DESCRIPTION file Error for Phyloseq

[grabear]

I will try to reproduce this later, but I was having trouble building the package on my laptop. My laptop didn't have phyloseq installed at the time, and I was unable to build the package. I tried so many things in order to get it to install as a dependency of our package, but in the end I had to manually install it.

TODO:

• Reproduce this bug.
• Find a way to fix this bug
  • Installation hooks?

[sdhutchins]

Interesting. I'll test it out at home. R version maybe?

[grabear]

I don't think it's the R version, because I was able to install it manually. It's something to do with biocunductor or the DESCRIPTION file or devtools:: or remotes::....

I tried:

Remotes: bioc::phyloseq

Remotes: github::joey711/phyloseq

Imports: phyloseq

Depends: phyloseq

biocViews:

Additional_repositories:
    http://bioconductor.org/packages/release/bioc/,
    http://bioconductor.org/packages/release/data/annotation,
    http://bioconductor.org/packages/release/data/experiment,
    http://bioconductor.org/packages/release/extra

Anyways, here are some links:
r-lib/devtools#1401
https://cran.r-project.org/web/packages/devtools/vignettes/dependencies.html
https://github.com/r-lib/remotes
r-lib/devtools#1307
r-lib/devtools#700
r-infra/pkglock#6
ncchung/jackstraw#2

[sdhutchins]

hmmmm

[sdhutchins]

I added travis ci integration to help debug this a bit. https://travis-ci.com/vallenderlab/MicrobiomeR

[grabear]

#7

[grabear]

As far as everything is currently going, I'm not having issues with this anymore. I'm not sure what fixed the problem, but I will look into this again, when we start testing.

[grabear]

What did you do to fix this? @sdhutchins

[sdhutchins]

This has resolved itself.