scib/louvain.eb b/33_scib_pipeline/scib/louvain.eb deleted file mode 100644 index cbd706ae..00000000 --- a/33_scib_pipeline/scib/louvain.eb +++ /dev/null @@ -1,38 +0,0 @@ -# author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'louvain' -version = '0.8.0' - -homepage = 'https://pypi.org/project/louvain/' -description = "louvain is a general algorithm for methods of community detection in large networks." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('python-igraph', '0.10.4'), - ('SciPy-bundle', '2022.05'), - ('flex', '2.6.4'), - ('Bison', '3.8.2'), - ('GLib', '2.72.1'), -] -local_louvain_preinstallopts = 'sed -i "s@EBROOTIGRAPH@$EBROOTIGRAPH@g" setup.py && ' -# local_louvain_preinstallopts += 'sed -i "s@EBROOTGCCCORE@$EBROOTGCCCORE@g" setup.py && ' -exts_list = [ - ('ddt', '1.6.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/ddt/'], - }), - (name, version, { - 'patches': ['louvain-use_system_igraph.patch'], - 'preinstallopts': local_louvain_preinstallopts, - 'modulename': False, - }), -] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - - -moduleclass = 'lib' diff --git a/33_scib_pipeline/scib/numba.eb b/33_scib_pipeline/scib/numba.eb deleted file mode 100644 index b0ae10b9..00000000 --- a/33_scib_pipeline/scib/numba.eb +++ /dev/null @@ -1,54 +0,0 @@ -# updated: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'numba' -version = '0.56.4' - -homepage = 'https://numba.pydata.org/' -description = """Numba is an Open Source NumPy-aware optimizing compiler for -Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM -compiler infrastructure to compile Python syntax to machine code.""" - -toolchain = {'name': 'foss', 'version': '2022a'} -toolchainopts = {'pic': True} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('LLVM', '14.0.3'), -] - -use_pip = True -sanity_pip_check = True - -local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " -local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && " - - -exts_list = [ - ('llvmlite', '0.39.1', { - 'patches': ['llvmlite-0.39.1_fix-LLVM-14.patch'], - 'preinstallopts': "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ", - 'checksums': [ - {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'}, - {'llvmlite-0.39.1_fix-LLVM-14.patch': '39cde92d522cce45f8b93231059f7e2c69bc54dc7c35c4c6eaee3423f3f04d17'}, - ], - }), - (name, version, { - 'checksums': ['32d9fef412c81483d7efe0ceb6cf4d3310fde8b624a9cecca00f790573ac96ee'], - }), -] - -fix_python_shebang_for = ['bin/*'] - -sanity_check_paths = { - 'files': ['bin/numba', 'bin/pycc'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [ - "python -m llvmlite.tests", - "numba --help", -] - -moduleclass = 'lang' diff --git a/33_scib_pipeline/scib/pydot.eb b/33_scib_pipeline/scib/pydot.eb deleted file mode 100644 index 2f7e3d2b..00000000 --- a/33_scib_pipeline/scib/pydot.eb +++ /dev/null @@ -1,26 +0,0 @@ -# updated: Denis Kristak (INUITS) -easyblock = 'PythonPackage' - -name = 'pydot' -version = '1.4.2' - -homepage = 'https://github.com/pydot/pydot' -description = "Python interface to Graphviz's Dot language." - -toolchain = {'name': 'GCCcore', 'version': '11.3.0'} - -sources = [SOURCE_TAR_GZ] -checksums = ['248081a39bcb56784deb018977e428605c1c758f10897a339fce1dd728ff007d'] - -builddependencies = [('binutils', '2.38')] - -dependencies = [ - ('Python', '3.10.4'), - ('Graphviz', '5.0.0'), -] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - -moduleclass = 'vis' diff --git a/33_scib_pipeline/scib/python-igraph.eb b/33_scib_pipeline/scib/python-igraph.eb deleted file mode 100644 index 3f65965b..00000000 --- a/33_scib_pipeline/scib/python-igraph.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'python-igraph' -version = '0.10.4' - -homepage = 'https://igraph.org/python' -description = """Python interface to the igraph high performance graph library, primarily aimed at complex network - research and analysis.""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -builddependencies = [ - ('pkgconf', '1.8.0'), - ('CMake', '3.24.3'), -] - -dependencies = [ - ('Python', '3.10.4'), - ('igraph', '0.10.4'), - ('PyCairo', '1.21.0'), - ('Clang', '13.0.1'), -] - -use_pip = True - -exts_list = [ - ('texttable', '1.6.7', { - 'checksums': ['290348fb67f7746931bcdfd55ac7584ecd4e5b0846ab164333f0794b121760f2'], - }), - ('igraph', version, { - 'patches': ['python-igraph-0.9.0_fix-igraph-libs.patch'], - 'installopts': '--install-option="--use-pkg-config"', - 'modulename': 'igraph', - }), -] - -sanity_check_paths = { - 'files': ['bin/igraph'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -# cairo must be available for proper plotting support -sanity_check_commands = [ - "python -c 'from igraph.drawing.cairo.utils import find_cairo; cairo = find_cairo(); cairo.Context'", -] - -sanity_pip_check = True - -moduleclass = 'lib' diff --git a/33_scib_pipeline/scib/scanpy.eb b/33_scib_pipeline/scib/scanpy.eb deleted file mode 100644 index b9d1a3f9..00000000 --- a/33_scib_pipeline/scib/scanpy.eb +++ /dev/null @@ -1,69 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'scanpy' -version = '1.9.1' - -homepage = 'https://scanpy.readthedocs.io/en/stable/' -description = """Scanpy is a scalable toolkit for analyzing single-cell gene expression data built - jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference - and differential expression testing. The Python-based implementation efficiently deals with - datasets of more than one million cells. -""" - -toolchain = {'name': 'foss', 'version': '2022a'} -toolchainopts = {'openmp': True} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('h5py', '3.7.0'), - ('networkx', '2.8.4'), - ('numba', '0.56.4'), - ('PyTables', '3.8.0'), - ('statsmodels', '0.13.1'), - ('scikit-learn', '1.1.2'), - ('Seaborn', '0.12.1'), - ('tqdm', '4.64.0'), - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), -] - -use_pip = True - -exts_list = [ - ('natsort', '8.2.0', { - 'checksums': ['57f85b72c688b09e053cdac302dd5b5b53df5f73ae20b4874fcbffd8bf783d11'], - }), - ('xlrd', '2.0.1', { - 'checksums': ['f72f148f54442c6b056bf931dbc34f986fd0c3b0b6b5a58d013c9aef274d0c88'], - }), - ('anndata', '0.8.0', { - 'checksums': ['94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e'], - }), - ('stdlib-list', '0.8.0', { - 'checksums': ['a1e503719720d71e2ed70ed809b385c60cd3fb555ba7ec046b96360d30b16d9f'], - }), - ('sinfo', '0.3.4', { - 'checksums': ['81ea91c69a875de178e10bada9476d7300a1f712e1823dbd7714f43a10baba4d'], - }), - ('session_info', '1.0.0', { - 'checksums': ['3cda5e03cca703f32ae2eadbd6bd80b6c21442cfb60e412c21cb8ad6d5cbb6b7'], - }), - (name, version, { - 'checksums': ['00c9a83b649da7e0171c91e9a08cff632102faa760614fd05cd4d1dbba4eb541'], - }), -] - -sanity_pip_check = True - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['natsort', 'scanpy']], - 'dirs': ['lib/python%(pyshortver)s/site-packages/'], -} - -sanity_check_commands = [ - "natsort --help", - "scanpy --help", -] - -moduleclass = 'bio' diff --git a/33_scib_pipeline/scib/scib.eb b/33_scib_pipeline/scib/scib.eb deleted file mode 100644 index 439c6df1..00000000 --- a/33_scib_pipeline/scib/scib.eb +++ /dev/null @@ -1,37 +0,0 @@ -# author: Denis Kristak (INUITS) -easyblock = 'PythonPackage' - -name = 'scib' -version = '1.1.3' - -homepage = 'https://github.com/theislab/scib' -description = "Benchmarking atlas-level data integration in single-cell genomics." - -toolchain = {'name': 'foss', 'version': '2022a'} - -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), -] - -use_pip = True -sanity_pip_check = True -download_dep_fail = True - -preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " - -moduleclass = 'data' diff --git a/33_scib_pipeline/scib/scikit-misc.eb b/33_scib_pipeline/scib/scikit-misc.eb deleted file mode 100644 index 6d449427..00000000 --- a/33_scib_pipeline/scib/scikit-misc.eb +++ /dev/null @@ -1,26 +0,0 @@ -# updated: Denis Kristak (INUITS) -easyblock = 'PythonPackage' - -name = 'scikit-misc' -version = '0.1.4' - -homepage = 'https://github.com/has2k1/scikit-misc' -description = "Miscellaneous tools for data analysis and scientific computing" - -toolchain = {'name': 'foss', 'version': '2022a'} - -sources = [SOURCE_TAR_GZ] -checksums = ['f7746a0347811063e1ecf9121df94835785003953c38b5ba84f63fc508c22911'] - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), -] - -use_pip = True -download_dep_fail = True -sanity_pip_check = True - -options = {'modulename': 'skmisc'} - -moduleclass = 'lib' diff --git a/33_scib_pipeline/scib/umap-learn.eb b/33_scib_pipeline/scib/umap-learn.eb deleted file mode 100644 index e31afa96..00000000 --- a/33_scib_pipeline/scib/umap-learn.eb +++ /dev/null @@ -1,38 +0,0 @@ -# Author: Denis Krišťák (INUITS) -easyblock = "PythonBundle" - -name = 'umap-learn' -version = '0.5.3' - -homepage = 'https://umap-learn.readthedocs.io/en/latest/' -description = """ -Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique -that can be used for visualisation similarly to t-SNE, but also for general non-linear -dimension reduction. -""" - -toolchain = {'name': 'foss', 'version': '2022a'} -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('scikit-learn', '1.1.2'), - ('numba', '0.56.4'), - ('LLVM', '14.0.3'), - ('tqdm', '4.64.0'), -] - -use_pip = True - -exts_list = [ - ('pynndescent', '0.5.8', { - 'checksums': ['a7c552569bf604a101fd54bba1d27c12389e065945dee3a6777a518c63a46f2b'], - }), - (name, version, { - 'modulename': 'umap', - 'checksums': ['dbd57cb181c2b66d238acb5635697526bf24c798082daed0cf9b87f6a3a6c0c7'], - }), -] - -sanity_pip_check = True - -moduleclass = 'tools' diff --git a/33_scib_pipeline/scib_pipeline.eb b/33_scib_pipeline/scib_pipeline.eb deleted file mode 100644 index 154cd5f5..00000000 --- a/33_scib_pipeline/scib_pipeline.eb +++ /dev/null @@ -1,101 +0,0 @@ -# author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scib-pipeline' -# version = '0.2.0' -version = '20221014' -local_commit = 'b2ddba53016fb0574c37fed0c45cc0c490bdac7c' - -homepage = 'https://github.com/theislab/scib-pipeline' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -builddependencies = [ - ('CMake', '3.23.1') -] - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('R-bundle-Bioconductor', '3.15', '-R-%(rver)s'), - ('R', '4.2.1'), - ('scib', '1.1.3'), - ('scikit-learn', '1.1.2'), - ('scikit-misc', '0.1.4'), - ('rpy2', '3.5.7'), - ('snakemake', '7.20.0'), - ('networkx', '2.8.4'), - ('ICU', '71.1'), - ('Graphviz', '5.0.0'), - ('GSL', '2.7'), - ('Seaborn', '0.12.1'), - ('numba', '0.56.4'), - ('scanpy', '1.9.1'), - ('h5py', '3.7.0'), - # missing - louvain - louvain is down from github, but it is on pypi - ('leidenalg', '0.9.1'), - ('umap-learn', '0.5.3'), - ('pydot', '1.4.2'), - ('igraph', '0.10.3'), - ('python-igraph', '0.10.3'), - ('Deprecated', '1.2.13'), - ('torchvision', '0.13.1'), - ('trvaep', '0.1.0'), - ('scvi-tools', '0.19.0'), - # TODO possibly missing liger https://cran.r-project.org/web/packages/liger/index.html -] - -use_pip = True -sanity_pip_check = True - -local_preinstallopts = "" -# local_preinstallopts += "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && " -# local_preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && " - -# avoid hatchling requirement to install infercnvpy -# (since installing it introduces conflicting version requirements with poetry included with Python) -local_anndata2ri_preinstallopts = """sed -i -e 's/^build-backend = .*/build-backend = "setuptools.build_meta"/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e 's/^requires = .*/requires = ["setuptools"]/g' pyproject.toml && """ -local_anndata2ri_preinstallopts += """sed -i -e "s/dynamic = \['version'\]/version = '%(version)s'/g" pyproject.toml && """ - -local_louvain_preinstallopts = """sed -i -e 's/,<0.10//g' setup.py && """ - -exts_list = [ - ('anndata', '0.8.0', { - }), - ('anndata2ri', '1.1', { - 'preinstallopts': local_anndata2ri_preinstallopts - }), - ('get_version', '3.5.4'), - ('trvaep', '0.1.0'), - ('annoy', '1.17.1'), - ('geosketch', '1.2'), - ('fbpca', '1.0'), - ('scgen', '2.1.0'), - ('bbknn', '1.5.1'), - ('scanorama', '1.7.3'), - ('memory-profiler', '0.61.0', {'sources': [{ - 'download_filename': 'memory_profiler-%(version)s.tar.gz', - 'filename': 'memory-profiler-%(version)s.tar.gz', - }]} - ), - ('louvain', '0.7.2', { - 'preinstallopts': local_louvain_preinstallopts - }), - (name, version, { - 'source_tmpl': '%s.tar.gz' % local_commit, - 'source_urls': ['https://github.com/theislab/scib-pipeline/archive/'], - 'patches': ['scib-pipeline.patch'], - 'preinstallopts': local_preinstallopts, - 'skipsteps': ['install'], - 'postinstallcmds': [ - 'mkdir %(installdir)s/pipeline', - 'cp -r ./* %(installdir)s/pipeline', - ], - 'modulename': 'scib', - }), -] - -moduleclass = 'vis' diff --git a/33_scib_pipeline/script_qsub.sh b/33_scib_pipeline/script_qsub.sh deleted file mode 100644 index 8362f338..00000000 --- a/33_scib_pipeline/script_qsub.sh +++ /dev/null @@ -1 +0,0 @@ -for x in $(env | grep ^SLURM | cut -f1 -d= | sort | egrep -v '^SLURM_CLUSTERS$|^^CURM_CONF$'); do unset $x; done \ No newline at end of file diff --git a/33_scib_pipeline/scvi-tools.eb b/33_scib_pipeline/scvi-tools.eb deleted file mode 100644 index 877cfdf6..00000000 --- a/33_scib_pipeline/scvi-tools.eb +++ /dev/null @@ -1,75 +0,0 @@ -# updated: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'scvi-tools' -version = '0.19.0' - -homepage = 'https://github.com/scverse/scvi-tools' -description = """scvi-tools (single-cell variational inference tools) is a package for probabilistic modeling and -analysis of single-cell omics data, built on top of PyTorch and AnnData.""" - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('matplotlib', '3.5.2'), - ('h5py', '3.7.0'), - ('IPython', '8.5.0'), - ('jax', '0.3.23'), - ('openpyxl', '3.0.10'), - ('PyTorch-Lightning', '1.7.7'), - ('scikit-learn', '1.1.2'), - ('dm-tree', '0.1.8'), - ('scanpy', '1.9.1'), - ('scikit-misc', '0.1.4'), -] - -use_pip = True - -exts_list = [ - ('natsort', '8.1.0', { - }), - ('anndata', '0.8.0', { - }), - ('docrep', '0.3.2', { - }), - ('typing_extensions', '4.4.0', { - }), - # stick to flax v0.5.2, which does not require tensorstore (which is built with Bazel) or a very recent jax yet... - ('flax', '0.5.2', { - }), - ('multipledispatch', '0.6.0', { - }), - ('numpyro', '0.10.1', { - }), - ('toolz', '0.12.0', { - }), - ('chex', '0.1.5', { - }), - ('optax', '0.1.3', { - }), - ('pyro-api', '0.1.2', { - 'modulename': 'pyroapi', - }), - ('pyro-ppl', '1.8.0', { - 'modulename': 'pyro', - }), - ('commonmark', '0.9.1', { - }), - ('rich', '11.1.0', { - }), - ('contextlib2', '21.6.0', { - }), - ('ml_collections', '0.1.1', { - }), - ('mudata', '0.2.0', { - }), - (name, version, { - 'modulename': 'scvi', - }), -] - -sanity_pip_check = True - -moduleclass = 'bio' diff --git a/33_scib_pipeline/snakemake.eb b/33_scib_pipeline/snakemake.eb deleted file mode 100644 index edabc20c..00000000 --- a/33_scib_pipeline/snakemake.eb +++ /dev/null @@ -1,82 +0,0 @@ -easyblock = 'PythonBundle' - -name = 'snakemake' -version = '7.20.0' - -homepage = 'https://snakemake.readthedocs.io' -description = "The Snakemake workflow management system is a tool to create reproducible and scalable data analyses." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('SciPy-bundle', '2022.05'), - ('PyYAML', '6.0'), - ('GitPython', '3.1.27'), - ('IPython', '8.5.0'), -] - -use_pip = True -sanity_pip_check = True - -# snakemake-6.6.1_fix_jobs.patch is needed for clusters that do not support copying the full env into the batch job -exts_list = [ - ('wrapt', '1.12.1', { # TODO add new version (to `deprecated` as well) - 'checksums': ['b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7'], - }), - ('ratelimiter', '1.2.0.post0', { - 'checksums': ['5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7'], - }), - ('ConfigArgParse', '1.5.3', { - 'checksums': ['1b0b3cbf664ab59dada57123c81eff3d9737e0d11d8cf79e3d6eb10823f1739f'], - }), - ('datrie', '0.8.2', { - 'checksums': ['525b08f638d5cf6115df6ccd818e5a01298cd230b2dac91c8ff2e6499d18765d'], - }), - ('toposort', '1.9', { - }), - ('amply', '0.1.5', { - }), - ('PuLP', '2.7.0', { - }), - ('smart_open', '6.3.0', { - }), - ('connection_pool', '0.0.3', { - 'checksums': ['bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc'], - }), - ('stopit', '1.1.2', { - 'checksums': ['f7f39c583fd92027bd9d06127b259aee7a5b7945c1f1fa56263811e1e766996d'], - }), - ('humanfriendly', '10.0', { - 'checksums': ['6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc'], - }), - ('reretry', '0.11.8', { - }), - ('throttler', '1.2.2', { - }), - ('dpath', '2.1.4', { - }), - ('plac', '1.3.5', { - }), - ('yte', '1.5.1', { - }), - (name, version, { - # 'patches': ['snakemake-%(version)s_fix_jobs.patch'], - 'checksums': [ - ], - }), -] - -# SNAKEMAKE_LOAD_MODULE is needed for snakemake-6.6.1_fix_jobs.patch to work -# local_snakemake_load is the command for loading this module (here: default EB module naming scheme) -# local_snakemake_load = 'module load %(module_name)s' -# modextravars = {'SNAKEMAKE_LOAD_MODULE': local_snakemake_load} - -sanity_check_paths = { - 'files': ['bin/snakemake'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/snakemake'], -} - -sanity_check_commands = ['snakemake --help'] - -moduleclass = 'tools' diff --git a/33_scib_pipeline/test-scib-pipeline.sh b/33_scib_pipeline/test-scib-pipeline.sh deleted file mode 100644 index aaac5525..00000000 --- a/33_scib_pipeline/test-scib-pipeline.sh +++ /dev/null @@ -1,14 +0,0 @@ -ml load scib-pipeline - -cd $EBROOTSCIBMINPIPELINE/pipeline/ - -python data/generate_data.py - -# dry run -snakemake --configfile configs/test_data-R4.0.yaml -n - -# readme example -snakemake --configfile configs/test_data-R4.0.yaml --cores 8 > test_pipeline.log 2>&1 - -# github pipeline (one of) -snakemake metrics --configfile configs/test_data-R4.0_small.yaml -kc1 --cores 8 > test_pipeline.log 2>&1 diff --git a/33_scib_pipeline/test_pipeline.log b/33_scib_pipeline/test_pipeline.log deleted file mode 100644 index 7f2f5e7e..00000000 --- a/33_scib_pipeline/test_pipeline.log +++ /dev/null @@ -1,128 +0,0 @@ -/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/site-packages/paramiko/transport.py:236: CryptographyDeprecationWarning: Blowfish has been deprecated - "class": algorithms.Blowfish, -Building DAG of jobs... -Using shell: /usr/bin/bash -Provided cores: 8 -Rules claiming more threads will be scaled down. -Job stats: -job count min threads max threads --------------- ------- ------------- ------------- -metrics 1 1 1 -metrics_single 3 1 1 -total 4 1 1 - -Select jobs to execute... - -[Tue Feb 28 01:13:06 2023] -Job 4: - Metrics hvg=full_feature,method=scanorama,o_type=embed,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv - - -[Tue Feb 28 01:13:06 2023] -Job 6: - Metrics hvg=full_feature,method=bbknn,o_type=knn,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv - - -[Tue Feb 28 01:13:06 2023] -Job 1: - Metrics hvg=full_feature,method=combat,o_type=full,scaling=unscaled,scenario=test_data_r4_small - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv - -Reason: Missing output files: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv - -[Tue Feb 28 01:13:45 2023] -Error in rule metrics_single: - jobid: 6 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/bbknn.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/bbknn_knn.csv -m bbknn -b batch -l celltype --type knn --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -Options - type: full - batch_key: batch - label_key: celltype - assay: expression - organism: mouse - n_hvgs: None - setup: combat_full - optimised clustering results: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full_nmi.txt -reading adata before integration -AnnData object with n_obs × n_vars = 2730 × 3451 - obs: 'paul15_clusters', 'celltype', 'batch', 'n_counts' - uns: 'iroot', 'log1p' - layers: 'counts' -reading adata after integration -AnnData object with n_obs × n_vars = 2730 × 3451 - obs: 'paul15_clusters', 'celltype', 'batch', 'n_counts' - uns: 'iroot', 'log1p' - layers: 'counts' -reduce integrated data: - HVG selection: None - compute neighbourhood graph: True on X_pca - precompute PCA: True -PCA -Nearest Neigbours -computing metrics -type: full - ASW: True - NMI: True - ARI: True - PCR: True - cell cycle: True - iso lab F1: True - iso lab ASW: True - HVGs: True - kBET: True - LISI: True - Trajectory: False -Clustering... -Traceback (most recent call last): - File "/kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/scripts/metrics/metrics.py", line 239, in - results = scib.me.metrics( - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.3-foss-2022a/lib/python3.10/site-packages/scib/metrics/metrics.py", line 293, in metrics - res_max, nmi_max, nmi_all = opt_louvain( - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Deprecated/1.2.13-foss-2022a/lib/python3.10/site-packages/deprecated/classic.py", line 285, in wrapper_function - return wrapped_(*args_, **kwargs_) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib/1.1.3-foss-2022a/lib/python3.10/site-packages/scib/metrics/clustering.py", line 