---
### geoschem_config.yml: GEOS-Chem Runtime configuration options.
### Customized for simulations using the KPP "fullchem" mechanism.
###
### NOTE: Add quotes around nitrogen oxide ('NO'), because YAML
### parsers will confuse this with a negative "no" value.

#============================================================================
# Simulation settings
#============================================================================
simulation:
  name: fullchem
  start_date: [20291201, 000000]
  end_date: [20300101, 000000]
  root_data_dir: /root/autodl-tmp/ExtData
  met_field: ModelE2.1
  species_database_file: ./species_database.yml
  species_metadata_output_file: OutputDir/geoschem_species_metadata.yml
  verbose:
    activate: false
    on_cores: root       # Allowed values: root all
  use_gcclassic_timers: false

#============================================================================
# Grid settings
#============================================================================
grid:
  resolution: 2.0x2.5
  number_of_levels: 40
  longitude:
    range: [-180.0, 180.0]
    center_at_180: false
  latitude:
    range: [-90.0, 90.0]
    half_size_polar_boxes: false
  nested_grid_simulation:
    activate: false
    buffer_zone_NSEW: [0, 0, 0, 0]

#============================================================================
# Timesteps settings
#============================================================================
timesteps:
  transport_timestep_in_s: 600
  chemistry_timestep_in_s: 1200
  radiation_timestep_in_s: 10800

#============================================================================
# Settings for GEOS-Chem operations
#============================================================================
operations:

  chemistry:
    activate: true
    linear_chemistry_aloft:
      activate: true
      use_linoz_for_O3: true
    active_strat_H2O:
      activate: true
      use_static_bnd_cond: true
    gamma_HO2: 0.2
    autoreduce_solver:
      activate: false
      use_target_threshold:
        activate: true
        oh_tuning_factor: 0.00005
        no2_tuning_factor: 0.0001
      use_absolute_threshold:
        scale_by_pressure: true
        absolute_threshold: 100.0
      keep_halogens_active: false
      append_in_internal_timestep: false

  convection:
    activate: true

  dry_deposition:
    activate: true
    CO2_effect:
      activate: false
      CO2_level: 600.0
      reference_CO2_level: 380.0
    diag_alt_above_sfc_in_m: 10

  pbl_mixing:
     activate: true
     use_non_local_pbl: true 

  photolysis:
    activate: true
    num_levs_with_cloud: 28
    input_directories:
      fastjx_input_dir: /root/autodl-tmp/ExtData/CHEM_INPUTS/FAST_JX/v2024-05/
      cloudj_input_dir: /root/autodl-tmp/ExtData/CHEM_INPUTS/CLOUD_J/v2023-05/
    overhead_O3:
      use_online_O3_from_model: true 
      use_column_O3_from_met: true
      use_TOMS_SBUV_O3: false
    photolyze_nitrate_aerosol:
      activate: true
      NITs_Jscale: 100.0
      NIT_Jscale: 100.0
      percent_channel_A_HONO: 66.667
      percent_channel_B_NO2: 33.333

  rrtmg_rad_transfer_model:
    activate: false
    aod_wavelengths_in_nm:
      - 550
    longwave_fluxes: false
    shortwave_fluxes: false
    clear_sky_flux: false
    all_sky_flux: false
    fixed_dyn_heating: false
    seasonal_fdh: false
    read_dyn_heating: false
    co2_ppmv: 390.0

