System OS: Windows 10, Architecture: AMD64 Java Info: 17.0.10, OpenJDK 64-Bit Server VM, Eclipse Adoptium .NET Core Info: 6.0.15 Version info: FragPipe version 22.0 MSFragger version 4.1 IonQuant version 1.10.27 diaTracer version 1.1.5 Philosopher version 5.1.1 LCMS files: Experiment/Group: HC1 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_HC1.mzML DDA Experiment/Group: HC10 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_6.mzML DDA Experiment/Group: HC11 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_7.mzML DDA Experiment/Group: HC12 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_8_20210401021911.mzML DDA Experiment/Group: HC13 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_9.mzML DDA Experiment/Group: HC14 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC10.mzML DDA Experiment/Group: HC15 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC11.mzML DDA Experiment/Group: HC16 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC12.mzML DDA Experiment/Group: HC17 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC13.mzML DDA Experiment/Group: HC18 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC14.mzML DDA Experiment/Group: HC19 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC15.mzML DDA Experiment/Group: HC2 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_HC2.mzML DDA Experiment/Group: HC20 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC16.mzML DDA Experiment/Group: HC21 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC17.mzML DDA Experiment/Group: HC22 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC1_20210513132744.mzML DDA Experiment/Group: HC23 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC2_20210513153447.mzML DDA Experiment/Group: HC24 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC3_20210513174150.mzML DDA Experiment/Group: HC25 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC4.mzML DDA Experiment/Group: HC26 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC5.mzML DDA Experiment/Group: HC27 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC6.mzML DDA Experiment/Group: HC28 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC7.mzML DDA Experiment/Group: HC29 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC8.mzML DDA Experiment/Group: HC3 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_HC3.mzML DDA Experiment/Group: HC30 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_HC9.mzML DDA Experiment/Group: HC4 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_10.mzML DDA Experiment/Group: HC5 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_1_20210330145706.mzML DDA Experiment/Group: HC6 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_2_20210330170407.mzML DDA Experiment/Group: HC7 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_3.mzML DDA Experiment/Group: HC8 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_4.mzML DDA Experiment/Group: HC9 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_HC_5.mzML DDA Experiment/Group: RA1 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_NEG1.mzML DDA Experiment/Group: RA10 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_N_4.mzML DDA Experiment/Group: RA11 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_N_5.mzML DDA Experiment/Group: RA12 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_1.mzML DDA Experiment/Group: RA13 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_10.mzML DDA Experiment/Group: RA14 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_11.mzML DDA Experiment/Group: RA15 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_12.mzML DDA Experiment/Group: RA16 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_13.mzML DDA Experiment/Group: RA17 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_2.mzML DDA Experiment/Group: RA18 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_3.mzML DDA Experiment/Group: RA19 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_4.mzML DDA Experiment/Group: RA2 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_NEG2.mzML DDA Experiment/Group: RA20 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_5.mzML DDA Experiment/Group: RA21 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_6.mzML DDA Experiment/Group: RA22 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_7.mzML DDA Experiment/Group: RA23 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_8.mzML DDA Experiment/Group: RA24 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_P_9.mzML DDA Experiment/Group: RA25 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG1.mzML DDA Experiment/Group: RA26 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG2.mzML DDA Experiment/Group: RA27 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG3.mzML DDA Experiment/Group: RA28 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG4.mzML DDA Experiment/Group: RA29 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG5.mzML DDA Experiment/Group: RA3 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_NEG3.mzML DDA Experiment/Group: RA30 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG6.mzML DDA Experiment/Group: RA31 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_NEG7.mzML DDA Experiment/Group: RA32 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS1.mzML DDA Experiment/Group: RA33 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS10.mzML DDA Experiment/Group: RA34 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS11.mzML DDA Experiment/Group: RA35 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS12.mzML DDA Experiment/Group: RA36 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS13.mzML DDA Experiment/Group: RA37 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS14.mzML DDA Experiment/Group: RA38 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS15.mzML DDA Experiment/Group: RA39 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS16.mzML DDA Experiment/Group: RA4 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_POS1.mzML DDA Experiment/Group: RA40 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS17.mzML DDA Experiment/Group: RA41 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS18.mzML DDA Experiment/Group: RA42 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS19.mzML DDA Experiment/Group: RA43 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS2.mzML DDA Experiment/Group: RA44 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS20.mzML DDA Experiment/Group: RA45 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS21.mzML DDA Experiment/Group: RA46 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS22.mzML DDA Experiment/Group: RA47 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS23.mzML DDA Experiment/Group: RA48 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS24.mzML DDA Experiment/Group: RA49 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS25.mzML DDA Experiment/Group: RA5 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_POS2.mzML DDA Experiment/Group: RA50 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS26.mzML DDA Experiment/Group: RA51 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS27.mzML DDA Experiment/Group: RA52 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS28.mzML DDA Experiment/Group: RA53 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML DDA Experiment/Group: RA54 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS3.mzML DDA Experiment/Group: RA55 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS4.mzML DDA Experiment/Group: RA56 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS5.mzML DDA Experiment/Group: RA57 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS6.mzML DDA Experiment/Group: RA58 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS7.mzML DDA Experiment/Group: RA59 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS8.mzML DDA Experiment/Group: RA6 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210070_APCA_POS3.mzML DDA Experiment/Group: RA60 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210155_APCA_POS9.mzML DDA Experiment/Group: RA7 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_N_1.mzML DDA Experiment/Group: RA8 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_N_2.mzML DDA Experiment/Group: RA9 (if "spectral library generation" is enabled, all files will be analyzed together) - F:\PXD031498\20210105_ACPA_N_3.mzML DDA 999 commands to execute: CheckCentroid C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -Xmx39G -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\batmass-io-1.33.4.jar com.dmtavt.fragpipe.util.CheckCentroid F:\PXD031498\20210070_HC1.mzML 15 WorkspaceCleanInit [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\8700ac32-889a-4042-b7a0-42b3c97717bf WorkspaceCleanInit [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\15deaa73-a7f6-4e4b-bafd-843c7b57a10f WorkspaceCleanInit [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c380892e-cdac-4976-a51c-142a194d4c83 WorkspaceCleanInit [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3a541285-3414-4425-ac9a-0e075aeef784 WorkspaceCleanInit [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97994057-4b58-4c06-8d8a-2803125c3d9d WorkspaceCleanInit [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a3bb0b6f-0025-4a53-a221-44e2a88ed777 WorkspaceCleanInit [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\07c869ba-754b-494a-8f8a-61b62dc3b2f2 WorkspaceCleanInit [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3917ecda-4bd0-420b-8fac-3ac8036fdfef WorkspaceCleanInit [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\672a4c9e-f763-42fa-b194-adbe1c3e1439 WorkspaceCleanInit [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3a1da4da-0cbb-4cf9-97e0-27625bd583a3 WorkspaceCleanInit [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e5db7a40-be2f-4114-a2aa-59f893b83b14 WorkspaceCleanInit [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a2826a09-2a02-418c-a23e-777ac1bc4630 WorkspaceCleanInit [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\bb6070ef-2b9c-46a4-80b1-fde2a47ecda7 WorkspaceCleanInit [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\cfd9a09b-c572-40dc-b8ed-df7b98bcea99 WorkspaceCleanInit [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\00862e77-7401-4f8b-8bdd-56aa26c71877 WorkspaceCleanInit [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5173929e-4ba4-4015-95c1-e4bdf33e3b2b WorkspaceCleanInit [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9aef1684-cb99-443b-a5d2-c85dd0825148 WorkspaceCleanInit [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5e86f4d4-350d-474f-9190-393fd70f0d43 WorkspaceCleanInit [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\15368398-0e09-4ddd-8b51-4cfd7e717c21 WorkspaceCleanInit [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\0c02f3f3-bbdb-4bdf-8a16-79593b839179 WorkspaceCleanInit [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a6b25c34-1467-4c8a-97d0-43c7b41b210b WorkspaceCleanInit [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\809b1ae6-b48f-4364-aabf-94f5e52b5ba1 WorkspaceCleanInit [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2c82b779-1a37-47f0-96a3-c520e4373b4a WorkspaceCleanInit [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\926ce20d-9a47-463f-a598-6a93130a6fd3 WorkspaceCleanInit [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6ba5427a-6824-4905-823e-f32c7523aa98 WorkspaceCleanInit [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\23af3b49-9f09-4baf-a187-8096c377a236 WorkspaceCleanInit [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5602c47d-5f18-4483-a35a-a809b24a189a WorkspaceCleanInit [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f3b1b3ba-5d2b-4490-b52c-0d36be25f222 WorkspaceCleanInit [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6e7f3139-9eae-4f03-8ea8-c8f21696f3be WorkspaceCleanInit [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\db6c5082-7614-452c-93dd-dcdb0e9925a3 WorkspaceCleanInit [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e9c510b4-7da4-4d98-8481-1d1432637517 WorkspaceCleanInit [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\12f48ec7-4033-44b4-a9af-9e7924083b30 WorkspaceCleanInit [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\df36cfe8-0b13-4fe9-aa1a-837112b50945 WorkspaceCleanInit [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f79a714c-4570-49da-a0de-2bc741a2cfdb WorkspaceCleanInit [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6f52348b-bf8e-4560-955c-2abdc8f0e85d WorkspaceCleanInit [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\141d05eb-8c90-4e43-8386-18d75ec83aaa WorkspaceCleanInit [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e3355063-6888-4740-acee-0f876ec5c6c4 WorkspaceCleanInit [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2831cc71-15c7-4177-8f5c-89d2f7107f03 WorkspaceCleanInit [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\78618fd4-c120-451c-b984-6b6da156251f WorkspaceCleanInit [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f9995d51-6c9c-47b6-acf0-330b2ed1c1a6 WorkspaceCleanInit [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\0ec43af5-8782-4635-9301-31359ad1ac43 WorkspaceCleanInit [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\cc2fce0f-5c40-41ae-8a77-deecbc07a124 WorkspaceCleanInit [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6ab00e92-39d7-410d-9ec8-4e5d13f72058 WorkspaceCleanInit [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\83fbe5a2-dca6-4d30-a117-e1a5b729074d WorkspaceCleanInit [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\43155ca7-726c-43e6-b5c7-75c30bdbd363 WorkspaceCleanInit [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\4e827eeb-47a8-4b1c-97e4-1edb36a497da WorkspaceCleanInit [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\61aafe0e-8e31-4c58-b416-baa3b336af2d WorkspaceCleanInit [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\aefad09d-cc77-44de-ba51-81514424fd8c WorkspaceCleanInit [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\bff375c9-df60-412a-85f9-7ffcd0b6e77f WorkspaceCleanInit [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\22cf2fb4-5e80-493b-b7a4-be0939c81e31 WorkspaceCleanInit [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\fadc0a9f-4d7c-4da9-9372-cdeb184516b3 WorkspaceCleanInit [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\ec158d15-062c-4eb7-ad9f-0387f76a4d03 WorkspaceCleanInit [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\74ecc113-4329-4063-8a3e-f4ee2c6fb548 WorkspaceCleanInit [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9c84351f-1dec-4d4e-9827-60fbda8cecb0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\58d69813-314d-471f-af9f-cbea8bffb170 WorkspaceCleanInit [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c18d0725-1cc1-423a-8c8e-a6a691bf9527 WorkspaceCleanInit [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e668fed4-aee1-4689-8f53-8e88d6811ec6 WorkspaceCleanInit [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\be04a46c-114e-4d0c-82a2-8a98962a16bd WorkspaceCleanInit [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5eb9bc7c-f01c-42f9-a4a9-904f338ef4c7 WorkspaceCleanInit [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\1053deec-5ca5-44bb-a990-a4865065b0c6 WorkspaceCleanInit [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\57923879-b8c0-4f03-813a-8ae4821c894d WorkspaceCleanInit [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\b10737cc-d9e7-44a2-a9b0-b9fe2d98f44d WorkspaceCleanInit [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97aa14b1-1b1d-4ee2-bd88-3be992f7ca99 WorkspaceCleanInit [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\d16f67e3-20c1-4a16-a53d-112239902bef WorkspaceCleanInit [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6e6e146a-a206-428c-8a7c-36f4cda46001 WorkspaceCleanInit [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\70475bab-1133-4670-bd13-f38d0bd39ebb WorkspaceCleanInit [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\80735f7b-8a1b-4a9b-aa7d-6bca7f38127a WorkspaceCleanInit [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2ea3f34f-f48f-4856-8b98-fa90b5151810 WorkspaceCleanInit [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\75b933f8-5c86-4285-ba3d-e69505832bef WorkspaceCleanInit [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\71fd320d-c141-4c11-9f14-ca97685cb2af WorkspaceCleanInit [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2a177e12-0fd3-4c47-80c8-179b07402701 WorkspaceCleanInit [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\1e583a4f-5d9b-46c6-9e23-9094b7e510ba WorkspaceCleanInit [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97f639f8-f3d4-47a4-8c19-14ab37786f4c WorkspaceCleanInit [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\b9367796-ebd5-465b-8fbf-69b0b7583ed4 WorkspaceCleanInit [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a2092462-b64c-48da-a13d-20d721e8a276 WorkspaceCleanInit [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\706c03d9-6d32-44e6-87b2-f49eb1ef935c WorkspaceCleanInit [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2bd421a8-6492-40ce-bb18-c27638c614c0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\26f459f5-3dba-4800-99df-afffc5fc6081 WorkspaceCleanInit [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\70c93bd0-f202-452e-b278-4f013f9e623c WorkspaceCleanInit [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\04b0910c-a031-45c3-99e2-28cdcd66e3ea WorkspaceCleanInit [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9c53508c-65ec-4ff7-b499-940f6cbe7304 WorkspaceCleanInit [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3878404c-a8f0-4679-b259-3362e11e1844 WorkspaceCleanInit [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c516d199-a30c-4d61-b142-883d4c8bacc8 WorkspaceCleanInit [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a0f10dfc-6aaf-4a1b-b3af-5c70b0b90740 WorkspaceCleanInit [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\46d5b24d-560d-4347-862a-fbf1eb6e8c96 WorkspaceCleanInit [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\d18a7706-c893-48dd-bb42-be283fb0ccf0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e825be42-1e65-477a-bf9c-7490360836c2 WorkspaceCleanInit [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a9f6bf05-eef9-4abb-a3b0-fd145edf7c18 WorkspaceCleanInit [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\8a902dca-d9ba-46f8-9b9c-bc2b50a9f5a3 WorkspaceCleanInit [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\61b21895-1334-4d86-962d-37e277513a10 WorkspaceCleanInit [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\52bab0e6-43b4-4bcb-af25-b24afb43b1f7 MSFragger [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx39G C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSFragger-4.1\MSFragger-4.1.jar F:\testbeijing\fragger.params F:\PXD031498\20210070_HC1.mzML F:\PXD031498\20210105_HC_6.mzML F:\PXD031498\20210105_HC_7.mzML F:\PXD031498\20210105_HC_8_20210401021911.mzML F:\PXD031498\20210105_HC_9.mzML F:\PXD031498\20210155_HC10.mzML F:\PXD031498\20210155_HC11.mzML F:\PXD031498\20210155_HC12.mzML F:\PXD031498\20210155_HC13.mzML F:\PXD031498\20210155_HC14.mzML F:\PXD031498\20210155_HC15.mzML F:\PXD031498\20210070_HC2.mzML F:\PXD031498\20210155_HC16.mzML F:\PXD031498\20210155_HC17.mzML F:\PXD031498\20210155_HC1_20210513132744.mzML F:\PXD031498\20210155_HC2_20210513153447.mzML F:\PXD031498\20210155_HC3_20210513174150.mzML F:\PXD031498\20210155_HC4.mzML F:\PXD031498\20210155_HC5.mzML F:\PXD031498\20210155_HC6.mzML F:\PXD031498\20210155_HC7.mzML F:\PXD031498\20210155_HC8.mzML F:\PXD031498\20210070_HC3.mzML F:\PXD031498\20210155_HC9.mzML F:\PXD031498\20210105_HC_10.mzML F:\PXD031498\20210105_HC_1_20210330145706.mzML F:\PXD031498\20210105_HC_2_20210330170407.mzML F:\PXD031498\20210105_HC_3.mzML F:\PXD031498\20210105_HC_4.mzML F:\PXD031498\20210105_HC_5.mzML F:\PXD031498\20210070_APCA_NEG1.mzML F:\PXD031498\20210105_ACPA_N_4.mzML F:\PXD031498\20210105_ACPA_N_5.mzML F:\PXD031498\20210105_ACPA_P_1.mzML F:\PXD031498\20210105_ACPA_P_10.mzML F:\PXD031498\20210105_ACPA_P_11.mzML F:\PXD031498\20210105_ACPA_P_12.mzML F:\PXD031498\20210105_ACPA_P_13.mzML F:\PXD031498\20210105_ACPA_P_2.mzML F:\PXD031498\20210105_ACPA_P_3.mzML F:\PXD031498\20210105_ACPA_P_4.mzML F:\PXD031498\20210070_APCA_NEG2.mzML F:\PXD031498\20210105_ACPA_P_5.mzML F:\PXD031498\20210105_ACPA_P_6.mzML F:\PXD031498\20210105_ACPA_P_7.mzML F:\PXD031498\20210105_ACPA_P_8.mzML F:\PXD031498\20210105_ACPA_P_9.mzML F:\PXD031498\20210155_APCA_NEG1.mzML F:\PXD031498\20210155_APCA_NEG2.mzML F:\PXD031498\20210155_APCA_NEG3.mzML F:\PXD031498\20210155_APCA_NEG4.mzML F:\PXD031498\20210155_APCA_NEG5.mzML F:\PXD031498\20210070_APCA_NEG3.mzML F:\PXD031498\20210155_APCA_NEG6.mzML F:\PXD031498\20210155_APCA_NEG7.mzML F:\PXD031498\20210155_APCA_POS1.mzML F:\PXD031498\20210155_APCA_POS10.mzML F:\PXD031498\20210155_APCA_POS11.mzML F:\PXD031498\20210155_APCA_POS12.mzML F:\PXD031498\20210155_APCA_POS13.mzML F:\PXD031498\20210155_APCA_POS14.mzML F:\PXD031498\20210155_APCA_POS15.mzML F:\PXD031498\20210155_APCA_POS16.mzML F:\PXD031498\20210070_APCA_POS1.mzML F:\PXD031498\20210155_APCA_POS17.mzML F:\PXD031498\20210155_APCA_POS18.mzML F:\PXD031498\20210155_APCA_POS19.mzML F:\PXD031498\20210155_APCA_POS2.mzML F:\PXD031498\20210155_APCA_POS20.mzML F:\PXD031498\20210155_APCA_POS21.mzML F:\PXD031498\20210155_APCA_POS22.mzML F:\PXD031498\20210155_APCA_POS23.mzML F:\PXD031498\20210155_APCA_POS24.mzML F:\PXD031498\20210155_APCA_POS25.mzML F:\PXD031498\20210070_APCA_POS2.mzML F:\PXD031498\20210155_APCA_POS26.mzML F:\PXD031498\20210155_APCA_POS27.mzML F:\PXD031498\20210155_APCA_POS28.mzML F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML F:\PXD031498\20210155_APCA_POS3.mzML F:\PXD031498\20210155_APCA_POS4.mzML F:\PXD031498\20210155_APCA_POS5.mzML F:\PXD031498\20210155_APCA_POS6.mzML F:\PXD031498\20210155_APCA_POS7.mzML F:\PXD031498\20210155_APCA_POS8.mzML F:\PXD031498\20210070_APCA_POS3.mzML F:\PXD031498\20210155_APCA_POS9.mzML F:\PXD031498\20210105_ACPA_N_1.mzML F:\PXD031498\20210105_ACPA_N_2.mzML F:\PXD031498\20210105_ACPA_N_3.mzML MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC1.pepXML F:\testbeijing\HC1\20210070_HC1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC1.pin F:\testbeijing\HC1\20210070_HC1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_6.pepXML F:\testbeijing\HC10\20210105_HC_6.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_6.pin F:\testbeijing\HC10\20210105_HC_6.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_7.pepXML F:\testbeijing\HC11\20210105_HC_7.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_7.pin F:\testbeijing\HC11\20210105_HC_7.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_8_20210401021911.pepXML F:\testbeijing\HC12\20210105_HC_8_20210401021911.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_8_20210401021911.pin F:\testbeijing\HC12\20210105_HC_8_20210401021911.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_9.pepXML F:\testbeijing\HC13\20210105_HC_9.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_9.pin F:\testbeijing\HC13\20210105_HC_9.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC10.pepXML F:\testbeijing\HC14\20210155_HC10.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC10.pin F:\testbeijing\HC14\20210155_HC10.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC11.pepXML F:\testbeijing\HC15\20210155_HC11.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC11.pin F:\testbeijing\HC15\20210155_HC11.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC12.pepXML F:\testbeijing\HC16\20210155_HC12.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC12.pin F:\testbeijing\HC16\20210155_HC12.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC13.pepXML F:\testbeijing\HC17\20210155_HC13.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC13.pin F:\testbeijing\HC17\20210155_HC13.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC14.pepXML F:\testbeijing\HC18\20210155_HC14.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC14.pin F:\testbeijing\HC18\20210155_HC14.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC15.pepXML F:\testbeijing\HC19\20210155_HC15.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC15.pin F:\testbeijing\HC19\20210155_HC15.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC2.pepXML F:\testbeijing\HC2\20210070_HC2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC2.pin F:\testbeijing\HC2\20210070_HC2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC16.pepXML F:\testbeijing\HC20\20210155_HC16.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC16.pin F:\testbeijing\HC20\20210155_HC16.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC17.pepXML F:\testbeijing\HC21\20210155_HC17.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC17.pin F:\testbeijing\HC21\20210155_HC17.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC1_20210513132744.pepXML F:\testbeijing\HC22\20210155_HC1_20210513132744.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC1_20210513132744.pin F:\testbeijing\HC22\20210155_HC1_20210513132744.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC2_20210513153447.pepXML F:\testbeijing\HC23\20210155_HC2_20210513153447.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC2_20210513153447.pin F:\testbeijing\HC23\20210155_HC2_20210513153447.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC3_20210513174150.pepXML F:\testbeijing\HC24\20210155_HC3_20210513174150.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC3_20210513174150.pin F:\testbeijing\HC24\20210155_HC3_20210513174150.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC4.pepXML F:\testbeijing\HC25\20210155_HC4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC4.pin F:\testbeijing\HC25\20210155_HC4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC5.pepXML F:\testbeijing\HC26\20210155_HC5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC5.pin F:\testbeijing\HC26\20210155_HC5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC6.pepXML F:\testbeijing\HC27\20210155_HC6.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC6.pin F:\testbeijing\HC27\20210155_HC6.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC7.pepXML F:\testbeijing\HC28\20210155_HC7.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC7.pin F:\testbeijing\HC28\20210155_HC7.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC8.pepXML F:\testbeijing\HC29\20210155_HC8.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC8.pin F:\testbeijing\HC29\20210155_HC8.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC3.pepXML F:\testbeijing\HC3\20210070_HC3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC3.pin F:\testbeijing\HC3\20210070_HC3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC9.pepXML F:\testbeijing\HC30\20210155_HC9.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC9.pin F:\testbeijing\HC30\20210155_HC9.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_10.pepXML F:\testbeijing\HC4\20210105_HC_10.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_10.pin F:\testbeijing\HC4\20210105_HC_10.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_1_20210330145706.pepXML F:\testbeijing\HC5\20210105_HC_1_20210330145706.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_1_20210330145706.pin F:\testbeijing\HC5\20210105_HC_1_20210330145706.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_2_20210330170407.pepXML F:\testbeijing\HC6\20210105_HC_2_20210330170407.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_2_20210330170407.pin F:\testbeijing\HC6\20210105_HC_2_20210330170407.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_3.pepXML F:\testbeijing\HC7\20210105_HC_3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_3.pin F:\testbeijing\HC7\20210105_HC_3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_4.pepXML F:\testbeijing\HC8\20210105_HC_4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_4.pin F:\testbeijing\HC8\20210105_HC_4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_5.pepXML F:\testbeijing\HC9\20210105_HC_5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_5.pin F:\testbeijing\HC9\20210105_HC_5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG1.pepXML F:\testbeijing\RA1\20210070_APCA_NEG1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG1.pin F:\testbeijing\RA1\20210070_APCA_NEG1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_4.pepXML F:\testbeijing\RA10\20210105_ACPA_N_4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_4.pin F:\testbeijing\RA10\20210105_ACPA_N_4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_5.pepXML F:\testbeijing\RA11\20210105_ACPA_N_5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_5.pin F:\testbeijing\RA11\20210105_ACPA_N_5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_1.pepXML F:\testbeijing\RA12\20210105_ACPA_P_1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_1.pin F:\testbeijing\RA12\20210105_ACPA_P_1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_10.pepXML F:\testbeijing\RA13\20210105_ACPA_P_10.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_10.pin F:\testbeijing\RA13\20210105_ACPA_P_10.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_11.pepXML F:\testbeijing\RA14\20210105_ACPA_P_11.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_11.pin F:\testbeijing\RA14\20210105_ACPA_P_11.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_12.pepXML F:\testbeijing\RA15\20210105_ACPA_P_12.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_12.pin F:\testbeijing\RA15\20210105_ACPA_P_12.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_13.pepXML F:\testbeijing\RA16\20210105_ACPA_P_13.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_13.pin F:\testbeijing\RA16\20210105_ACPA_P_13.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_2.pepXML F:\testbeijing\RA17\20210105_ACPA_P_2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_2.pin F:\testbeijing\RA17\20210105_ACPA_P_2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_3.pepXML F:\testbeijing\RA18\20210105_ACPA_P_3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_3.pin F:\testbeijing\RA18\20210105_ACPA_P_3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_4.pepXML F:\testbeijing\RA19\20210105_ACPA_P_4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_4.pin F:\testbeijing\RA19\20210105_ACPA_P_4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG2.pepXML F:\testbeijing\RA2\20210070_APCA_NEG2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG2.pin F:\testbeijing\RA2\20210070_APCA_NEG2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_5.pepXML F:\testbeijing\RA20\20210105_ACPA_P_5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_5.pin F:\testbeijing\RA20\20210105_ACPA_P_5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_6.pepXML F:\testbeijing\RA21\20210105_ACPA_P_6.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_6.pin F:\testbeijing\RA21\20210105_ACPA_P_6.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_7.pepXML F:\testbeijing\RA22\20210105_ACPA_P_7.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_7.pin F:\testbeijing\RA22\20210105_ACPA_P_7.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_8.pepXML F:\testbeijing\RA23\20210105_ACPA_P_8.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_8.pin F:\testbeijing\RA23\20210105_ACPA_P_8.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_9.pepXML F:\testbeijing\RA24\20210105_ACPA_P_9.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_9.pin F:\testbeijing\RA24\20210105_ACPA_P_9.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG1.pepXML F:\testbeijing\RA25\20210155_APCA_NEG1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG1.pin F:\testbeijing\RA25\20210155_APCA_NEG1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG2.pepXML F:\testbeijing\RA26\20210155_APCA_NEG2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG2.pin F:\testbeijing\RA26\20210155_APCA_NEG2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG3.pepXML F:\testbeijing\RA27\20210155_APCA_NEG3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG3.pin F:\testbeijing\RA27\20210155_APCA_NEG3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG4.pepXML F:\testbeijing\RA28\20210155_APCA_NEG4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG4.pin F:\testbeijing\RA28\20210155_APCA_NEG4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG5.pepXML F:\testbeijing\RA29\20210155_APCA_NEG5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG5.pin F:\testbeijing\RA29\20210155_APCA_NEG5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG3.pepXML F:\testbeijing\RA3\20210070_APCA_NEG3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG3.pin F:\testbeijing\RA3\20210070_APCA_NEG3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG6.pepXML F:\testbeijing\RA30\20210155_APCA_NEG6.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG6.pin F:\testbeijing\RA30\20210155_APCA_NEG6.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG7.pepXML F:\testbeijing\RA31\20210155_APCA_NEG7.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG7.pin F:\testbeijing\RA31\20210155_APCA_NEG7.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS1.pepXML F:\testbeijing\RA32\20210155_APCA_POS1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS1.pin F:\testbeijing\RA32\20210155_APCA_POS1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS10.pepXML F:\testbeijing\RA33\20210155_APCA_POS10.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS10.pin F:\testbeijing\RA33\20210155_APCA_POS10.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS11.pepXML F:\testbeijing\RA34\20210155_APCA_POS11.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS11.pin F:\testbeijing\RA34\20210155_APCA_POS11.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS12.pepXML F:\testbeijing\RA35\20210155_APCA_POS12.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS12.pin F:\testbeijing\RA35\20210155_APCA_POS12.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS13.pepXML F:\testbeijing\RA36\20210155_APCA_POS13.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS13.pin F:\testbeijing\RA36\20210155_APCA_POS13.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS14.pepXML F:\testbeijing\RA37\20210155_APCA_POS14.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS14.pin F:\testbeijing\RA37\20210155_APCA_POS14.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS15.pepXML F:\testbeijing\RA38\20210155_APCA_POS15.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS15.pin F:\testbeijing\RA38\20210155_APCA_POS15.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS16.pepXML F:\testbeijing\RA39\20210155_APCA_POS16.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS16.pin F:\testbeijing\RA39\20210155_APCA_POS16.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS1.pepXML F:\testbeijing\RA4\20210070_APCA_POS1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS1.pin F:\testbeijing\RA4\20210070_APCA_POS1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS17.pepXML F:\testbeijing\RA40\20210155_APCA_POS17.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS17.pin F:\testbeijing\RA40\20210155_APCA_POS17.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS18.pepXML F:\testbeijing\RA41\20210155_APCA_POS18.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS18.pin F:\testbeijing\RA41\20210155_APCA_POS18.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS19.pepXML F:\testbeijing\RA42\20210155_APCA_POS19.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS19.pin F:\testbeijing\RA42\20210155_APCA_POS19.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS2.pepXML F:\testbeijing\RA43\20210155_APCA_POS2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS2.pin F:\testbeijing\RA43\20210155_APCA_POS2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS20.pepXML F:\testbeijing\RA44\20210155_APCA_POS20.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS20.pin F:\testbeijing\RA44\20210155_APCA_POS20.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS21.pepXML F:\testbeijing\RA45\20210155_APCA_POS21.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS21.pin F:\testbeijing\RA45\20210155_APCA_POS21.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS22.pepXML F:\testbeijing\RA46\20210155_APCA_POS22.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS22.pin F:\testbeijing\RA46\20210155_APCA_POS22.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS23.pepXML F:\testbeijing\RA47\20210155_APCA_POS23.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS23.pin F:\testbeijing\RA47\20210155_APCA_POS23.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS24.pepXML F:\testbeijing\RA48\20210155_APCA_POS24.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS24.pin F:\testbeijing\RA48\20210155_APCA_POS24.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS25.pepXML F:\testbeijing\RA49\20210155_APCA_POS25.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS25.pin F:\testbeijing\RA49\20210155_APCA_POS25.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS2.pepXML F:\testbeijing\RA5\20210070_APCA_POS2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS2.pin F:\testbeijing\RA5\20210070_APCA_POS2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS26.pepXML F:\testbeijing\RA50\20210155_APCA_POS26.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS26.pin F:\testbeijing\RA50\20210155_APCA_POS26.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS27.pepXML F:\testbeijing\RA51\20210155_APCA_POS27.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS27.pin F:\testbeijing\RA51\20210155_APCA_POS27.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS28.pepXML F:\testbeijing\RA52\20210155_APCA_POS28.