203, in opt_louvain - sc.tl.louvain(adata, resolution=res, key_added=cluster_key) - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scanpy/1.9.1-foss-2022a/lib/python3.10/site-packages/scanpy/tools/_louvain.py", line 151, in louvain - part = louvain.find_partition( - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/lib/python3.10/site-packages/louvain/functions.py", line 68, in find_partition - partition = partition_type(graph, - File "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/lib/python3.10/site-packages/louvain/VertexPartition.py", line 769, in __init__ - self._partition = _c_louvain._new_RBConfigurationVertexPartition(pygraph_t, -BaseException: Could not construct partition: vector::_M_default_append -[Tue Feb 28 01:13:56 2023] -Error in rule metrics_single: - jobid: 1 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/combat.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/combat_full.csv -m combat -b batch -l celltype --type full --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -[Tue Feb 28 01:14:25 2023] -Error in rule metrics_single: - jobid: 4 - input: data/adata_norm.h5ad, /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad - output: /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv - shell: - - python scripts/metrics/metrics.py -u data/adata_norm.h5ad -i /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/integration/unscaled/full_feature/scanorama.h5ad -o /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/scib-pipeline/20221014-foss-2022a/pipeline/data/scib-R4.0_small/test_data_r4_small/metrics/unscaled/full_feature/scanorama_embed.csv -m scanorama -b batch -l celltype --type embed --hvgs 0 --organism mouse --assay expression -v - - (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) - -Exiting because a job execution failed. Look above for error message -Complete log: .snakemake/log/2023-02-28T011304.651790.snakemake.log diff --git a/33_scib_pipeline/trvaep.eb b/33_scib_pipeline/trvaep.eb deleted file mode 100644 index 083b511b..00000000 --- a/33_scib_pipeline/trvaep.eb +++ /dev/null @@ -1,42 +0,0 @@ -# author: Denis Kristak (INUITS) -easyblock = 'PythonBundle' - -name = 'trvaep' -version = '0.1.0' - -homepage = 'https://github.com/theislab/trvaep' -description = "Pipeline for benchmarking atlas-level single-cell integration." - -toolchain = {'name': 'foss', 'version': '2022a'} - -dependencies = [ - ('Python', '3.10.4'), - ('PyTorch', '1.12.0'), - ('SciPy-bundle', '2022.05'), - ('Seaborn', '0.12.1'), - ('scanpy', '1.9.1'), - ('adjustText', '0.7.3'), - ('torchvision', '0.13.1'), - ('matplotlib', '3.5.2'), -] - -use_pip = True -sanity_pip_check = True - -local_trvaep_preinstallopts = "export PYTHONPATH=$PWD:$PYTHONPATH && echo $PYTHONPATH && " -local_trvaep_preinstallopts += "sed -i -e 's/trvaep\.utils/\.\.utils/g' trvaep/model/helper_module.py && " - -exts_list = [ - ('get_version', '3.5.4'), - ('dunamai', '1.15.0'), - ('future-fstrings', '1.2.0', {'sources': [{ - 'download_filename': 'future_fstrings-%(version)s.tar.gz', - 'filename': 'future-fstrings-%(version)s.tar.gz', - }]} - ), - (name, version, { - "preinstallopts": local_trvaep_preinstallopts - }), -] - -moduleclass = 'ai' diff --git a/38_EpiNano/EpiNano.eb b/38_EpiNano/EpiNano.eb deleted file mode 100644 index 75c5176d..00000000 --- a/38_EpiNano/EpiNano.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'Tarball' - -name = 'EpiNano' -local_commit = 'b0bd00d' -version = '1.2.0-20220803' - -homepage = 'https://github.com/novoalab/EpiNano' -description = "Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads" - -toolchain = {'name': 'foss', 'version': '2021b'} - -source_urls = ['https://github.com/novoalab/EpiNano/archive/'] -sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}] -checksums = ['27454a955c58b89bd1330c19a71a0397d6f34f0df38c162b7f875577ab221cca'] - -dependencies = [ - ('Python', '3.9.6'), - ('SciPy-bundle', '2021.10'), # provides numpy, pandas - ('R', '4.1.2'), # provides requires R packages like forcats, stringr, ggplot2, ... - ('Java', '11', '', SYSTEM), - ('minimap2', '2.22'), - ('SAMtools', '1.16.1'), # FIXME 0.1.20? - ('h5py', '3.6.0'), - ('scikit-learn', '1.0.1'), - ('dask', '2022.1.0'), - ('Biopython', '1.79'), - ('Pysam', '0.18.0'), - ('nanopolish', '0.14.0'), -] - -moduleclass = 'bio' diff --git a/38_EpiNano/VBZ-Compression-1.0.2-gompi-2021b.eb b/38_EpiNano/VBZ-Compression-1.0.2-gompi-2021b.eb deleted file mode 100644 index 412cfd39..00000000 --- a/38_EpiNano/VBZ-Compression-1.0.2-gompi-2021b.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'VBZ-Compression' -version = '1.0.2' - -homepage = 'https://github.com/nanoporetech/vbz_compression' -description = "VBZ compression HDF5 plugin for nanopolish" - -toolchain = {'name': 'gompi', 'version': '2021b'} - -source_urls = [ - 'https://github.com/nanoporetech/vbz_compression/archive', - 'https://github.com/lemire/streamvbyte/archive', -] -sources = [ - {'download_filename': '%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}, - {'download_filename': 'v0.5.1.tar.gz', 'filename': 'streamvbyte-v0.5.1.tar.gz'}, -] -checksums = [ - {'VBZ-Compression-1.0.2.tar.gz': 'f803929c79dbf04c041768bf9d3c351e79eb13b8b8f01c63258f8a514d6aad5d'}, - {'streamvbyte-v0.5.1.tar.gz': 'b0f2403582f90b79f4bb37a4835ca3d62e43358d71b09a8f7e7920862faf0709'}, -] - -builddependencies = [('CMake', '3.22.1')] - -dependencies = [ - ('HDF5', '1.12.1'), - ('zstd', '1.5.0'), -] - -preconfigopts = "rmdir %(builddir)s/vbz_compression*/third_party/streamvbyte && " -preconfigopts += "mv %(builddir)s/streamvbyte-* %(builddir)s/streamvbyte && " -preconfigopts += "mv %(builddir)s/streamvbyte %(builddir)s/vbz_compression*/third_party/. && " -configopts = "-DENABLE_CONAN=OFF -DENABLE_PERF_TESTING=OFF -DENABLE_PYTHON=OFF " - -sanity_check_paths = { - 'files': ['hdf5/lib/plugin/libvbz_hdf_plugin.