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Segmentation fault (core dumped) when start velocyto #98

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wulabupenn opened this issue Aug 21, 2018 · 8 comments
Closed

Segmentation fault (core dumped) when start velocyto #98

wulabupenn opened this issue Aug 21, 2018 · 8 comments

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@wulabupenn
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Hi,

I received the following error message when I type velocyto --help
image

I checked the issue #53 then I modify the setup.py file, but I got another error message in below:
Segmentation fault (core dumped)

@gioelelm
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gioelelm commented Aug 21, 2018 via email

@wulabupenn
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Thank you for the prompt reply. I will have a try from scratch.

@galib36
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galib36 commented Oct 8, 2018

Hi,
When I run velocyto --help, I see Segmentation fault (core dumped) error. How can I solve the problem?

@gioelelm
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gioelelm commented Oct 8, 2018

Hi,
Could you please specify how you installed velocyto? Did you use conda to install the dependencies?

@galib36
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galib36 commented Oct 8, 2018

Hello gioelelm,
Yes, I installed all the dependencies using conda and then installed velocyto using pip.

@galib36
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galib36 commented Oct 8, 2018

Hello gioelelm,
I have solved the issue, needed to install gcc-5 with the command conda install -c psi4 gcc-5 and then conda install -c anaconda libgcc

@gioelelm
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gioelelm commented Oct 8, 2018

Great!

@gioelelm gioelelm closed this as completed Oct 8, 2018
@galib36
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galib36 commented Nov 16, 2018

Hello gioelelm,
After I updated my conda I am again getting the Segmentation fault (core dumped) error. The solution that I used previously is not working now. Can you please suggest me how to fix it.

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