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS28.pin F:\testbeijing\RA52\20210155_APCA_POS28.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS29_20210519114001.pepXML F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS29_20210519114001.pin F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS3.pepXML F:\testbeijing\RA54\20210155_APCA_POS3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS3.pin F:\testbeijing\RA54\20210155_APCA_POS3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS4.pepXML F:\testbeijing\RA55\20210155_APCA_POS4.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS4.pin F:\testbeijing\RA55\20210155_APCA_POS4.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS5.pepXML F:\testbeijing\RA56\20210155_APCA_POS5.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS5.pin F:\testbeijing\RA56\20210155_APCA_POS5.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS6.pepXML F:\testbeijing\RA57\20210155_APCA_POS6.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS6.pin F:\testbeijing\RA57\20210155_APCA_POS6.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS7.pepXML F:\testbeijing\RA58\20210155_APCA_POS7.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS7.pin F:\testbeijing\RA58\20210155_APCA_POS7.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS8.pepXML F:\testbeijing\RA59\20210155_APCA_POS8.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS8.pin F:\testbeijing\RA59\20210155_APCA_POS8.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS3.pepXML F:\testbeijing\RA6\20210070_APCA_POS3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS3.pin F:\testbeijing\RA6\20210070_APCA_POS3.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS9.pepXML F:\testbeijing\RA60\20210155_APCA_POS9.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS9.pin F:\testbeijing\RA60\20210155_APCA_POS9.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_1.pepXML F:\testbeijing\RA7\20210105_ACPA_N_1.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_1.pin F:\testbeijing\RA7\20210105_ACPA_N_1.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_2.pepXML F:\testbeijing\RA8\20210105_ACPA_N_2.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_2.pin F:\testbeijing\RA8\20210105_ACPA_N_2.pin MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_3.pepXML F:\testbeijing\RA9\20210105_ACPA_N_3.pepXML MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_3.pin F:\testbeijing\RA9\20210105_ACPA_N_3.pin MSBooster [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -Xmx39G -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSBooster-1.2.31.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\batmass-io-1.33.4.jar Features.MainClass --paramsList F:\testbeijing\msbooster_params.txt Percolator [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_9_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_9_edited.pin Percolator [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_9_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_9_edited.pin Percolator [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_3_edited.pin Percolator [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_1_edited.pin Percolator [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS4_edited.pin Percolator [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_5_edited.pin Percolator [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG4_edited.pin Percolator [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC10_percolator_target_psms.tsv --decoy-results-psms 20210155_HC10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC10_edited.pin Percolator [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC16_percolator_target_psms.tsv --decoy-results-psms 20210155_HC16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC16_edited.pin Percolator [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC3_percolator_target_psms.tsv --decoy-results-psms 20210070_HC3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC3_edited.pin Percolator [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_11_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_11_edited.pin Percolator [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS16_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS16_edited.pin Percolator [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS18_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS18_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS18_edited.pin Percolator [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_2_edited.pin Percolator [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC14_percolator_target_psms.tsv --decoy-results-psms 20210155_HC14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC14_edited.pin Percolator [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS23_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS23_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS23_edited.pin Percolator [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS12_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS12_edited.pin Percolator [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_2_20210330170407_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_2_20210330170407_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_2_20210330170407_edited.pin Percolator [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC6_percolator_target_psms.tsv --decoy-results-psms 20210155_HC6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC6_edited.pin Percolator [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS20_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS20_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS20_edited.pin Percolator [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS26_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS26_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS26_edited.pin Percolator [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS15_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS15_edited.pin Percolator [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_6_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_6_edited.pin Percolator [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC17_percolator_target_psms.tsv --decoy-results-psms 20210155_HC17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC17_edited.pin Percolator [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC2_20210513153447_percolator_target_psms.tsv --decoy-results-psms 20210155_HC2_20210513153447_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC2_20210513153447_edited.pin Percolator [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_6_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_6_edited.pin Percolator [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS7_edited.pin Percolator [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS3_edited.pin Percolator [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS2_edited.pin Percolator [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS10_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS10_edited.pin Percolator [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_1_20210330145706_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_1_20210330145706_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_1_20210330145706_edited.pin Percolator [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS21_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS21_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS21_edited.pin Percolator [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC11_percolator_target_psms.tsv --decoy-results-psms 20210155_HC11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC11_edited.pin Percolator [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_4_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_4_edited.pin Percolator [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_4_edited.pin Percolator [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC9_percolator_target_psms.tsv --decoy-results-psms 20210155_HC9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC9_edited.pin Percolator [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_8_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_8_edited.pin Percolator [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS13_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS13_edited.pin Percolator [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS2_edited.pin Percolator [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_5_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_5_edited.pin Percolator [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS6_edited.pin Percolator [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS3_edited.pin Percolator [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC13_percolator_target_psms.tsv --decoy-results-psms 20210155_HC13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC13_edited.pin Percolator [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS1_edited.pin Percolator [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS24_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS24_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS24_edited.pin Percolator [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_5_edited.pin Percolator [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG1_edited.pin Percolator [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS29_20210519114001_edited.pin Percolator [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_3_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_3_edited.pin Percolator [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_10_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_10_edited.pin Percolator [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS1_edited.pin Percolator [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG6_edited.pin Percolator [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC1_percolator_target_psms.tsv --decoy-results-psms 20210070_HC1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC1_edited.pin Percolator [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_13_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_13_edited.pin Percolator [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS17_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS17_edited.pin Percolator [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS28_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS28_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS28_edited.pin Percolator [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC2_percolator_target_psms.tsv --decoy-results-psms 20210070_HC2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC2_edited.pin Percolator [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC7_percolator_target_psms.tsv --decoy-results-psms 20210155_HC7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC7_edited.pin Percolator [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC4_percolator_target_psms.tsv --decoy-results-psms 20210155_HC4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC4_edited.pin Percolator [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS14_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS14_edited.pin Percolator [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC12_percolator_target_psms.tsv --decoy-results-psms 20210155_HC12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC12_edited.pin Percolator [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS25_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS25_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS25_edited.pin Percolator [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_3_edited.pin Percolator [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC15_percolator_target_psms.tsv --decoy-results-psms 20210155_HC15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC15_edited.pin Percolator [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS22_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS22_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS22_edited.pin Percolator [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC1_20210513132744_percolator_target_psms.tsv --decoy-results-psms 20210155_HC1_20210513132744_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC1_20210513132744_edited.pin Percolator [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_7_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_7_edited.pin Percolator [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG5_edited.pin Percolator [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG3_edited.pin Percolator [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG2_edited.pin Percolator [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_1_edited.pin Percolator [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_4_edited.pin Percolator [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS27_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS27_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS27_edited.pin Percolator [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_12_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_12_edited.pin Percolator [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG1_edited.pin Percolator [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG3_edited.pin Percolator [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS8_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS8_edited.pin Percolator [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_2_edited.pin Percolator [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS19_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS19_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS19_edited.pin Percolator [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_10_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_10_edited.pin Percolator [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG2_edited.pin Percolator [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC5_percolator_target_psms.tsv --decoy-results-psms 20210155_HC5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC5_edited.pin Percolator [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG7_edited.pin Percolator [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC8_percolator_target_psms.tsv --decoy-results-psms 20210155_HC8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC8_edited.pin Percolator [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_8_20210401021911_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_8_20210401021911_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_8_20210401021911_edited.pin Percolator [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC3_20210513174150_percolator_target_psms.tsv --decoy-results-psms 20210155_HC3_20210513174150_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC3_20210513174150_edited.pin Percolator [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS9_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS9_edited.pin Percolator [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_7_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_7_edited.pin Percolator [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS5_edited.pin Percolator [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS11_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS11_edited.pin Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_9.pin 20210105_HC_9 20210105_HC_9_percolator_target_psms.tsv 20210105_HC_9_percolator_decoy_psms.tsv interact-20210105_HC_9 DDA 0.5 F:\PXD031498\20210105_HC_9.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC13\20210105_HC_9_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC13\20210105_HC_9_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_9.pin 20210105_ACPA_P_9 20210105_ACPA_P_9_percolator_target_psms.tsv 20210105_ACPA_P_9_percolator_decoy_psms.tsv interact-20210105_ACPA_P_9 DDA 0.5 F:\PXD031498\20210105_ACPA_P_9.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA24\20210105_ACPA_P_9_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA24\20210105_ACPA_P_9_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_3.pin 20210105_ACPA_P_3 20210105_ACPA_P_3_percolator_target_psms.tsv 20210105_ACPA_P_3_percolator_decoy_psms.tsv interact-20210105_ACPA_P_3 DDA 0.5 F:\PXD031498\20210105_ACPA_P_3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA18\20210105_ACPA_P_3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA18\20210105_ACPA_P_3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_1.pin 20210105_ACPA_P_1 20210105_ACPA_P_1_percolator_target_psms.tsv 20210105_ACPA_P_1_percolator_decoy_psms.tsv interact-20210105_ACPA_P_1 DDA 0.5 F:\PXD031498\20210105_ACPA_P_1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA12\20210105_ACPA_P_1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA12\20210105_ACPA_P_1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS4.pin 20210155_APCA_POS4 20210155_APCA_POS4_percolator_target_psms.tsv 20210155_APCA_POS4_percolator_decoy_psms.tsv interact-20210155_APCA_POS4 DDA 0.5 F:\PXD031498\20210155_APCA_POS4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA55\20210155_APCA_POS4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA55\20210155_APCA_POS4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_5.pin 20210105_ACPA_N_5 20210105_ACPA_N_5_percolator_target_psms.tsv 20210105_ACPA_N_5_percolator_decoy_psms.tsv interact-20210105_ACPA_N_5 DDA 0.5 F:\PXD031498\20210105_ACPA_N_5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA11\20210105_ACPA_N_5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA11\20210105_ACPA_N_5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG4.pin 20210155_APCA_NEG4 20210155_APCA_NEG4_percolator_target_psms.tsv 20210155_APCA_NEG4_percolator_decoy_psms.tsv interact-20210155_APCA_NEG4 DDA 0.5 F:\PXD031498\20210155_APCA_NEG4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA28\20210155_APCA_NEG4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA28\20210155_APCA_NEG4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC10.pin 20210155_HC10 20210155_HC10_percolator_target_psms.tsv 20210155_HC10_percolator_decoy_psms.tsv interact-20210155_HC10 DDA 0.5 F:\PXD031498\20210155_HC10.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC14\20210155_HC10_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC14\20210155_HC10_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC16.pin 20210155_HC16 20210155_HC16_percolator_target_psms.tsv 20210155_HC16_percolator_decoy_psms.tsv interact-20210155_HC16 DDA 0.5 F:\PXD031498\20210155_HC16.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC20\20210155_HC16_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC20\20210155_HC16_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC3.pin 20210070_HC3 20210070_HC3_percolator_target_psms.tsv 20210070_HC3_percolator_decoy_psms.tsv interact-20210070_HC3 DDA 0.5 F:\PXD031498\20210070_HC3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC3\20210070_HC3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC3\20210070_HC3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_11.pin 20210105_ACPA_P_11 20210105_ACPA_P_11_percolator_target_psms.tsv 20210105_ACPA_P_11_percolator_decoy_psms.tsv interact-20210105_ACPA_P_11 DDA 0.5 F:\PXD031498\20210105_ACPA_P_11.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA14\20210105_ACPA_P_11_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA14\20210105_ACPA_P_11_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS16.pin 20210155_APCA_POS16 20210155_APCA_POS16_percolator_target_psms.tsv 20210155_APCA_POS16_percolator_decoy_psms.tsv interact-20210155_APCA_POS16 DDA 0.5 F:\PXD031498\20210155_APCA_POS16.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA39\20210155_APCA_POS16_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA39\20210155_APCA_POS16_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS18.pin 20210155_APCA_POS18 20210155_APCA_POS18_percolator_target_psms.tsv 20210155_APCA_POS18_percolator_decoy_psms.tsv interact-20210155_APCA_POS18 DDA 0.5 F:\PXD031498\20210155_APCA_POS18.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA41\20210155_APCA_POS18_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA41\20210155_APCA_POS18_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_2.pin 20210105_ACPA_N_2 20210105_ACPA_N_2_percolator_target_psms.tsv 20210105_ACPA_N_2_percolator_decoy_psms.tsv interact-20210105_ACPA_N_2 DDA 0.5 F:\PXD031498\20210105_ACPA_N_2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA8\20210105_ACPA_N_2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA8\20210105_ACPA_N_2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC14.pin 20210155_HC14 20210155_HC14_percolator_target_psms.tsv 20210155_HC14_percolator_decoy_psms.tsv interact-20210155_HC14 DDA 0.5 F:\PXD031498\20210155_HC14.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC18\20210155_HC14_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC18\20210155_HC14_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS23.pin 20210155_APCA_POS23 20210155_APCA_POS23_percolator_target_psms.tsv 20210155_APCA_POS23_percolator_decoy_psms.tsv interact-20210155_APCA_POS23 DDA 0.5 F:\PXD031498\20210155_APCA_POS23.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA47\20210155_APCA_POS23_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA47\20210155_APCA_POS23_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS12.pin 20210155_APCA_POS12 20210155_APCA_POS12_percolator_target_psms.tsv 20210155_APCA_POS12_percolator_decoy_psms.tsv interact-20210155_APCA_POS12 DDA 0.5 F:\PXD031498\20210155_APCA_POS12.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA35\20210155_APCA_POS12_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA35\20210155_APCA_POS12_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_2_20210330170407.pin 20210105_HC_2_20210330170407 20210105_HC_2_20210330170407_percolator_target_psms.tsv 20210105_HC_2_20210330170407_percolator_decoy_psms.tsv interact-20210105_HC_2_20210330170407 DDA 0.5 F:\PXD031498\20210105_HC_2_20210330170407.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC6\20210105_HC_2_20210330170407_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC6\20210105_HC_2_20210330170407_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC6.pin 20210155_HC6 20210155_HC6_percolator_target_psms.tsv 20210155_HC6_percolator_decoy_psms.tsv interact-20210155_HC6 DDA 0.5 F:\PXD031498\20210155_HC6.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC27\20210155_HC6_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC27\20210155_HC6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS20.pin 20210155_APCA_POS20 20210155_APCA_POS20_percolator_target_psms.tsv 20210155_APCA_POS20_percolator_decoy_psms.tsv interact-20210155_APCA_POS20 DDA 0.5 F:\PXD031498\20210155_APCA_POS20.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA44\20210155_APCA_POS20_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA44\20210155_APCA_POS20_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS26.pin 20210155_APCA_POS26 20210155_APCA_POS26_percolator_target_psms.tsv 20210155_APCA_POS26_percolator_decoy_psms.tsv interact-20210155_APCA_POS26 DDA 0.5 F:\PXD031498\20210155_APCA_POS26.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA50\20210155_APCA_POS26_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA50\20210155_APCA_POS26_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS15.pin 20210155_APCA_POS15 20210155_APCA_POS15_percolator_target_psms.tsv 20210155_APCA_POS15_percolator_decoy_psms.tsv interact-20210155_APCA_POS15 DDA 0.5 F:\PXD031498\20210155_APCA_POS15.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA38\20210155_APCA_POS15_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA38\20210155_APCA_POS15_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_6.pin 20210105_HC_6 20210105_HC_6_percolator_target_psms.tsv 20210105_HC_6_percolator_decoy_psms.tsv interact-20210105_HC_6 DDA 0.5 F:\PXD031498\20210105_HC_6.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC10\20210105_HC_6_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC10\20210105_HC_6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC17.pin 20210155_HC17 20210155_HC17_percolator_target_psms.tsv 20210155_HC17_percolator_decoy_psms.tsv interact-20210155_HC17 DDA 0.5 F:\PXD031498\20210155_HC17.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC21\20210155_HC17_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC21\20210155_HC17_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC2_20210513153447.pin 20210155_HC2_20210513153447 20210155_HC2_20210513153447_percolator_target_psms.tsv 20210155_HC2_20210513153447_percolator_decoy_psms.tsv interact-20210155_HC2_20210513153447 DDA 0.5 F:\PXD031498\20210155_HC2_20210513153447.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC23\20210155_HC2_20210513153447_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC23\20210155_HC2_20210513153447_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_6.pin 20210105_ACPA_P_6 20210105_ACPA_P_6_percolator_target_psms.tsv 20210105_ACPA_P_6_percolator_decoy_psms.tsv interact-20210105_ACPA_P_6 DDA 0.5 F:\PXD031498\20210105_ACPA_P_6.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA21\20210105_ACPA_P_6_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA21\20210105_ACPA_P_6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS7.pin 20210155_APCA_POS7 20210155_APCA_POS7_percolator_target_psms.tsv 20210155_APCA_POS7_percolator_decoy_psms.tsv interact-20210155_APCA_POS7 DDA 0.5 F:\PXD031498\20210155_APCA_POS7.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA58\20210155_APCA_POS7_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA58\20210155_APCA_POS7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS3.pin 20210070_APCA_POS3 20210070_APCA_POS3_percolator_target_psms.tsv 20210070_APCA_POS3_percolator_decoy_psms.tsv interact-20210070_APCA_POS3 DDA 0.5 F:\PXD031498\20210070_APCA_POS3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA6\20210070_APCA_POS3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA6\20210070_APCA_POS3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS2.pin 20210155_APCA_POS2 20210155_APCA_POS2_percolator_target_psms.tsv 20210155_APCA_POS2_percolator_decoy_psms.tsv interact-20210155_APCA_POS2 DDA 0.5 F:\PXD031498\20210155_APCA_POS2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA43\20210155_APCA_POS2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA43\20210155_APCA_POS2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS10.pin 20210155_APCA_POS10 20210155_APCA_POS10_percolator_target_psms.tsv 20210155_APCA_POS10_percolator_decoy_psms.tsv interact-20210155_APCA_POS10 DDA 0.5 F:\PXD031498\20210155_APCA_POS10.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA33\20210155_APCA_POS10_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA33\20210155_APCA_POS10_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_1_20210330145706.pin 20210105_HC_1_20210330145706 20210105_HC_1_20210330145706_percolator_target_psms.tsv 20210105_HC_1_20210330145706_percolator_decoy_psms.tsv interact-20210105_HC_1_20210330145706 DDA 0.5 F:\PXD031498\20210105_HC_1_20210330145706.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC5\20210105_HC_1_20210330145706_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC5\20210105_HC_1_20210330145706_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS21.pin 20210155_APCA_POS21 20210155_APCA_POS21_percolator_target_psms.tsv 20210155_APCA_POS21_percolator_decoy_psms.tsv interact-20210155_APCA_POS21 DDA 0.5 F:\PXD031498\20210155_APCA_POS21.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA45\20210155_APCA_POS21_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA45\20210155_APCA_POS21_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC11.pin 20210155_HC11 20210155_HC11_percolator_target_psms.tsv 20210155_HC11_percolator_decoy_psms.tsv interact-20210155_HC11 DDA 0.5 F:\PXD031498\20210155_HC11.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC15\20210155_HC11_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC15\20210155_HC11_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_4.pin 20210105_HC_4 20210105_HC_4_percolator_target_psms.tsv 20210105_HC_4_percolator_decoy_psms.tsv interact-20210105_HC_4 DDA 0.5 F:\PXD031498\20210105_HC_4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC8\20210105_HC_4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC8\20210105_HC_4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_4.pin 20210105_ACPA_P_4 20210105_ACPA_P_4_percolator_target_psms.tsv 20210105_ACPA_P_4_percolator_decoy_psms.tsv interact-20210105_ACPA_P_4 DDA 0.5 F:\PXD031498\20210105_ACPA_P_4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA19\20210105_ACPA_P_4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA19\20210105_ACPA_P_4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC9.pin 20210155_HC9 20210155_HC9_percolator_target_psms.tsv 20210155_HC9_percolator_decoy_psms.tsv interact-20210155_HC9 DDA 0.5 F:\PXD031498\20210155_HC9.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC30\20210155_HC9_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC30\20210155_HC9_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_8.pin 20210105_ACPA_P_8 20210105_ACPA_P_8_percolator_target_psms.tsv 20210105_ACPA_P_8_percolator_decoy_psms.tsv interact-20210105_ACPA_P_8 DDA 0.5 F:\PXD031498\20210105_ACPA_P_8.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA23\20210105_ACPA_P_8_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA23\20210105_ACPA_P_8_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS13.pin 20210155_APCA_POS13 20210155_APCA_POS13_percolator_target_psms.tsv 20210155_APCA_POS13_percolator_decoy_psms.tsv interact-20210155_APCA_POS13 DDA 0.5 F:\PXD031498\20210155_APCA_POS13.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA36\20210155_APCA_POS13_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA36\20210155_APCA_POS13_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS2.pin 20210070_APCA_POS2 20210070_APCA_POS2_percolator_target_psms.tsv 20210070_APCA_POS2_percolator_decoy_psms.tsv interact-20210070_APCA_POS2 DDA 0.5 F:\PXD031498\20210070_APCA_POS2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA5\20210070_APCA_POS2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA5\20210070_APCA_POS2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_5.pin 20210105_HC_5 20210105_HC_5_percolator_target_psms.tsv 20210105_HC_5_percolator_decoy_psms.tsv interact-20210105_HC_5 DDA 0.5 F:\PXD031498\20210105_HC_5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC9\20210105_HC_5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC9\20210105_HC_5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS6.pin 20210155_APCA_POS6 20210155_APCA_POS6_percolator_target_psms.tsv 20210155_APCA_POS6_percolator_decoy_psms.tsv interact-20210155_APCA_POS6 DDA 0.5 F:\PXD031498\20210155_APCA_POS6.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA57\20210155_APCA_POS6_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA57\20210155_APCA_POS6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS3.pin 20210155_APCA_POS3 20210155_APCA_POS3_percolator_target_psms.tsv 20210155_APCA_POS3_percolator_decoy_psms.tsv interact-20210155_APCA_POS3 DDA 0.5 F:\PXD031498\20210155_APCA_POS3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA54\20210155_APCA_POS3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA54\20210155_APCA_POS3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC13.pin 20210155_HC13 20210155_HC13_percolator_target_psms.tsv 20210155_HC13_percolator_decoy_psms.tsv interact-20210155_HC13 DDA 0.5 F:\PXD031498\20210155_HC13.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC17\20210155_HC13_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC17\20210155_HC13_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS1.pin 20210155_APCA_POS1 20210155_APCA_POS1_percolator_target_psms.tsv 20210155_APCA_POS1_percolator_decoy_psms.tsv interact-20210155_APCA_POS1 DDA 0.5 F:\PXD031498\20210155_APCA_POS1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA32\20210155_APCA_POS1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA32\20210155_APCA_POS1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS24.pin 20210155_APCA_POS24 20210155_APCA_POS24_percolator_target_psms.tsv 20210155_APCA_POS24_percolator_decoy_psms.tsv interact-20210155_APCA_POS24 DDA 0.5 F:\PXD031498\20210155_APCA_POS24.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA48\20210155_APCA_POS24_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA48\20210155_APCA_POS24_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_5.pin 20210105_ACPA_P_5 20210105_ACPA_P_5_percolator_target_psms.tsv 20210105_ACPA_P_5_percolator_decoy_psms.tsv interact-20210105_ACPA_P_5 DDA 0.5 F:\PXD031498\20210105_ACPA_P_5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA20\20210105_ACPA_P_5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA20\20210105_ACPA_P_5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG1.pin 20210155_APCA_NEG1 20210155_APCA_NEG1_percolator_target_psms.tsv 20210155_APCA_NEG1_percolator_decoy_psms.tsv interact-20210155_APCA_NEG1 DDA 0.5 F:\PXD031498\20210155_APCA_NEG1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA25\20210155_APCA_NEG1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA25\20210155_APCA_NEG1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS29_20210519114001.pin 20210155_APCA_POS29_20210519114001 20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv 20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv interact-20210155_APCA_POS29_20210519114001 DDA 0.5 F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_3.pin 20210105_HC_3 20210105_HC_3_percolator_target_psms.tsv 20210105_HC_3_percolator_decoy_psms.tsv interact-20210105_HC_3 DDA 0.5 F:\PXD031498\20210105_HC_3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC7\20210105_HC_3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC7\20210105_HC_3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_10.pin 20210105_ACPA_P_10 20210105_ACPA_P_10_percolator_target_psms.tsv 20210105_ACPA_P_10_percolator_decoy_psms.tsv interact-20210105_ACPA_P_10 DDA 0.5 F:\PXD031498\20210105_ACPA_P_10.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA13\20210105_ACPA_P_10_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA13\20210105_ACPA_P_10_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS1.pin 20210070_APCA_POS1 20210070_APCA_POS1_percolator_target_psms.tsv 20210070_APCA_POS1_percolator_decoy_psms.tsv interact-20210070_APCA_POS1 DDA 0.5 F:\PXD031498\20210070_APCA_POS1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA4\20210070_APCA_POS1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA4\20210070_APCA_POS1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG6.pin 20210155_APCA_NEG6 20210155_APCA_NEG6_percolator_target_psms.tsv 20210155_APCA_NEG6_percolator_decoy_psms.tsv interact-20210155_APCA_NEG6 DDA 0.5 F:\PXD031498\20210155_APCA_NEG6.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA30\20210155_APCA_NEG6_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA30\20210155_APCA_NEG6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC1.pin 20210070_HC1 20210070_HC1_percolator_target_psms.tsv 20210070_HC1_percolator_decoy_psms.tsv interact-20210070_HC1 DDA 0.5 F:\PXD031498\20210070_HC1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC1\20210070_HC1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC1\20210070_HC1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_13.pin 20210105_ACPA_P_13 20210105_ACPA_P_13_percolator_target_psms.tsv 20210105_ACPA_P_13_percolator_decoy_psms.tsv interact-20210105_ACPA_P_13 DDA 0.5 F:\PXD031498\20210105_ACPA_P_13.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA16\20210105_ACPA_P_13_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA16\20210105_ACPA_P_13_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS17.pin 20210155_APCA_POS17 20210155_APCA_POS17_percolator_target_psms.tsv 20210155_APCA_POS17_percolator_decoy_psms.tsv interact-20210155_APCA_POS17 DDA 0.5 F:\PXD031498\20210155_APCA_POS17.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA40\20210155_APCA_POS17_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA40\20210155_APCA_POS17_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS28.pin 20210155_APCA_POS28 20210155_APCA_POS28_percolator_target_psms.tsv 20210155_APCA_POS28_percolator_decoy_psms.tsv interact-20210155_APCA_POS28 DDA 0.5 F:\PXD031498\20210155_APCA_POS28.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA52\20210155_APCA_POS28_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA52\20210155_APCA_POS28_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC2.pin 20210070_HC2 20210070_HC2_percolator_target_psms.tsv 20210070_HC2_percolator_decoy_psms.tsv interact-20210070_HC2 DDA 0.5 F:\PXD031498\20210070_HC2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC2\20210070_HC2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC2\20210070_HC2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC7.pin 20210155_HC7 20210155_HC7_percolator_target_psms.tsv 20210155_HC7_percolator_decoy_psms.tsv interact-20210155_HC7 DDA 0.5 F:\PXD031498\20210155_HC7.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC28\20210155_HC7_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC28\20210155_HC7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC4.pin 20210155_HC4 20210155_HC4_percolator_target_psms.tsv 20210155_HC4_percolator_decoy_psms.tsv interact-20210155_HC4 DDA 0.5 F:\PXD031498\20210155_HC4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC25\20210155_HC4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC25\20210155_HC4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS14.pin 20210155_APCA_POS14 20210155_APCA_POS14_percolator_target_psms.tsv 20210155_APCA_POS14_percolator_decoy_psms.tsv interact-20210155_APCA_POS14 DDA 0.5 F:\PXD031498\20210155_APCA_POS14.