%s' % SHLIB_EXT], - 'dirs': [], -} - -modextrapaths = {'HDF5_PLUGIN_PATH': 'hdf5/lib/plugin/'} - -moduleclass = 'lib' diff --git a/38_EpiNano/nanopolish-0.14.0-foss-2021b.eb b/38_EpiNano/nanopolish-0.14.0-foss-2021b.eb deleted file mode 100644 index d7dd52ab..00000000 --- a/38_EpiNano/nanopolish-0.14.0-foss-2021b.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'MakeCp' - -name = 'nanopolish' -version = '0.14.0' - -homepage = 'https://github.com/jts/nanopolish' -description = "Software package for signal-level analysis of Oxford Nanopore sequencing data." - -toolchain = {'name': 'foss', 'version': '2021b'} - -sources = [ - { - 'source_urls': ['https://github.com/jts/nanopolish/archive/'], - 'download_filename': 'v%(version)s.tar.gz', - 'filename': SOURCE_TAR_GZ, - }, - { - 'source_urls': ['https://github.com/hasindu2008/slow5lib/archive/'], - 'download_filename': 'v0.8.0.tar.gz', - 'filename': 'slow5lib-v0.8.0.tar.gz', - }, -] -checksums = [ - {'nanopolish-0.14.0.tar.gz': 'bcc1a7e2d23941592d817da3af9165b3843ae52b11a3ca5983d6417f1614ef78'}, - {'slow5lib-v0.8.0.tar.gz': '65ffb15234055cbf3a10d97927ebdad2d447df37d9a41d1dd5ca2a4595415eb1'}, -] - -builddependencies = [('Eigen', '3.4.0')] - -dependencies = [ - ('zlib', '1.2.11'), - ('Python', '3.9.6'), - ('Biopython', '1.79'), - ('Pysam', '0.18.0'), - ('HDF5', '1.12.1'), - ('HTSlib', '1.14'), - ('minimap2', '2.22'), - ('VBZ-Compression', '1.0.2'), -] - -prebuildopts = "rmdir slow5lib && ln -s %(builddir)s/slow5lib-*/ slow5lib && " -buildopts = "HDF5=noinstall EIGEN=noinstall HTS=noinstall MINIMAP2=noinstall" - -runtest = 'test ' + buildopts - -files_to_copy = [(['nanopolish'], 'bin'), 'scripts'] - -postinstallcmds = ["chmod a+rx %(installdir)s/scripts/*"] - -sanity_check_paths = { - 'files': ['bin/nanopolish'], - 'dirs': ['scripts'], -} - -sanity_check_commands = ["nanopolish --help"] - -modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/45_IJulia/IJulia-1.23.3-Julia-1.6.3-git.eb b/45_IJulia/IJulia-1.23.3-Julia-1.6.3-git.eb deleted file mode 100644 index 2570a743..00000000 --- a/45_IJulia/IJulia-1.23.3-Julia-1.6.3-git.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'JuliaPackage' - -name = 'IJulia' -version = '1.23.3' -_julia_ver = '1.6.3' -versionsuffix = "-Julia-%s-git" % _julia_ver - -homepage = 'https://github.com/JuliaLang/IJulia.jl' -description = "Julia kernel for Jupyter" - -toolchain = SYSTEM - -sources = [{ - 'filename': SOURCE_TAR_GZ, - 'git_config': { - 'url': 'https://github.com/JuliaLang', - 'repo_name': 'IJulia.jl', - 'tag': 'v%(version)s', - 'keep_git_dir': True, - }, -}] -checksums = [None] - -dependencies = [ - ('Julia', _julia_ver, '-linux-%s' % ARCH, True), -] - -bundle_deps = True - -# install Jupyter kernel system-wide -_kernel_dir = '%(installdir)s/jupyter' -preinstallopts = "mkdir %s && " % _kernel_dir -preinstallopts += "export JUPYTER_DATA_DIR=%s && " % _kernel_dir - -modextrapaths = {'JUPYTER_PATH': 'jupyter'} - -moduleclass = 'lib' diff --git a/45_IJulia/IJulia-1.23.3-Julia-1.6.3.eb b/45_IJulia/IJulia-1.23.3-Julia-1.6.3.eb deleted file mode 100644 index ccc27478..00000000 --- a/45_IJulia/IJulia-1.23.3-Julia-1.6.3.eb +++ /dev/null @@ -1,93 +0,0 @@ -easyblock = 'Bundle' - -name = 'IJulia' -version = '1.23.3' -_julia_ver = '1.6.3' -versionsuffix = "-Julia-%s" % _julia_ver - -homepage = 'https://github.com/JuliaLang/IJulia.jl' -description = "Julia kernel for Jupyter" - -toolchain = SYSTEM - -dependencies = [ - ('Julia', _julia_ver, '-linux-%s' % ARCH, True), -] - -# install Jupyter kernel system-wide -_kernel_dir = '%(installdir)s/jupyter' -_ijulia_preinstall = "mkdir %s && " % _kernel_dir -_ijulia_preinstall += "export JUPYTER_DATA_DIR=%s && " % _kernel_dir - -exts_defaultclass = 'JuliaPackage' -exts_filter = ("julia -e 'using %(ext_name)s'", "") -exts_default_options = { - 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}], -} - - -exts_list = [ - ('Parsers', '2.4.2', { - 'source_urls': ['https://github.com/JuliaData/Parsers.jl/archive/'], - 'checksums': ['44036a59b047f704d6b7841e3edf12fe2a53aa797254086fdd0709f0cdebac89'], - }), - ('JSON', '0.21.3', { - 'source_urls': ['https://github.com/JuliaIO/JSON.jl/archive/'], - 'checksums': ['bd02a015da24b03f79d55967b29f5ceaba2477b559242576d74f02623bb1b6b1'], - }), - ('MbedTLS', '1.1.7', { - 'source_urls': ['https://github.com/JuliaLang/MbedTLS.jl/archive/'], - 'checksums': ['3df27a16ea31acf4eaf6cc9f3bd25b81960c10662722ffa22b13cb0e6ac11b12'], - }), - ('VersionParsing', '1.3.0', { - 'source_urls': ['https://github.com/JuliaInterop/VersionParsing.jl/archive/'], - 