build-tribble.xml

<?xml version="1.0" encoding="UTF-8"?>
<!--
  ~ The MIT License
  ~
  ~ Copyright (c) 2010 The Broad Institute
  ~
  ~ Permission is hereby granted, free of charge, to any person obtaining a copy
  ~ of this software and associated documentation files (the "Software"), to deal
  ~ in the Software without restriction, including without limitation the rights
  ~ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  ~ copies of the Software, and to permit persons to whom the Software is
  ~ furnished to do so, subject to the following conditions:
  ~
  ~ The above copyright notice and this permission notice shall be included in
  ~ all copies or substantial portions of the Software.
  ~
  ~ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  ~ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  ~ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  ~ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  ~ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  ~ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
  ~ THE SOFTWARE.
  -->

<project name="tribble" basedir="." default="all">

    <property name="src" value="src"/>
    <property name="src.test" value="${src}/tests/java"/>

    <property name="lib" value="lib"/>
    <property name="dist" value="dist"/>
    <property name="classes" value="classes"/>
    <property name="classes.test" value="testclasses"/>
    <property name="reports" value="dist/test"/>
    <property name="javac.debug" value="true"/>
    <property name="javac.target" value="1.6"/>
    <property name="tribble-version" value="0"/>
    <property name="singleTest" value="*" /> <!-- used to determine what tests to run -->
<!-- INIT -->
    <target name="init">
        <path id="classpath">
            <fileset dir="${lib}">
                <include name="**/*.jar"/>
            </fileset>
        </path>
    </target>

<!-- CLEAN -->
    <target name="clean">
        <delete dir="${classes}"/>
        <delete dir="${classes.test}"/>
        <delete  dir="${dist}"/>
        <delete  dir="javadoc"/>
    </target>

<!-- COMPILE -->
	<target name="compile" depends="init" description="Compile tribble files">
    	<echo message="os.name:          ${os.name}"          />
		<echo message="basdir:           ${basedir}"          />
		<echo message="ant.file:         ${ant.file}"         />
		<echo message="ant.project.name: ${ant.project.name}" />
		<echo message="ant.java.version: ${ant.java.version}" />

        <mkdir dir="${classes}"/>
        <javac destdir="${classes}"
               debug="${javac.debug}"
               target="${javac.target}"
               source="${javac.target}">
            <src path="${src}"/>
            <classpath refid="classpath"/>
        </javac>
    </target>

    <target name="compile-tests" depends="compile" description="Compile test files">
        <mkdir dir="${classes.test}"/>
        <javac destdir="${classes.test}"
               debug="${javac.debug}"
               target="${javac.target}"
               source="${javac.target}"
               srcdir="${src.test}">
          <compilerarg value="-Xlint:all"/>
          <include name="org/broad/tribble/**/*"/>
          <classpath>
            <path refid="classpath"/>
            <pathelement location="${classes}"/>
          </classpath>
        </javac>
    </target>

    <!-- TEST -->
    <target name="test" depends="compile,compile-tests" description="Run unit tests">
        <taskdef resource="testngtasks" classpathref="classpath"/>
        <testng classpathref="classpath"
                outputDir="${reports}"
                haltOnFailure="true" verbose="2"
                workingDir="${basedir}">
            <jvmarg value="-Xmx1g"/>
            <jvmarg value="-Djava.awt.headless=true" />
            <jvmarg value="-Xdebug -verbose"/>
            <jvmarg value="-Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005"/>

            <classpath>
                <pathelement path="${classes}"/>
                <pathelement path="${classes.test}"/>
            </classpath>
            <classfileset dir="${classes.test}" includes="**/${singleTest}.class"/>
        </testng>

        <!-- generate a report for Bamboo or Hudson to read in -->
        <junitreport  todir="${reports}">
            <fileset dir="${reports}">
                <include name="*/*.xml"/>
            </fileset>
            <report format="noframes"  todir="${reports}"/>
        </junitreport>
    </target>


<!-- CREATE JAR -->
    <target name="tribble-jar" depends="compile"
            description="Builds tribble-${tribble-version}.jar for inclusion in other projects">
        <mkdir dir="${dist}"/>
        <jar destfile="${dist}/tribble-${tribble-version}.jar" compress="no">
            <fileset dir="${classes}" includes="org/broad/tribble/**/*.*"/>
        </jar>
        <copy todir="${dist}">
                <fileset dir="lib" includes="*.jar"/>
        </copy>
        <jar destfile="${dist}/CountRecords.jar" compress="no">
            <fileset dir="${classes}" includes="org/broad/tribble/**/*.*"/>
            <manifest>
                <attribute name="Class-Path" value="log4j-1.2.15.jar"/>
                <attribute name="Main-Class" value="org.broad.tribble.example.CountRecords" />
          </manifest>
        </jar>
        <jar destfile="${dist}/IndicesAreEqual.jar" compress="no">
            <fileset dir="${classes}" includes="org/broad/tribble/**/*.*"/>
            <manifest>
                <attribute name="Class-Path" value="log4j-1.2.15.jar"/>
                <attribute name="Main-Class" value="org.broad.tribble.example.IndicesAreEqual" />
          </manifest>
        </jar>

        <jar destfile="${dist}/IndexToTable.jar" compress="no">
            <fileset dir="${classes}" includes="org/broad/tribble/**/*.*"/>
            <manifest>
                <attribute name="Class-Path" value="log4j-1.2.15.jar"/>
                <attribute name="Main-Class" value="org.broad.tribble.example.IndexToTable" />
          </manifest>
        </jar>

        <jar destfile="${dist}/ProfileIndexReading.jar" compress="no">
            <fileset dir="${classes}" includes="org/broad/tribble/**/*.*"/>
            <manifest>
                <attribute name="Class-Path" value="log4j-1.2.15.jar"/>
                <attribute name="Main-Class" value="org.broad.tribble.example.ProfileIndexReading" />
          </manifest>
        </jar>
    </target>

<!-- JAVADOC -->
    <target name="javadoc" depends="init" description="Generates the project javadoc.">
        <javadoc
           sourcepath="${src}"
           destdir="javadoc"
           packagenames="org.broad.tribble.*"
           windowtitle="Tribble API Documentation"
           doctitle="&lt;h1&gt;Tribble API Documentation&lt;/h1&gt;"
           author="true"
           protected="true"
           use="true"
           version="true">
          <classpath location="${java.home}/../lib/tools.jar"/>
          <link href="http://java.sun.com/j2se/1.5.0/docs/api/"/>
          </javadoc>
        </target>

<!-- ALL -->
    <target name="all" depends="compile, tribble-jar" description="Default build target">
    </target>

</project>