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA37\20210155_APCA_POS14_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA37\20210155_APCA_POS14_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC12.pin 20210155_HC12 20210155_HC12_percolator_target_psms.tsv 20210155_HC12_percolator_decoy_psms.tsv interact-20210155_HC12 DDA 0.5 F:\PXD031498\20210155_HC12.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC16\20210155_HC12_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC16\20210155_HC12_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS25.pin 20210155_APCA_POS25 20210155_APCA_POS25_percolator_target_psms.tsv 20210155_APCA_POS25_percolator_decoy_psms.tsv interact-20210155_APCA_POS25 DDA 0.5 F:\PXD031498\20210155_APCA_POS25.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA49\20210155_APCA_POS25_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA49\20210155_APCA_POS25_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_3.pin 20210105_ACPA_N_3 20210105_ACPA_N_3_percolator_target_psms.tsv 20210105_ACPA_N_3_percolator_decoy_psms.tsv interact-20210105_ACPA_N_3 DDA 0.5 F:\PXD031498\20210105_ACPA_N_3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA9\20210105_ACPA_N_3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA9\20210105_ACPA_N_3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC15.pin 20210155_HC15 20210155_HC15_percolator_target_psms.tsv 20210155_HC15_percolator_decoy_psms.tsv interact-20210155_HC15 DDA 0.5 F:\PXD031498\20210155_HC15.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC19\20210155_HC15_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC19\20210155_HC15_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS22.pin 20210155_APCA_POS22 20210155_APCA_POS22_percolator_target_psms.tsv 20210155_APCA_POS22_percolator_decoy_psms.tsv interact-20210155_APCA_POS22 DDA 0.5 F:\PXD031498\20210155_APCA_POS22.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA46\20210155_APCA_POS22_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA46\20210155_APCA_POS22_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC1_20210513132744.pin 20210155_HC1_20210513132744 20210155_HC1_20210513132744_percolator_target_psms.tsv 20210155_HC1_20210513132744_percolator_decoy_psms.tsv interact-20210155_HC1_20210513132744 DDA 0.5 F:\PXD031498\20210155_HC1_20210513132744.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC22\20210155_HC1_20210513132744_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC22\20210155_HC1_20210513132744_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_7.pin 20210105_HC_7 20210105_HC_7_percolator_target_psms.tsv 20210105_HC_7_percolator_decoy_psms.tsv interact-20210105_HC_7 DDA 0.5 F:\PXD031498\20210105_HC_7.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC11\20210105_HC_7_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC11\20210105_HC_7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG5.pin 20210155_APCA_NEG5 20210155_APCA_NEG5_percolator_target_psms.tsv 20210155_APCA_NEG5_percolator_decoy_psms.tsv interact-20210155_APCA_NEG5 DDA 0.5 F:\PXD031498\20210155_APCA_NEG5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA29\20210155_APCA_NEG5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA29\20210155_APCA_NEG5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG3.pin 20210070_APCA_NEG3 20210070_APCA_NEG3_percolator_target_psms.tsv 20210070_APCA_NEG3_percolator_decoy_psms.tsv interact-20210070_APCA_NEG3 DDA 0.5 F:\PXD031498\20210070_APCA_NEG3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA3\20210070_APCA_NEG3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA3\20210070_APCA_NEG3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG2.pin 20210155_APCA_NEG2 20210155_APCA_NEG2_percolator_target_psms.tsv 20210155_APCA_NEG2_percolator_decoy_psms.tsv interact-20210155_APCA_NEG2 DDA 0.5 F:\PXD031498\20210155_APCA_NEG2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA26\20210155_APCA_NEG2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA26\20210155_APCA_NEG2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_1.pin 20210105_ACPA_N_1 20210105_ACPA_N_1_percolator_target_psms.tsv 20210105_ACPA_N_1_percolator_decoy_psms.tsv interact-20210105_ACPA_N_1 DDA 0.5 F:\PXD031498\20210105_ACPA_N_1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA7\20210105_ACPA_N_1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA7\20210105_ACPA_N_1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_4.pin 20210105_ACPA_N_4 20210105_ACPA_N_4_percolator_target_psms.tsv 20210105_ACPA_N_4_percolator_decoy_psms.tsv interact-20210105_ACPA_N_4 DDA 0.5 F:\PXD031498\20210105_ACPA_N_4.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA10\20210105_ACPA_N_4_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA10\20210105_ACPA_N_4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS27.pin 20210155_APCA_POS27 20210155_APCA_POS27_percolator_target_psms.tsv 20210155_APCA_POS27_percolator_decoy_psms.tsv interact-20210155_APCA_POS27 DDA 0.5 F:\PXD031498\20210155_APCA_POS27.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA51\20210155_APCA_POS27_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA51\20210155_APCA_POS27_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_12.pin 20210105_ACPA_P_12 20210105_ACPA_P_12_percolator_target_psms.tsv 20210105_ACPA_P_12_percolator_decoy_psms.tsv interact-20210105_ACPA_P_12 DDA 0.5 F:\PXD031498\20210105_ACPA_P_12.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA15\20210105_ACPA_P_12_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA15\20210105_ACPA_P_12_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG1.pin 20210070_APCA_NEG1 20210070_APCA_NEG1_percolator_target_psms.tsv 20210070_APCA_NEG1_percolator_decoy_psms.tsv interact-20210070_APCA_NEG1 DDA 0.5 F:\PXD031498\20210070_APCA_NEG1.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA1\20210070_APCA_NEG1_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA1\20210070_APCA_NEG1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG3.pin 20210155_APCA_NEG3 20210155_APCA_NEG3_percolator_target_psms.tsv 20210155_APCA_NEG3_percolator_decoy_psms.tsv interact-20210155_APCA_NEG3 DDA 0.5 F:\PXD031498\20210155_APCA_NEG3.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA27\20210155_APCA_NEG3_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA27\20210155_APCA_NEG3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS8.pin 20210155_APCA_POS8 20210155_APCA_POS8_percolator_target_psms.tsv 20210155_APCA_POS8_percolator_decoy_psms.tsv interact-20210155_APCA_POS8 DDA 0.5 F:\PXD031498\20210155_APCA_POS8.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA59\20210155_APCA_POS8_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA59\20210155_APCA_POS8_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_2.pin 20210105_ACPA_P_2 20210105_ACPA_P_2_percolator_target_psms.tsv 20210105_ACPA_P_2_percolator_decoy_psms.tsv interact-20210105_ACPA_P_2 DDA 0.5 F:\PXD031498\20210105_ACPA_P_2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA17\20210105_ACPA_P_2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA17\20210105_ACPA_P_2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS19.pin 20210155_APCA_POS19 20210155_APCA_POS19_percolator_target_psms.tsv 20210155_APCA_POS19_percolator_decoy_psms.tsv interact-20210155_APCA_POS19 DDA 0.5 F:\PXD031498\20210155_APCA_POS19.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA42\20210155_APCA_POS19_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA42\20210155_APCA_POS19_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_10.pin 20210105_HC_10 20210105_HC_10_percolator_target_psms.tsv 20210105_HC_10_percolator_decoy_psms.tsv interact-20210105_HC_10 DDA 0.5 F:\PXD031498\20210105_HC_10.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC4\20210105_HC_10_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC4\20210105_HC_10_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG2.pin 20210070_APCA_NEG2 20210070_APCA_NEG2_percolator_target_psms.tsv 20210070_APCA_NEG2_percolator_decoy_psms.tsv interact-20210070_APCA_NEG2 DDA 0.5 F:\PXD031498\20210070_APCA_NEG2.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA2\20210070_APCA_NEG2_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA2\20210070_APCA_NEG2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC5.pin 20210155_HC5 20210155_HC5_percolator_target_psms.tsv 20210155_HC5_percolator_decoy_psms.tsv interact-20210155_HC5 DDA 0.5 F:\PXD031498\20210155_HC5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC26\20210155_HC5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC26\20210155_HC5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG7.pin 20210155_APCA_NEG7 20210155_APCA_NEG7_percolator_target_psms.tsv 20210155_APCA_NEG7_percolator_decoy_psms.tsv interact-20210155_APCA_NEG7 DDA 0.5 F:\PXD031498\20210155_APCA_NEG7.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA31\20210155_APCA_NEG7_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA31\20210155_APCA_NEG7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC8.pin 20210155_HC8 20210155_HC8_percolator_target_psms.tsv 20210155_HC8_percolator_decoy_psms.tsv interact-20210155_HC8 DDA 0.5 F:\PXD031498\20210155_HC8.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC29\20210155_HC8_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC29\20210155_HC8_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_8_20210401021911.pin 20210105_HC_8_20210401021911 20210105_HC_8_20210401021911_percolator_target_psms.tsv 20210105_HC_8_20210401021911_percolator_decoy_psms.tsv interact-20210105_HC_8_20210401021911 DDA 0.5 F:\PXD031498\20210105_HC_8_20210401021911.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC12\20210105_HC_8_20210401021911_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC12\20210105_HC_8_20210401021911_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC3_20210513174150.pin 20210155_HC3_20210513174150 20210155_HC3_20210513174150_percolator_target_psms.tsv 20210155_HC3_20210513174150_percolator_decoy_psms.tsv interact-20210155_HC3_20210513174150 DDA 0.5 F:\PXD031498\20210155_HC3_20210513174150.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC24\20210155_HC3_20210513174150_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC24\20210155_HC3_20210513174150_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS9.pin 20210155_APCA_POS9 20210155_APCA_POS9_percolator_target_psms.tsv 20210155_APCA_POS9_percolator_decoy_psms.tsv interact-20210155_APCA_POS9 DDA 0.5 F:\PXD031498\20210155_APCA_POS9.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA60\20210155_APCA_POS9_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA60\20210155_APCA_POS9_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_7.pin 20210105_ACPA_P_7 20210105_ACPA_P_7_percolator_target_psms.tsv 20210105_ACPA_P_7_percolator_decoy_psms.tsv interact-20210105_ACPA_P_7 DDA 0.5 F:\PXD031498\20210105_ACPA_P_7.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA22\20210105_ACPA_P_7_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA22\20210105_ACPA_P_7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS5.pin 20210155_APCA_POS5 20210155_APCA_POS5_percolator_target_psms.tsv 20210155_APCA_POS5_percolator_decoy_psms.tsv interact-20210155_APCA_POS5 DDA 0.5 F:\PXD031498\20210155_APCA_POS5.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA56\20210155_APCA_POS5_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA56\20210155_APCA_POS5_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS11.pin 20210155_APCA_POS11 20210155_APCA_POS11_percolator_target_psms.tsv 20210155_APCA_POS11_percolator_decoy_psms.tsv interact-20210155_APCA_POS11 DDA 0.5 F:\PXD031498\20210155_APCA_POS11.mzML Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA34\20210155_APCA_POS11_percolator_target_psms.tsv Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA34\20210155_APCA_POS11_percolator_decoy_psms.tsv ProteinProphet [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe proteinprophet --maxppmdiff 2000000 --output combined F:\testbeijing\filelist_proteinprophet.txt PhilosopherDbAnnotate [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe database --annotate F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta --prefix rev_ PhilosopherFilter [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --razor PhilosopherFilter [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC10 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC11 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC12 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC13 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC14 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC15 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC16 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC17 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC18 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC19 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC2 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC20 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC21 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC22 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC23 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC24 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC25 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC26 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC27 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC28 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC29 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC3 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC30 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC4 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC5 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC6 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC7 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC8 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC9 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA1 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA10 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA11 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA12 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA13 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA14 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA15 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA16 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA17 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA18 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA19 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA2 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA20 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA21 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA22 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA23 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA24 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA25 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA26 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA27 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA28 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA29 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA3 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA30 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA31 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA32 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA33 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA34 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA35 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA36 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA37 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA38 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA39 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA4 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA40 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA41 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA42 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA43 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA44 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA45 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA46 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA47 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA48 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA49 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA5 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA50 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA51 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA52 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA53 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA54 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA55 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA56 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA57 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA58 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA59 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA6 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA60 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA7 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA8 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherFilter [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\RA9 --dbbin F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --probin F:\testbeijing\HC1 --razor PhilosopherReport [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report PhilosopherReport [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report WorkspaceClean [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceClean [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck IonQuant [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -Xmx39G -Dlibs.bruker.dir=C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSFragger-4.1\ext\bruker -Dlibs.thermo.dir=C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSFragger-4.1\ext\thermo -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\jfreechart-1.5.3.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\IonQuant-1.10.27.jar ionquant.IonQuant --threads 15 --perform-ms1quant 1 --perform-isoquant 0 --isotol 20.0 --isolevel 2 --isotype tmt10 --ionmobility 0 --site-reports 1 --msstats 1 --minexps 1 --mbr 1 --maxlfq 1 --requantify 1 --mztol 10 --imtol 0.05 --rttol 0.4 --mbrmincorr 0 --mbrrttol 1 --mbrimtol 0.05 --mbrtoprun 10 --ionfdr 0.01 --proteinfdr 1 --peptidefdr 1 --normalization 1 --minisotopes 2 --minscans 3 --writeindex 0 --tp 0 --minfreq 0 --minions 1 --locprob 0.75 --uniqueness 0 --multidir . --filelist F:\testbeijing\filelist_ionquant.txt --modlist F:\testbeijing\modmasses_ionquant.txt ~~~~~~~~~~~~~~~~~~~~~~ Execution order: Cmd: [START], Work dir: [F:\testbeijing] Cmd: [CheckCentroid], Work dir: [F:\testbeijing] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA26] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA25] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA24] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA23] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA29] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA28] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA27] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA60] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA22] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA21] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA20] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA1] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA2] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA3] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA4] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC30] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA5] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA6] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA15] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA59] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA14] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA58] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA13] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA57] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA12] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA56] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA19] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA18] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA17] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA16] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA51] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA7] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA50] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA8] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA9] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA11] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA55] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA10] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA54] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA53] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA52] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC25] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC26] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC23] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC24] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC21] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC22] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC20] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC29] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC27] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC28] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA48] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA47] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA46] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA45] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA49] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC2] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA40] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC1] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA44] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA43] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA42] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA41] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC14] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC15] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC9] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC12] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC8] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC13] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC7] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC10] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC6] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC11] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC5] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC4] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC3] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC18] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC19] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC16] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\HC17] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA37] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA36] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA35] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA34] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA39] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA38] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA33] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA32] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA31] Cmd: [WorkspaceCleanInit], Work dir: [F:\testbeijing\RA30] Cmd: [MSFragger], Work dir: [F:\testbeijing] Cmd: [MSBooster], Work dir: [F:\testbeijing] Cmd: [Percolator], Work dir: [F:\testbeijing] Cmd: [ProteinProphet], Work dir: [F:\testbeijing] Cmd: [PhilosopherDbAnnotate], Work dir: [F:\testbeijing] Cmd: [PhilosopherFilter], Work dir: [F:\testbeijing] Cmd: [PhilosopherReport], Work dir: [F:\testbeijing] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA26] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA25] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA24] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA23] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA29] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA28] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA27] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA60] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA22] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA21] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA20] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA1] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA2] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA3] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA4] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC30] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA5] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA6] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA15] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA59] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA14] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA58] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA13] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA57] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA12] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA56] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA19] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA18] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA17] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA16] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA51] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA7] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA50] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA8] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA9] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA11] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA55] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA10] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA54] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA53] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA52] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC25] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC26] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC23] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC24] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC21] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC22] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC20] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC29] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC27] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC28] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA48] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA47] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA46] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA45] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA49] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC2] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA40] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC1] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA44] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA43] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA42] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA41] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC14] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC15] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC9] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC12] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC8] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC13] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC7] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC10] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC6] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC11] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC5] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC4] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC3] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC18] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC19] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC16] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\HC17] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA37] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA36] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA35] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA34] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA39] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA38] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA33] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA32] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA31] Cmd: [WorkspaceClean], Work dir: [F:\testbeijing\RA30] Cmd: [IonQuant], Work dir: [F:\testbeijing] ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~Sample of F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta~~~~~~~ >contam_sp|O77727|K1C15_SHEEP >sp|ORF11_HSALNT0058671:599:718|HSALNT0058671ORF11 >sp|ORF12_NONHSAT228611.1:41:121|NONHSAT228611.1ORF12 >sp|ORF14_NONHSAT196768.1:1598:1687|NONHSAT196768.1ORF14 >sp|ORF17_HSALNT0077485:1942:2040|HSALNT0077485ORF17 >sp|ORF1_HSALNT0013077:196:318|HSALNT0013077ORF1 >sp|ORF1_HSALNT0288484:42:188|HSALNT0288484ORF1 >sp|ORF22_HSALNT0150030:1550:1660|HSALNT0150030ORF22 >sp|ORF26_NONHSAG014992.3:2405:2608|NONHSAG014992.3ORF26 >sp|ORF2_HSALNT0108389:461:742|HSALNT0108389ORF2 >sp|ORF30_HSALNT0209959:851:1003|HSALNT0209959ORF30 >sp|ORF37_NONHSAG062183.1:3029:3184|NONHSAG062183.1ORF37 >sp|ORF3_HSALNT0237164:702:878|HSALNT0237164ORF3 >sp|ORF461_NONHSAG077122.2:52916:53050|NONHSAG077122.2ORF461 >sp|ORF4_HSALNT0253640:76:312|HSALNT0253640ORF4 >sp|ORF5_HSALNT0026373:760:864|HSALNT0026373ORF5 >sp|ORF62_HSALNT0257761:16338:16430|HSALNT0257761ORF62 >sp|ORF6_NONHSAG096767.1:1266:2108|NONHSAG096767.1ORF6 >sp|ORF7_NONHSAG004956.2:1081:1182|NONHSAG004956.2ORF7 >sp|ORF8_NONHSAG098930.1:5148:5222|NONHSAG098930.1ORF8 >sp|Q9Y6Z7|COL10_HUMAN ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ fragpipe.config ~~~~~~~~~ # FragPipe v22.0ui state cache # Please edit the following path to point to the correct location. # In Windows, please replace single '\' with '\\' database.db-path=F\:\\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta crystalc.run-crystalc=false database.decoy-tag=rev_ diann.fragpipe.cmd-opts= diann.generate-msstats=true diann.heavy= diann.library= diann.light= diann.medium= diann.q-value=0.01 diann.quantification-strategy=3 diann.quantification-strategy-2=QuantUMS (high accuracy) diann.run-dia-nn=false diann.run-dia-plex=false diann.run-specific-protein-q-value=false diann.unrelated-runs=false diann.use-predicted-spectra=false diatracer.corr-threshold=0.3 diatracer.delta-apex-im=0.01 diatracer.delta-apex-rt=3 diatracer.mass-defect-filter=true diatracer.mass-defect-offset=0.1 diatracer.rf-max=500 diatracer.run-diatracer=false diatracer.write-intermediate-files=false diaumpire.AdjustFragIntensity=true diaumpire.BoostComplementaryIon=false diaumpire.CorrThreshold=0 diaumpire.DeltaApex=0.2 diaumpire.ExportPrecursorPeak=false diaumpire.Q1=true diaumpire.Q2=true diaumpire.Q3=true diaumpire.RFmax=500 diaumpire.RPmax=25 diaumpire.RTOverlap=0.3 diaumpire.SE.EstimateBG=false diaumpire.SE.IsoPattern=0.3 diaumpire.SE.MS1PPM=10 diaumpire.SE.MS2PPM=20 diaumpire.SE.MS2SN=1.1 diaumpire.SE.MassDefectFilter=true diaumpire.SE.MassDefectOffset=0.1 diaumpire.SE.NoMissedScan=1 diaumpire.SE.SN=1.1 diaumpire.run-diaumpire=false fpop.fpop-tmt=false fpop.label_control= fpop.label_fpop= fpop.region_size=1 fpop.run-fpop=false fpop.subtract-control=false fragpipe-config.bin-diann=C\:\\Users\\User\\AppData\\Local\\Temp\\Rar$EXa13424.45482\\fragpipe\\tools\\diann\\1.8.2_beta_8\\win\\DiaNN.exe fragpipe-config.bin-python=C\:\\Users\\User\\AppData\\Local\\Programs\\Python\\Python39\\python fragpipe-config.tools-folder=C\:\\Users\\User\\AppData\\Local\\Temp\\Rar$EXa13424.45482\\fragpipe\\lib\\..