'checksums': ['f90fe419e1a40ef0eccfaaed1d1b7792d9115a059a82d0c23e3c04c944d0f8ca'], - }), - ('Conda', '1.7.0', { - 'source_urls': ['https://github.com/JuliaPy/Conda.jl/archive/'], - 'checksums': ['2077b1192e1cfa206caf441d9d91b0ca83aa935db89918f1fd69cd25c2415ced'], - }), - ('SoftGlobalScope', '1.1.0', { - 'source_urls': ['https://github.com/stevengj/SoftGlobalScope.jl/archive/'], - 'checksums': ['8d4264386c859403938498cd9ddd5e94e10181deba4a3e71d391b16750e3848b'], - }), - ('Preferences', '1.3.0', { - 'source_urls': ['https://github.com/JuliaPackaging/Preferences.jl/archive/'], - 'checksums': ['a87c1fc863fcb6240c3f4327776fa01a1f87e0d2df5a0c1850f789ce24469da2'], - }), - ('JLLWrappers', '1.4.1', { - 'source_urls': ['https://github.com/JuliaPackaging/JLLWrappers.jl/archive/'], - 'checksums': ['2cb61d4171e8ebc74e36ee20e6e0ba959aa5525a9c2fef5547e0993566018775'], - }), - ('libsodium_jll', '1.0.20+0', { - 'source_urls': ['https://github.com/JuliaBinaryWrappers/libsodium_jll.jl/archive/'], - 'sources': [{'filename': 'libsodium-v%(version)s.tar.gz'}], - 'checksums': ['f7c3a17acc3a478ec10a4a49a0dd04694140f4483644ec9db638706ea9844aba'], - }), - ('ZeroMQ_jll', '4.3.4+0', { - 'source_urls': ['https://github.com/JuliaBinaryWrappers/ZeroMQ_jll.jl/archive/'], - 'sources': [{'filename': 'ZeroMQ-v%(version)s.tar.gz'}], - 'checksums': ['aa98ae3c7e050fc6bdf0b0132bb607dea2f6c062da7870b1ecada9f3c8ea8d72'], - }), - ('ZMQ', '1.2.1', { - 'source_urls': ['https://github.com/JuliaInterop/ZMQ.jl/archive/'], - 'checksums': ['8b42555340d0208e5a36cd5e8f29a3f0d44c13c064382d4b1e5d00c1c4a9dd96'], - }), - ('IJulia', version, { - 'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'], - 'checksums': ['9b7cb6f5a872697104c32612a3970d6d4effb9c6327fa9f960d8867ff5472889'], - 'preinstallopts': _ijulia_preinstall, - }), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['packages'], -} - -modextrapaths = { - 'JULIA_DEPOT_PATH': '', - 'JUPYTER_PATH': 'jupyter', -} - -moduleclass = 'lib' diff --git a/45_IJulia/juliapackage.py b/45_IJulia/juliapackage.py deleted file mode 100644 index 8a6bf55f..00000000 --- a/45_IJulia/juliapackage.py +++ /dev/null @@ -1,169 +0,0 @@ -## -# Copyright 2022-2022 Vrije Universiteit Brussel -# -# This file is part of EasyBuild, -# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), -# with support of Ghent University (http://ugent.be/hpc), -# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be), -# Flemish Research Foundation (FWO) (http://www.fwo.be/en) -# and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). -# -# https://github.com/easybuilders/easybuild -# -# EasyBuild is free software: you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation v2. -# -# EasyBuild is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with EasyBuild. If not, see . -## -""" -EasyBuild support for Julia Packages, implemented as an easyblock - -@author: Alex Domingo (Vrije Universiteit Brussel) -""" -import glob -import os - -from distutils.version import LooseVersion - -import easybuild.tools.environment as env -from easybuild.framework.easyconfig import CUSTOM -from easybuild.framework.extensioneasyblock import ExtensionEasyBlock -from easybuild.tools.build_log import EasyBuildError -from easybuild.tools.modules import get_software_root, get_software_version -from easybuild.tools.filetools import copy_dir -from easybuild.tools.run import run_cmd - -EXTS_FILTER_JULIA_PACKAGES = ("julia -e 'using %(ext_name)s'", "") - -class JuliaPackage(ExtensionEasyBlock): - """Builds and installs Julia Packages.""" - - @staticmethod - def extra_options(extra_vars=None): - """Extra easyconfig parameters specific to JuliaPackage.""" - extra_vars = ExtensionEasyBlock.extra_options(extra_vars=extra_vars) - extra_vars.update({ - 'bundle_deps': [False, "Let Julia download and bundle all needed dependencies for this installation", CUSTOM], - }) - return extra_vars - - def __init__(self, *args, **kwargs): - """JuliaPackage easyblock constructor.""" - super(JuliaPackage, self).__init__(*args, **kwargs) - - def set_pkg_offline(self): - """Enable offline mode of Julia Pkg""" - if get_software_root('Julia') is None: - raise EasyBuildError("Julia not included as dependency!") - - if not self.cfg['bundle_deps']: - julia_version = get_software_version('Julia') - if LooseVersion(julia_version) >= LooseVersion('1.5'): - # Enable offline mode of Julia Pkg - # https://pkgdocs.julialang.org/v1/api/#Pkg.offline - env.setvar('JULIA_PKG_OFFLINE', 'true') - else: - errmsg=( - "Cannot set offline mode in Julia v%s (needs Julia >= 1.5). " - "Enable easyconfig option 'bundle_deps' to allow installation " - "with any extra downloaded dependencies." - ) - raise EasyBuildError(errmsg, julia_version) - - def prepare_step(self, *args, **kwargs): - """Prepare for installing Julia package.""" - super(JuliaPackage, self).prepare_step(*args, **kwargs) - self.set_pkg_offline() - - def configure_step(self): - """No separate configuration for JuliaPackage.""" - pass - - def build_step(self): - """No separate build procedure for JuliaPackage.""" - pass - - def test_step(self): - """No separate (standard) test procedure for JuliaPackage.""" - pass - - def install_julia_pkg(self): - """Install procedure for Julia packages with Pkg""" - - # prepend installation directory to Julia