  transport:
    gcclassic_tpcore:                 # GEOS-Chem Classic only
      activate: true                  # GEOS-Chem Classic only
      fill_negative_values: true      # GEOS-Chem Classic only
      iord_jord_kord: [3, 3, 7]       # GEOS-Chem Classic only
    transported_species:
      - ACET
      - ACTA
      - AERI
      - ALD2
      - ALK4
      - AONITA
      - AROMP4
      - AROMP5
      - ATOOH
      - BALD
      - BCPI
      - BCPO
      - BENZ
      - BENZP
      - Br
      - Br2
      - BrCl
      - BrNO2
      - BrNO3
      - BrO
      - BrSALA
      - BrSALC
      - BUTDI
      - BZCO3H
      - BZPAN
      - C2H2
      - C2H4
      - C2H6
      - C3H8
      - CCl4
      - CFC11
      - CFC113
      - CFC114
      - CFC115
      - CFC12
      - CH2Br2
      - CH2Cl2
      - CH2I2
      - CH2IBr
      - CH2ICl
      - CH2O
      - CH3Br
      - CH3CCl3
      - CH3Cl
      - CH3I
      - CH4
      - CHBr3
      - CHCl3
      - Cl
      - Cl2
      - Cl2O2
      - ClNO2
      - ClNO3
      - ClO
      - ClOO
      - CLOCK
      - CO
      - CSL
      - DMS
      - DST1
      - DST2
      - DST3
      - DST4
      - EOH
      - ETHLN
      - ETHN
      - ETHP
      - ETNO3
      - ETP
      - FURA
      - GLYC
      - GLYX
      - H1211
      - H1301
      - H2402
      - H2O
      - H2O2
      - HAC
      - HBr
      - HC5A
      - HCFC123
      - HCFC141b
      - HCFC142b
      - HCFC22
      - HCl
      - HCOOH
      - HI
      - HMHP
      - HMML
      - HMS
      - HNO2
      - HNO3
      - HNO4
      - HOBr
      - HOCl
      - HOI
      - HONIT
      - HPALD1
      - HPALD2
      - HPALD3
      - HPALD4
      - HPETHNL
      - I
      - I2
      - I2O2
      - I2O3
      - I2O4
      - IBr
      - ICHE
      - ICl
      - ICN
      - ICPDH
      - IDC
      - IDCHP
      - IDHDP
      - IDHPE
      - IDN
      - IEPOXA
      - IEPOXB
      - IEPOXD
      - IHN1
      - IHN2
      - IHN3
      - IHN4
      - INDIOL
      - INO
      - INPB
      - INPD
      - IO
      - IONITA
      - IONO
      - IONO2
      - IPRNO3
      - ISALA
      - ISALC
      - ISOP
      - ITCN
      - ITHN
      - LIMO
      - LVOC
      - LVOCOA
      - MACR
      - MACR1OOH
      - MAP
      - MCRDH
      - MCRENOL
      - MCRHN
      - MCRHNB
      - MCRHP
      - MCT
      - MEK
      - MENO3
      - MGLY
      - MOH
      - MONITA
      - MONITS
      - MONITU
      - MP
      - MPAN
      - MPN
      - MSA
      - MTPA
      - MTPO
      - MVK
      - MVKDH
      - MVKHC
      - MVKHCB
      - MVKHP
      - MVKN
      - MVKPC
      - N2O
      - N2O5
      - NH3
      - NH4
      - NIT
      - NITs
      - 'NO'
      - NO2
      - NO3
      - NPHEN
      - NPRNO3
      - O3
      - OClO
      - OCPI
      - OCPO
      - OCS
      - OIO
      - PAN
      - pFe
      - PHEN
      - PIP
      - PP
      - PPN
      - PROPNN
      - PRPE
      - PRPN
      - PYAC
      - R4N2
      - R4P
      - RA3P
      - RB3P
      - RCHO
      - RIPA
      - RIPB
      - RIPC
      - RIPD
      - RP
      - SALA
      - SALAAL
      - SALACL
      - SALC
      - SALCAL
      - SALCCL
      - SO2
      - SO4
      - SO4s
      - SOAGX
      - SOAIE
      - SOAP
      - SOAS
      - TOLU
      - XYLE

  wet_deposition:
    activate: true

#============================================================================
# Settings for GEOS-Chem aerosols
#============================================================================
aerosols:

  carbon:
    activate: true
    brown_carbon: false
    enhance_black_carbon_absorption:
      activate: true
      hydrophilic: 1.5
      hydrophobic: 1.0

  complex_SOA:
    activate:  false
    semivolatile_POA: false

  dust:
    activate: true
    acid_uptake_on_dust: false

  sea_salt:
    activate: true
    SALA_radius_bin_in_um: [0.01, 0.5]
    SALC_radius_bin_in_um: [0.5,  8.0]
    marine_organic_aerosols: false

  stratosphere:
    settle_strat_aerosol: true
    polar_strat_clouds:
      activate: true
      het_chem: true
    allow_homogeneous_NAT: false
    NAT_supercooling_req_in_K: 3.0
    supersat_factor_req_for_ice_nucl: 1.2
    calc_strat_aod: true

  sulfate:
    activate: true
    metal_cat_SO2_oxidation: true

#============================================================================
# Settings for diagnostics (other than HISTORY and HEMCO)
#============================================================================
extra_diagnostics:

  obspack:
    activate: false
    quiet_logfile_output: false
    input_file: ./obspack_input_for_testing.20190701.nc
    output_file: ./OutputDir/GEOSChem.ObsPack.YYYYMMDD_hhmmz.nc4
    output_species:
      - CO
      - 'NO'
      - O3

  planeflight:
    activate: false
    flight_track_file: Planeflight.dat.YYYYMMDD
    output_file: ./OutputDir/plane.log.YYYYMMDD