\\tools freequant.mz-tol=10 freequant.rt-tol=0.4 freequant.run-freequant=false ionquant.excludemods= ionquant.heavy= ionquant.imtol=0.05 ionquant.ionfdr=0.01 ionquant.light= ionquant.locprob=0.75 ionquant.maxlfq=1 ionquant.mbr=1 ionquant.mbrimtol=0.05 ionquant.mbrmincorr=0 ionquant.mbrrttol=1 ionquant.mbrtoprun=10 ionquant.medium= ionquant.minfreq=0 ionquant.minions=1 ionquant.minisotopes=2 ionquant.minscans=3 ionquant.mztol=10 ionquant.normalization=1 ionquant.peptidefdr=1 ionquant.proteinfdr=1 ionquant.requantify=1 ionquant.rttol=0.4 ionquant.run-ionquant=true ionquant.tp=0 ionquant.uniqueness=0 ionquant.use-labeling=false ionquant.use-lfq=true ionquant.writeindex=0 msbooster.find-best-rt-model=false msbooster.find-best-spectra-model=false msbooster.koina-url= msbooster.predict-rt=true msbooster.predict-spectra=true msbooster.rt-model=DIA-NN msbooster.run-msbooster=true msbooster.spectra-model=DIA-NN msfragger.Y_type_masses= msfragger.activation_types=all msfragger.allowed_missed_cleavage_1=2 msfragger.allowed_missed_cleavage_2=2 msfragger.analyzer_types=all msfragger.calibrate_mass=2 msfragger.check_spectral_files=true msfragger.clip_nTerm_M=true msfragger.deisotope=1 msfragger.delta_mass_exclude_ranges=(-1.5,3.5) msfragger.deneutralloss=1 msfragger.diagnostic_fragments= msfragger.diagnostic_intensity_filter=0 msfragger.digest_max_length=50 msfragger.digest_min_length=7 msfragger.fragment_ion_series=b,y msfragger.fragment_mass_tolerance=20 msfragger.fragment_mass_units=1 msfragger.group_variable=0 msfragger.intensity_transform=0 msfragger.ion_series_definitions= msfragger.isotope_error=0/1/2 msfragger.labile_search_mode=off msfragger.localize_delta_mass=false msfragger.mass_diff_to_variable_mod=0 msfragger.mass_offsets=0 msfragger.mass_offsets_detailed= msfragger.max_fragment_charge=2 msfragger.max_variable_mods_combinations=5000 msfragger.max_variable_mods_per_peptide=3 msfragger.min_fragments_modelling=2 msfragger.min_matched_fragments=4 msfragger.min_sequence_matches=2 msfragger.minimum_peaks=15 msfragger.minimum_ratio=0.01 msfragger.misc.fragger.clear-mz-hi=0 msfragger.misc.fragger.clear-mz-lo=0 msfragger.misc.fragger.digest-mass-hi=5000 msfragger.misc.fragger.digest-mass-lo=500 msfragger.misc.fragger.enzyme-dropdown-1=stricttrypsin msfragger.misc.fragger.enzyme-dropdown-2=null msfragger.misc.fragger.precursor-charge-hi=4 msfragger.misc.fragger.precursor-charge-lo=1 msfragger.misc.fragger.remove-precursor-range-hi=1.5 msfragger.misc.fragger.remove-precursor-range-lo=-1.5 msfragger.misc.slice-db=1 msfragger.num_enzyme_termini=2 msfragger.output_format=pepXML_pin msfragger.output_max_expect=50 msfragger.output_report_topN=1 msfragger.output_report_topN_dda_plus=5 msfragger.output_report_topN_dia1=5 msfragger.override_charge=false msfragger.precursor_mass_lower=-20 msfragger.precursor_mass_mode=selected msfragger.precursor_mass_units=1 msfragger.precursor_mass_upper=20 msfragger.precursor_true_tolerance=20 msfragger.precursor_true_units=1 msfragger.remainder_fragment_masses= msfragger.remove_precursor_peak=1 msfragger.report_alternative_proteins=true msfragger.require_precursor=true msfragger.restrict_deltamass_to=all msfragger.reuse_dia_fragment_peaks=false msfragger.run-msfragger=true msfragger.search_enzyme_cut_1=KR msfragger.search_enzyme_cut_2= msfragger.search_enzyme_name_1=stricttrypsin msfragger.search_enzyme_name_2=null msfragger.search_enzyme_nocut_1= msfragger.search_enzyme_nocut_2= msfragger.search_enzyme_sense_1=C msfragger.search_enzyme_sense_2=C msfragger.table.fix-mods=0.0,C-Term Peptide,true,-1; 0.0,N-Term Peptide,true,-1; 0.0,C-Term Protein,true,-1; 0.0,N-Term Protein,true,-1; 0.0,G (glycine),true,-1; 0.0,A (alanine),true,-1; 0.0,S (serine),true,-1; 0.0,P (proline),true,-1; 0.0,V (valine),true,-1; 0.0,T (threonine),true,-1; 57.02146,C (cysteine),true,-1; 0.0,L (leucine),true,-1; 0.0,I (isoleucine),true,-1; 0.0,N (asparagine),true,-1; 0.0,D (aspartic acid),true,-1; 0.0,Q (glutamine),true,-1; 0.0,K (lysine),true,-1; 0.0,E (glutamic acid),true,-1; 0.0,M (methionine),true,-1; 0.0,H (histidine),true,-1; 0.0,F (phenylalanine),true,-1; 0.0,R (arginine),true,-1; 0.0,Y (tyrosine),true,-1; 0.0,W (tryptophan),true,-1; 0.0,B ,true,-1; 0.0,J,true,-1; 0.0,O,true,-1; 0.0,U,true,-1; 0.0,X,true,-1; 0.0,Z,true,-1 msfragger.table.var-mods=15.9949,M,true,3; 42.0106,[^,true,1; 79.96633,STY,false,3; -17.0265,nQnC,false,1; -18.0106,nE,false,1; 4.025107,K,false,2; 6.020129,R,false,2; 8.014199,K,false,2; 10.008269,R,false,2; 0.0,site_10,false,1; 0.0,site_11,false,1; 0.0,site_12,false,1; 0.0,site_13,false,1; 0.0,site_14,false,1; 0.0,site_15,false,1; 0.0,site_16,false,1 msfragger.track_zero_topN=0 msfragger.use_all_mods_in_first_search=false msfragger.use_detailed_offsets=false msfragger.use_topN_peaks=150 msfragger.write_calibrated_mzml=false msfragger.write_uncalibrated_mgf=false msfragger.zero_bin_accept_expect=0 msfragger.zero_bin_mult_expect=1 opair.activation1=HCD opair.activation2=ETD opair.filterOxonium=true opair.glyco_db= opair.max_glycans=4 opair.max_isotope_error=2 opair.min_isotope_error=0 opair.ms1_tol=20 opair.ms2_tol=20 opair.oxonium_filtering_file= opair.oxonium_minimum_intensity=0.05 opair.reverse_scan_order=false opair.run-opair=false opair.single_scan_type=false peptide-prophet.cmd-opts=--decoyprobs --ppm --accmass --nonparam --expectscore peptide-prophet.combine-pepxml=false peptide-prophet.run-peptide-prophet=false percolator.cmd-opts=--only-psms --no-terminate --post-processing-tdc percolator.keep-tsv-files=false percolator.min-prob=0.5 percolator.run-percolator=true phi-report.dont-use-prot-proph-file=false phi-report.filter=--sequential --prot 0.01 --picked phi-report.pep-level-summary=false phi-report.print-decoys=false phi-report.prot-level-summary=false phi-report.remove-contaminants=false phi-report.run-report=true protein-prophet.cmd-opts=--maxppmdiff 2000000 protein-prophet.run-protein-prophet=true ptmprophet.cmdline=NOSTACK KEEPOLD STATIC EM\=1 NIONS\=b M\:15.9949,n\:42.0106 MINPROB\=0.5 ptmprophet.run-ptmprophet=false ptmshepherd.adv_params=false ptmshepherd.annotation-common=false ptmshepherd.annotation-custom=false ptmshepherd.annotation-glyco=false ptmshepherd.annotation-unimod=true ptmshepherd.annotation_file= ptmshepherd.annotation_tol=0.01 ptmshepherd.cap_y_ions= ptmshepherd.decoy_type=1 ptmshepherd.diag_ions= ptmshepherd.diagmine_diagMinFoldChange=3.0 ptmshepherd.diagmine_diagMinSpecDiff=00.2 ptmshepherd.diagmine_fragMinFoldChange=3.0 ptmshepherd.diagmine_fragMinPropensity=00.1 ptmshepherd.diagmine_fragMinSpecDiff=00.1 ptmshepherd.diagmine_minIonsPerSpec=2 ptmshepherd.diagmine_minPeps=25 ptmshepherd.diagmine_pepMinFoldChange=3.0 ptmshepherd.diagmine_pepMinSpecDiff=00.2 ptmshepherd.glyco_fdr=1.00 ptmshepherd.glyco_isotope_max=3 ptmshepherd.glyco_isotope_min=-1 ptmshepherd.glyco_ppm_tol=50 ptmshepherd.glycodatabase= ptmshepherd.histo_smoothbins=2 ptmshepherd.iontype_a=false ptmshepherd.iontype_b=true ptmshepherd.iontype_c=false ptmshepherd.iontype_x=false ptmshepherd.iontype_y=true ptmshepherd.iontype_z=false ptmshepherd.iterloc_maxEpoch=100 ptmshepherd.iterloc_mode=false ptmshepherd.localization_allowed_res= ptmshepherd.n_glyco=true ptmshepherd.normalization-psms=true ptmshepherd.normalization-scans=false ptmshepherd.output_extended=false ptmshepherd.peakpicking_mass_units=0 ptmshepherd.peakpicking_minPsm=10 ptmshepherd.peakpicking_promRatio=0.3 ptmshepherd.peakpicking_width=0.002 ptmshepherd.precursor_mass_units=0 ptmshepherd.precursor_tol=0.01 ptmshepherd.print_decoys=false ptmshepherd.print_full_glyco_params=false ptmshepherd.prob_mass=0.5 ptmshepherd.remainder_masses= ptmshepherd.remove_glycan_delta_mass=true ptmshepherd.run-shepherd=false ptmshepherd.run_diagextract_mode=false ptmshepherd.run_diagmine_mode=false ptmshepherd.run_glyco_mode=false ptmshepherd.spectra_maxfragcharge=2 ptmshepherd.spectra_ppmtol=20 ptmshepherd.varmod_masses= quantitation.run-label-free-quant=true run-psm-validation=true run-validation-tab=true saintexpress.fragpipe.cmd-opts= saintexpress.max-replicates=10 saintexpress.run-saint-express=false saintexpress.virtual-controls=100 skyline.run-skyline=false skyline.skyline=true skyline.skyline-custom=false skyline.skyline-custom-path= skyline.skyline-daily=false skyline.skyline-mode=0 skyline.skyline-mods-mode=Default speclibgen.convert-pepxml=true speclibgen.convert-psm=false speclibgen.easypqp.extras.max_delta_ppm=15 speclibgen.easypqp.extras.max_delta_unimod=0.02 speclibgen.easypqp.extras.max_glycan_qval=1 speclibgen.easypqp.extras.rt_lowess_fraction=0 speclibgen.easypqp.fragment.a=false speclibgen.easypqp.fragment.b=true speclibgen.easypqp.fragment.c=false speclibgen.easypqp.fragment.x=false speclibgen.easypqp.fragment.y=true speclibgen.easypqp.fragment.z=false speclibgen.easypqp.ignore_unannotated=false speclibgen.easypqp.im-cal=Automatic selection of a run as reference IM speclibgen.easypqp.labile_mode=Regular (not glyco) speclibgen.easypqp.neutral_loss=false speclibgen.easypqp.rt-cal=noiRT speclibgen.easypqp.select-file.text= speclibgen.easypqp.select-im-file.text= speclibgen.keep-intermediate-files=false speclibgen.run-speclibgen=false tab-run.delete_calibrated_mzml=false tab-run.delete_temp_files=false tab-run.sub_mzml_prob_threshold=0.5 tab-run.write_sub_mzml=false tmtintegrator.add_Ref=-1 tmtintegrator.aggregation_method=0 tmtintegrator.allow_overlabel=true tmtintegrator.allow_unlabeled=true tmtintegrator.best_psm=true tmtintegrator.channel_num=TMT-6 tmtintegrator.extraction_tool=IonQuant tmtintegrator.glyco_qval=-1 tmtintegrator.groupby=0 tmtintegrator.log2transformed=true tmtintegrator.max_pep_prob_thres=0 tmtintegrator.min_ntt=0 tmtintegrator.min_pep_prob=0.9 tmtintegrator.min_percent=0.05 tmtintegrator.min_purity=0.5 tmtintegrator.min_site_prob=-1 tmtintegrator.mod_tag=none tmtintegrator.ms1_int=true tmtintegrator.outlier_removal=true tmtintegrator.philosopher-msstats=false tmtintegrator.print_RefInt=false tmtintegrator.prot_exclude=none tmtintegrator.prot_norm=0 tmtintegrator.psm_norm=false tmtintegrator.quant_level=2 tmtintegrator.ref_tag=Bridge tmtintegrator.run-tmtintegrator=false tmtintegrator.tolerance=20 tmtintegrator.top3_pep=true tmtintegrator.unique_gene=0 tmtintegrator.unique_pep=false tmtintegrator.use_glycan_composition=false workdir=F\:\\testbeijing workflow.input.data-type.im-ms=false workflow.input.data-type.regular-ms=true workflow.misc.save-sdrf=true workflow.ram=0 workflow.threads=15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CheckCentroid C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -Xmx39G -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\batmass-io-1.33.4.jar com.dmtavt.fragpipe.util.CheckCentroid F:\PXD031498\20210070_HC1.mzML 15 Done in 7.9 s. Process 'CheckCentroid' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:50" level=info msg="Executing Workspace v5.1.1" time="20:37:50" level=info msg="Removing workspace" time="20:37:51" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\8700ac32-889a-4042-b7a0-42b3c97717bf time="20:37:51" level=info msg="Executing Workspace v5.1.1" time="20:37:51" level=info msg="Creating workspace" time="20:37:51" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:51" level=info msg="Executing Workspace v5.1.1" time="20:37:51" level=info msg="Removing workspace" time="20:37:51" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\15deaa73-a7f6-4e4b-bafd-843c7b57a10f time="20:37:51" level=info msg="Executing Workspace v5.1.1" time="20:37:51" level=info msg="Creating workspace" time="20:37:51" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:51" level=info msg="Executing Workspace v5.1.1" time="20:37:51" level=info msg="Removing workspace" time="20:37:51" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c380892e-cdac-4976-a51c-142a194d4c83 time="20:37:52" level=info msg="Executing Workspace v5.1.1" time="20:37:52" level=info msg="Creating workspace" time="20:37:52" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:52" level=info msg="Executing Workspace v5.1.1" time="20:37:52" level=info msg="Removing workspace" time="20:37:52" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3a541285-3414-4425-ac9a-0e075aeef784 time="20:37:52" level=info msg="Executing Workspace v5.1.1" time="20:37:52" level=info msg="Creating workspace" time="20:37:52" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:52" level=info msg="Executing Workspace v5.1.1" time="20:37:52" level=info msg="Removing workspace" time="20:37:52" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97994057-4b58-4c06-8d8a-2803125c3d9d time="20:37:53" level=info msg="Executing Workspace v5.1.1" time="20:37:53" level=info msg="Creating workspace" time="20:37:53" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:53" level=info msg="Executing Workspace v5.1.1" time="20:37:53" level=info msg="Removing workspace" time="20:37:53" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a3bb0b6f-0025-4a53-a221-44e2a88ed777 time="20:37:53" level=info msg="Executing Workspace v5.1.1" time="20:37:53" level=info msg="Creating workspace" time="20:37:53" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:53" level=info msg="Executing Workspace v5.1.1" time="20:37:53" level=info msg="Removing workspace" time="20:37:53" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\07c869ba-754b-494a-8f8a-61b62dc3b2f2 time="20:37:53" level=info msg="Executing Workspace v5.1.1" time="20:37:53" level=info msg="Creating workspace" time="20:37:53" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:54" level=info msg="Executing Workspace v5.1.1" time="20:37:54" level=info msg="Removing workspace" time="20:37:54" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3917ecda-4bd0-420b-8fac-3ac8036fdfef time="20:37:54" level=info msg="Executing Workspace v5.1.1" time="20:37:54" level=info msg="Creating workspace" time="20:37:54" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:54" level=info msg="Executing Workspace v5.1.1" time="20:37:54" level=info msg="Removing workspace" time="20:37:54" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\672a4c9e-f763-42fa-b194-adbe1c3e1439 time="20:37:54" level=info msg="Executing Workspace v5.1.1" time="20:37:54" level=info msg="Creating workspace" time="20:37:54" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:55" level=info msg="Executing Workspace v5.1.1" time="20:37:55" level=info msg="Removing workspace" time="20:37:55" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3a1da4da-0cbb-4cf9-97e0-27625bd583a3 time="20:37:55" level=info msg="Executing Workspace v5.1.1" time="20:37:55" level=info msg="Creating workspace" time="20:37:55" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:55" level=info msg="Executing Workspace v5.1.1" time="20:37:55" level=info msg="Removing workspace" time="20:37:55" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e5db7a40-be2f-4114-a2aa-59f893b83b14 time="20:37:55" level=info msg="Executing Workspace v5.1.1" time="20:37:55" level=info msg="Creating workspace" time="20:37:55" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:55" level=info msg="Executing Workspace v5.1.1" time="20:37:55" level=info msg="Removing workspace" time="20:37:55" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a2826a09-2a02-418c-a23e-777ac1bc4630 time="20:37:56" level=info msg="Executing Workspace v5.1.1" time="20:37:56" level=info msg="Creating workspace" time="20:37:56" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:56" level=info msg="Executing Workspace v5.1.1" time="20:37:56" level=info msg="Removing workspace" time="20:37:56" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\bb6070ef-2b9c-46a4-80b1-fde2a47ecda7 time="20:37:56" level=info msg="Executing Workspace v5.1.1" time="20:37:56" level=info msg="Creating workspace" time="20:37:56" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:56" level=info msg="Executing Workspace v5.1.1" time="20:37:56" level=info msg="Removing workspace" time="20:37:56" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\cfd9a09b-c572-40dc-b8ed-df7b98bcea99 time="20:37:56" level=info msg="Executing Workspace v5.1.1" time="20:37:56" level=info msg="Creating workspace" time="20:37:56" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:57" level=info msg="Executing Workspace v5.1.1" time="20:37:57" level=info msg="Removing workspace" time="20:37:57" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\00862e77-7401-4f8b-8bdd-56aa26c71877 time="20:37:57" level=info msg="Executing Workspace v5.1.1" time="20:37:57" level=info msg="Creating workspace" time="20:37:57" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:57" level=info msg="Executing Workspace v5.1.1" time="20:37:57" level=info msg="Removing workspace" time="20:37:57" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5173929e-4ba4-4015-95c1-e4bdf33e3b2b time="20:37:57" level=info msg="Executing Workspace v5.1.1" time="20:37:57" level=info msg="Creating workspace" time="20:37:57" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:58" level=info msg="Executing Workspace v5.1.1" time="20:37:58" level=info msg="Removing workspace" time="20:37:58" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9aef1684-cb99-443b-a5d2-c85dd0825148 time="20:37:58" level=info msg="Executing Workspace v5.1.1" time="20:37:58" level=info msg="Creating workspace" time="20:37:58" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:58" level=info msg="Executing Workspace v5.1.1" time="20:37:58" level=info msg="Removing workspace" time="20:37:58" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5e86f4d4-350d-474f-9190-393fd70f0d43 time="20:37:58" level=info msg="Executing Workspace v5.1.1" time="20:37:58" level=info msg="Creating workspace" time="20:37:58" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:58" level=info msg="Executing Workspace v5.1.1" time="20:37:58" level=info msg="Removing workspace" time="20:37:58" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\15368398-0e09-4ddd-8b51-4cfd7e717c21 time="20:37:59" level=info msg="Executing Workspace v5.1.1" time="20:37:59" level=info msg="Creating workspace" time="20:37:59" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:59" level=info msg="Executing Workspace v5.1.1" time="20:37:59" level=info msg="Removing workspace" time="20:37:59" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\0c02f3f3-bbdb-4bdf-8a16-79593b839179 time="20:37:59" level=info msg="Executing Workspace v5.1.1" time="20:37:59" level=info msg="Creating workspace" time="20:37:59" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:37:59" level=info msg="Executing Workspace v5.1.1" time="20:37:59" level=info msg="Removing workspace" time="20:37:59" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a6b25c34-1467-4c8a-97d0-43c7b41b210b time="20:37:59" level=info msg="Executing Workspace v5.1.1" time="20:37:59" level=info msg="Creating workspace" time="20:37:59" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:00" level=info msg="Executing Workspace v5.1.1" time="20:38:00" level=info msg="Removing workspace" time="20:38:00" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\809b1ae6-b48f-4364-aabf-94f5e52b5ba1 time="20:38:00" level=info msg="Executing Workspace v5.1.1" time="20:38:00" level=info msg="Creating workspace" time="20:38:00" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:00" level=info msg="Executing Workspace v5.1.1" time="20:38:00" level=info msg="Removing workspace" time="20:38:00" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2c82b779-1a37-47f0-96a3-c520e4373b4a time="20:38:00" level=info msg="Executing Workspace v5.1.1" time="20:38:00" level=info msg="Creating workspace" time="20:38:00" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:01" level=info msg="Executing Workspace v5.1.1" time="20:38:01" level=info msg="Removing workspace" time="20:38:01" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\926ce20d-9a47-463f-a598-6a93130a6fd3 time="20:38:01" level=info msg="Executing Workspace v5.1.1" time="20:38:01" level=info msg="Creating workspace" time="20:38:01" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:01" level=info msg="Executing Workspace v5.1.1" time="20:38:01" level=info msg="Removing workspace" time="20:38:01" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6ba5427a-6824-4905-823e-f32c7523aa98 time="20:38:01" level=info msg="Executing Workspace v5.1.1" time="20:38:01" level=info msg="Creating workspace" time="20:38:01" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:01" level=info msg="Executing Workspace v5.1.1" time="20:38:01" level=info msg="Removing workspace" time="20:38:01" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\23af3b49-9f09-4baf-a187-8096c377a236 time="20:38:02" level=info msg="Executing Workspace v5.1.1" time="20:38:02" level=info msg="Creating workspace" time="20:38:02" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:02" level=info msg="Executing Workspace v5.1.1" time="20:38:02" level=info msg="Removing workspace" time="20:38:02" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5602c47d-5f18-4483-a35a-a809b24a189a time="20:38:02" level=info msg="Executing Workspace v5.1.1" time="20:38:02" level=info msg="Creating workspace" time="20:38:02" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:02" level=info msg="Executing Workspace v5.1.1" time="20:38:02" level=info msg="Removing workspace" time="20:38:02" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f3b1b3ba-5d2b-4490-b52c-0d36be25f222 time="20:38:02" level=info msg="Executing Workspace v5.1.1" time="20:38:03" level=info msg="Creating workspace" time="20:38:03" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:03" level=info msg="Executing Workspace v5.1.1" time="20:38:03" level=info msg="Removing workspace" time="20:38:03" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6e7f3139-9eae-4f03-8ea8-c8f21696f3be time="20:38:03" level=info msg="Executing Workspace v5.1.1" time="20:38:03" level=info msg="Creating workspace" time="20:38:03" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:03" level=info msg="Executing Workspace v5.1.1" time="20:38:03" level=info msg="Removing workspace" time="20:38:03" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\db6c5082-7614-452c-93dd-dcdb0e9925a3 time="20:38:03" level=info msg="Executing Workspace v5.1.1" time="20:38:03" level=info msg="Creating workspace" time="20:38:03" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:04" level=info msg="Executing Workspace v5.1.1" time="20:38:04" level=info msg="Removing workspace" time="20:38:04" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e9c510b4-7da4-4d98-8481-1d1432637517 time="20:38:04" level=info msg="Executing Workspace v5.1.1" time="20:38:04" level=info msg="Creating workspace" time="20:38:04" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:04" level=info msg="Executing Workspace v5.1.1" time="20:38:04" level=info msg="Removing workspace" time="20:38:04" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\12f48ec7-4033-44b4-a9af-9e7924083b30 time="20:38:04" level=info msg="Executing Workspace v5.1.1" time="20:38:04" level=info msg="Creating workspace" time="20:38:04" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:04" level=info msg="Executing Workspace v5.1.1" time="20:38:04" level=info msg="Removing workspace" time="20:38:04" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\df36cfe8-0b13-4fe9-aa1a-837112b50945 time="20:38:05" level=info msg="Executing Workspace v5.1.1" time="20:38:05" level=info msg="Creating workspace" time="20:38:05" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:05" level=info msg="Executing Workspace v5.1.1" time="20:38:05" level=info msg="Removing workspace" time="20:38:05" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f79a714c-4570-49da-a0de-2bc741a2cfdb time="20:38:05" level=info msg="Executing Workspace v5.1.1" time="20:38:05" level=info msg="Creating workspace" time="20:38:05" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:05" level=info msg="Executing Workspace v5.1.1" time="20:38:05" level=info msg="Removing workspace" time="20:38:05" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6f52348b-bf8e-4560-955c-2abdc8f0e85d time="20:38:06" level=info msg="Executing Workspace v5.1.1" time="20:38:06" level=info msg="Creating workspace" time="20:38:06" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:06" level=info msg="Executing Workspace v5.1.1" time="20:38:06" level=info msg="Removing workspace" time="20:38:06" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\141d05eb-8c90-4e43-8386-18d75ec83aaa time="20:38:06" level=info msg="Executing Workspace v5.1.1" time="20:38:06" level=info msg="Creating workspace" time="20:38:06" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:06" level=info msg="Executing Workspace v5.1.1" time="20:38:06" level=info msg="Removing workspace" time="20:38:06" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e3355063-6888-4740-acee-0f876ec5c6c4 time="20:38:06" level=info msg="Executing Workspace v5.1.1" time="20:38:06" level=info msg="Creating workspace" time="20:38:06" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:07" level=info msg="Executing Workspace v5.1.1" time="20:38:07" level=info msg="Removing workspace" time="20:38:07" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2831cc71-15c7-4177-8f5c-89d2f7107f03 time="20:38:07" level=info msg="Executing Workspace v5.1.1" time="20:38:07" level=info msg="Creating workspace" time="20:38:07" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:07" level=info msg="Executing Workspace v5.1.1" time="20:38:07" level=info msg="Removing workspace" time="20:38:07" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\78618fd4-c120-451c-b984-6b6da156251f time="20:38:07" level=info msg="Executing Workspace v5.1.1" time="20:38:07" level=info msg="Creating workspace" time="20:38:07" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:07" level=info msg="Executing Workspace v5.1.1" time="20:38:07" level=info msg="Removing workspace" time="20:38:07" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\f9995d51-6c9c-47b6-acf0-330b2ed1c1a6 time="20:38:08" level=info msg="Executing Workspace v5.1.1" time="20:38:08" level=info msg="Creating workspace" time="20:38:08" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:08" level=info msg="Executing Workspace v5.1.1" time="20:38:08" level=info msg="Removing workspace" time="20:38:08" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\0ec43af5-8782-4635-9301-31359ad1ac43 time="20:38:08" level=info msg="Executing Workspace v5.1.1" time="20:38:08" level=info msg="Creating workspace" time="20:38:08" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:08" level=info msg="Executing Workspace v5.1.1" time="20:38:08" level=info msg="Removing workspace" time="20:38:08" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\cc2fce0f-5c40-41ae-8a77-deecbc07a124 time="20:38:09" level=info msg="Executing Workspace v5.1.1" time="20:38:09" level=info msg="Creating workspace" time="20:38:09" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:09" level=info msg="Executing Workspace v5.1.1" time="20:38:09" level=info msg="Removing workspace" time="20:38:09" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6ab00e92-39d7-410d-9ec8-4e5d13f72058 time="20:38:09" level=info msg="Executing Workspace v5.1.1" time="20:38:09" level=info msg="Creating workspace" time="20:38:09" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:09" level=info msg="Executing Workspace v5.1.1" time="20:38:09" level=info msg="Removing workspace" time="20:38:09" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\83fbe5a2-dca6-4d30-a117-e1a5b729074d time="20:38:09" level=info msg="Executing Workspace v5.1.1" time="20:38:09" level=info msg="Creating workspace" time="20:38:09" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:10" level=info msg="Executing Workspace v5.1.1" time="20:38:10" level=info msg="Removing workspace" time="20:38:10" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\43155ca7-726c-43e6-b5c7-75c30bdbd363 time="20:38:10" level=info msg="Executing Workspace v5.1.1" time="20:38:10" level=info msg="Creating workspace" time="20:38:10" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:10" level=info msg="Executing Workspace v5.1.1" time="20:38:10" level=info msg="Removing workspace" time="20:38:10" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\4e827eeb-47a8-4b1c-97e4-1edb36a497da time="20:38:10" level=info msg="Executing Workspace v5.1.1" time="20:38:10" level=info msg="Creating workspace" time="20:38:10" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:10" level=info msg="Executing Workspace v5.1.1" time="20:38:11" level=info msg="Removing workspace" time="20:38:11" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\61aafe0e-8e31-4c58-b416-baa3b336af2d time="20:38:11" level=info msg="Executing Workspace v5.1.1" time="20:38:11" level=info msg="Creating workspace" time="20:38:11" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:11" level=info msg="Executing Workspace v5.1.1" time="20:38:11" level=info msg="Removing workspace" time="20:38:11" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\aefad09d-cc77-44de-ba51-81514424fd8c time="20:38:11" level=info msg="Executing Workspace v5.1.1" time="20:38:11" level=info msg="Creating workspace" time="20:38:11" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:11" level=info msg="Executing Workspace v5.1.1" time="20:38:11" level=info msg="Removing workspace" time="20:38:11" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\bff375c9-df60-412a-85f9-7ffcd0b6e77f time="20:38:12" level=info msg="Executing Workspace v5.1.1" time="20:38:12" level=info msg="Creating workspace" time="20:38:12" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:12" level=info msg="Executing Workspace v5.1.1" time="20:38:12" level=info msg="Removing workspace" time="20:38:12" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\22cf2fb4-5e80-493b-b7a4-be0939c81e31 time="20:38:12" level=info msg="Executing Workspace v5.1.1" time="20:38:12" level=info msg="Creating workspace" time="20:38:12" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:12" level=info msg="Executing Workspace v5.1.1" time="20:38:12" level=info msg="Removing workspace" time="20:38:12" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\fadc0a9f-4d7c-4da9-9372-cdeb184516b3 time="20:38:12" level=info msg="Executing Workspace v5.1.1" time="20:38:12" level=info msg="Creating workspace" time="20:38:12" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:13" level=info msg="Executing Workspace v5.1.1" time="20:38:13" level=info msg="Removing workspace" time="20:38:13" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\ec158d15-062c-4eb7-ad9f-0387f76a4d03 time="20:38:13" level=info msg="Executing Workspace v5.1.1" time="20:38:13" level=info msg="Creating workspace" time="20:38:13" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:13" level=info msg="Executing Workspace v5.1.1" time="20:38:13" level=info msg="Removing workspace" time="20:38:13" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\74ecc113-4329-4063-8a3e-f4ee2c6fb548 time="20:38:13" level=info msg="Executing Workspace v5.1.1" time="20:38:13" level=info msg="Creating workspace" time="20:38:13" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:13" level=info msg="Executing Workspace v5.1.1" time="20:38:14" level=info msg="Removing workspace" time="20:38:14" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9c84351f-1dec-4d4e-9827-60fbda8cecb0 time="20:38:14" level=info msg="Executing Workspace v5.1.1" time="20:38:14" level=info msg="Creating workspace" time="20:38:14" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:14" level=info msg="Executing Workspace v5.1.1" time="20:38:14" level=info msg="Removing workspace" time="20:38:14" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\58d69813-314d-471f-af9f-cbea8bffb170 time="20:38:14" level=info msg="Executing Workspace v5.1.1" time="20:38:14" level=info msg="Creating workspace" time="20:38:14" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:14" level=info msg="Executing Workspace v5.1.1" time="20:38:14" level=info msg="Removing workspace" time="20:38:14" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c18d0725-1cc1-423a-8c8e-a6a691bf9527 time="20:38:15" level=info msg="Executing Workspace v5.1.1" time="20:38:15" level=info msg="Creating workspace" time="20:38:15" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:15" level=info msg="Executing Workspace v5.1.1" time="20:38:15" level=info msg="Removing workspace" time="20:38:15" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e668fed4-aee1-4689-8f53-8e88d6811ec6 time="20:38:15" level=info msg="Executing Workspace v5.1.1" time="20:38:15" level=info msg="Creating workspace" time="20:38:15" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:15" level=info msg="Executing Workspace v5.1.1" time="20:38:15" level=info msg="Removing workspace" time="20:38:15" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\be04a46c-114e-4d0c-82a2-8a98962a16bd time="20:38:15" level=info msg="Executing Workspace v5.1.1" time="20:38:15" level=info msg="Creating workspace" time="20:38:15" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:16" level=info msg="Executing Workspace v5.1.1" time="20:38:16" level=info msg="Removing workspace" time="20:38:16" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\5eb9bc7c-f01c-42f9-a4a9-904f338ef4c7 time="20:38:16" level=info msg="Executing Workspace v5.1.1" time="20:38:16" level=info msg="Creating workspace" time="20:38:16" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:16" level=info msg="Executing Workspace v5.1.1" time="20:38:16" level=info msg="Removing workspace" time="20:38:16" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\1053deec-5ca5-44bb-a990-a4865065b0c6 time="20:38:17" level=info msg="Executing Workspace v5.1.1" time="20:38:17" level=info msg="Creating workspace" time="20:38:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:17" level=info msg="Executing Workspace v5.1.1" time="20:38:17" level=info msg="Removing workspace" time="20:38:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\57923879-b8c0-4f03-813a-8ae4821c894d time="20:38:17" level=info msg="Executing Workspace v5.1.1" time="20:38:17" level=info msg="Creating workspace" time="20:38:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:17" level=info msg="Executing Workspace v5.1.1" time="20:38:17" level=info msg="Removing workspace" time="20:38:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\b10737cc-d9e7-44a2-a9b0-b9fe2d98f44d time="20:38:17" level=info msg="Executing Workspace v5.1.1" time="20:38:17" level=info msg="Creating workspace" time="20:38:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:18" level=info msg="Executing Workspace v5.1.1" time="20:38:18" level=info msg="Removing workspace" time="20:38:18" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97aa14b1-1b1d-4ee2-bd88-3be992f7ca99 time="20:38:18" level=info msg="Executing Workspace v5.1.1" time="20:38:18" level=info msg="Creating workspace" time="20:38:18" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:18" level=info msg="Executing Workspace v5.1.1" time="20:38:18" level=info msg="Removing workspace" time="20:38:18" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\d16f67e3-20c1-4a16-a53d-112239902bef time="20:38:18" level=info msg="Executing Workspace v5.1.1" time="20:38:18" level=info msg="Creating workspace" time="20:38:18" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:18" level=info msg="Executing Workspace v5.1.1" time="20:38:18" level=info msg="Removing workspace" time="20:38:19" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\6e6e146a-a206-428c-8a7c-36f4cda46001 time="20:38:19" level=info msg="Executing Workspace v5.1.1" time="20:38:19" level=info msg="Creating workspace" time="20:38:19" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:19" level=info msg="Executing Workspace v5.1.1" time="20:38:19" level=info msg="Removing workspace" time="20:38:19" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\70475bab-1133-4670-bd13-f38d0bd39ebb time="20:38:19" level=info msg="Executing Workspace v5.1.1" time="20:38:19" level=info msg="Creating workspace" time="20:38:19" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:19" level=info msg="Executing Workspace v5.1.1" time="20:38:19" level=info msg="Removing workspace" time="20:38:19" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\80735f7b-8a1b-4a9b-aa7d-6bca7f38127a time="20:38:20" level=info msg="Executing Workspace v5.1.1" time="20:38:20" level=info msg="Creating workspace" time="20:38:20" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:20" level=info msg="Executing Workspace v5.1.1" time="20:38:20" level=info msg="Removing workspace" time="20:38:20" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2ea3f34f-f48f-4856-8b98-fa90b5151810 time="20:38:20" level=info msg="Executing Workspace v5.1.1" time="20:38:20" level=info msg="Creating workspace" time="20:38:20" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:20" level=info msg="Executing Workspace v5.1.1" time="20:38:20" level=info msg="Removing workspace" time="20:38:20" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\75b933f8-5c86-4285-ba3d-e69505832bef time="20:38:20" level=info msg="Executing Workspace v5.1.1" time="20:38:20" level=info msg="Creating workspace" time="20:38:20" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:21" level=info msg="Executing Workspace v5.1.1" time="20:38:21" level=info msg="Removing workspace" time="20:38:21" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\71fd320d-c141-4c11-9f14-ca97685cb2af time="20:38:21" level=info msg="Executing Workspace v5.1.1" time="20:38:21" level=info msg="Creating workspace" time="20:38:21" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:21" level=info msg="Executing Workspace v5.1.1" time="20:38:21" level=info msg="Removing workspace" time="20:38:21" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2a177e12-0fd3-4c47-80c8-179b07402701 time="20:38:21" level=info msg="Executing Workspace v5.1.1" time="20:38:21" level=info msg="Creating workspace" time="20:38:21" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:21" level=info msg="Executing Workspace v5.1.1" time="20:38:21" level=info msg="Removing workspace" time="20:38:22" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\1e583a4f-5d9b-46c6-9e23-9094b7e510ba time="20:38:22" level=info msg="Executing Workspace v5.1.1" time="20:38:22" level=info msg="Creating workspace" time="20:38:22" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:22" level=info msg="Executing Workspace v5.1.1" time="20:38:22" level=info msg="Removing workspace" time="20:38:22" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\97f639f8-f3d4-47a4-8c19-14ab37786f4c time="20:38:22" level=info msg="Executing Workspace v5.1.1" time="20:38:22" level=info msg="Creating workspace" time="20:38:22" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:22" level=info msg="Executing Workspace v5.1.1" time="20:38:22" level=info msg="Removing workspace" time="20:38:22" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\b9367796-ebd5-465b-8fbf-69b0b7583ed4 time="20:38:23" level=info msg="Executing Workspace v5.1.1" time="20:38:23" level=info msg="Creating workspace" time="20:38:23" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:23" level=info msg="Executing Workspace v5.1.1" time="20:38:23" level=info msg="Removing workspace" time="20:38:23" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a2092462-b64c-48da-a13d-20d721e8a276 time="20:38:23" level=info msg="Executing Workspace v5.1.1" time="20:38:23" level=info msg="Creating workspace" time="20:38:23" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:23" level=info msg="Executing Workspace v5.1.1" time="20:38:23" level=info msg="Removing workspace" time="20:38:23" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\706c03d9-6d32-44e6-87b2-f49eb1ef935c time="20:38:24" level=info msg="Executing Workspace v5.1.1" time="20:38:24" level=info msg="Creating workspace" time="20:38:24" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:24" level=info msg="Executing Workspace v5.1.1" time="20:38:24" level=info msg="Removing workspace" time="20:38:24" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\2bd421a8-6492-40ce-bb18-c27638c614c0 time="20:38:24" level=info msg="Executing Workspace v5.1.1" time="20:38:24" level=info msg="Creating workspace" time="20:38:24" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:24" level=info msg="Executing Workspace v5.1.1" time="20:38:24" level=info msg="Removing workspace" time="20:38:24" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\26f459f5-3dba-4800-99df-afffc5fc6081 time="20:38:24" level=info msg="Executing Workspace v5.1.1" time="20:38:24" level=info msg="Creating workspace" time="20:38:24" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:25" level=info msg="Executing Workspace v5.1.1" time="20:38:25" level=info msg="Removing workspace" time="20:38:25" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\70c93bd0-f202-452e-b278-4f013f9e623c time="20:38:25" level=info msg="Executing Workspace v5.1.1" time="20:38:25" level=info msg="Creating workspace" time="20:38:25" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:25" level=info msg="Executing Workspace v5.1.1" time="20:38:25" level=info msg="Removing workspace" time="20:38:25" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\04b0910c-a031-45c3-99e2-28cdcd66e3ea time="20:38:25" level=info msg="Executing Workspace v5.1.1" time="20:38:25" level=info msg="Creating workspace" time="20:38:25" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:26" level=info msg="Executing Workspace v5.1.1" time="20:38:26" level=info msg="Removing workspace" time="20:38:26" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\9c53508c-65ec-4ff7-b499-940f6cbe7304 time="20:38:26" level=info msg="Executing Workspace v5.1.1" time="20:38:26" level=info msg="Creating workspace" time="20:38:26" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:26" level=info msg="Executing Workspace v5.1.1" time="20:38:26" level=info msg="Removing workspace" time="20:38:26" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\3878404c-a8f0-4679-b259-3362e11e1844 time="20:38:26" level=info msg="Executing Workspace v5.1.1" time="20:38:26" level=info msg="Creating