DEPOT_PATH - # see https://docs.julialang.org/en/v1/manual/environment-variables/#JULIA_DEPOT_PATH - env.setvar('JULIA_DEPOT_PATH', ':'.join([self.installdir, os.getenv('JULIA_DEPOT_PATH', '')])) - - # command sequence for Julia.Pkg - julia_pkg_cmd = ['using Pkg'] - if os.path.isdir(os.path.join(self.start_dir, '.git')): - # sources from git repos can be installed as any remote package - self.log.debug('Installing Julia package in normal mode (Pkg.add)') - - julia_pkg_cmd.extend([ - # install package from local path preserving existing dependencies - 'Pkg.add(url="%s"; preserve=Pkg.PRESERVE_ALL)' % self.start_dir, - ]) - else: - # plain sources have to be installed in develop mode - # copy sources to install directory and install - self.log.debug('Installing Julia package in develop mode (Pkg.develop)') - - install_pkg_path = os.path.join(self.installdir, 'packages', self.name) - copy_dir(self.start_dir, install_pkg_path) - - julia_pkg_cmd.extend([ - 'Pkg.develop(PackageSpec(path="%s"))' % install_pkg_path, - 'Pkg.build("%s")' % self.name, - ]) - julia_pkg_cmd = ';'.join(julia_pkg_cmd) - - install_cmd = "julia -e '%s'" % julia_pkg_cmd - - cmd = ' '.join([self.cfg['preinstallopts'], install_cmd, self.cfg['installopts']]) - - (out, _) = run_cmd(cmd, log_all=True, simple=False) - - return out - - def install_step(self): - """Install Julia package""" - self.install_julia_pkg() - - def run(self): - """Install Julia package as an extension.""" - - if not self.src: - errmsg = "No source found for Julia package %s, require d for installation. (src: %s)" - raise EasyBuildError(errmsg, self.name, self.src) - ExtensionEasyBlock.run(self, unpack_src=True) - - self.set_pkg_offline() - self.install_julia_pkg() - - def sanity_check_step(self, *args, **kwargs): - """Custom sanity check for JuliaPackage""" - - pkg_dir = os.path.join('packages', self.name) - - custom_paths = { - 'files': [], - 'dirs': [pkg_dir], - } - kwargs.update({'custom_paths': custom_paths}) - - return ExtensionEasyBlock.sanity_check_step(self, EXTS_FILTER_JULIA_PACKAGES, *args, **kwargs) - - def make_module_extra(self): - """Prepend installation directory to JULIA_DEPOT_PATH in module file.""" - txt = super(JuliaPackage, self).make_module_extra() - txt += self.module_generator.prepend_paths('JULIA_DEPOT_PATH', ['']) - return txt - diff --git a/53_DIA-DN/DIA-NN.eb b/53_DIA-DN/DIA-NN.eb deleted file mode 100644 index 5c0fd959..00000000 --- a/53_DIA-DN/DIA-NN.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'Rpm' - -name = 'DIA-NN' -version = '1.8.1' - -homepage = 'https://github.com/vdemichev/DiaNN' -description = "DIA-NN - a universal software for data-independent acquisition (DIA) proteomics data processing" - -toolchain = SYSTEM - -source_urls = ['https://github.com/vdemichev/DiaNN/releases/download/%(version)s/'] -sources = ['diann_%(version)s.rpm'] -checksums = ['a5362b3c3cb4db3f3cebda16f71b5c96e3d08dd30506cdd2f8ea7d9113536194'] - -sanity_check_paths = { - 'files': ['usr/diann/%(version)s/diann-%(version)s'], - 'dirs': [], -} - -sanity_check_commands = [ - "diann-%(version)s | grep 'DIA-NN %(version)s'", -] - -modextrapaths = { - 'PATH': ['usr/diann/%(version)s'], -} - -moduleclass = 'bio' diff --git a/87_Slicer/Slicer.eb b/87_Slicer/Slicer.eb deleted file mode 100644 index 8700cdfe..00000000 --- a/87_Slicer/Slicer.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Slicer' -version = '5.2.1' - -homepage = 'https://www.slicer.org' -description = "Multi-platform, free open source software for visualization and image computing. " - -toolchain = {'name': 'foss', 'version': '2022a'} - -source_urls = ['https://github.com/Slicer/Slicer/archive/refs/tags/'] -sources = ['v%(version)s.tar.gz'] -checksums = ['988b5d3c97a30feaa726e1ac2275ce4b085c0d8f3cee33efd0576316febb7e13'] - -builddependencies = [ - ('CMake', '3.24.3'), -] - -dependencies = [ - ('Qt5', '5.15.5'), - ('VTK', '9.2.2'), -] - -configopts = "-DSlicer_SUPERBUILD=OFF -DQt5_DIR=$EBROOTQT5" - -moduleclass = 'vis' diff --git a/99_Q-Chem/Q-Chem-6.0.2.eb b/99_Q-Chem/Q-Chem-6.0.2.eb deleted file mode 100644 index e373c972..00000000 --- a/99_Q-Chem/Q-Chem-6.0.2.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'Bundle' - -name = 'Q-Chem' -version = '6.0.2' - -homepage = 'https://www.q-chem.com' -description = """Q-Chem is a comprehensive ab initio quantum chemistry software for accurate -predictions of molecular structures, reactivities, and vibrational, electronic -and NMR spectra.""" - -# Install a module to set up the environment of an existing installation of Q-Chem -# *This easyconfig does not install Q-Chem* - -toolchain = SYSTEM - -sanity_check_paths = { - 'files': ['bin/qchem'], - 'dirs': ['qcaux'], -} - -# Emulate environment set by $QC/qcenv.sh -# some variables defined in $QC/config/shellvar.txt -modextrapaths = { - 'PATH': ['bin', 'exe'], - 'QC': '', - 'QCAUX': 'qcaux', - 'QCPROG_S': 'exe/qcprog.exe_s', - # 'BRIANQC_INSTALL_PATH': 'brianqc_qchem', # GPU enabled installations -} -modextravars = { - 'QCPLATFORM': 'LINUX_Ix86_64', - 'QCMPI': 'seq', - 'QCRSH': 'ssh', - # setting QCLOCALSCR will disable the shared scratch QCSCRATCH - # 'QCLOCALSCR': '/local', -} -modluafooter = 'setenv("QCSCRATCH", os.getenv("VSC_SCRATCH"))' - -moduleclass = 'chem'