workspace" time="20:38:26" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:26" level=info msg="Executing Workspace v5.1.1" time="20:38:26" level=info msg="Removing workspace" time="20:38:26" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\c516d199-a30c-4d61-b142-883d4c8bacc8 time="20:38:27" level=info msg="Executing Workspace v5.1.1" time="20:38:27" level=info msg="Creating workspace" time="20:38:27" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:27" level=info msg="Executing Workspace v5.1.1" time="20:38:27" level=info msg="Removing workspace" time="20:38:27" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a0f10dfc-6aaf-4a1b-b3af-5c70b0b90740 time="20:38:27" level=info msg="Executing Workspace v5.1.1" time="20:38:27" level=info msg="Creating workspace" time="20:38:27" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:27" level=info msg="Executing Workspace v5.1.1" time="20:38:27" level=info msg="Removing workspace" time="20:38:27" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\46d5b24d-560d-4347-862a-fbf1eb6e8c96 time="20:38:27" level=info msg="Executing Workspace v5.1.1" time="20:38:28" level=info msg="Creating workspace" time="20:38:28" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:28" level=info msg="Executing Workspace v5.1.1" time="20:38:28" level=info msg="Removing workspace" time="20:38:28" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\d18a7706-c893-48dd-bb42-be283fb0ccf0 time="20:38:28" level=info msg="Executing Workspace v5.1.1" time="20:38:28" level=info msg="Creating workspace" time="20:38:28" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:28" level=info msg="Executing Workspace v5.1.1" time="20:38:28" level=info msg="Removing workspace" time="20:38:28" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\e825be42-1e65-477a-bf9c-7490360836c2 time="20:38:28" level=info msg="Executing Workspace v5.1.1" time="20:38:28" level=info msg="Creating workspace" time="20:38:28" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:29" level=info msg="Executing Workspace v5.1.1" time="20:38:29" level=info msg="Removing workspace" time="20:38:29" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\a9f6bf05-eef9-4abb-a3b0-fd145edf7c18 time="20:38:29" level=info msg="Executing Workspace v5.1.1" time="20:38:29" level=info msg="Creating workspace" time="20:38:29" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:29" level=info msg="Executing Workspace v5.1.1" time="20:38:29" level=info msg="Removing workspace" time="20:38:29" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\8a902dca-d9ba-46f8-9b9c-bc2b50a9f5a3 time="20:38:29" level=info msg="Executing Workspace v5.1.1" time="20:38:29" level=info msg="Creating workspace" time="20:38:29" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:29" level=info msg="Executing Workspace v5.1.1" time="20:38:29" level=info msg="Removing workspace" time="20:38:29" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\61b21895-1334-4d86-962d-37e277513a10 time="20:38:30" level=info msg="Executing Workspace v5.1.1" time="20:38:30" level=info msg="Creating workspace" time="20:38:30" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="20:38:30" level=info msg="Executing Workspace v5.1.1" time="20:38:30" level=info msg="Removing workspace" time="20:38:30" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\User\AppData\Local\Temp\52bab0e6-43b4-4bcb-af25-b24afb43b1f7 time="20:38:30" level=info msg="Executing Workspace v5.1.1" time="20:38:30" level=info msg="Creating workspace" time="20:38:30" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 MSFragger [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx39G C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSFragger-4.1\MSFragger-4.1.jar F:\testbeijing\fragger.params F:\PXD031498\20210070_HC1.mzML F:\PXD031498\20210105_HC_6.mzML F:\PXD031498\20210105_HC_7.mzML F:\PXD031498\20210105_HC_8_20210401021911.mzML F:\PXD031498\20210105_HC_9.mzML F:\PXD031498\20210155_HC10.mzML F:\PXD031498\20210155_HC11.mzML F:\PXD031498\20210155_HC12.mzML F:\PXD031498\20210155_HC13.mzML F:\PXD031498\20210155_HC14.mzML F:\PXD031498\20210155_HC15.mzML F:\PXD031498\20210070_HC2.mzML F:\PXD031498\20210155_HC16.mzML F:\PXD031498\20210155_HC17.mzML F:\PXD031498\20210155_HC1_20210513132744.mzML F:\PXD031498\20210155_HC2_20210513153447.mzML F:\PXD031498\20210155_HC3_20210513174150.mzML F:\PXD031498\20210155_HC4.mzML F:\PXD031498\20210155_HC5.mzML F:\PXD031498\20210155_HC6.mzML F:\PXD031498\20210155_HC7.mzML F:\PXD031498\20210155_HC8.mzML F:\PXD031498\20210070_HC3.mzML F:\PXD031498\20210155_HC9.mzML F:\PXD031498\20210105_HC_10.mzML F:\PXD031498\20210105_HC_1_20210330145706.mzML F:\PXD031498\20210105_HC_2_20210330170407.mzML F:\PXD031498\20210105_HC_3.mzML F:\PXD031498\20210105_HC_4.mzML F:\PXD031498\20210105_HC_5.mzML F:\PXD031498\20210070_APCA_NEG1.mzML F:\PXD031498\20210105_ACPA_N_4.mzML F:\PXD031498\20210105_ACPA_N_5.mzML F:\PXD031498\20210105_ACPA_P_1.mzML F:\PXD031498\20210105_ACPA_P_10.mzML F:\PXD031498\20210105_ACPA_P_11.mzML F:\PXD031498\20210105_ACPA_P_12.mzML F:\PXD031498\20210105_ACPA_P_13.mzML F:\PXD031498\20210105_ACPA_P_2.mzML F:\PXD031498\20210105_ACPA_P_3.mzML F:\PXD031498\20210105_ACPA_P_4.mzML F:\PXD031498\20210070_APCA_NEG2.mzML F:\PXD031498\20210105_ACPA_P_5.mzML F:\PXD031498\20210105_ACPA_P_6.mzML F:\PXD031498\20210105_ACPA_P_7.mzML F:\PXD031498\20210105_ACPA_P_8.mzML F:\PXD031498\20210105_ACPA_P_9.mzML F:\PXD031498\20210155_APCA_NEG1.mzML F:\PXD031498\20210155_APCA_NEG2.mzML F:\PXD031498\20210155_APCA_NEG3.mzML F:\PXD031498\20210155_APCA_NEG4.mzML F:\PXD031498\20210155_APCA_NEG5.mzML F:\PXD031498\20210070_APCA_NEG3.mzML F:\PXD031498\20210155_APCA_NEG6.mzML F:\PXD031498\20210155_APCA_NEG7.mzML F:\PXD031498\20210155_APCA_POS1.mzML F:\PXD031498\20210155_APCA_POS10.mzML F:\PXD031498\20210155_APCA_POS11.mzML F:\PXD031498\20210155_APCA_POS12.mzML F:\PXD031498\20210155_APCA_POS13.mzML F:\PXD031498\20210155_APCA_POS14.mzML F:\PXD031498\20210155_APCA_POS15.mzML F:\PXD031498\20210155_APCA_POS16.mzML F:\PXD031498\20210070_APCA_POS1.mzML F:\PXD031498\20210155_APCA_POS17.mzML F:\PXD031498\20210155_APCA_POS18.mzML F:\PXD031498\20210155_APCA_POS19.mzML F:\PXD031498\20210155_APCA_POS2.mzML F:\PXD031498\20210155_APCA_POS20.mzML F:\PXD031498\20210155_APCA_POS21.mzML F:\PXD031498\20210155_APCA_POS22.mzML F:\PXD031498\20210155_APCA_POS23.mzML F:\PXD031498\20210155_APCA_POS24.mzML F:\PXD031498\20210155_APCA_POS25.mzML F:\PXD031498\20210070_APCA_POS2.mzML F:\PXD031498\20210155_APCA_POS26.mzML F:\PXD031498\20210155_APCA_POS27.mzML F:\PXD031498\20210155_APCA_POS28.mzML F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML F:\PXD031498\20210155_APCA_POS3.mzML F:\PXD031498\20210155_APCA_POS4.mzML F:\PXD031498\20210155_APCA_POS5.mzML F:\PXD031498\20210155_APCA_POS6.mzML F:\PXD031498\20210155_APCA_POS7.mzML F:\PXD031498\20210155_APCA_POS8.mzML F:\PXD031498\20210070_APCA_POS3.mzML F:\PXD031498\20210155_APCA_POS9.mzML F:\PXD031498\20210105_ACPA_N_1.mzML F:\PXD031498\20210105_ACPA_N_2.mzML F:\PXD031498\20210105_ACPA_N_3.mzML MSFragger version MSFragger-4.1 Batmass-IO version 1.33.4 timsdata library version timsdata-2-21-0-4 (c) University of Michigan RawFileReader reading tool. Copyright (c) 2016 by Thermo Fisher Scientific, Inc. All rights reserved. timdTOF .d reading tool. Copyright (c) 2022 by Bruker Daltonics GmbH & Co. KG. All rights reserved. System OS: Windows 10, Architecture: AMD64 Java Info: 17.0.10, OpenJDK 64-Bit Server VM, Eclipse Adoptium JVM started with 39 GB memory Checking database... Checking spectral files... F:\PXD031498\20210070_HC1.mzML: Scans = 94312; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_HC2.mzML: Scans = 91009; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_6.mzML: Scans = 87500; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_HC3.mzML: Scans = 93481; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_8.mzML: Scans = 89628; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML: Scans = 93891; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_1.mzML: Scans = 90834; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS2.mzML: Scans = 92651; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS10.mzML: Scans = 95972; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_7.mzML: Scans = 84769; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC16.mzML: Scans = 98013; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_9.mzML: Scans = 90777; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_10.mzML: Scans = 91079; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC9.mzML: Scans = 97575; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS3.mzML: Scans = 94357; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS20.mzML: Scans = 97008; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS11.mzML: Scans = 96977; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_8_20210401021911.mzML: Scans = 87256; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_10.mzML: Scans = 86078; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_11.mzML: Scans = 92320; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC17.mzML: Scans = 94816; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG1.mzML: Scans = 98967; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS4.mzML: Scans = 96817; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS21.mzML: Scans = 97180; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS12.mzML: Scans = 95188; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_9.mzML: Scans = 88512; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_1_20210330145706.mzML: Scans = 93540; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_12.mzML: Scans = 89488; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC1_20210513132744.mzML: Scans = 97712; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG2.mzML: Scans = 101956; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS5.mzML: Scans = 94850; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS22.mzML: Scans = 95013; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS13.mzML: Scans = 96031; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC10.mzML: Scans = 90615; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_2_20210330170407.mzML: Scans = 85414; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_13.mzML: Scans = 91061; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC2_20210513153447.mzML: Scans = 95800; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS6.mzML: Scans = 93999; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS23.mzML: Scans = 95692; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG3.mzML: Scans = 96448; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS14.mzML: Scans = 96687; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC11.mzML: Scans = 92784; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_3.mzML: Scans = 87305; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_2.mzML: Scans = 94367; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS7.mzML: Scans = 94337; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC3_20210513174150.mzML: Scans = 96991; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS24.mzML: Scans = 98840; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG4.mzML: Scans = 97294; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS15.mzML: Scans = 96131; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC12.mzML: Scans = 93053; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_4.mzML: Scans = 85388; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_3.mzML: Scans = 92128; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS8.mzML: Scans = 93678; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC4.mzML: Scans = 96281; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS25.mzML: Scans = 98199; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG5.mzML: Scans = 92879; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS16.mzML: Scans = 102238; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC13.mzML: Scans = 92943; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_HC_5.mzML: Scans = 86815; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_4.mzML: Scans = 93850; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_POS3.mzML: Scans = 96715; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC5.mzML: Scans = 99321; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_POS2.mzML: Scans = 92563; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_NEG3.mzML: Scans = 89720; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_POS1.mzML: Scans = 91476; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC14.mzML: Scans = 92074; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_NEG1.mzML: Scans = 92305; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210070_APCA_NEG2.mzML: Scans = 93328; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS26.mzML: Scans = 94109; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS9.mzML: Scans = 94993; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC6.mzML: Scans = 92211; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG6.mzML: Scans = 91383; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS17.mzML: Scans = 97543; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_N_4.mzML: Scans = 87073; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC15.mzML: Scans = 98779; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_5.mzML: Scans = 93488; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS27.mzML: Scans = 94578; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_N_1.mzML: Scans = 89655; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC7.mzML: Scans = 92334; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_NEG7.mzML: Scans = 95686; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS18.mzML: Scans = 95939; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_N_5.mzML: Scans = 86922; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_6.mzML: Scans = 93328; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_N_2.mzML: Scans = 88957; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS28.mzML: Scans = 93665; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_HC8.mzML: Scans = 89800; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS1.mzML: Scans = 96047; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210155_APCA_POS19.mzML: Scans = 92738; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_P_7.mzML: Scans = 91580; ITMS: false; FTMS: true; Isolation sizes = [1.6] F:\PXD031498\20210105_ACPA_N_3.mzML: Scans = 87778; ITMS: false; FTMS: true; Isolation sizes = [1.6] ***********************************FIRST SEARCH************************************ Parameters: num_threads = 15 database_name = F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 20.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = 0 write_calibrated_mzml = 0 write_uncalibrated_mgf = 0 write_mzbin_all = 0 isotope_error = 0/1 mass_offsets = 0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = 0 delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = 1 allow_multiple_variable_mods_on_residue = 0 max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = 0 override_charge = 0 precursor_charge_low = 2 precursor_charge_high = 3 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = 1 track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 minimum_peaks = 15 use_topN_peaks = 150 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.01 intensity_transform = 0 activation_types = all analyzer_types = all group_variable = 0 require_precursor = 1 reuse_dia_fragment_peaks = 0 remove_precursor_peak = 1 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = 1 variable_mod_01 = 15.9949 M 3 variable_mod_02 = 42.0106 [^ 1 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.10 Da. 2611579214 fragments to be searched in 2 slices (38.92 GB total) Operating on slice 1 of 2: Fragment index slice generated in 13.37 s 001. 20210070_APCA_NEG1.mzML 7.1 s | deisotoping 0.3 s [progress: 82533/82533 (100%) - 21233 spectra/s] 3.9s 002. 20210070_APCA_NEG2.mzML 7.2 s | deisotoping 0.1 s [progress: 81316/81316 (100%) - 28353 spectra/s] 2.9s 003. 20210070_APCA_NEG3.mzML 7.3 s | deisotoping 0.1 s [progress: 81871/81871 (100%) - 22856 spectra/s] 3.6s 004. 20210070_APCA_POS1.mzML 7.1 s | deisotoping 0.1 s [progress: 82016/82016 (100%) - 21165 spectra/s] 3.9s 005. 20210070_APCA_POS2.mzML 7.6 s | deisotoping 0.1 s [progress: 85317/85317 (100%) - 21108 spectra/s] 4.0s 006. 20210070_APCA_POS3.mzML 7.6 s | deisotoping 0.1 s [progress: 91526/91526 (100%) - 18852 spectra/s] 4.9s 007. 20210070_HC1.mzML 7.7 s | deisotoping 0.1 s [progress: 86020/86020 (100%) - 20150 spectra/s] 4.3s 008. 20210070_HC2.mzML 6.9 s | deisotoping 0.0 s [progress: 75510/75510 (100%) - 27369 spectra/s] 2.8s 009. 20210070_HC3.mzML 7.5 s | deisotoping 0.1 s [progress: 80781/80781 (100%) - 23544 spectra/s] 3.4s 010. 20210105_ACPA_N_1.mzML 7.4 s | deisotoping 0.1 s [progress: 85604/85604 (100%) - 20889 spectra/s] 4.1s 011. 20210105_ACPA_N_2.mzML 7.4 s | deisotoping 0.1 s [progress: 84582/84582 (100%) - 23141 spectra/s] 3.7s 012. 20210105_ACPA_N_3.mzML 3.2 s | deisotoping 0.1 s [progress: 82881/82881 (100%) - 25408 spectra/s] 3.3s 013. 20210105_ACPA_N_4.mzML 7.3 s | deisotoping 0.1 s [progress: 81627/81627 (100%) - 23791 spectra/s] 3.4s 014. 20210105_ACPA_N_5.mzML 7.1 s | deisotoping 0.1 s [progress: 81692/81692 (100%) - 25284 spectra/s] 3.2s 015. 20210105_ACPA_P_1.mzML 7.7 s | deisotoping 0.1 s [progress: 85097/85097 (100%) - 22057 spectra/s] 3.9s 016. 20210105_ACPA_P_10.mzML 7.3 s | deisotoping 0.1 s [progress: 85360/85360 (100%) - 24930 spectra/s] 3.4s 017. 20210105_ACPA_P_11.mzML 7.7 s | deisotoping 0.1 s [progress: 87567/87567 (100%) - 23080 spectra/s] 3.8s 018. 20210105_ACPA_P_12.mzML 7.3 s | deisotoping 0.1 s [progress: 85599/85599 (100%) - 22187 spectra/s] 3.9s 019. 20210105_ACPA_P_13.mzML 7.6 s | deisotoping 0.1 s [progress: 86495/86495 (100%) - 23717 spectra/s] 3.6s 020. 20210105_ACPA_P_2.mzML 7.7 s | deisotoping 0.1 s [progress: 89014/89014 (100%) - 20639 spectra/s] 4.3s 021. 20210105_ACPA_P_3.mzML 7.8 s | deisotoping 0.1 s [progress: 87668/87668 (100%) - 19387 spectra/s] 4.5s 022. 20210105_ACPA_P_4.mzML 7.7 s | deisotoping 0.1 s [progress: 88984/88984 (100%) - 20660 spectra/s] 4.3s 023. 20210105_ACPA_P_5.mzML 7.4 s | deisotoping 0.1 s [progress: 84488/84488 (100%) - 33198 spectra/s] 2.5s 024. 20210105_ACPA_P_6.mzML 7.6 s | deisotoping 0.1 s [progress: 88080/88080 (100%) - 20446 spectra/s] 4.3s 025. 20210105_ACPA_P_7.mzML 7.3 s | deisotoping 0.1 s [progress: 85586/85586 (100%) - 24204 spectra/s] 3.5s 026. 20210105_ACPA_P_8.mzML 7.4 s | deisotoping 0.1 s [progress: 85188/85188 (100%) - 22705 spectra/s] 3.8s 027. 20210105_ACPA_P_9.mzML 7.6 s | deisotoping 0.1 s [progress: 85879/85879 (100%) - 24315 spectra/s] 3.5s 028. 20210105_HC_10.mzML 6.5 s | deisotoping 0.1 s [progress: 79594/79594 (100%) - 24612 spectra/s] 3.2s 029. 20210105_HC_1_20210330145706.mzML 7.7 s | deisotoping 0.2 s [progress: 87396/87396 (100%) - 19229 spectra/s] 4.5s 030. 20210105_HC_2_20210330170407.mzML 7.0 s | deisotoping 0.1 s [progress: 80303/80303 (100%) - 20066 spectra/s] 4.0s 031. 20210105_HC_3.mzML 7.4 s | deisotoping 0.1 s [progress: 79370/79370 (100%) - 24022 spectra/s] 3.3s 032. 20210105_HC_4.mzML 6.9 s | deisotoping 0.1 s [progress: 78383/78383 (100%) - 22173 spectra/s] 3.5s 033. 20210105_HC_5.mzML 7.2 s | deisotoping 0.1 s [progress: 79609/79609 (100%) - 22597 spectra/s] 3.5s 034. 20210105_HC_6.mzML 6.8 s | deisotoping 0.1 s [progress: 79926/79926 (100%) - 25047 spectra/s] 3.2s 035. 20210105_HC_7.mzML 6.6 s | deisotoping 0.1 s [progress: 76442/76442 (100%) - 28727 spectra/s] 2.7s 036. 20210105_HC_8_20210401021911.mzML 6.3 s | deisotoping 0.1 s [progress: 76391/76391 (100%) - 31553 spectra/s] 2.4s 037. 20210105_HC_9.mzML 6.6 s | deisotoping 0.1 s [progress: 80314/80314 (100%) - 25043 spectra/s] 3.2s 038. 20210155_APCA_NEG1.mzML 7.2 s | deisotoping 0.1 s [progress: 93072/93072 (100%) - 25618 spectra/s] 3.6s 039. 20210155_APCA_NEG2.mzML 7.7 s | deisotoping 0.1 s [progress: 97679/97679 (100%) - 23268 spectra/s] 4.2s 040. 20210155_APCA_NEG3.mzML 7.3 s | deisotoping 0.1 s [progress: 92344/92344 (100%) - 21430 spectra/s] 4.3s 041. 20210155_APCA_NEG4.mzML 7.8 s | deisotoping 0.1 s [progress: 93322/93322 (100%) - 21678 spectra/s] 4.3s 042. 20210155_APCA_NEG5.mzML 7.1 s | deisotoping 0.1 s [progress: 88150/88150 (100%) - 22210 spectra/s] 4.0s 043. 20210155_APCA_NEG6.mzML 7.5 s | deisotoping 0.1 s [progress: 87641/87641 (100%) - 20803 spectra/s] 4.2s 044. 20210155_APCA_NEG7.mzML 7.4 s | deisotoping 0.1 s [progress: 91314/91314 (100%) - 23030 spectra/s] 4.0s 045. 20210155_APCA_POS1.mzML 7.5 s | deisotoping 0.1 s [progress: 89358/89358 (100%) - 21210 spectra/s] 4.2s 046. 20210155_APCA_POS10.mzML 7.5 s | deisotoping 0.1 s [progress: 89377/89377 (100%) - 22502 spectra/s] 4.0s 047. 20210155_APCA_POS11.mzML 7.6 s | deisotoping 0.1 s [progress: 91671/91671 (100%) - 20815 spectra/s] 4.4s 048. 20210155_APCA_POS12.mzML 7.3 s | deisotoping 0.1 s [progress: 88816/88816 (100%) - 21689 spectra/s] 4.1s 049. 20210155_APCA_POS13.mzML 7.8 s | deisotoping 0.1 s [progress: 90523/90523 (100%) - 20211 spectra/s] 4.5s 050. 20210155_APCA_POS14.mzML 7.3 s | deisotoping 0.1 s [progress: 89672/89672 (100%) - 22011 spectra/s] 4.1s 051. 20210155_APCA_POS15.mzML 7.7 s | deisotoping 0.1 s [progress: 90609/90609 (100%) - 21038 spectra/s] 4.3s 052. 20210155_APCA_POS16.mzML 7.7 s | deisotoping 0.1 s [progress: 96371/96371 (100%) - 24666 spectra/s] 3.9s 053. 20210155_APCA_POS17.mzML 7.8 s | deisotoping 0.1 s [progress: 92161/92161 (100%) - 20865 spectra/s] 4.4s 054. 20210155_APCA_POS18.mzML 7.5 s | deisotoping 0.1 s [progress: 89743/89743 (100%) - 21383 spectra/s] 4.2s 055. 20210155_APCA_POS19.mzML 7.4 s | deisotoping 0.1 s [progress: 86160/86160 (100%) - 22269 spectra/s] 3.9s 056. 20210155_APCA_POS2.mzML 7.2 s | deisotoping 0.1 s [progress: 86029/86029 (100%) - 21703 spectra/s] 4.0s 057. 20210155_APCA_POS20.mzML 7.7 s | deisotoping 0.1 s [progress: 91076/91076 (100%) - 21122 spectra/s] 4.3s 058. 20210155_APCA_POS21.mzML 7.5 s | deisotoping 0.1 s [progress: 91041/91041 (100%) - 20523 spectra/s] 4.4s 059. 20210155_APCA_POS22.mzML 7.6 s | deisotoping 0.1 s [progress: 88780/88780 (100%) - 21088 spectra/s] 4.2s 060. 20210155_APCA_POS23.mzML 7.3 s | deisotoping 0.1 s [progress: 87351/87351 (100%) - 23244 spectra/s] 3.8s 061. 20210155_APCA_POS24.mzML 7.8 s | deisotoping 0.1 s [progress: 93021/93021 (100%) - 20557 spectra/s] 4.5s 062. 20210155_APCA_POS25.mzML 7.4 s | deisotoping 0.1 s [progress: 90753/90753 (100%) - 21032 spectra/s] 4.3s 063. 20210155_APCA_POS26.mzML 7.6 s | deisotoping 0.1 s [progress: 85372/85372 (100%) - 24205 spectra/s] 3.5s 064. 20210155_APCA_POS27.mzML 7.3 s | deisotoping 0.1 s [progress: 85349/85349 (100%) - 24753 spectra/s] 3.4s 065. 20210155_APCA_POS28.mzML 7.5 s | deisotoping 0.1 s [progress: 86982/86982 (100%) - 21937 spectra/s] 4.0s 066. 20210155_APCA_POS29_20210519114001.mzML 7.4 s | deisotoping 0.1 s [progress: 86906/86906 (100%) - 22673 spectra/s] 3.8s 067. 20210155_APCA_POS3.mzML 7.5 s | deisotoping 0.1 s [progress: 88211/88211 (100%) - 22735 spectra/s] 3.9s 068. 20210155_APCA_POS4.mzML 7.3 s | deisotoping 0.1 s [progress: 91042/91042 (100%) - 22863 spectra/s] 4.0s 069. 20210155_APCA_POS5.mzML 7.6 s | deisotoping 0.1 s [progress: 87425/87425 (100%) - 22567 spectra/s] 3.9s 070. 20210155_APCA_POS6.mzML 7.5 s | deisotoping 0.1 s [progress: 87745/87745 (100%) - 21354 spectra/s] 4.1s 071. 20210155_APCA_POS7.mzML 7.7 s | deisotoping 0.1 s [progress: 87343/87343 (100%) - 21874 spectra/s] 4.0s 072. 20210155_APCA_POS8.mzML 7.5 s | deisotoping 0.1 s [progress: 87710/87710 (100%) - 21556 spectra/s] 4.1s 073. 20210155_APCA_POS9.mzML 7.8 s | deisotoping 0.1 s [progress: 88712/88712 (100%) - 19766 spectra/s] 4.5s 074. 20210155_HC10.mzML 7.2 s | deisotoping 0.1 s [progress: 83781/83781 (100%) - 20570 spectra/s] 4.1s 075. 20210155_HC11.mzML 7.5 s | deisotoping 0.1 s [progress: 85558/85558 (100%) - 22444 spectra/s] 3.8s 076. 20210155_HC12.mzML 7.3 s | deisotoping 0.1 s [progress: 85912/85912 (100%) - 22934 spectra/s] 3.7s 077. 20210155_HC13.mzML 7.3 s | deisotoping 0.1 s [progress: 81330/81330 (100%) - 28378 spectra/s] 2.9s 078. 20210155_HC14.mzML 7.4 s | deisotoping 0.1 s [progress: 84184/84184 (100%) - 22401 spectra/s] 3.8s 079. 20210155_HC15.mzML 7.9 s | deisotoping 0.1 s [progress: 91637/91637 (100%) - 20798 spectra/s] 4.4s 080. 20210155_HC16.mzML 7.7 s | deisotoping 0.1 s [progress: 91187/91187 (100%) - 22860 spectra/s] 4.0s 081. 20210155_HC17.mzML 7.9 s | deisotoping 0.1 s [progress: 86937/86937 (100%) - 20734 spectra/s] 4.2s 082. 20210155_HC1_20210513132744.mzML 7.7 s | deisotoping 0.1 s [progress: 88884/88884 (100%) - 23932 spectra/s] 3.7s 083. 20210155_HC2_20210513153447.mzML 7.8 s | deisotoping 0.1 s [progress: 87069/87069 (100%) - 22557 spectra/s] 3.9s 084. 20210155_HC3_20210513174150.mzML 7.5 s | deisotoping 0.1 s [progress: 87918/87918 (100%) - 23995 spectra/s] 3.7s 085. 20210155_HC4.mzML 7.7 s | deisotoping 0.1 s [progress: 88972/88972 (100%) - 23682 spectra/s] 3.8s 086. 20210155_HC5.mzML 7.9 s | deisotoping 0.1 s [progress: 92286/92286 (100%) - 23921 spectra/s] 3.9s 087. 20210155_HC6.mzML 7.6 s | deisotoping 0.1 s [progress: 86275/86275 (100%) - 21292 spectra/s] 4.1s 088. 20210155_HC7.mzML 7.6 s | deisotoping 0.1 s [progress: 87041/87041 (100%) - 21183 spectra/s] 4.1s 089. 20210155_HC8.mzML 7.4 s | deisotoping 0.1 s [progress: 82713/82713 (100%) - 23471 spectra/s] 3.5s 090. 20210155_HC9.mzML 7.6 s | deisotoping 0.1 s [progress: 90811/90811 (100%) - 21642 spectra/s] 4.2s Operating on slice 2 of 2: Fragment index slice generated in 13.52 s 001. 20210070_APCA_NEG1.mzML 7.2 s | deisotoping 0.1 s [progress: 82533/82533 (100%) - 62572 spectra/s] 1.3s | postprocessing 0.6 s 002. 20210070_APCA_NEG2.mzML 7.0 s | deisotoping 0.1 s [progress: 81316/81316 (100%) - 71897 spectra/s] 1.1s | postprocessing 0.4 s 003. 20210070_APCA_NEG3.mzML 6.9 s | deisotoping 0.1 s [progress: 81871/81871 (100%) - 61977 spectra/s] 1.3s | postprocessing 0.5 s 004. 20210070_APCA_POS1.mzML 6.9 s | deisotoping 0.1 s [progress: 82016/82016 (100%) - 61527 spectra/s] 1.3s | postprocessing 0.5 s 005. 20210070_APCA_POS2.mzML 7.1 s | deisotoping 0.1 s [progress: 85317/85317 (100%) - 55114 spectra/s] 1.5s | postprocessing 0.5 s 006. 20210070_APCA_POS3.mzML 7.6 s | deisotoping 0.1 s [progress: 91526/91526 (100%) - 48426 spectra/s] 1.9s | postprocessing 0.5 s 007. 20210070_HC1.mzML 7.3 s | deisotoping 0.1 s [progress: 86020/86020 (100%) - 55712 spectra/s] 1.5s | postprocessing 0.5 s 008. 20210070_HC2.mzML 7.1 s | deisotoping 0.1 s [progress: 75510/75510 (100%) - 75966 spectra/s] 1.0s | postprocessing 0.4 s 009. 20210070_HC3.mzML 7.0 s | deisotoping 0.1 s [progress: 80781/80781 (100%) - 66706 spectra/s] 1.2s | postprocessing 0.5 s 010. 20210105_ACPA_N_1.mzML 7.3 s | deisotoping 0.1 s [progress: 85604/85604 (100%) - 48583 spectra/s] 1.8s | postprocessing 0.6 s 011. 20210105_ACPA_N_2.mzML 7.1 s | deisotoping 0.1 s [progress: 84582/84582 (100%) - 50287 spectra/s] 1.7s | postprocessing 0.5 s 012. 20210105_ACPA_N_3.mzML 7.1 s | deisotoping 0.1 s [progress: 82881/82881 (100%) - 54635 spectra/s] 1.5s | postprocessing 0.4 s 013. 20210105_ACPA_N_4.mzML 7.0 s | deisotoping 0.1 s [progress: 81627/81627 (100%) - 56101 spectra/s] 1.5s | postprocessing 0.4 s 014. 20210105_ACPA_N_5.mzML 6.9 s | deisotoping 0.1 s [progress: 81692/81692 (100%) - 54570 spectra/s] 1.5s | postprocessing 0.4 s 015. 20210105_ACPA_P_1.mzML 7.2 s | deisotoping 0.1 s [progress: 85097/85097 (100%) - 46123 spectra/s] 1.8s | postprocessing 0.6 s 016. 20210105_ACPA_P_10.mzML 7.4 s | deisotoping 0.1 s [progress: 85360/85360 (100%) - 55357 spectra/s] 1.5s | postprocessing 0.6 s 017. 20210105_ACPA_P_11.mzML 7.1 s | deisotoping 0.1 s [progress: 87567/87567 (100%) - 51999 spectra/s] 1.7s | postprocessing 0.5 s 018. 20210105_ACPA_P_12.mzML 7.3 s | deisotoping 0.1 s [progress: 85599/85599 (100%) - 48334 spectra/s] 1.8s | postprocessing 0.5 s 019. 20210105_ACPA_P_13.mzML 7.2 s | deisotoping 0.1 s [progress: 86495/86495 (100%) - 51980 spectra/s] 1.7s | postprocessing 0.5 s 020. 20210105_ACPA_P_2.mzML 7.6 s | deisotoping 0.1 s [progress: 89014/89014 (100%) - 43958 spectra/s] 2.0s | postprocessing 0.5 s 021. 20210105_ACPA_P_3.mzML 7.7 s | deisotoping 0.1 s [progress: 87668/87668 (100%) - 42007 spectra/s] 2.1s | postprocessing 0.4 s 022. 20210105_ACPA_P_4.mzML 7.7 s | deisotoping 0.1 s [progress: 88984/88984 (100%) - 47408 spectra/s] 1.9s | postprocessing 0.5 s 023. 20210105_ACPA_P_5.mzML 7.2 s | deisotoping 0.1 s [progress: 84488/84488 (100%) - 59457 spectra/s] 1.4s | postprocessing 0.4 s 024. 20210105_ACPA_P_6.mzML 7.5 s | deisotoping 0.1 s [progress: 88080/88080 (100%) - 43604 spectra/s] 2.0s | postprocessing 0.5 s 025. 20210105_ACPA_P_7.mzML 7.2 s | deisotoping 0.1 s [progress: 85586/85586 (100%) - 55288 spectra/s] 1.5s | postprocessing 0.4 s 026. 20210105_ACPA_P_8.mzML 7.3 s | deisotoping 0.1 s [progress: 85188/85188 (100%) - 51380 spectra/s] 1.7s | postprocessing 0.5 s 027. 20210105_ACPA_P_9.mzML 7.2 s | deisotoping 0.1 s [progress: 85879/85879 (100%) - 51332 spectra/s] 1.7s | postprocessing 0.5 s 028. 20210105_HC_10.mzML 6.5 s | deisotoping 0.1 s [progress: 79594/79594 (100%) - 55777 spectra/s] 1.4s | postprocessing 0.4 s 029. 20210105_HC_1_20210330145706.mzML 7.7 s | deisotoping 0.3 s [progress: 87396/87396 (100%) - 44162 spectra/s] 2.0s | postprocessing 0.4 s 030. 20210105_HC_2_20210330170407.mzML 7.0 s | deisotoping 0.1 s [progress: 80303/80303 (100%) - 46552 spectra/s] 1.7s | postprocessing 0.4 s 031. 20210105_HC_3.mzML 6.8 s | deisotoping 0.1 s [progress: 79370/79370 (100%) - 51273 spectra/s] 1.5s | postprocessing 0.4 s 032. 20210105_HC_4.mzML 6.8 s | deisotoping 0.1 s [progress: 78383/78383 (100%) - 50865 spectra/s] 1.5s | postprocessing 0.4 s 033. 20210105_HC_5.mzML 6.8 s | deisotoping 0.1 s [progress: 79609/79609 (100%) - 47162 spectra/s] 1.7s | postprocessing 0.6 s 034. 20210105_HC_6.mzML 6.7 s | deisotoping 0.1 s [progress: 79926/79926 (100%) - 55853 spectra/s] 1.4s | postprocessing 0.5 s 035. 20210105_HC_7.mzML 6.3 s | deisotoping 0.1 s [progress: 76442/76442 (100%) - 59488 spectra/s] 1.3s | postprocessing 0.4 s 036. 20210105_HC_8_20210401021911.mzML 6.3 s | deisotoping 0.1 s [progress: 76391/76391 (100%) - 69446 spectra/s] 1.1s | postprocessing 0.4 s 037. 20210105_HC_9.mzML 6.5 s | deisotoping 0.1 s [progress: 80314/80314 (100%) - 54934 spectra/s] 1.5s | postprocessing 0.4 s 038. 20210155_APCA_NEG1.mzML 7.0 s | deisotoping 0.1 s [progress: 93072/93072 (100%) - 63014 spectra/s] 1.5s | postprocessing 0.5 s 039. 20210155_APCA_NEG2.mzML 7.4 s | deisotoping 0.1 s [progress: 97679/97679 (100%) - 58985 spectra/s] 1.7s | postprocessing 0.6 s 040. 20210155_APCA_NEG3.mzML 7.4 s | deisotoping 0.1 s [progress: 92344/92344 (100%) - 55763 spectra/s] 1.7s | postprocessing 0.5 s 041. 20210155_APCA_NEG4.mzML 7.2 s | deisotoping 0.2 s [progress: 93322/93322 (100%) - 56184 spectra/s] 1.7s | postprocessing 0.5 s 042. 20210155_APCA_NEG5.mzML 7.0 s | deisotoping 0.1 s [progress: 88150/88150 (100%) - 52501 spectra/s] 1.7s | postprocessing 0.5 s 043. 20210155_APCA_NEG6.mzML 7.1 s | deisotoping 0.1 s [progress: 87641/87641 (100%) - 49292 spectra/s] 1.8s | postprocessing 0.5 s 044. 20210155_APCA_NEG7.mzML 7.4 s | deisotoping 0.1 s [progress: 91314/91314 (100%) - 55443 spectra/s] 1.6s | postprocessing 0.5 s 045. 20210155_APCA_POS1.mzML 7.2 s | deisotoping 0.1 s [progress: 89358/89358 (100%) - 53380 spectra/s] 1.7s | postprocessing 0.5 s 046. 20210155_APCA_POS10.mzML 7.3 s | deisotoping 0.1 s [progress: 89377/89377 (100%) - 52637 spectra/s] 1.7s | postprocessing 0.5 s 047. 20210155_APCA_POS11.mzML 7.2 s | deisotoping 0.1 s [progress: 91671/91671 (100%) - 47326 spectra/s] 1.9s | postprocessing 0.5 s 048. 20210155_APCA_POS12.mzML 7.3 s | deisotoping 0.1 s [progress: 88816/88816 (100%) - 57748 spectra/s] 1.5s | postprocessing 0.6 s 049. 20210155_APCA_POS13.mzML 7.3 s | deisotoping 0.1 s [progress: 90523/90523 (100%) - 54631 spectra/s] 1.7s | postprocessing 0.5 s 050. 20210155_APCA_POS14.mzML 7.4 s | deisotoping 0.2 s [progress: 89672/89672 (100%) - 57482 spectra/s] 1.6s | postprocessing 0.4 s 051. 20210155_APCA_POS15.mzML 7.2 s | deisotoping 0.1 s [progress: 90609/90609 (100%) - 50705 spectra/s] 1.8s | postprocessing 0.5 s 052. 20210155_APCA_POS16.mzML 7.6 s | deisotoping 0.1 s [progress: 96371/96371 (100%) - 53748 spectra/s] 1.8s | postprocessing 0.5 s 053. 20210155_APCA_POS17.mzML 7.4 s | deisotoping 0.1 s [progress: 92161/92161 (100%) - 55754 spectra/s] 1.7s | postprocessing 0.5 s 054. 20210155_APCA_POS18.mzML 7.4 s | deisotoping 0.1 s [progress: 89743/89743 (100%) - 51136 spectra/s] 1.8s | postprocessing 0.5 s 055. 20210155_APCA_POS19.mzML 7.0 s | deisotoping 0.1 s [progress: 86160/86160 (100%) - 59750 spectra/s] 1.4s | postprocessing 0.4 s 056. 20210155_APCA_POS2.mzML 7.0 s | deisotoping 0.2 s [progress: 86029/86029 (100%) - 55574 spectra/s] 1.5s | postprocessing 0.4 s 057. 20210155_APCA_POS20.mzML 7.3 s | deisotoping 0.1 s [progress: 91076/91076 (100%) - 54865 spectra/s] 1.7s | postprocessing 0.5 s 058. 20210155_APCA_POS21.mzML 7.5 s | deisotoping 0.1 s [progress: 91041/91041 (100%) - 50438 spectra/s] 1.8s | postprocessing 0.5 s 059. 20210155_APCA_POS22.mzML 7.2 s | deisotoping 0.1 s [progress: 88780/88780 (100%) - 56910 spectra/s] 1.6s | postprocessing 0.5 s 060. 20210155_APCA_POS23.mzML 7.2 s | deisotoping 0.1 s [progress: 87351/87351 (100%) - 61127 spectra/s] 1.4s | postprocessing 0.5 s 061. 20210155_APCA_POS24.mzML 7.3 s | deisotoping 0.2 s [progress: 93021/93021 (100%) - 56376 spectra/s] 1.7s | postprocessing 0.5 s 062. 20210155_APCA_POS25.mzML 7.5 s | deisotoping 0.1 s [progress: 90753/90753 (100%) - 52067 spectra/s] 1.7s | postprocessing 0.5 s 063. 20210155_APCA_POS26.mzML 7.0 s | deisotoping 0.1 s [progress: 85372/85372 (100%) - 58715 spectra/s] 1.5s | postprocessing 0.4 s 064. 20210155_APCA_POS27.mzML 7.0 s | deisotoping 0.1 s [progress: 85349/85349 (100%) - 64028 spectra/s] 1.3s | postprocessing 0.4 s 065. 20210155_APCA_POS28.mzML 7.1 s | deisotoping 0.2 s [progress: 86982/86982 (100%) - 60404 spectra/s] 1.4s | postprocessing 0.5 s 066. 20210155_APCA_POS29_20210519114001.mzML 7.2 s | deisotoping 0.1 s [progress: 86906/86906 (100%) - 55960 spectra/s] 1.6s | postprocessing 0.5 s 067. 20210155_APCA_POS3.mzML 7.2 s | deisotoping 0.1 s [progress: 88211/88211 (100%) - 52916 spectra/s] 1.7s | postprocessing 0.5 s 068. 20210155_APCA_POS4.mzML 7.4 s | deisotoping 0.1 s [progress: 91042/91042 (100%) - 59427 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s [progress: 85912/85912 (100%) - 50986 spectra/s] 1.7s | postprocessing 0.4 s 077. 20210155_HC13.mzML 6.8 s | deisotoping 0.1 s [progress: 81330/81330 (100%) - 67438 spectra/s] 1.2s | postprocessing 0.4 s 078. 20210155_HC14.mzML 7.1 s | deisotoping 0.1 s [progress: 84184/84184 (100%) - 54629 spectra/s] 1.5s | postprocessing 0.4 s 079. 20210155_HC15.mzML 7.6 s | deisotoping 0.1 s [progress: 91637/91637 (100%) - 51743 spectra/s] 1.8s | postprocessing 0.5 s 080. 20210155_HC16.mzML 7.5 s | deisotoping 0.1 s [progress: 91187/91187 (100%) - 51606 spectra/s] 1.8s | postprocessing 0.5 s 081. 20210155_HC17.mzML 7.4 s | deisotoping 0.1 s [progress: 86937/86937 (100%) - 52498 spectra/s] 1.7s | postprocessing 0.5 s 082. 20210155_HC1_20210513132744.mzML 7.6 s | deisotoping 0.1 s [progress: 88884/88884 (100%) - 53902 spectra/s] 1.6s | postprocessing 0.5 s 083. 20210155_HC2_20210513153447.mzML 7.4 s | deisotoping 0.1 s [progress: 87069/87069 (100%) - 52737 spectra/s] 1.7s | postprocessing 0.5 s 084. 20210155_HC3_20210513174150.mzML 7.6 s | deisotoping 0.1 s [progress: 87918/87918 (100%) - 54237 spectra/s] 1.6s | postprocessing 0.5 s 085. 20210155_HC4.mzML 7.4 s | deisotoping 0.1 s [progress: 88972/88972 (100%) - 51879 spectra/s] 1.7s | postprocessing 0.4 s 086. 20210155_HC5.mzML 7.6 s | deisotoping 0.1 s [progress: 92286/92286 (100%) - 55829 spectra/s] 1.7s | postprocessing 0.5 s 087. 20210155_HC6.mzML 7.1 s | deisotoping 0.1 s [progress: 86275/86275 (100%) - 52067 spectra/s] 1.7s | postprocessing 0.5 s 088. 20210155_HC7.mzML 7.5 s | deisotoping 0.1 s [progress: 87041/87041 (100%) - 49709 spectra/s] 1.8s | postprocessing 0.5 s 089. 20210155_HC8.mzML 7.0 s | deisotoping 0.1 s [progress: 82713/82713 (100%) - 57600 spectra/s] 1.4s | postprocessing 0.4 s 090. 20210155_HC9.mzML 7.7 s | deisotoping 0.2 s [progress: 90811/90811 (100%) - 51422 spectra/s] 1.8s | postprocessing 0.6 s ***************************FIRST SEARCH DONE IN 55.430 MIN************************** *********************MASS CALIBRATION AND PARAMETER OPTIMIZATION******************* -----|---------------|---------------|---------------|--------------- | MS1 (Old) | MS1 (New) | MS2 (Old) | MS2 (New) -----|---------------|---------------|---------------|--------------- Run | Median MAD | Median MAD | Median MAD | Median MAD 001 | -0.62 1.47 | 0.02 0.77 | -0.63 3.08 | -0.02 3.00 002 | -0.56 1.33 | 0.08 0.78 | -0.59 3.14 | 0.01 3.02 003 | -0.98 1.42 | -0.06 0.81 | -0.90 2.99 | -0.03 2.89 004 | -1.15 1.44 | 0.04 0.78 | -1.03 3.04 | 0.08 2.94 005 | -1.83 1.48 | -0.07 0.79 | -1.65 3.12 | -0.07 3.01 006 | -1.55 1.65 | -0.02 0.90 | -1.39 2.98 | -0.09 2.86 007 | 0.55 1.56 | 0.06 0.82 | 0.57 3.01 | 0.15 2.91 008 | 1.21 1.39 | 0.09 0.80 | 1.03 3.12 | 0.08 2.99 009 | 0.27 1.44 | 0.02 0.74 | 0.29 3.09 | 0.04 2.96 010 | 0.60 1.71 | 0.04 0.92 | 0.64 3.14 | 0.15 3.01 011 | 0.70 1.70 | 0.06 0.87 | 0.74 3.22 | 0.01 3.08 012 | 0.58 1.61 | 0.06 0.85 | 0.62 3.23 | -0.08 3.11 013 | 0.38 1.73 | 0.04 0.83 | 0.41 3.29 | -0.01 3.19 014 | 0.40 1.61 | 0.05 0.84 | 0.50 3.25 | 0.14 3.16 015 | -0.84 1.87 | -0.04 0.82 | -0.72 3.10 | 0.13 2.96 016 | 0.73 1.72 | -0.08 0.84 | 0.70 3.24 | 0.02 3.14 017 | 0.24 1.71 | 0.05 0.89 | 0.36 3.28 | 0.11 3.16 018 | 0.43 1.76 | 0.02 0.87 | 0.40 3.17 | -0.01 3.05 019 | 0.68 1.86 | -0.07 0.87 | 0.67 3.31 | 0.15 3.18 020 | -0.34 2.19 | 0.04 0.95 | -0.18 3.23 | 0.14 2.94 021 | -0.61 1.84 | 0.04 0.87 | -0.48 3.03 | 0.10 2.94 022 | -1.75 1.75 | -0.17 0.90 | -1.39 3.21 | 0.16 3.05 023 | -1.02 1.74 | -0.15 0.81 | -0.95 3.33 | -0.01 3.20 024 | 0.38 1.86 | 0.03 0.88 | 0.56 3.18 | 0.11 3.07 025 | 0.57 1.75 | 0.01 0.86 | 0.70 3.23 | 0.26 3.12 026 | 0.57 1.76 | -0.00 0.84 | 0.66 3.25 | 0.10 3.10 027 | 0.96 1.74 | 0.02 0.82 | 1.09 3.17 | 0.21 3.05 028 | 3.00 1.91 | 0.22 0.86 | 2.77 3.20 | 0.37 2.98 029 | 3.42 2.05 | 0.14 0.94 | 3.25 3.15 | 0.26 2.91 030 | 3.30 1.91 | 0.10 0.85 | 3.07 3.22 | 0.21 2.97 031 | 2.56 1.73 | 0.13 0.83 | 2.26 3.27 | 0.14 3.04 032 | 2.98 1.84 | 0.23 0.81 | 2.79 3.15 | 0.19 2.94 033 | 2.55 1.78 | 0.05 0.82 | 2.35 3.16 | 0.20 2.93 034 | 2.18 1.92 | 0.17 0.83 | 1.93 3.21 | 0.21 3.00 035 | 2.48 1.70 | 0.18 0.84 | 2.08 3.32 | 0.17 3.12 036 | 2.73 1.72 | 0.08 0.85 | 2.35 3.37 | 0.10 3.13 037 | 2.46 1.71 | 0.09 0.91 | 2.23 3.30 | 0.05 3.08 038 | -0.64 1.45 | 0.10 0.76 | -0.72 3.10 | 0.03 3.01 039 | -0.19 1.51 | 0.05 0.81 | -0.27 3.10 | 0.06 2.98 040 | 0.26 1.51 | -0.03 0.81 | 0.19 2.97 | 0.02 2.87 041 | 0.19 1.46 | 0.06 0.80 | 0.12 3.02 | -0.05 2.92 042 | -0.12 1.53 | 0.07 0.79 | -0.17 2.97 | 0.06 2.89 043 | -0.09 1.50 | -0.05 0.77 | -0.19 2.93 | 0.01 2.85 044 | 0.17 1.50 | -0.04 0.75 | 0.16 3.05 | 0.04 2.94 045 | -0.69 1.57 | 0.04 0.85 | -0.63 3.02 | -0.02 2.89 046 | -0.81 1.43 | 0.03 0.84 | -0.75 3.06 | -0.02 2.94 047 | -0.49 1.52 | 0.10 0.81 | -0.37 2.94 | 0.09 2.82 048 | -0.32 1.54 | 0.04 0.81 | -0.27 3.08 | 0.00 2.95 049 | -0.79 1.42 | 0.14 0.80 | -0.67 2.92 | -0.03 2.81 050 | -1.01 1.44 | 0.04 0.82 | -0.89 3.07 | 0.05 2.95 051 | -1.13 1.50 | -0.08 0.92 | -1.10 3.00 | -0.15 2.88 052 | -0.56 1.41 | 0.11 0.78 | -0.62 3.12 | 0.09 3.02 053 | -0.60 1.53 | -0.03 0.81 | -0.53 3.08 | 0.02 2.97 054 | -0.85 1.48 | 0.08 0.79 | -0.75 3.01 | 0.03 2.94 055 | -0.28 1.48 | 0.04 0.85 | -0.25 3.04 | 0.04 2.94 056 | -0.67 1.48 | -0.03 0.85 | -0.66 3.02 | 0.07 2.93 057 | 0.21 1.60 | -0.05 0.88 | 0.18 3.06 | -0.03 2.94 058 | 0.28 1.59 | 0.08 0.79 | 0.33 3.06 | 0.11 2.95 059 | 0.28 1.45 | 0.08 0.81 | 0.30 2.98 | -0.01 2.89 060 | -0.76 1.44 | -0.01 0.81 | -0.70 3.05 | 0.08 2.94 061 | -1.26 1.57 | -0.04 0.86 | -1.04 3.05 | 0.10 2.93 062 | -1.13 1.53 | 0.07 0.83 | -1.01 3.12 | 0.05 3.02 063 | -1.02 1.51 | -0.08 0.80 | -1.04 3.03 | 0.04 2.91 064 | -0.71 1.49 | -0.05 0.81 | -0.79 3.15 | -0.01 3.05 065 | -0.77 1.52 | -0.07 0.79 | -0.63 3.04 | -0.04 2.94 066 | -0.31 1.55 | 0.01 0.81 | -0.13 2.96 | 0.14 2.85 067 | -0.49 1.46 | 0.02 0.84 | -0.52 2.97 | 0.08 2.87 068 | -0.66 1.44 | 0.06 0.84 | -0.67 3.09 | 0.00 2.96 069 | -0.32 1.57 | 0.07 0.77 | -0.33 2.99 | 0.06 2.88 070 | -0.06 1.48 | 0.02 0.80 | 0.01 2.87 | 0.02 2.76 071 | 0.29 1.45 | -0.06 0.79 | 0.26 2.90 | 0.07 2.79 072 | 0.24 1.52 | -0.02 0.80 | 0.30 2.95 | 0.14 2.84 073 | -0.60 1.47 | -0.09 0.84 | -0.38 2.93 | 0.13 2.82 074 | -0.18 1.50 | 0.07 0.76 | -0.18 2.93 | 0.07 2.83 075 | -0.24 1.45 | 0.04 0.85 | -0.35 2.97 | -0.08 2.90 076 | -0.12 1.41 | 0.16 0.77 | -0.25 2.97 | -0.02 2.90 077 | 0.26 1.42 | 0.00 0.79 | 0.07 3.11 | 0.05 3.04 078 | -0.19 1.39 | 0.03 0.84 | -0.20 2.94 | 0.05 2.85 079 | -0.29 1.48 | -0.05 0.85 | -0.41 2.96 | 0.05 2.88 080 | -0.35 1.41 | 0.11 0.81 | -0.39 2.94 | -0.08 2.84 081 | -0.11 1.49 | -0.18 0.86 | -0.05 2.93 | 0.07 2.84 082 | 0.09 1.52 | 0.08 0.78 | -0.01 3.04 | 0.05 2.94 083 | 0.08 1.41 | -0.04 0.76 | -0.04 2.83 | -0.05 2.77 084 | -0.00 1.44 | 0.04 0.83 | -0.20 2.97 | 0.09 2.87 085 | -0.89 1.52 | 0.01 0.78 | -0.82 3.05 | 0.03 2.96 086 | -0.74 1.62 | 0.03 0.79 | -0.80 3.09 | 0.03 2.97 087 | -0.45 1.48 | -0.10 0.74 | -0.43 3.01 | 0.02 2.88 088 | 0.08 1.43 | 0.04 0.83 | -0.02 2.96 | 0.01 2.88 089 | 0.29 1.38 | -0.01 0.73 | 0.20 3.03 | 0.12 2.92 090 | 0.26 1.46 | -0.02 0.82 | 0.12 2.98 | -0.05 2.86 -----|---------------|---------------|---------------|--------------- Finding the optimal parameters: -------|-------|-------|-------|-------|-------|-------|-------|------- MS2 | 5 | 7 | 10 | 15 | 20 | 25 | 30 | 50 -------|-------|-------|-------|-------|-------|-------|-------|------- Count | skip | 10786| 10890| 11113| 11187| 11112| skip rest -------|-------|-------|-------|-------|-------|-------|-------|------- -------|-------|-------|-------|-------|-------|------- Peaks | 300_0 | 200_0 | 175_0 | 150_1 | 125_1 | 100_1 -------|-------|-------|-------|-------|-------|------- Count | 11378| 11464| 11448| skip rest -------|-------|-------|-------|-------|-------|------- -------|------- Int. | 1 -------|------- Count | 11589 -------|------- -------|------- Rm P. | 0 -------|------- Count | 11624 -------|------- New fragment_mass_tolerance = 20.000000 PPM New use_topN_peaks = 200 New minimum_ratio = 0.000000 New intensity_transform = 1 New remove_precursor_peak = 0 ************MASS CALIBRATION AND PARAMETER OPTIMIZATION DONE IN 21.512 MIN********* ************************************MAIN SEARCH************************************ Checking database... Parameters: num_threads = 15 database_name = F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 20.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = 0 write_calibrated_mzml = 0 write_uncalibrated_mgf = 0 write_mzbin_all = 0 isotope_error = 0/1/2 mass_offsets = 0.0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = 0 delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = 1 allow_multiple_variable_mods_on_residue = 0 max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = 1 override_charge = 0 precursor_charge_low = 1 precursor_charge_high = 4 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = 1 track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 minimum_peaks = 15 use_topN_peaks = 200 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.0 intensity_transform = 1 activation_types = all analyzer_types = all group_variable = 0 require_precursor = 1 reuse_dia_fragment_peaks = 0 remove_precursor_peak = 0 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = 1 variable_mod_01 = 15.9949 M 3 variable_mod_02 = 42.0106 [^ 1 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.10 Da. 2611579214 fragments to be searched in 2 slices (38.92 GB total) Operating on slice 1 of 2: Fragment index slice generated in 11.61 s 001. 20210070_APCA_NEG1.mzBIN_calibrated 1.5 s [progress: 82533/82533 (100%) - 18555 spectra/s] 4.4s 002. 20210070_APCA_NEG2.mzBIN_calibrated 1.3 s [progress: 81316/81316 (100%) - 20498 spectra/s] 4.0s 003. 20210070_APCA_NEG3.mzBIN_calibrated 1.7 s [progress: 81871/81871 (100%) - 16856 spectra/s] 4.9s 004. 20210070_APCA_POS1.mzBIN_calibrated 1.8 s [progress: 82016/82016 (100%) - 15787 spectra/s] 5.2s 005. 20210070_APCA_POS2.mzBIN_calibrated 1.9 s [progress: 85317/85317 (100%) - 14866 spectra/s] 5.7s 006. 20210070_APCA_POS3.mzBIN_calibrated 2.2 s [progress: 91526/91526 (100%) - 13162 spectra/s] 7.0s 007. 20210070_HC1.mzBIN_calibrated 2.2 s [progress: 86020/86020 (100%) - 14141 spectra/s] 6.1s 008. 20210070_HC2.mzBIN_calibrated 1.3 s [progress: 75510/75510 (100%) - 19557 spectra/s] 3.9s 009. 20210070_HC3.mzBIN_calibrated 1.5 s [progress: 80781/80781 (100%) - 17402 spectra/s] 4.6s 010. 20210105_ACPA_N_1.mzBIN_calibrated 2.2 s [progress: 85604/85604 (100%) - 14658 spectra/s] 5.8s 011. 20210105_ACPA_N_2.mzBIN_calibrated 1.7 s [progress: 84582/84582 (100%) - 16689 spectra/s] 5.1s 012. 20210105_ACPA_N_3.mzBIN_calibrated 1.6 s [progress: 82881/82881 (100%) - 17874 spectra/s] 4.6s 013. 20210105_ACPA_N_4.mzBIN_calibrated 1.6 s [progress: 81627/81627 (100%) - 17199 spectra/s] 4.7s 014. 20210105_ACPA_N_5.mzBIN_calibrated 1.8 s [progress: 81692/81692 (100%) - 18014 spectra/s] 4.5s 015. 20210105_ACPA_P_1.mzBIN_calibrated 1.8 s [progress: 85097/85097 (100%) - 15759 spectra/s] 5.4s 016. 20210105_ACPA_P_10.mzBIN_calibrated 1.6 s [progress: 85360/85360 (100%) - 18357 spectra/s] 4.7s 017. 20210105_ACPA_P_11.mzBIN_calibrated 1.7 s [progress: 87567/87567 (100%) - 16525 spectra/s] 5.3s 018. 20210105_ACPA_P_12.mzBIN_calibrated 1.8 s [progress: 85599/85599 (100%) - 15828 spectra/s] 5.4s 019. 20210105_ACPA_P_13.mzBIN_calibrated 1.7 s [progress: 86495/86495 (100%) - 16983 spectra/s] 5.1s 020. 20210105_ACPA_P_2.mzBIN_calibrated 2.0 s [progress: 89014/89014 (100%) - 14633 spectra/s] 6.1s 021. 20210105_ACPA_P_3.mzBIN_calibrated 2.2 s [progress: 87668/87668 (100%) - 13209 spectra/s] 6.6s 022. 20210105_ACPA_P_4.mzBIN_calibrated 2.2 s [progress: 88984/88984 (100%) - 14933 spectra/s] 6.0s 023. 20210105_ACPA_P_5.mzBIN_calibrated 1.5 s [progress: 84488/84488 (100%) - 24489 spectra/s] 3.5s 024. 20210105_ACPA_P_6.mzBIN_calibrated 0.5 s [progress: 88080/88080 (100%) - 14186 spectra/s] 6.2s 025. 20210105_ACPA_P_7.mzBIN_calibrated 1.7 s [progress: 85586/85586 (100%) - 17231 spectra/s] 5.0s 026. 20210105_ACPA_P_8.mzBIN_calibrated 1.9 s [progress: 85188/85188 (100%) - 16348 spectra/s] 5.2s 027. 20210105_ACPA_P_9.mzBIN_calibrated 1.8 s [progress: 85879/85879 (100%) - 17234 spectra/s] 5.0s 028. 20210105_HC_10.mzBIN_calibrated 1.4 s [progress: 79594/79594 (100%) - 17443 spectra/s] 4.6s 029. 20210105_HC_1_20210330145706.mzBIN_calibrated 2.0 s [progress: 87396/87396 (100%) - 13204 spectra/s] 6.6s 030. 20210105_HC_2_20210330170407.mzBIN_calibrated 1.8 s [progress: 80303/80303 (100%) - 14248 spectra/s] 5.6s 031. 20210105_HC_3.mzBIN_calibrated 1.6 s [progress: 79370/79370 (100%) - 17583 spectra/s] 4.5s 032. 20210105_HC_4.mzBIN_calibrated 1.7 s [progress: 78383/78383 (100%) - 15819 spectra/s] 5.0s 033. 20210105_HC_5.mzBIN_calibrated 1.6 s [progress: 79609/79609 (100%) - 15976 spectra/s] 5.0s 034. 20210105_HC_6.mzBIN_calibrated 1.6 s [progress: 79926/79926 (100%) - 17360 spectra/s] 4.6s 035. 20210105_HC_7.mzBIN_calibrated 1.3 s [progress: 76442/76442 (100%) - 21024 spectra/s] 3.6s 036. 20210105_HC_8_20210401021911.mzBIN_calibrated 1.2 s [progress: 76391/76391 (100%) - 23932 spectra/s] 3.2s 037. 20210105_HC_9.mzBIN_calibrated 1.5 s [progress: 80314/80314 (100%) - 18187 spectra/s] 4.4s 038. 20210155_APCA_NEG1.mzBIN_calibrated 1.8 s [progress: 93072/93072 (100%) - 17929 spectra/s] 5.2s 039. 20210155_APCA_NEG2.mzBIN_calibrated 1.8 s [progress: 97679/97679 (100%) - 16100 spectra/s] 6.1s 040. 20210155_APCA_NEG3.mzBIN_calibrated 2.0 s [progress: 92344/92344 (100%) - 15206 spectra/s] 6.1s 041. 20210155_APCA_NEG4.mzBIN_calibrated 2.0 s [progress: 93322/93322 (100%) - 15359 spectra/s] 6.1s 042. 20210155_APCA_NEG5.mzBIN_calibrated 1.8 s [progress: 88150/88150 (100%) - 15624 spectra/s] 5.6s 043. 20210155_APCA_NEG6.mzBIN_calibrated 2.1 s [progress: 87641/87641 (100%) - 14410 spectra/s] 6.1s 044. 20210155_APCA_NEG7.mzBIN_calibrated 1.8 s [progress: 91314/91314 (100%) - 16228 spectra/s] 5.6s 045. 20210155_APCA_POS1.mzBIN_calibrated 2.2 s [progress: 89358/89358 (100%) - 15267 spectra/s] 5.9s 046. 20210155_APCA_POS10.mzBIN_calibrated 2.0 s [progress: 89377/89377 (100%) - 15864 spectra/s] 5.6s 047. 20210155_APCA_POS11.mzBIN_calibrated 1.9 s [progress: 91671/91671 (100%) - 14576 spectra/s] 6.3s 048. 20210155_APCA_POS12.mzBIN_calibrated 2.0 s [progress: 88816/88816 (100%) - 15417 spectra/s] 5.8s 049. 20210155_APCA_POS13.mzBIN_calibrated 2.0 s [progress: 90523/90523 (100%) - 14118 spectra/s] 6.4s 050. 20210155_APCA_POS14.mzBIN_calibrated 1.9 s [progress: 89672/89672 (100%) - 15598 spectra/s] 5.7s 051. 20210155_APCA_POS15.mzBIN_calibrated 1.8 s [progress: 90609/90609 (100%) - 14947 spectra/s] 6.1s 052. 20210155_APCA_POS16.mzBIN_calibrated 1.7 s [progress: 96371/96371 (100%) - 18152 spectra/s] 5.3s 053. 20210155_APCA_POS17.mzBIN_calibrated 1.9 s [progress: 92161/92161 (100%) - 14434 spectra/s] 6.4s 054. 20210155_APCA_POS18.mzBIN_calibrated 1.7 s [progress: 89743/89743 (100%) - 15050 spectra/s] 6.0s 055. 20210155_APCA_POS19.mzBIN_calibrated 1.7 s [progress: 86160/86160 (100%) - 16254 spectra/s] 5.3s 056. 20210155_APCA_POS2.mzBIN_calibrated 1.9 s [progress: 86029/86029 (100%) - 15267 spectra/s] 5.6s 057. 20210155_APCA_POS20.mzBIN_calibrated 1.9 s [progress: 91076/91076 (100%) - 15024 spectra/s] 6.1s 058. 20210155_APCA_POS21.mzBIN_calibrated 2.0 s [progress: 91041/91041 (100%) - 14439 spectra/s] 6.3s 059. 20210155_APCA_POS22.mzBIN_calibrated 1.9 s [progress: 88780/88780 (100%) - 14886 spectra/s] 6.0s 060. 20210155_APCA_POS23.mzBIN_calibrated 1.5 s [progress: 87351/87351 (100%) - 16512 spectra/s] 5.3s 061. 20210155_APCA_POS24.mzBIN_calibrated 1.9 s [progress: 93021/93021 (100%) - 14516 spectra/s] 6.4s 062. 20210155_APCA_POS25.mzBIN_calibrated 1.7 s [progress: 90753/90753 (100%) - 14904 spectra/s] 6.1s 063. 20210155_APCA_POS26.mzBIN_calibrated 1.6 s [progress: 85372/85372 (100%) - 17226 spectra/s] 5.0s 064. 20210155_APCA_POS27.mzBIN_calibrated 1.8 s [progress: 85349/85349 (100%) - 17927 spectra/s] 4.8s 065. 20210155_APCA_POS28.mzBIN_calibrated 1.8 s [progress: 86982/86982 (100%) - 15472 spectra/s] 5.6s 066. 20210155_APCA_POS29_20210519114001.mzBIN_calibrated 1.6 s [progress: 86906/86906 (100%) - 16422 spectra/s] 5.3s 067. 20210155_APCA_POS3.mzBIN_calibrated 1.6 s [progress: 88211/88211 (100%) - 15995 spectra/s] 5.5s 068. 20210155_APCA_POS4.mzBIN_calibrated 1.9 s [progress: 91042/91042 (100%) - 16211 spectra/s] 5.6s 069. 20210155_APCA_POS5.mzBIN_calibrated 1.8 s [progress: 87425/87425 (100%) - 15769 spectra/s] 5.5s 070. 20210155_APCA_POS6.mzBIN_calibrated 1.8 s [progress: 87745/87745 (100%) - 15284 spectra/s] 5.7s 071. 20210155_APCA_POS7.mzBIN_calibrated 1.9 s [progress: 87343/87343 (100%) - 14707 spectra/s] 5.9s 072. 20210155_APCA_POS8.mzBIN_calibrated 2.0 s [progress: 87710/87710 (100%) - 14973 spectra/s] 5.9s 073. 20210155_APCA_POS9.mzBIN_calibrated 2.1 s [progress: 88712/88712 (100%) - 14108 spectra/s] 6.3s 074. 20210155_HC10.mzBIN_calibrated 2.0 s [progress: 83781/83781 (100%) - 14067 spectra/s] 6.0s 075. 20210155_HC11.mzBIN_calibrated 1.8 s [progress: 85558/85558 (100%) - 15844 spectra/s] 5.4s 076. 20210155_HC12.mzBIN_calibrated 1.9 s [progress: 85912/85912 (100%) - 16234 spectra/s] 5.3s 077. 20210155_HC13.mzBIN_calibrated 1.2 s [progress: 81330/81330 (100%) - 21097 spectra/s] 3.9s 078. 20210155_HC14.mzBIN_calibrated 1.8 s [progress: 84184/84184 (100%) - 15869 spectra/s] 5.3s 079. 20210155_HC15.mzBIN_calibrated 2.0 s [progress: 91637/91637 (100%) - 14826 spectra/s] 6.2s 080. 20210155_HC16.mzBIN_calibrated 1.9 s [progress: 91187/91187 (100%) - 16202 spectra/s] 5.6s 081. 20210155_HC17.mzBIN_calibrated 1.9 s [progress: 86937/86937 (100%) - 14838 spectra/s] 5.9s 082. 20210155_HC1_20210513132744.mzBIN_calibrated 1.7 s [progress: 88884/88884 (100%) - 17139 spectra/s] 5.2s 083. 20210155_HC2_20210513153447.mzBIN_calibrated 2.0 s [progress: 87069/87069 (100%) - 16127 spectra/s] 5.4s 084. 20210155_HC3_20210513174150.mzBIN_calibrated 0.7 s [progress: 87918/87918 (100%) - 17334 spectra/s] 5.1s 085. 20210155_HC4.mzBIN_calibrated 0.5 s [progress: 88972/88972 (100%) - 17203 spectra/s] 5.2s 086. 20210155_HC5.mzBIN_calibrated 0.5 s [progress: 92286/92286 (100%) - 16712 spectra/s] 5.5s 087. 20210155_HC6.mzBIN_calibrated 0.5 s [progress: 86275/86275 (100%) - 15357 spectra/s] 5.6s 088. 20210155_HC7.mzBIN_calibrated 0.5 s [progress: 87041/87041 (100%) - 14570 spectra/s] 6.0s 089. 20210155_HC8.mzBIN_calibrated 0.5 s [progress: 82713/82713 (100%) - 16683 spectra/s] 5.0s 090. 20210155_HC9.mzBIN_calibrated 0.5 s [progress: 90811/90811 (100%) - 15128 spectra/s] 6.0s Operating on slice 2 of 2: Fragment index slice generated in 13.60 s 001. 20210070_APCA_NEG1.mzBIN_calibrated 0.4 s [progress: 82533/82533 (100%) - 53663 spectra/s] 1.5s | remapping alternative proteins and postprocessing 13.6 s 002. 20210070_APCA_NEG2.mzBIN_calibrated 0.6 s [progress: 81316/81316 (100%) - 50071 spectra/s] 1.6s | remapping alternative proteins and postprocessing 13.3 s 003. 20210070_APCA_NEG3.mzBIN_calibrated 0.4 s [progress: 81871/81871 (100%) - 46151 spectra/s] 1.8s | remapping alternative proteins and postprocessing 13.9 s 004. 20210070_APCA_POS1.mzBIN_calibrated 0.4 s [progress: 82016/82016 (100%) - 47656 spectra/s] 1.7s | remapping alternative proteins and postprocessing 14.1 s 005. 20210070_APCA_POS2.mzBIN_calibrated 0.5 s [progress: 85317/85317 (100%) - 39226 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.5 s 006. 20210070_APCA_POS3.mzBIN_calibrated 0.7 s [progress: 91526/91526 (100%) - 36772 spectra/s] 2.5s | remapping alternative proteins and postprocessing 15.5 s 007. 20210070_HC1.mzBIN_calibrated 0.5 s [progress: 86020/86020 (100%) - 37465 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.3 s 008. 20210070_HC2.mzBIN_calibrated 0.4 s [progress: 75510/75510 (100%) - 48342 spectra/s] 1.6s | remapping alternative proteins and postprocessing 12.9 s 009. 20210070_HC3.mzBIN_calibrated 1.6 s [progress: 80781/80781 (100%) - 46993 spectra/s] 1.7s | remapping alternative proteins and postprocessing 14.0 s 010. 20210105_ACPA_N_1.mzBIN_calibrated 1.9 s [progress: 85604/85604 (100%) - 35055 spectra/s] 2.4s | remapping alternative proteins and postprocessing 14.5 s 011. 20210105_ACPA_N_2.mzBIN_calibrated 2.0 s [progress: 84582/84582 (100%) - 39766 spectra/s] 2.1s | remapping alternative proteins and postprocessing 13.7 s 012. 20210105_ACPA_N_3.mzBIN_calibrated 2.0 s [progress: 82881/82881 (100%) - 44250 spectra/s] 1.9s | remapping alternative proteins and postprocessing 13.1 s 013. 20210105_ACPA_N_4.mzBIN_calibrated 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40156 spectra/s] 2.2s | remapping alternative proteins and postprocessing 13.8 s 020. 20210105_ACPA_P_2.mzBIN_calibrated 2.5 s [progress: 89014/89014 (100%) - 32193 spectra/s] 2.8s | remapping alternative proteins and postprocessing 14.9 s 021. 20210105_ACPA_P_3.mzBIN_calibrated 2.3 s [progress: 87668/87668 (100%) - 32494 spectra/s] 2.7s | remapping alternative proteins and postprocessing 15.0 s 022. 20210105_ACPA_P_4.mzBIN_calibrated 2.3 s [progress: 88984/88984 (100%) - 36084 spectra/s] 2.5s | remapping alternative proteins and postprocessing 14.6 s 023. 20210105_ACPA_P_5.mzBIN_calibrated 1.9 s [progress: 84488/84488 (100%) - 47814 spectra/s] 1.8s | remapping alternative proteins and postprocessing 12.0 s 024. 20210105_ACPA_P_6.mzBIN_calibrated 2.6 s [progress: 88080/88080 (100%) - 35218 spectra/s] 2.5s | remapping alternative proteins and postprocessing 14.2 s 025. 20210105_ACPA_P_7.mzBIN_calibrated 2.1 s [progress: 85586/85586 (100%) - 43182 spectra/s] 2.0s | remapping alternative proteins and postprocessing 13.4 s 026. 20210105_ACPA_P_8.mzBIN_calibrated 1.9 s [progress: 85188/85188 (100%) - 40643 spectra/s] 2.1s | remapping alternative proteins and postprocessing 13.4 s 027. 20210105_ACPA_P_9.mzBIN_calibrated 1.9 s [progress: 85879/85879 (100%) - 42854 spectra/s] 2.0s | remapping alternative proteins and postprocessing 13.4 s 028. 20210105_HC_10.mzBIN_calibrated 1.8 s [progress: 79594/79594 (100%) - 45121 spectra/s] 1.8s | remapping alternative proteins and postprocessing 13.2 s 029. 20210105_HC_1_20210330145706.mzBIN_calibrated 2.0 s [progress: 87396/87396 (100%) - 35759 spectra/s] 2.4s | remapping alternative proteins and postprocessing 15.0 s 030. 20210105_HC_2_20210330170407.mzBIN_calibrated 2.7 s [progress: 80303/80303 (100%) - 35548 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.5 s 031. 20210105_HC_3.mzBIN_calibrated 1.7 s [progress: 79370/79370 (100%) - 39745 spectra/s] 2.0s | remapping alternative proteins and postprocessing 13.6 s 032. 20210105_HC_4.mzBIN_calibrated 1.7 s [progress: 78383/78383 (100%) - 36782 spectra/s] 2.1s | remapping alternative proteins and postprocessing 13.7 s 033. 20210105_HC_5.mzBIN_calibrated 2.0 s [progress: 79609/79609 (100%) - 37837 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.0 s 034. 20210105_HC_6.mzBIN_calibrated 1.5 s [progress: 79926/79926 (100%) - 39353 spectra/s] 2.0s | remapping alternative proteins and postprocessing 13.6 s 035. 20210105_HC_7.mzBIN_calibrated 1.6 s [progress: 76442/76442 (100%) - 45774 spectra/s] 1.7s | remapping alternative proteins and postprocessing 12.8 s 036. 20210105_HC_8_20210401021911.mzBIN_calibrated 1.7 s [progress: 76391/76391 (100%) - 52251 spectra/s] 1.5s | remapping alternative proteins and postprocessing 12.5 s 037. 20210105_HC_9.mzBIN_calibrated 1.5 s [progress: 80314/80314 (100%) - 41378 spectra/s] 1.9s | remapping alternative proteins and postprocessing 13.0 s 038. 20210155_APCA_NEG1.mzBIN_calibrated 2.1 s [progress: 93072/93072 (100%) - 49771 spectra/s] 1.9s | remapping alternative proteins and postprocessing 14.3 s 039. 20210155_APCA_NEG2.mzBIN_calibrated 2.3 s [progress: 97679/97679 (100%) - 44059 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.1 s 040. 20210155_APCA_NEG3.mzBIN_calibrated 2.1 s [progress: 92344/92344 (100%) - 41898 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.0 s 041. 20210155_APCA_NEG4.mzBIN_calibrated 2.0 s [progress: 93322/93322 (100%) - 41093 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.0 s 042. 20210155_APCA_NEG5.mzBIN_calibrated 2.2 s [progress: 88150/88150 (100%) - 42688 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.9 s 043. 20210155_APCA_NEG6.mzBIN_calibrated 2.5 s [progress: 87641/87641 (100%) - 39354 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.9 s 044. 20210155_APCA_NEG7.mzBIN_calibrated 1.8 s [progress: 91314/91314 (100%) - 39140 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.9 s 045. 20210155_APCA_POS1.mzBIN_calibrated 2.1 s [progress: 89358/89358 (100%) - 39910 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.0 s 046. 20210155_APCA_POS10.mzBIN_calibrated 2.1 s [progress: 89377/89377 (100%) - 42581 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.5 s 047. 20210155_APCA_POS11.mzBIN_calibrated 2.2 s [progress: 91671/91671 (100%) - 43160 spectra/s] 2.1s | remapping alternative proteins and postprocessing 15.1 s 048. 20210155_APCA_POS12.mzBIN_calibrated 2.0 s [progress: 88816/88816 (100%) - 41445 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.6 s 049. 20210155_APCA_POS13.mzBIN_calibrated 2.5 s [progress: 90523/90523 (100%) - 41109 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.1 s 050. 20210155_APCA_POS14.mzBIN_calibrated 2.1 s [progress: 89672/89672 (100%) - 42159 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.6 s 051. 20210155_APCA_POS15.mzBIN_calibrated 2.2 s [progress: 90609/90609 (100%) - 39585 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.1 s 052. 20210155_APCA_POS16.mzBIN_calibrated 2.3 s [progress: 96371/96371 (100%) - 40852 spectra/s] 2.4s | remapping alternative proteins and postprocessing 14.6 s 053. 20210155_APCA_POS17.mzBIN_calibrated 2.0 s [progress: 92161/92161 (100%) - 39690 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.5 s 054. 20210155_APCA_POS18.mzBIN_calibrated 2.0 s [progress: 89743/89743 (100%) - 40755 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.7 s 055. 20210155_APCA_POS19.mzBIN_calibrated 2.3 s [progress: 86160/86160 (100%) - 46075 spectra/s] 1.9s | remapping alternative proteins and postprocessing 14.2 s 056. 20210155_APCA_POS2.mzBIN_calibrated 1.9 s [progress: 86029/86029 (100%) - 39391 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.5 s 057. 20210155_APCA_POS20.mzBIN_calibrated 2.0 s [progress: 91076/91076 (100%) - 40677 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.2 s 058. 20210155_APCA_POS21.mzBIN_calibrated 2.2 s [progress: 91041/91041 (100%) - 40991 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.3 s 059. 20210155_APCA_POS22.mzBIN_calibrated 2.4 s [progress: 88780/88780 (100%) - 41447 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.7 s 060. 20210155_APCA_POS23.mzBIN_calibrated 1.7 s [progress: 87351/87351 (100%) - 42882 spectra/s] 2.0s | remapping alternative proteins and postprocessing 14.4 s 061. 20210155_APCA_POS24.mzBIN_calibrated 1.9 s [progress: 93021/93021 (100%) - 39889 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.3 s 062. 20210155_APCA_POS25.mzBIN_calibrated 2.2 s [progress: 90753/90753 (100%) - 41899 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.0 s 063. 20210155_APCA_POS26.mzBIN_calibrated 1.6 s [progress: 85372/85372 (100%) - 40615 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.1 s 064. 20210155_APCA_POS27.mzBIN_calibrated 1.7 s [progress: 85349/85349 (100%) - 48003 spectra/s] 1.8s | remapping alternative proteins and postprocessing 13.8 s 065. 20210155_APCA_POS28.mzBIN_calibrated 1.9 s [progress: 86982/86982 (100%) - 42596 spectra/s] 2.0s | remapping alternative proteins and postprocessing 14.4 s 066. 20210155_APCA_POS29_20210519114001.mzBIN_calibrated 1.7 s [progress: 86906/86906 (100%) - 35676 spectra/s] 2.4s | remapping alternative proteins and postprocessing 14.4 s 067. 20210155_APCA_POS3.mzBIN_calibrated 2.3 s [progress: 88211/88211 (100%) - 42904 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.5 s 068. 20210155_APCA_POS4.mzBIN_calibrated 2.4 s [progress: 91042/91042 (100%) - 42503 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.5 s 069. 20210155_APCA_POS5.mzBIN_calibrated 1.9 s [progress: 87425/87425 (100%) - 43778 spectra/s] 2.0s | remapping alternative proteins and postprocessing 14.7 s 070. 20210155_APCA_POS6.mzBIN_calibrated 1.9 s [progress: 87745/87745 (100%) - 39848 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.6 s 071. 20210155_APCA_POS7.mzBIN_calibrated 2.1 s [progress: 87343/87343 (100%) - 40929 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.8 s 072. 20210155_APCA_POS8.mzBIN_calibrated 1.8 s [progress: 87710/87710 (100%) - 39034 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.9 s 073. 20210155_APCA_POS9.mzBIN_calibrated 2.1 s [progress: 88712/88712 (100%) - 33325 spectra/s] 2.7s | remapping alternative proteins and postprocessing 15.0 s 074. 20210155_HC10.mzBIN_calibrated 1.9 s [progress: 83781/83781 (100%) - 38013 spectra/s] 2.2s | remapping alternative proteins and postprocessing 15.1 s 075. 20210155_HC11.mzBIN_calibrated 1.7 s [progress: 85558/85558 (100%) - 40453 spectra/s] 2.1s | remapping alternative proteins and postprocessing 14.9 s 076. 20210155_HC12.mzBIN_calibrated 2.1 s [progress: 85912/85912 (100%) - 38439 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.4 s 077. 20210155_HC13.mzBIN_calibrated 1.5 s [progress: 81330/81330 (100%) - 51183 spectra/s] 1.6s | remapping alternative proteins and postprocessing 13.2 s 078. 20210155_HC14.mzBIN_calibrated 2.1 s [progress: 84184/84184 (100%) - 42304 spectra/s] 2.0s | remapping alternative proteins and postprocessing 14.3 s 079. 20210155_HC15.mzBIN_calibrated 2.4 s [progress: 91637/91637 (100%) - 34856 spectra/s] 2.6s | remapping alternative proteins and postprocessing 15.3 s 080. 20210155_HC16.mzBIN_calibrated 2.3 s [progress: 91187/91187 (100%) - 39924 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.8 s 081. 20210155_HC17.mzBIN_calibrated 2.2 s [progress: 86937/86937 (100%) - 38332 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.9 s 082. 20210155_HC1_20210513132744.mzBIN_calibrated 1.9 s [progress: 88884/88884 (100%) - 40531 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.6 s 083. 20210155_HC2_20210513153447.mzBIN_calibrated 2.0 s [progress: 87069/87069 (100%) - 38543 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.7 s 084. 20210155_HC3_20210513174150.mzBIN_calibrated 1.8 s [progress: 87918/87918 (100%) - 39355 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.5 s 085. 20210155_HC4.mzBIN_calibrated 2.0 s [progress: 88972/88972 (100%) - 41267 spectra/s] 2.2s | remapping alternative proteins and postprocessing 14.5 s 086. 20210155_HC5.mzBIN_calibrated 2.0 s [progress: 92286/92286 (100%) - 39321 spectra/s] 2.3s | remapping alternative proteins and postprocessing 15.1 s 087. 20210155_HC6.mzBIN_calibrated 1.8 s [progress: 86275/86275 (100%) - 37873 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.7 s 088. 20210155_HC7.mzBIN_calibrated 2.5 s [progress: 87041/87041 (100%) - 37102 spectra/s] 2.3s | remapping alternative proteins and postprocessing 14.9 s 089. 20210155_HC8.mzBIN_calibrated 1.9 s [progress: 82713/82713 (100%) - 34695 spectra/s] 2.4s | remapping alternative proteins and postprocessing 14.1 s 090. 20210155_HC9.mzBIN_calibrated 2.0 s [progress: 90811/90811 (100%) - 35626 spectra/s] 2.5s | remapping alternative proteins and postprocessing 15.3 s ***************************MAIN SEARCH DONE IN 39.374 MIN*************************** *******************************TOTAL TIME 116.316 MIN******************************** Process 'MSFragger' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC1.pepXML F:\testbeijing\HC1\20210070_HC1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC1.pin F:\testbeijing\HC1\20210070_HC1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_6.pepXML F:\testbeijing\HC10\20210105_HC_6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_6.pin F:\testbeijing\HC10\20210105_HC_6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_7.pepXML F:\testbeijing\HC11\20210105_HC_7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_7.pin F:\testbeijing\HC11\20210105_HC_7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_8_20210401021911.pepXML F:\testbeijing\HC12\20210105_HC_8_20210401021911.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_8_20210401021911.pin F:\testbeijing\HC12\20210105_HC_8_20210401021911.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_9.pepXML F:\testbeijing\HC13\20210105_HC_9.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_9.pin F:\testbeijing\HC13\20210105_HC_9.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC10.pepXML F:\testbeijing\HC14\20210155_HC10.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC10.pin F:\testbeijing\HC14\20210155_HC10.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC11.pepXML F:\testbeijing\HC15\20210155_HC11.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC11.pin F:\testbeijing\HC15\20210155_HC11.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC12.pepXML F:\testbeijing\HC16\20210155_HC12.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC12.pin F:\testbeijing\HC16\20210155_HC12.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC13.pepXML F:\testbeijing\HC17\20210155_HC13.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC13.pin F:\testbeijing\HC17\20210155_HC13.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC14.pepXML F:\testbeijing\HC18\20210155_HC14.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC14.pin F:\testbeijing\HC18\20210155_HC14.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC15.pepXML F:\testbeijing\HC19\20210155_HC15.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC15.pin F:\testbeijing\HC19\20210155_HC15.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC2.pepXML F:\testbeijing\HC2\20210070_HC2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC2.pin F:\testbeijing\HC2\20210070_HC2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC16.pepXML F:\testbeijing\HC20\20210155_HC16.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC16.pin F:\testbeijing\HC20\20210155_HC16.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC17.pepXML F:\testbeijing\HC21\20210155_HC17.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC17.pin F:\testbeijing\HC21\20210155_HC17.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC1_20210513132744.pepXML F:\testbeijing\HC22\20210155_HC1_20210513132744.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC1_20210513132744.pin F:\testbeijing\HC22\20210155_HC1_20210513132744.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC2_20210513153447.pepXML F:\testbeijing\HC23\20210155_HC2_20210513153447.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC2_20210513153447.pin F:\testbeijing\HC23\20210155_HC2_20210513153447.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC3_20210513174150.pepXML F:\testbeijing\HC24\20210155_HC3_20210513174150.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC3_20210513174150.pin F:\testbeijing\HC24\20210155_HC3_20210513174150.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC4.pepXML F:\testbeijing\HC25\20210155_HC4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC4.pin F:\testbeijing\HC25\20210155_HC4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC5.pepXML F:\testbeijing\HC26\20210155_HC5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC5.pin F:\testbeijing\HC26\20210155_HC5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC6.pepXML F:\testbeijing\HC27\20210155_HC6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC6.pin F:\testbeijing\HC27\20210155_HC6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC7.pepXML F:\testbeijing\HC28\20210155_HC7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC7.pin F:\testbeijing\HC28\20210155_HC7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC8.pepXML F:\testbeijing\HC29\20210155_HC8.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC8.pin F:\testbeijing\HC29\20210155_HC8.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC3.pepXML F:\testbeijing\HC3\20210070_HC3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_HC3.pin F:\testbeijing\HC3\20210070_HC3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC9.pepXML F:\testbeijing\HC30\20210155_HC9.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_HC9.pin F:\testbeijing\HC30\20210155_HC9.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_10.pepXML F:\testbeijing\HC4\20210105_HC_10.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_10.pin F:\testbeijing\HC4\20210105_HC_10.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_1_20210330145706.pepXML F:\testbeijing\HC5\20210105_HC_1_20210330145706.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_1_20210330145706.pin F:\testbeijing\HC5\20210105_HC_1_20210330145706.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_2_20210330170407.pepXML F:\testbeijing\HC6\20210105_HC_2_20210330170407.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_2_20210330170407.pin F:\testbeijing\HC6\20210105_HC_2_20210330170407.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_3.pepXML F:\testbeijing\HC7\20210105_HC_3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_3.pin F:\testbeijing\HC7\20210105_HC_3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_4.pepXML F:\testbeijing\HC8\20210105_HC_4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_4.pin F:\testbeijing\HC8\20210105_HC_4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_5.pepXML F:\testbeijing\HC9\20210105_HC_5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_HC_5.pin F:\testbeijing\HC9\20210105_HC_5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG1.pepXML F:\testbeijing\RA1\20210070_APCA_NEG1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG1.pin F:\testbeijing\RA1\20210070_APCA_NEG1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_4.pepXML F:\testbeijing\RA10\20210105_ACPA_N_4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_4.pin F:\testbeijing\RA10\20210105_ACPA_N_4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_5.pepXML F:\testbeijing\RA11\20210105_ACPA_N_5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_5.pin F:\testbeijing\RA11\20210105_ACPA_N_5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_1.pepXML F:\testbeijing\RA12\20210105_ACPA_P_1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_1.pin F:\testbeijing\RA12\20210105_ACPA_P_1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_10.pepXML F:\testbeijing\RA13\20210105_ACPA_P_10.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_10.pin F:\testbeijing\RA13\20210105_ACPA_P_10.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_11.pepXML F:\testbeijing\RA14\20210105_ACPA_P_11.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_11.pin F:\testbeijing\RA14\20210105_ACPA_P_11.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_12.pepXML F:\testbeijing\RA15\20210105_ACPA_P_12.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_12.pin F:\testbeijing\RA15\20210105_ACPA_P_12.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_13.pepXML F:\testbeijing\RA16\20210105_ACPA_P_13.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_13.pin F:\testbeijing\RA16\20210105_ACPA_P_13.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_2.pepXML F:\testbeijing\RA17\20210105_ACPA_P_2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_2.pin F:\testbeijing\RA17\20210105_ACPA_P_2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_3.pepXML F:\testbeijing\RA18\20210105_ACPA_P_3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_3.pin F:\testbeijing\RA18\20210105_ACPA_P_3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_4.pepXML F:\testbeijing\RA19\20210105_ACPA_P_4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_4.pin F:\testbeijing\RA19\20210105_ACPA_P_4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG2.pepXML F:\testbeijing\RA2\20210070_APCA_NEG2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG2.pin F:\testbeijing\RA2\20210070_APCA_NEG2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_5.pepXML F:\testbeijing\RA20\20210105_ACPA_P_5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_5.pin F:\testbeijing\RA20\20210105_ACPA_P_5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_6.pepXML F:\testbeijing\RA21\20210105_ACPA_P_6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_6.pin F:\testbeijing\RA21\20210105_ACPA_P_6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_7.pepXML F:\testbeijing\RA22\20210105_ACPA_P_7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_7.pin F:\testbeijing\RA22\20210105_ACPA_P_7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_8.pepXML F:\testbeijing\RA23\20210105_ACPA_P_8.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_8.pin F:\testbeijing\RA23\20210105_ACPA_P_8.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_9.pepXML F:\testbeijing\RA24\20210105_ACPA_P_9.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_P_9.pin F:\testbeijing\RA24\20210105_ACPA_P_9.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG1.pepXML F:\testbeijing\RA25\20210155_APCA_NEG1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG1.pin F:\testbeijing\RA25\20210155_APCA_NEG1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG2.pepXML F:\testbeijing\RA26\20210155_APCA_NEG2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG2.pin F:\testbeijing\RA26\20210155_APCA_NEG2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG3.pepXML F:\testbeijing\RA27\20210155_APCA_NEG3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG3.pin F:\testbeijing\RA27\20210155_APCA_NEG3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG4.pepXML F:\testbeijing\RA28\20210155_APCA_NEG4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG4.pin F:\testbeijing\RA28\20210155_APCA_NEG4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG5.pepXML F:\testbeijing\RA29\20210155_APCA_NEG5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG5.pin F:\testbeijing\RA29\20210155_APCA_NEG5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG3.pepXML F:\testbeijing\RA3\20210070_APCA_NEG3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_NEG3.pin F:\testbeijing\RA3\20210070_APCA_NEG3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG6.pepXML F:\testbeijing\RA30\20210155_APCA_NEG6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG6.pin F:\testbeijing\RA30\20210155_APCA_NEG6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG7.pepXML F:\testbeijing\RA31\20210155_APCA_NEG7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_NEG7.pin F:\testbeijing\RA31\20210155_APCA_NEG7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS1.pepXML F:\testbeijing\RA32\20210155_APCA_POS1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS1.pin F:\testbeijing\RA32\20210155_APCA_POS1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS10.pepXML F:\testbeijing\RA33\20210155_APCA_POS10.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS10.pin F:\testbeijing\RA33\20210155_APCA_POS10.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS11.pepXML F:\testbeijing\RA34\20210155_APCA_POS11.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS11.pin F:\testbeijing\RA34\20210155_APCA_POS11.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS12.pepXML F:\testbeijing\RA35\20210155_APCA_POS12.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS12.pin F:\testbeijing\RA35\20210155_APCA_POS12.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS13.pepXML F:\testbeijing\RA36\20210155_APCA_POS13.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS13.pin F:\testbeijing\RA36\20210155_APCA_POS13.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS14.pepXML F:\testbeijing\RA37\20210155_APCA_POS14.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS14.pin F:\testbeijing\RA37\20210155_APCA_POS14.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS15.pepXML F:\testbeijing\RA38\20210155_APCA_POS15.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS15.pin F:\testbeijing\RA38\20210155_APCA_POS15.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS16.pepXML F:\testbeijing\RA39\20210155_APCA_POS16.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS16.pin F:\testbeijing\RA39\20210155_APCA_POS16.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS1.pepXML F:\testbeijing\RA4\20210070_APCA_POS1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS1.pin F:\testbeijing\RA4\20210070_APCA_POS1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS17.pepXML F:\testbeijing\RA40\20210155_APCA_POS17.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS17.pin F:\testbeijing\RA40\20210155_APCA_POS17.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS18.pepXML F:\testbeijing\RA41\20210155_APCA_POS18.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS18.pin F:\testbeijing\RA41\20210155_APCA_POS18.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS19.pepXML F:\testbeijing\RA42\20210155_APCA_POS19.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS19.pin F:\testbeijing\RA42\20210155_APCA_POS19.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS2.pepXML F:\testbeijing\RA43\20210155_APCA_POS2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS2.pin F:\testbeijing\RA43\20210155_APCA_POS2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS20.pepXML F:\testbeijing\RA44\20210155_APCA_POS20.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS20.pin F:\testbeijing\RA44\20210155_APCA_POS20.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS21.pepXML F:\testbeijing\RA45\20210155_APCA_POS21.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS21.pin F:\testbeijing\RA45\20210155_APCA_POS21.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS22.pepXML F:\testbeijing\RA46\20210155_APCA_POS22.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS22.pin F:\testbeijing\RA46\20210155_APCA_POS22.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS23.pepXML F:\testbeijing\RA47\20210155_APCA_POS23.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS23.pin F:\testbeijing\RA47\20210155_APCA_POS23.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS24.pepXML F:\testbeijing\RA48\20210155_APCA_POS24.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS24.pin F:\testbeijing\RA48\20210155_APCA_POS24.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS25.pepXML F:\testbeijing\RA49\20210155_APCA_POS25.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS25.pin F:\testbeijing\RA49\20210155_APCA_POS25.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS2.pepXML F:\testbeijing\RA5\20210070_APCA_POS2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS2.pin F:\testbeijing\RA5\20210070_APCA_POS2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS26.pepXML F:\testbeijing\RA50\20210155_APCA_POS26.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS26.pin F:\testbeijing\RA50\20210155_APCA_POS26.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS27.pepXML F:\testbeijing\RA51\20210155_APCA_POS27.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS27.pin F:\testbeijing\RA51\20210155_APCA_POS27.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS28.pepXML F:\testbeijing\RA52\20210155_APCA_POS28.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS28.pin F:\testbeijing\RA52\20210155_APCA_POS28.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS29_20210519114001.pepXML F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS29_20210519114001.pin F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS3.pepXML F:\testbeijing\RA54\20210155_APCA_POS3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS3.pin F:\testbeijing\RA54\20210155_APCA_POS3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS4.pepXML F:\testbeijing\RA55\20210155_APCA_POS4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS4.pin F:\testbeijing\RA55\20210155_APCA_POS4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS5.pepXML F:\testbeijing\RA56\20210155_APCA_POS5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS5.pin F:\testbeijing\RA56\20210155_APCA_POS5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS6.pepXML F:\testbeijing\RA57\20210155_APCA_POS6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS6.pin F:\testbeijing\RA57\20210155_APCA_POS6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS7.pepXML F:\testbeijing\RA58\20210155_APCA_POS7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS7.pin F:\testbeijing\RA58\20210155_APCA_POS7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS8.pepXML F:\testbeijing\RA59\20210155_APCA_POS8.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS8.pin F:\testbeijing\RA59\20210155_APCA_POS8.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS3.pepXML F:\testbeijing\RA6\20210070_APCA_POS3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210070_APCA_POS3.pin F:\testbeijing\RA6\20210070_APCA_POS3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS9.pepXML F:\testbeijing\RA60\20210155_APCA_POS9.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210155_APCA_POS9.pin F:\testbeijing\RA60\20210155_APCA_POS9.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_1.pepXML F:\testbeijing\RA7\20210105_ACPA_N_1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_1.pin F:\testbeijing\RA7\20210105_ACPA_N_1.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_2.pepXML F:\testbeijing\RA8\20210105_ACPA_N_2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_2.pin F:\testbeijing\RA8\20210105_ACPA_N_2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_3.pepXML F:\testbeijing\RA9\20210105_ACPA_N_3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/User/AppData/Local/Temp/Rar$EXa13424.45482/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err F:\PXD031498\20210105_ACPA_N_3.pin F:\testbeijing\RA9\20210105_ACPA_N_3.pin Process 'MSFragger move pin' finished, exit code: 0 MSBooster [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -Xmx39G -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\MSBooster-1.2.31.jar;C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\batmass-io-1.33.4.jar Features.MainClass --paramsList F:\testbeijing\msbooster_params.txt 2024-07-29 22:36:32 [INFO] - MSBooster v1.2.31 2024-07-29 22:36:32 [INFO] - Using 15 threads 2024-07-29 22:36:32 [INFO] - Initializing F:\PXD031498\20210105_HC_6.mzML 2024-07-29 22:36:39 [INFO] - Instrument detected: Lumos 2024-07-29 22:36:39 [INFO] - Initializing F:\PXD031498\20210105_HC_7.mzML 2024-07-29 22:36:45 [INFO] - Initializing F:\PXD031498\20210105_HC_8_20210401021911.mzML 2024-07-29 22:36:52 [INFO] - Initializing F:\PXD031498\20210105_HC_9.mzML 2024-07-29 22:36:58 [INFO] - Initializing F:\PXD031498\20210155_HC10.mzML 2024-07-29 22:37:05 [INFO] - Initializing F:\PXD031498\20210155_HC11.mzML 2024-07-29 22:37:11 [INFO] - Initializing F:\PXD031498\20210155_HC12.mzML 2024-07-29 22:37:19 [INFO] - Initializing F:\PXD031498\20210155_HC13.mzML 2024-07-29 22:37:25 [INFO] - Initializing F:\PXD031498\20210155_HC14.mzML 2024-07-29 22:37:32 [INFO] - Initializing F:\PXD031498\20210155_HC15.mzML 2024-07-29 22:37:40 [INFO] - Initializing F:\PXD031498\20210070_HC1.mzML 2024-07-29 22:37:47 [INFO] - Initializing F:\PXD031498\20210155_HC16.mzML 2024-07-29 22:37:54 [INFO] - Initializing F:\PXD031498\20210155_HC17.mzML 2024-07-29 22:38:01 [INFO] - Initializing F:\PXD031498\20210155_HC1_20210513132744.mzML 2024-07-29 22:38:09 [INFO] - Initializing F:\PXD031498\20210155_HC2_20210513153447.mzML 2024-07-29 22:38:16 [INFO] - Initializing F:\PXD031498\20210155_HC3_20210513174150.mzML 2024-07-29 22:38:23 [INFO] - Initializing F:\PXD031498\20210155_HC4.mzML 2024-07-29 22:38:30 [INFO] - Initializing F:\PXD031498\20210155_HC5.mzML 2024-07-29 22:38:38 [INFO] - Initializing F:\PXD031498\20210155_HC6.mzML 2024-07-29 22:38:44 [INFO] - Initializing F:\PXD031498\20210155_HC7.mzML 2024-07-29 22:38:51 [INFO] - Initializing F:\PXD031498\20210155_HC8.mzML 2024-07-29 22:38:58 [INFO] - Initializing F:\PXD031498\20210070_HC2.mzML 2024-07-29 22:39:05 [INFO] - Initializing F:\PXD031498\20210155_HC9.mzML 2024-07-29 22:39:12 [INFO] - Initializing F:\PXD031498\20210070_HC3.mzML 2024-07-29 22:39:19 [INFO] - Initializing F:\PXD031498\20210105_HC_10.mzML 2024-07-29 22:39:26 [INFO] - Initializing F:\PXD031498\20210105_HC_1_20210330145706.mzML 2024-07-29 22:39:33 [INFO] - Initializing F:\PXD031498\20210105_HC_2_20210330170407.mzML 2024-07-29 22:39:39 [INFO] - Initializing F:\PXD031498\20210105_HC_3.mzML 2024-07-29 22:39:46 [INFO] - Initializing F:\PXD031498\20210105_HC_4.mzML 2024-07-29 22:39:53 [INFO] - Initializing F:\PXD031498\20210105_HC_5.mzML 2024-07-29 22:40:00 [INFO] - Initializing F:\PXD031498\20210105_ACPA_N_4.mzML 2024-07-29 22:40:06 [INFO] - Initializing F:\PXD031498\20210105_ACPA_N_5.mzML 2024-07-29 22:40:13 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_1.mzML 2024-07-29 22:40:20 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_10.mzML 2024-07-29 22:40:27 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_11.mzML 2024-07-29 22:40:34 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_12.mzML 2024-07-29 22:40:41 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_13.mzML 2024-07-29 22:40:48 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_2.mzML 2024-07-29 22:40:55 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_3.mzML 2024-07-29 22:41:02 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_4.mzML 2024-07-29 22:41:09 [INFO] - Initializing F:\PXD031498\20210070_APCA_NEG1.mzML 2024-07-29 22:41:16 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_5.mzML 2024-07-29 22:41:23 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_6.mzML 2024-07-29 22:41:30 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_7.mzML 2024-07-29 22:41:38 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_8.mzML 2024-07-29 22:41:44 [INFO] - Initializing F:\PXD031498\20210105_ACPA_P_9.mzML 2024-07-29 22:41:52 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG1.mzML 2024-07-29 22:41:58 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG2.mzML 2024-07-29 22:42:05 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG3.mzML 2024-07-29 22:42:12 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG4.mzML 2024-07-29 22:42:20 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG5.mzML 2024-07-29 22:42:26 [INFO] - Initializing F:\PXD031498\20210070_APCA_NEG2.mzML 2024-07-29 22:42:33 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG6.mzML 2024-07-29 22:42:40 [INFO] - Initializing F:\PXD031498\20210155_APCA_NEG7.mzML 2024-07-29 22:42:47 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS1.mzML 2024-07-29 22:42:54 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS10.mzML 2024-07-29 22:43:01 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS11.mzML 2024-07-29 22:43:08 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS12.mzML 2024-07-29 22:43:15 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS13.mzML 2024-07-29 22:43:22 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS14.mzML 2024-07-29 22:43:29 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS15.mzML 2024-07-29 22:43:36 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS16.mzML 2024-07-29 22:43:43 [INFO] - Initializing F:\PXD031498\20210070_APCA_NEG3.mzML 2024-07-29 22:43:50 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS17.mzML 2024-07-29 22:43:57 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS18.mzML 2024-07-29 22:44:04 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS19.mzML 2024-07-29 22:44:11 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS2.mzML 2024-07-29 22:44:18 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS20.mzML 2024-07-29 22:44:25 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS21.mzML 2024-07-29 22:44:32 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS22.mzML 2024-07-29 22:44:39 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS23.mzML 2024-07-29 22:44:46 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS24.mzML 2024-07-29 22:44:53 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS25.mzML 2024-07-29 22:45:00 [INFO] - Initializing F:\PXD031498\20210070_APCA_POS1.mzML 2024-07-29 22:45:07 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS26.mzML 2024-07-29 22:45:14 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS27.mzML 2024-07-29 22:45:21 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS28.mzML 2024-07-29 22:45:28 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML 2024-07-29 22:45:35 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS3.mzML 2024-07-29 22:45:42 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS4.mzML 2024-07-29 22:45:49 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS5.mzML 2024-07-29 22:45:56 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS6.mzML 2024-07-29 22:46:03 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS7.mzML 2024-07-29 22:46:10 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS8.mzML 2024-07-29 22:46:17 [INFO] - Initializing F:\PXD031498\20210070_APCA_POS2.mzML 2024-07-29 22:46:24 [INFO] - Initializing F:\PXD031498\20210155_APCA_POS9.mzML 2024-07-29 22:46:31 [INFO] - Initializing F:\PXD031498\20210070_APCA_POS3.mzML 2024-07-29 22:46:38 [INFO] - Initializing F:\PXD031498\20210105_ACPA_N_1.mzML 2024-07-29 22:46:46 [INFO] - Initializing F:\PXD031498\20210105_ACPA_N_2.mzML 2024-07-29 22:46:52 [INFO] - Initializing F:\PXD031498\20210105_ACPA_N_3.mzML 2024-07-29 22:46:59 [INFO] - Fragmentation type detected: HCD 2024-07-29 22:46:59 [INFO] - NCE detected: 30.0 2024-07-29 22:46:59 [INFO] - Creating input file for createFull 2024-07-29 22:47:27 [INFO] - 1156101 PSMs for prediction 2024-07-29 22:47:27 [INFO] - createFull input file generation took 27979 milliseconds 2024-07-29 22:47:27 [INFO] - Input file at F:\testbeijing\RA28\spectraRT_full.tsv 2024-07-29 22:47:27 [INFO] - Generating input file for DIA-NN 2024-07-29 22:47:27 [INFO] - Creating input file for Diann 2024-07-29 22:47:31 [INFO] - 1156101 PSMs for prediction 2024-07-29 22:47:31 [INFO] - Writing DIA-NN input file 2024-07-29 22:47:32 [INFO] - Diann input file generation took 4224 milliseconds 2024-07-29 22:47:32 [INFO] - Input file at F:\testbeijing\RA28\spectraRT.tsv 2024-07-29 22:47:32 [INFO] - Generating DIA-NN predictions 2024-07-29 22:47:32 [INFO] - C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe --lib F:\testbeijing\RA28\spectraRT.tsv --predict --threads 15 --strip-unknown-mods --predict-n-frag 100 2024-07-29 22:47:32 [INFO] - DIA-NN 1.8.2 beta 8 (Data-Independent Acquisition by Neural Networks) 2024-07-29 22:47:32 [INFO] - Compiled on Sep 15 2022 18:28:57 2024-07-29 22:47:32 [INFO] - Current date and time: Mon Jul 29 22:47:32 2024 2024-07-29 22:47:32 [INFO] - CPU: GenuineIntel Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz 2024-07-29 22:47:32 [INFO] - SIMD instructions: AVX AVX2 FMA SSE4.1 SSE4.2 2024-07-29 22:47:32 [INFO] - Logical CPU cores: 16 2024-07-29 22:47:32 [INFO] - Predicted spectra will be saved in a binary format 2024-07-29 22:47:32 [INFO] - Thread number set to 15 2024-07-29 22:47:32 [INFO] - DIA-NN will use deep learning to predict spectra/RTs/IMs even for peptides carrying modifications which are not recognised by the deep learning predictor. In this scenario, if also generating a spectral library from the DIA data or using the MBR mode, it might or might not be better (depends on the data) to also use the --out-measured-rt option - it's recommended to test it with and without this option 2024-07-29 22:47:32 [INFO] - Deep learning predictor will predict 100 fragments 2024-07-29 22:47:32 [INFO] - 2024-07-29 22:47:32 [INFO] - 0 files will be processed 2024-07-29 22:47:32 [INFO] - [0:00] Loading spectral library F:\testbeijing\RA28\spectraRT.tsv 2024-07-29 22:47:37 [INFO] - [0:05] Finding proteotypic peptides (assuming that the list of UniProt ids provided for each peptide is complete) 2024-07-29 22:47:38 [INFO] - [0:06] Spectral library loaded: 0 protein isoforms, 0 protein groups and 1156101 precursors in 1118329 elution groups. 2024-07-29 22:47:39 [INFO] - [0:06] Encoding peptides for spectra and RTs prediction 2024-07-29 22:47:40 [INFO] - [0:08] Predicting spectra and IMs 2024-07-29 22:58:56 [INFO] - [11:24] Predicting RTs 2024-07-29 23:01:45 [INFO] - [14:13] Decoding predicted spectra and IMs 2024-07-29 23:02:11 [INFO] - [14:39] Decoding RTs 2024-07-29 23:02:12 [INFO] - [14:40] Saving the list of predictions to F:\testbeijing\RA28\spectraRT.predicted.bin 2024-07-29 23:02:20 [INFO] - Finished 2024-07-29 23:02:21 [INFO] - Done generating DIA-NN predictions 2024-07-29 23:02:21 [INFO] - Model running took 889885 milliseconds 2024-07-29 23:02:21 [INFO] - Generating edited pin with following features: [predRTrealUnits, unweightedSpectralEntropy, deltaRTLOESS] 2024-07-29 23:02:21 [INFO] - Loading predicted library 2024-07-29 23:02:39 [INFO] - Processing pin F:\testbeijing\HC10\20210105_HC_6.pin 2024-07-29 23:02:40 [INFO] - F:\testbeijing\HC10\20210105_HC_6.pin has 33431 PSMs 2024-07-29 23:02:40 [INFO] - Processing F:\PXD031498\20210105_HC_6.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:47 [INFO] - RT regression using 2486 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:02:48 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:02:49 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:50 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:50 [INFO] - Edited pin file at F:\testbeijing\HC10\20210105_HC_6_edited.pin 2024-07-29 23:02:50 [INFO] - Processing pin F:\testbeijing\HC11\20210105_HC_7.pin 2024-07-29 23:02:50 [INFO] - F:\testbeijing\HC11\20210105_HC_7.pin has 29336 PSMs 2024-07-29 23:02:50 [INFO] - Processing F:\PXD031498\20210105_HC_7.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:57 [INFO] - RT regression using 2229 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:02:58 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:02:58 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:58 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:02:59 [INFO] - Edited pin file at F:\testbeijing\HC11\20210105_HC_7_edited.pin 2024-07-29 23:02:59 [INFO] - Processing pin F:\testbeijing\HC12\20210105_HC_8_20210401021911.pin 2024-07-29 23:02:59 [INFO] - F:\testbeijing\HC12\20210105_HC_8_20210401021911.pin has 27270 PSMs 2024-07-29 23:02:59 [INFO] - Processing F:\PXD031498\20210105_HC_8_20210401021911.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:05 [INFO] - RT regression using 1993 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:06 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.042 2024-07-29 23:03:07 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:07 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:07 [INFO] - Edited pin file at F:\testbeijing\HC12\20210105_HC_8_20210401021911_edited.pin 2024-07-29 23:03:07 [INFO] - Processing pin F:\testbeijing\HC13\20210105_HC_9.pin 2024-07-29 23:03:08 [INFO] - F:\testbeijing\HC13\20210105_HC_9.pin has 33954 PSMs 2024-07-29 23:03:08 [INFO] - Processing F:\PXD031498\20210105_HC_9.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:15 [INFO] - RT regression using 2380 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:16 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.042 2024-07-29 23:03:17 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:17 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:17 [INFO] - Edited pin file at F:\testbeijing\HC13\20210105_HC_9_edited.pin 2024-07-29 23:03:17 [INFO] - Processing pin F:\testbeijing\HC14\20210155_HC10.pin 2024-07-29 23:03:17 [INFO] - F:\testbeijing\HC14\20210155_HC10.pin has 39400 PSMs 2024-07-29 23:03:17 [INFO] - Processing F:\PXD031498\20210155_HC10.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:24 [INFO] - RT regression using 2527 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:26 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:03:26 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:27 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:27 [INFO] - Edited pin file at F:\testbeijing\HC14\20210155_HC10_edited.pin 2024-07-29 23:03:27 [INFO] - Processing pin F:\testbeijing\HC15\20210155_HC11.pin 2024-07-29 23:03:27 [INFO] - F:\testbeijing\HC15\20210155_HC11.pin has 38412 PSMs 2024-07-29 23:03:27 [INFO] - Processing F:\PXD031498\20210155_HC11.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:35 [INFO] - RT regression using 2553 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:35 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:03:36 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:36 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:37 [INFO] - Edited pin file at F:\testbeijing\HC15\20210155_HC11_edited.pin 2024-07-29 23:03:37 [INFO] - Processing pin F:\testbeijing\HC16\20210155_HC12.pin 2024-07-29 23:03:37 [INFO] - F:\testbeijing\HC16\20210155_HC12.pin has 38484 PSMs 2024-07-29 23:03:37 [INFO] - Processing F:\PXD031498\20210155_HC12.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:44 [INFO] - RT regression using 2526 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:45 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.062 2024-07-29 23:03:47 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:47 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:47 [INFO] - Edited pin file at F:\testbeijing\HC16\20210155_HC12_edited.pin 2024-07-29 23:03:47 [INFO] - Processing pin F:\testbeijing\HC17\20210155_HC13.pin 2024-07-29 23:03:48 [INFO] - F:\testbeijing\HC17\20210155_HC13.pin has 31952 PSMs 2024-07-29 23:03:48 [INFO] - Processing F:\PXD031498\20210155_HC13.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:54 [INFO] - RT regression using 2134 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:03:55 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:03:56 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:56 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:03:56 [INFO] - Edited pin file at F:\testbeijing\HC17\20210155_HC13_edited.pin 2024-07-29 23:03:57 [INFO] - Processing pin F:\testbeijing\HC18\20210155_HC14.pin 2024-07-29 23:03:57 [INFO] - F:\testbeijing\HC18\20210155_HC14.pin has 37362 PSMs 2024-07-29 23:03:57 [INFO] - Processing F:\PXD031498\20210155_HC14.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:04 [INFO] - RT regression using 2523 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:05 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:04:05 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:05 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:06 [INFO] - Edited pin file at F:\testbeijing\HC18\20210155_HC14_edited.pin 2024-07-29 23:04:06 [INFO] - Processing pin F:\testbeijing\HC19\20210155_HC15.pin 2024-07-29 23:04:06 [INFO] - F:\testbeijing\HC19\20210155_HC15.pin has 43006 PSMs 2024-07-29 23:04:06 [INFO] - Processing F:\PXD031498\20210155_HC15.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:14 [INFO] - RT regression using 2732 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:15 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:04:15 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:15 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:16 [INFO] - Edited pin file at F:\testbeijing\HC19\20210155_HC15_edited.pin 2024-07-29 23:04:16 [INFO] - Processing pin F:\testbeijing\HC1\20210070_HC1.pin 2024-07-29 23:04:16 [INFO] - F:\testbeijing\HC1\20210070_HC1.pin has 43123 PSMs 2024-07-29 23:04:16 [INFO] - Processing F:\PXD031498\20210070_HC1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:24 [INFO] - RT regression using 2478 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:25 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:04:25 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:25 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:25 [INFO] - Edited pin file at F:\testbeijing\HC1\20210070_HC1_edited.pin 2024-07-29 23:04:26 [INFO] - Processing pin F:\testbeijing\HC20\20210155_HC16.pin 2024-07-29 23:04:26 [INFO] - F:\testbeijing\HC20\20210155_HC16.pin has 40491 PSMs 2024-07-29 23:04:26 [INFO] - Processing F:\PXD031498\20210155_HC16.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:33 [INFO] - RT regression using 2607 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:34 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.048 2024-07-29 23:04:36 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:36 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:36 [INFO] - Edited pin file at F:\testbeijing\HC20\20210155_HC16_edited.pin 2024-07-29 23:04:36 [INFO] - Processing pin F:\testbeijing\HC21\20210155_HC17.pin 2024-07-29 23:04:37 [INFO] - F:\testbeijing\HC21\20210155_HC17.pin has 40136 PSMs 2024-07-29 23:04:37 [INFO] - Processing F:\PXD031498\20210155_HC17.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:44 [INFO] - RT regression using 2487 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:45 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:04:46 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:46 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:46 [INFO] - Edited pin file at F:\testbeijing\HC21\20210155_HC17_edited.pin 2024-07-29 23:04:46 [INFO] - Processing pin F:\testbeijing\HC22\20210155_HC1_20210513132744.pin 2024-07-29 23:04:47 [INFO] - F:\testbeijing\HC22\20210155_HC1_20210513132744.pin has 38449 PSMs 2024-07-29 23:04:47 [INFO] - Processing F:\PXD031498\20210155_HC1_20210513132744.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:54 [INFO] - RT regression using 2366 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:04:55 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.054 2024-07-29 23:04:57 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:57 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:04:57 [INFO] - Edited pin file at F:\testbeijing\HC22\20210155_HC1_20210513132744_edited.pin 2024-07-29 23:04:57 [INFO] - Processing pin F:\testbeijing\HC23\20210155_HC2_20210513153447.pin 2024-07-29 23:04:58 [INFO] - F:\testbeijing\HC23\20210155_HC2_20210513153447.pin has 37917 PSMs 2024-07-29 23:04:58 [INFO] - Processing F:\PXD031498\20210155_HC2_20210513153447.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:05 [INFO] - RT regression using 2238 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:05 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.036 2024-07-29 23:05:06 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:07 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:07 [INFO] - Edited pin file at F:\testbeijing\HC23\20210155_HC2_20210513153447_edited.pin 2024-07-29 23:05:07 [INFO] - Processing pin F:\testbeijing\HC24\20210155_HC3_20210513174150.pin 2024-07-29 23:05:07 [INFO] - F:\testbeijing\HC24\20210155_HC3_20210513174150.pin has 38044 PSMs 2024-07-29 23:05:07 [INFO] - Processing F:\PXD031498\20210155_HC3_20210513174150.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:14 [INFO] - RT regression using 2112 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:15 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:05:16 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:16 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:16 [INFO] - Edited pin file at F:\testbeijing\HC24\20210155_HC3_20210513174150_edited.pin 2024-07-29 23:05:16 [INFO] - Processing pin F:\testbeijing\HC25\20210155_HC4.pin 2024-07-29 23:05:16 [INFO] - F:\testbeijing\HC25\20210155_HC4.pin has 38731 PSMs 2024-07-29 23:05:16 [INFO] - Processing F:\PXD031498\20210155_HC4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:24 [INFO] - RT regression using 2219 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:24 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:05:25 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:25 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:25 [INFO] - Edited pin file at F:\testbeijing\HC25\20210155_HC4_edited.pin 2024-07-29 23:05:26 [INFO] - Processing pin F:\testbeijing\HC26\20210155_HC5.pin 2024-07-29 23:05:26 [INFO] - F:\testbeijing\HC26\20210155_HC5.pin has 40926 PSMs 2024-07-29 23:05:26 [INFO] - Processing F:\PXD031498\20210155_HC5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:33 [INFO] - RT regression using 2225 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:34 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:05:35 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:35 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:35 [INFO] - Edited pin file at F:\testbeijing\HC26\20210155_HC5_edited.pin 2024-07-29 23:05:36 [INFO] - Processing pin F:\testbeijing\HC27\20210155_HC6.pin 2024-07-29 23:05:36 [INFO] - F:\testbeijing\HC27\20210155_HC6.pin has 39897 PSMs 2024-07-29 23:05:36 [INFO] - Processing F:\PXD031498\20210155_HC6.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:43 [INFO] - RT regression using 2751 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:44 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.052 2024-07-29 23:05:45 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:46 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:46 [INFO] - Edited pin file at F:\testbeijing\HC27\20210155_HC6_edited.pin 2024-07-29 23:05:46 [INFO] - Processing pin F:\testbeijing\HC28\20210155_HC7.pin 2024-07-29 23:05:46 [INFO] - F:\testbeijing\HC28\20210155_HC7.pin has 40934 PSMs 2024-07-29 23:05:46 [INFO] - Processing F:\PXD031498\20210155_HC7.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:53 [INFO] - RT regression using 2586 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:05:54 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.036 2024-07-29 23:05:56 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:56 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:05:56 [INFO] - Edited pin file at F:\testbeijing\HC28\20210155_HC7_edited.pin 2024-07-29 23:05:56 [INFO] - Processing pin F:\testbeijing\HC29\20210155_HC8.pin 2024-07-29 23:05:56 [INFO] - F:\testbeijing\HC29\20210155_HC8.pin has 36076 PSMs 2024-07-29 23:05:56 [INFO] - Processing F:\PXD031498\20210155_HC8.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:03 [INFO] - RT regression using 2393 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:04 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:06:04 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:05 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:05 [INFO] - Edited pin file at F:\testbeijing\HC29\20210155_HC8_edited.pin 2024-07-29 23:06:05 [INFO] - Processing pin F:\testbeijing\HC2\20210070_HC2.pin 2024-07-29 23:06:05 [INFO] - F:\testbeijing\HC2\20210070_HC2.pin has 32255 PSMs 2024-07-29 23:06:05 [INFO] - Processing F:\PXD031498\20210070_HC2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:12 [INFO] - RT regression using 2142 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:12 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:06:13 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:13 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:13 [INFO] - Edited pin file at F:\testbeijing\HC2\20210070_HC2_edited.pin 2024-07-29 23:06:13 [INFO] - Processing pin F:\testbeijing\HC30\20210155_HC9.pin 2024-07-29 23:06:13 [INFO] - F:\testbeijing\HC30\20210155_HC9.pin has 42112 PSMs 2024-07-29 23:06:13 [INFO] - Processing F:\PXD031498\20210155_HC9.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:21 [INFO] - RT regression using 2775 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:22 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:06:23 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:23 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:23 [INFO] - Edited pin file at F:\testbeijing\HC30\20210155_HC9_edited.pin 2024-07-29 23:06:23 [INFO] - Processing pin F:\testbeijing\HC3\20210070_HC3.pin 2024-07-29 23:06:23 [INFO] - F:\testbeijing\HC3\20210070_HC3.pin has 37711 PSMs 2024-07-29 23:06:23 [INFO] - Processing F:\PXD031498\20210070_HC3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:31 [INFO] - RT regression using 2231 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:32 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:06:32 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:32 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:32 [INFO] - Edited pin file at F:\testbeijing\HC3\20210070_HC3_edited.pin 2024-07-29 23:06:33 [INFO] - Processing pin F:\testbeijing\HC4\20210105_HC_10.pin 2024-07-29 23:06:33 [INFO] - F:\testbeijing\HC4\20210105_HC_10.pin has 33595 PSMs 2024-07-29 23:06:33 [INFO] - Processing F:\PXD031498\20210105_HC_10.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:39 [INFO] - RT regression using 2340 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:40 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.05 2024-07-29 23:06:41 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:41 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:42 [INFO] - Edited pin file at F:\testbeijing\HC4\20210105_HC_10_edited.pin 2024-07-29 23:06:42 [INFO] - Processing pin F:\testbeijing\HC5\20210105_HC_1_20210330145706.pin 2024-07-29 23:06:42 [INFO] - F:\testbeijing\HC5\20210105_HC_1_20210330145706.pin has 41687 PSMs 2024-07-29 23:06:42 [INFO] - Processing F:\PXD031498\20210105_HC_1_20210330145706.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:50 [INFO] - RT regression using 2620 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:06:51 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:06:52 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:52 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:06:52 [INFO] - Edited pin file at F:\testbeijing\HC5\20210105_HC_1_20210330145706_edited.pin 2024-07-29 23:06:53 [INFO] - Processing pin F:\testbeijing\HC6\20210105_HC_2_20210330170407.pin 2024-07-29 23:06:53 [INFO] - F:\testbeijing\HC6\20210105_HC_2_20210330170407.pin has 38440 PSMs 2024-07-29 23:06:53 [INFO] - Processing F:\PXD031498\20210105_HC_2_20210330170407.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:00 [INFO] - RT regression using 2761 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:01 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:07:02 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:02 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:02 [INFO] - Edited pin file at F:\testbeijing\HC6\20210105_HC_2_20210330170407_edited.pin 2024-07-29 23:07:02 [INFO] - Processing pin F:\testbeijing\HC7\20210105_HC_3.pin 2024-07-29 23:07:02 [INFO] - F:\testbeijing\HC7\20210105_HC_3.pin has 34343 PSMs 2024-07-29 23:07:02 [INFO] - Processing F:\PXD031498\20210105_HC_3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:09 [INFO] - RT regression using 2532 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:10 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:07:11 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:11 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:11 [INFO] - Edited pin file at F:\testbeijing\HC7\20210105_HC_3_edited.pin 2024-07-29 23:07:11 [INFO] - Processing pin F:\testbeijing\HC8\20210105_HC_4.pin 2024-07-29 23:07:11 [INFO] - F:\testbeijing\HC8\20210105_HC_4.pin has 34583 PSMs 2024-07-29 23:07:11 [INFO] - Processing F:\PXD031498\20210105_HC_4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:18 [INFO] - RT regression using 2556 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:19 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:07:19 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:19 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:20 [INFO] - Edited pin file at F:\testbeijing\HC8\20210105_HC_4_edited.pin 2024-07-29 23:07:20 [INFO] - Processing pin F:\testbeijing\HC9\20210105_HC_5.pin 2024-07-29 23:07:20 [INFO] - F:\testbeijing\HC9\20210105_HC_5.pin has 34999 PSMs 2024-07-29 23:07:20 [INFO] - Processing F:\PXD031498\20210105_HC_5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:27 [INFO] - RT regression using 2542 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:28 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:07:29 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:29 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:29 [INFO] - Edited pin file at F:\testbeijing\HC9\20210105_HC_5_edited.pin 2024-07-29 23:07:29 [INFO] - Processing pin F:\testbeijing\RA10\20210105_ACPA_N_4.pin 2024-07-29 23:07:30 [INFO] - F:\testbeijing\RA10\20210105_ACPA_N_4.pin has 35184 PSMs 2024-07-29 23:07:30 [INFO] - Processing F:\PXD031498\20210105_ACPA_N_4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:37 [INFO] - RT regression using 2521 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:38 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.08 2024-07-29 23:07:39 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:39 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:39 [INFO] - Edited pin file at F:\testbeijing\RA10\20210105_ACPA_N_4_edited.pin 2024-07-29 23:07:40 [INFO] - Processing pin F:\testbeijing\RA11\20210105_ACPA_N_5.pin 2024-07-29 23:07:40 [INFO] - F:\testbeijing\RA11\20210105_ACPA_N_5.pin has 34087 PSMs 2024-07-29 23:07:40 [INFO] - Processing F:\PXD031498\20210105_ACPA_N_5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:47 [INFO] - RT regression using 2580 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:48 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.044 2024-07-29 23:07:49 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:49 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:49 [INFO] - Edited pin file at F:\testbeijing\RA11\20210105_ACPA_N_5_edited.pin 2024-07-29 23:07:49 [INFO] - Processing pin F:\testbeijing\RA12\20210105_ACPA_P_1.pin 2024-07-29 23:07:49 [INFO] - F:\testbeijing\RA12\20210105_ACPA_P_1.pin has 35861 PSMs 2024-07-29 23:07:49 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:57 [INFO] - RT regression using 2541 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:07:58 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:07:58 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:58 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:07:59 [INFO] - Edited pin file at F:\testbeijing\RA12\20210105_ACPA_P_1_edited.pin 2024-07-29 23:07:59 [INFO] - Processing pin F:\testbeijing\RA13\20210105_ACPA_P_10.pin 2024-07-29 23:07:59 [INFO] - F:\testbeijing\RA13\20210105_ACPA_P_10.pin has 34732 PSMs 2024-07-29 23:07:59 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_10.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:06 [INFO] - RT regression using 2641 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:07 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:08:08 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:08 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:09 [INFO] - Edited pin file at F:\testbeijing\RA13\20210105_ACPA_P_10_edited.pin 2024-07-29 23:08:09 [INFO] - Processing pin F:\testbeijing\RA14\20210105_ACPA_P_11.pin 2024-07-29 23:08:09 [INFO] - F:\testbeijing\RA14\20210105_ACPA_P_11.pin has 38849 PSMs 2024-07-29 23:08:09 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_11.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:16 [INFO] - RT regression using 2584 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:17 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:08:18 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:18 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:18 [INFO] - Edited pin file at F:\testbeijing\RA14\20210105_ACPA_P_11_edited.pin 2024-07-29 23:08:18 [INFO] - Processing pin F:\testbeijing\RA15\20210105_ACPA_P_12.pin 2024-07-29 23:08:19 [INFO] - F:\testbeijing\RA15\20210105_ACPA_P_12.pin has 38924 PSMs 2024-07-29 23:08:19 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_12.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:26 [INFO] - RT regression using 2754 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:28 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:08:28 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:28 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:28 [INFO] - Edited pin file at F:\testbeijing\RA15\20210105_ACPA_P_12_edited.pin 2024-07-29 23:08:29 [INFO] - Processing pin F:\testbeijing\RA16\20210105_ACPA_P_13.pin 2024-07-29 23:08:29 [INFO] - F:\testbeijing\RA16\20210105_ACPA_P_13.pin has 36318 PSMs 2024-07-29 23:08:29 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_13.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:36 [INFO] - RT regression using 2522 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:37 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:08:37 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:37 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:38 [INFO] - Edited pin file at F:\testbeijing\RA16\20210105_ACPA_P_13_edited.pin 2024-07-29 23:08:38 [INFO] - Processing pin F:\testbeijing\RA17\20210105_ACPA_P_2.pin 2024-07-29 23:08:38 [INFO] - F:\testbeijing\RA17\20210105_ACPA_P_2.pin has 39444 PSMs 2024-07-29 23:08:38 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:45 [INFO] - RT regression using 2739 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:46 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:08:47 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:47 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:47 [INFO] - Edited pin file at F:\testbeijing\RA17\20210105_ACPA_P_2_edited.pin 2024-07-29 23:08:48 [INFO] - Processing pin F:\testbeijing\RA18\20210105_ACPA_P_3.pin 2024-07-29 23:08:48 [INFO] - F:\testbeijing\RA18\20210105_ACPA_P_3.pin has 40812 PSMs 2024-07-29 23:08:48 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:55 [INFO] - RT regression using 3097 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:08:57 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:08:57 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:57 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:08:58 [INFO] - Edited pin file at F:\testbeijing\RA18\20210105_ACPA_P_3_edited.pin 2024-07-29 23:08:58 [INFO] - Processing pin F:\testbeijing\RA19\20210105_ACPA_P_4.pin 2024-07-29 23:08:58 [INFO] - F:\testbeijing\RA19\20210105_ACPA_P_4.pin has 40630 PSMs 2024-07-29 23:08:58 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:06 [INFO] - RT regression using 2897 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:07 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:09:08 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:08 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:08 [INFO] - Edited pin file at F:\testbeijing\RA19\20210105_ACPA_P_4_edited.pin 2024-07-29 23:09:08 [INFO] - Processing pin F:\testbeijing\RA1\20210070_APCA_NEG1.pin 2024-07-29 23:09:09 [INFO] - F:\testbeijing\RA1\20210070_APCA_NEG1.pin has 33958 PSMs 2024-07-29 23:09:09 [INFO] - Processing F:\PXD031498\20210070_APCA_NEG1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:16 [INFO] - RT regression using 2229 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:16 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:09:17 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:17 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:17 [INFO] - Edited pin file at F:\testbeijing\RA1\20210070_APCA_NEG1_edited.pin 2024-07-29 23:09:17 [INFO] - Processing pin F:\testbeijing\RA20\20210105_ACPA_P_5.pin 2024-07-29 23:09:17 [INFO] - F:\testbeijing\RA20\20210105_ACPA_P_5.pin has 24243 PSMs 2024-07-29 23:09:17 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:24 [INFO] - RT regression using 1749 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:25 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:09:25 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:25 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:25 [INFO] - Edited pin file at F:\testbeijing\RA20\20210105_ACPA_P_5_edited.pin 2024-07-29 23:09:26 [INFO] - Processing pin F:\testbeijing\RA21\20210105_ACPA_P_6.pin 2024-07-29 23:09:26 [INFO] - F:\testbeijing\RA21\20210105_ACPA_P_6.pin has 42070 PSMs 2024-07-29 23:09:26 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_6.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:33 [INFO] - RT regression using 3073 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:34 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:09:35 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:35 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:35 [INFO] - Edited pin file at F:\testbeijing\RA21\20210105_ACPA_P_6_edited.pin 2024-07-29 23:09:36 [INFO] - Processing pin F:\testbeijing\RA22\20210105_ACPA_P_7.pin 2024-07-29 23:09:36 [INFO] - F:\testbeijing\RA22\20210105_ACPA_P_7.pin has 36624 PSMs 2024-07-29 23:09:36 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_7.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:43 [INFO] - RT regression using 2708 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:44 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:09:45 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:45 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:45 [INFO] - Edited pin file at F:\testbeijing\RA22\20210105_ACPA_P_7_edited.pin 2024-07-29 23:09:45 [INFO] - Processing pin F:\testbeijing\RA23\20210105_ACPA_P_8.pin 2024-07-29 23:09:45 [INFO] - F:\testbeijing\RA23\20210105_ACPA_P_8.pin has 37103 PSMs 2024-07-29 23:09:45 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_8.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:53 [INFO] - RT regression using 2818 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:09:54 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:09:54 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:55 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:09:55 [INFO] - Edited pin file at F:\testbeijing\RA23\20210105_ACPA_P_8_edited.pin 2024-07-29 23:09:55 [INFO] - Processing pin F:\testbeijing\RA24\20210105_ACPA_P_9.pin 2024-07-29 23:09:55 [INFO] - F:\testbeijing\RA24\20210105_ACPA_P_9.pin has 36185 PSMs 2024-07-29 23:09:55 [INFO] - Processing F:\PXD031498\20210105_ACPA_P_9.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:02 [INFO] - RT regression using 2690 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:03 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:10:03 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:04 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:04 [INFO] - Edited pin file at F:\testbeijing\RA24\20210105_ACPA_P_9_edited.pin 2024-07-29 23:10:04 [INFO] - Processing pin F:\testbeijing\RA25\20210155_APCA_NEG1.pin 2024-07-29 23:10:04 [INFO] - F:\testbeijing\RA25\20210155_APCA_NEG1.pin has 38248 PSMs 2024-07-29 23:10:04 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:11 [INFO] - RT regression using 2397 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:12 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.048 2024-07-29 23:10:14 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:14 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:14 [INFO] - Edited pin file at F:\testbeijing\RA25\20210155_APCA_NEG1_edited.pin 2024-07-29 23:10:14 [INFO] - Processing pin F:\testbeijing\RA26\20210155_APCA_NEG2.pin 2024-07-29 23:10:15 [INFO] - F:\testbeijing\RA26\20210155_APCA_NEG2.pin has 43901 PSMs 2024-07-29 23:10:15 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:22 [INFO] - RT regression using 3179 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:23 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:10:23 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:24 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:24 [INFO] - Edited pin file at F:\testbeijing\RA26\20210155_APCA_NEG2_edited.pin 2024-07-29 23:10:24 [INFO] - Processing pin F:\testbeijing\RA27\20210155_APCA_NEG3.pin 2024-07-29 23:10:25 [INFO] - F:\testbeijing\RA27\20210155_APCA_NEG3.pin has 41269 PSMs 2024-07-29 23:10:25 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:32 [INFO] - RT regression using 2536 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:33 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.044 2024-07-29 23:10:34 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:34 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:35 [INFO] - Edited pin file at F:\testbeijing\RA27\20210155_APCA_NEG3_edited.pin 2024-07-29 23:10:35 [INFO] - Processing pin F:\testbeijing\RA28\20210155_APCA_NEG4.pin 2024-07-29 23:10:35 [INFO] - F:\testbeijing\RA28\20210155_APCA_NEG4.pin has 41057 PSMs 2024-07-29 23:10:35 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:43 [INFO] - RT regression using 2838 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:44 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:10:45 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:45 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:45 [INFO] - Edited pin file at F:\testbeijing\RA28\20210155_APCA_NEG4_edited.pin 2024-07-29 23:10:45 [INFO] - Processing pin F:\testbeijing\RA29\20210155_APCA_NEG5.pin 2024-07-29 23:10:46 [INFO] - F:\testbeijing\RA29\20210155_APCA_NEG5.pin has 40472 PSMs 2024-07-29 23:10:46 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:52 [INFO] - RT regression using 2362 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:10:53 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:10:54 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:55 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:10:55 [INFO] - Edited pin file at F:\testbeijing\RA29\20210155_APCA_NEG5_edited.pin 2024-07-29 23:10:55 [INFO] - Processing pin F:\testbeijing\RA2\20210070_APCA_NEG2.pin 2024-07-29 23:10:55 [INFO] - F:\testbeijing\RA2\20210070_APCA_NEG2.pin has 32425 PSMs 2024-07-29 23:10:55 [INFO] - Processing F:\PXD031498\20210070_APCA_NEG2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:02 [INFO] - RT regression using 2101 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:03 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:11:03 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:03 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:03 [INFO] - Edited pin file at F:\testbeijing\RA2\20210070_APCA_NEG2_edited.pin 2024-07-29 23:11:03 [INFO] - Processing pin F:\testbeijing\RA30\20210155_APCA_NEG6.pin 2024-07-29 23:11:04 [INFO] - F:\testbeijing\RA30\20210155_APCA_NEG6.pin has 40550 PSMs 2024-07-29 23:11:04 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG6.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:11 [INFO] - RT regression using 2622 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:12 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:11:12 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:12 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:13 [INFO] - Edited pin file at F:\testbeijing\RA30\20210155_APCA_NEG6_edited.pin 2024-07-29 23:11:13 [INFO] - Processing pin F:\testbeijing\RA31\20210155_APCA_NEG7.pin 2024-07-29 23:11:13 [INFO] - F:\testbeijing\RA31\20210155_APCA_NEG7.pin has 39237 PSMs 2024-07-29 23:11:13 [INFO] - Processing F:\PXD031498\20210155_APCA_NEG7.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:21 [INFO] - RT regression using 2722 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:22 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:11:23 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:23 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:23 [INFO] - Edited pin file at F:\testbeijing\RA31\20210155_APCA_NEG7_edited.pin 2024-07-29 23:11:24 [INFO] - Processing pin F:\testbeijing\RA32\20210155_APCA_POS1.pin 2024-07-29 23:11:24 [INFO] - F:\testbeijing\RA32\20210155_APCA_POS1.pin has 41111 PSMs 2024-07-29 23:11:24 [INFO] - Processing F:\PXD031498\20210155_APCA_POS1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:31 [INFO] - RT regression using 2588 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:32 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.044 2024-07-29 23:11:33 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:34 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:34 [INFO] - Edited pin file at F:\testbeijing\RA32\20210155_APCA_POS1_edited.pin 2024-07-29 23:11:34 [INFO] - Processing pin F:\testbeijing\RA33\20210155_APCA_POS10.pin 2024-07-29 23:11:34 [INFO] - F:\testbeijing\RA33\20210155_APCA_POS10.pin has 38472 PSMs 2024-07-29 23:11:34 [INFO] - Processing F:\PXD031498\20210155_APCA_POS10.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:41 [INFO] - RT regression using 2731 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:43 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.034 2024-07-29 23:11:44 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:44 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:44 [INFO] - Edited pin file at F:\testbeijing\RA33\20210155_APCA_POS10_edited.pin 2024-07-29 23:11:45 [INFO] - Processing pin F:\testbeijing\RA34\20210155_APCA_POS11.pin 2024-07-29 23:11:45 [INFO] - F:\testbeijing\RA34\20210155_APCA_POS11.pin has 41753 PSMs 2024-07-29 23:11:45 [INFO] - Processing F:\PXD031498\20210155_APCA_POS11.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:52 [INFO] - RT regression using 2375 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:11:53 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:11:53 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:54 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:11:54 [INFO] - Edited pin file at F:\testbeijing\RA34\20210155_APCA_POS11_edited.pin 2024-07-29 23:11:54 [INFO] - Processing pin F:\testbeijing\RA35\20210155_APCA_POS12.pin 2024-07-29 23:11:54 [INFO] - F:\testbeijing\RA35\20210155_APCA_POS12.pin has 39864 PSMs 2024-07-29 23:11:54 [INFO] - Processing F:\PXD031498\20210155_APCA_POS12.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:01 [INFO] - RT regression using 2592 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:03 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:12:03 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:03 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:03 [INFO] - Edited pin file at F:\testbeijing\RA35\20210155_APCA_POS12_edited.pin 2024-07-29 23:12:04 [INFO] - Processing pin F:\testbeijing\RA36\20210155_APCA_POS13.pin 2024-07-29 23:12:04 [INFO] - F:\testbeijing\RA36\20210155_APCA_POS13.pin has 40898 PSMs 2024-07-29 23:12:04 [INFO] - Processing F:\PXD031498\20210155_APCA_POS13.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:11 [INFO] - RT regression using 2568 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:12 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:12:13 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:13 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:13 [INFO] - Edited pin file at F:\testbeijing\RA36\20210155_APCA_POS13_edited.pin 2024-07-29 23:12:14 [INFO] - Processing pin F:\testbeijing\RA37\20210155_APCA_POS14.pin 2024-07-29 23:12:14 [INFO] - F:\testbeijing\RA37\20210155_APCA_POS14.pin has 39530 PSMs 2024-07-29 23:12:14 [INFO] - Processing F:\PXD031498\20210155_APCA_POS14.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:21 [INFO] - RT regression using 2633 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:22 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:12:22 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:22 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:23 [INFO] - Edited pin file at F:\testbeijing\RA37\20210155_APCA_POS14_edited.pin 2024-07-29 23:12:23 [INFO] - Processing pin F:\testbeijing\RA38\20210155_APCA_POS15.pin 2024-07-29 23:12:23 [INFO] - F:\testbeijing\RA38\20210155_APCA_POS15.pin has 40917 PSMs 2024-07-29 23:12:23 [INFO] - Processing F:\PXD031498\20210155_APCA_POS15.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:30 [INFO] - RT regression using 2557 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:31 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:12:32 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:32 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:32 [INFO] - Edited pin file at F:\testbeijing\RA38\20210155_APCA_POS15_edited.pin 2024-07-29 23:12:32 [INFO] - Processing pin F:\testbeijing\RA39\20210155_APCA_POS16.pin 2024-07-29 23:12:33 [INFO] - F:\testbeijing\RA39\20210155_APCA_POS16.pin has 37835 PSMs 2024-07-29 23:12:33 [INFO] - Processing F:\PXD031498\20210155_APCA_POS16.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:40 [INFO] - RT regression using 2215 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:41 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:12:41 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:42 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:42 [INFO] - Edited pin file at F:\testbeijing\RA39\20210155_APCA_POS16_edited.pin 2024-07-29 23:12:42 [INFO] - Processing pin F:\testbeijing\RA3\20210070_APCA_NEG3.pin 2024-07-29 23:12:42 [INFO] - F:\testbeijing\RA3\20210070_APCA_NEG3.pin has 35721 PSMs 2024-07-29 23:12:42 [INFO] - Processing F:\PXD031498\20210070_APCA_NEG3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:49 [INFO] - RT regression using 2404 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:12:50 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:12:50 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:50 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:51 [INFO] - Edited pin file at F:\testbeijing\RA3\20210070_APCA_NEG3_edited.pin 2024-07-29 23:12:51 [INFO] - Processing pin F:\testbeijing\RA40\20210155_APCA_POS17.pin 2024-07-29 23:12:51 [INFO] - F:\testbeijing\RA40\20210155_APCA_POS17.pin has 43089 PSMs 2024-07-29 23:12:51 [INFO] - Processing F:\PXD031498\20210155_APCA_POS17.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:12:59 [INFO] - RT regression using 2875 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:00 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:13:01 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:01 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:01 [INFO] - Edited pin file at F:\testbeijing\RA40\20210155_APCA_POS17_edited.pin 2024-07-29 23:13:01 [INFO] - Processing pin F:\testbeijing\RA41\20210155_APCA_POS18.pin 2024-07-29 23:13:02 [INFO] - F:\testbeijing\RA41\20210155_APCA_POS18.pin has 40863 PSMs 2024-07-29 23:13:02 [INFO] - Processing F:\PXD031498\20210155_APCA_POS18.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:09 [INFO] - RT regression using 2891 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:10 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:13:11 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:11 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:11 [INFO] - Edited pin file at F:\testbeijing\RA41\20210155_APCA_POS18_edited.pin 2024-07-29 23:13:11 [INFO] - Processing pin F:\testbeijing\RA42\20210155_APCA_POS19.pin 2024-07-29 23:13:11 [INFO] - F:\testbeijing\RA42\20210155_APCA_POS19.pin has 38058 PSMs 2024-07-29 23:13:11 [INFO] - Processing F:\PXD031498\20210155_APCA_POS19.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:19 [INFO] - RT regression using 2596 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:20 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:13:21 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:21 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:21 [INFO] - Edited pin file at F:\testbeijing\RA42\20210155_APCA_POS19_edited.pin 2024-07-29 23:13:21 [INFO] - Processing pin F:\testbeijing\RA43\20210155_APCA_POS2.pin 2024-07-29 23:13:21 [INFO] - F:\testbeijing\RA43\20210155_APCA_POS2.pin has 39392 PSMs 2024-07-29 23:13:21 [INFO] - Processing F:\PXD031498\20210155_APCA_POS2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:28 [INFO] - RT regression using 2566 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:29 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:13:30 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:30 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:30 [INFO] - Edited pin file at F:\testbeijing\RA43\20210155_APCA_POS2_edited.pin 2024-07-29 23:13:30 [INFO] - Processing pin F:\testbeijing\RA44\20210155_APCA_POS20.pin 2024-07-29 23:13:31 [INFO] - F:\testbeijing\RA44\20210155_APCA_POS20.pin has 42364 PSMs 2024-07-29 23:13:31 [INFO] - Processing F:\PXD031498\20210155_APCA_POS20.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:38 [INFO] - RT regression using 2796 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:39 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.124 2024-07-29 23:13:41 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:41 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:41 [INFO] - Edited pin file at F:\testbeijing\RA44\20210155_APCA_POS20_edited.pin 2024-07-29 23:13:42 [INFO] - Processing pin F:\testbeijing\RA45\20210155_APCA_POS21.pin 2024-07-29 23:13:42 [INFO] - F:\testbeijing\RA45\20210155_APCA_POS21.pin has 42421 PSMs 2024-07-29 23:13:42 [INFO] - Processing F:\PXD031498\20210155_APCA_POS21.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:50 [INFO] - RT regression using 2617 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:13:51 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:13:52 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:52 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:13:52 [INFO] - Edited pin file at F:\testbeijing\RA45\20210155_APCA_POS21_edited.pin 2024-07-29 23:13:52 [INFO] - Processing pin F:\testbeijing\RA46\20210155_APCA_POS22.pin 2024-07-29 23:13:53 [INFO] - F:\testbeijing\RA46\20210155_APCA_POS22.pin has 40654 PSMs 2024-07-29 23:13:53 [INFO] - Processing F:\PXD031498\20210155_APCA_POS22.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:00 [INFO] - RT regression using 2597 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:01 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:02 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:02 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:02 [INFO] - Edited pin file at F:\testbeijing\RA46\20210155_APCA_POS22_edited.pin 2024-07-29 23:14:02 [INFO] - Processing pin F:\testbeijing\RA47\20210155_APCA_POS23.pin 2024-07-29 23:14:02 [INFO] - F:\testbeijing\RA47\20210155_APCA_POS23.pin has 37556 PSMs 2024-07-29 23:14:02 [INFO] - Processing F:\PXD031498\20210155_APCA_POS23.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:09 [INFO] - RT regression using 2457 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:10 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:11 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:11 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:11 [INFO] - Edited pin file at F:\testbeijing\RA47\20210155_APCA_POS23_edited.pin 2024-07-29 23:14:11 [INFO] - Processing pin F:\testbeijing\RA48\20210155_APCA_POS24.pin 2024-07-29 23:14:12 [INFO] - F:\testbeijing\RA48\20210155_APCA_POS24.pin has 41962 PSMs 2024-07-29 23:14:12 [INFO] - Processing F:\PXD031498\20210155_APCA_POS24.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:19 [INFO] - RT regression using 2538 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:20 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:20 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:21 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:21 [INFO] - Edited pin file at F:\testbeijing\RA48\20210155_APCA_POS24_edited.pin 2024-07-29 23:14:21 [INFO] - Processing pin F:\testbeijing\RA49\20210155_APCA_POS25.pin 2024-07-29 23:14:21 [INFO] - F:\testbeijing\RA49\20210155_APCA_POS25.pin has 40951 PSMs 2024-07-29 23:14:21 [INFO] - Processing F:\PXD031498\20210155_APCA_POS25.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:29 [INFO] - RT regression using 2430 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:30 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:30 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:30 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:30 [INFO] - Edited pin file at F:\testbeijing\RA49\20210155_APCA_POS25_edited.pin 2024-07-29 23:14:31 [INFO] - Processing pin F:\testbeijing\RA4\20210070_APCA_POS1.pin 2024-07-29 23:14:31 [INFO] - F:\testbeijing\RA4\20210070_APCA_POS1.pin has 38273 PSMs 2024-07-29 23:14:31 [INFO] - Processing F:\PXD031498\20210070_APCA_POS1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:38 [INFO] - RT regression using 2521 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:38 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:39 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:39 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:39 [INFO] - Edited pin file at F:\testbeijing\RA4\20210070_APCA_POS1_edited.pin 2024-07-29 23:14:39 [INFO] - Processing pin F:\testbeijing\RA50\20210155_APCA_POS26.pin 2024-07-29 23:14:39 [INFO] - F:\testbeijing\RA50\20210155_APCA_POS26.pin has 36529 PSMs 2024-07-29 23:14:39 [INFO] - Processing F:\PXD031498\20210155_APCA_POS26.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:47 [INFO] - RT regression using 2561 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:48 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:14:49 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:49 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:49 [INFO] - Edited pin file at F:\testbeijing\RA50\20210155_APCA_POS26_edited.pin 2024-07-29 23:14:49 [INFO] - Processing pin F:\testbeijing\RA51\20210155_APCA_POS27.pin 2024-07-29 23:14:50 [INFO] - F:\testbeijing\RA51\20210155_APCA_POS27.pin has 36215 PSMs 2024-07-29 23:14:50 [INFO] - Processing F:\PXD031498\20210155_APCA_POS27.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:56 [INFO] - RT regression using 2377 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:14:57 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:14:58 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:58 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:14:58 [INFO] - Edited pin file at F:\testbeijing\RA51\20210155_APCA_POS27_edited.pin 2024-07-29 23:14:58 [INFO] - Processing pin F:\testbeijing\RA52\20210155_APCA_POS28.pin 2024-07-29 23:14:58 [INFO] - F:\testbeijing\RA52\20210155_APCA_POS28.pin has 37905 PSMs 2024-07-29 23:14:58 [INFO] - Processing F:\PXD031498\20210155_APCA_POS28.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:06 [INFO] - RT regression using 2771 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:07 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:15:07 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:07 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:07 [INFO] - Edited pin file at F:\testbeijing\RA52\20210155_APCA_POS28_edited.pin 2024-07-29 23:15:08 [INFO] - Processing pin F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pin 2024-07-29 23:15:08 [INFO] - F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001.pin has 37943 PSMs 2024-07-29 23:15:08 [INFO] - Processing F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:15 [INFO] - RT regression using 2859 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:16 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:15:17 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:17 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:18 [INFO] - Edited pin file at F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001_edited.pin 2024-07-29 23:15:18 [INFO] - Processing pin F:\testbeijing\RA54\20210155_APCA_POS3.pin 2024-07-29 23:15:18 [INFO] - F:\testbeijing\RA54\20210155_APCA_POS3.pin has 38857 PSMs 2024-07-29 23:15:18 [INFO] - Processing F:\PXD031498\20210155_APCA_POS3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:25 [INFO] - RT regression using 2715 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:26 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:15:27 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:27 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:27 [INFO] - Edited pin file at F:\testbeijing\RA54\20210155_APCA_POS3_edited.pin 2024-07-29 23:15:27 [INFO] - Processing pin F:\testbeijing\RA55\20210155_APCA_POS4.pin 2024-07-29 23:15:28 [INFO] - F:\testbeijing\RA55\20210155_APCA_POS4.pin has 39597 PSMs 2024-07-29 23:15:28 [INFO] - Processing F:\PXD031498\20210155_APCA_POS4.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:35 [INFO] - RT regression using 2685 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:36 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.018 2024-07-29 23:15:36 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:36 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:37 [INFO] - Edited pin file at F:\testbeijing\RA55\20210155_APCA_POS4_edited.pin 2024-07-29 23:15:37 [INFO] - Processing pin F:\testbeijing\RA56\20210155_APCA_POS5.pin 2024-07-29 23:15:37 [INFO] - F:\testbeijing\RA56\20210155_APCA_POS5.pin has 39388 PSMs 2024-07-29 23:15:37 [INFO] - Processing F:\PXD031498\20210155_APCA_POS5.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:44 [INFO] - RT regression using 2705 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:45 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:15:46 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:46 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:46 [INFO] - Edited pin file at F:\testbeijing\RA56\20210155_APCA_POS5_edited.pin 2024-07-29 23:15:46 [INFO] - Processing pin F:\testbeijing\RA57\20210155_APCA_POS6.pin 2024-07-29 23:15:47 [INFO] - F:\testbeijing\RA57\20210155_APCA_POS6.pin has 38890 PSMs 2024-07-29 23:15:47 [INFO] - Processing F:\PXD031498\20210155_APCA_POS6.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:54 [INFO] - RT regression using 2529 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:15:55 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:15:55 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:56 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:15:56 [INFO] - Edited pin file at F:\testbeijing\RA57\20210155_APCA_POS6_edited.pin 2024-07-29 23:15:56 [INFO] - Processing pin F:\testbeijing\RA58\20210155_APCA_POS7.pin 2024-07-29 23:15:56 [INFO] - F:\testbeijing\RA58\20210155_APCA_POS7.pin has 39865 PSMs 2024-07-29 23:15:56 [INFO] - Processing F:\PXD031498\20210155_APCA_POS7.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:04 [INFO] - RT regression using 2687 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:05 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.036 2024-07-29 23:16:06 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:06 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:07 [INFO] - Edited pin file at F:\testbeijing\RA58\20210155_APCA_POS7_edited.pin 2024-07-29 23:16:07 [INFO] - Processing pin F:\testbeijing\RA59\20210155_APCA_POS8.pin 2024-07-29 23:16:07 [INFO] - F:\testbeijing\RA59\20210155_APCA_POS8.pin has 39691 PSMs 2024-07-29 23:16:07 [INFO] - Processing F:\PXD031498\20210155_APCA_POS8.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:15 [INFO] - RT regression using 2610 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:16 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:16:16 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:16 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:17 [INFO] - Edited pin file at F:\testbeijing\RA59\20210155_APCA_POS8_edited.pin 2024-07-29 23:16:17 [INFO] - Processing pin F:\testbeijing\RA5\20210070_APCA_POS2.pin 2024-07-29 23:16:17 [INFO] - F:\testbeijing\RA5\20210070_APCA_POS2.pin has 40410 PSMs 2024-07-29 23:16:17 [INFO] - Processing F:\PXD031498\20210070_APCA_POS2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:24 [INFO] - RT regression using 2535 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:25 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:16:25 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:26 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:26 [INFO] - Edited pin file at F:\testbeijing\RA5\20210070_APCA_POS2_edited.pin 2024-07-29 23:16:26 [INFO] - Processing pin F:\testbeijing\RA60\20210155_APCA_POS9.pin 2024-07-29 23:16:27 [INFO] - F:\testbeijing\RA60\20210155_APCA_POS9.pin has 39269 PSMs 2024-07-29 23:16:27 [INFO] - Processing F:\PXD031498\20210155_APCA_POS9.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:34 [INFO] - RT regression using 2538 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:35 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.026 2024-07-29 23:16:36 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:36 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:36 [INFO] - Edited pin file at F:\testbeijing\RA60\20210155_APCA_POS9_edited.pin 2024-07-29 23:16:37 [INFO] - Processing pin F:\testbeijing\RA6\20210070_APCA_POS3.pin 2024-07-29 23:16:37 [INFO] - F:\testbeijing\RA6\20210070_APCA_POS3.pin has 43811 PSMs 2024-07-29 23:16:37 [INFO] - Processing F:\PXD031498\20210070_APCA_POS3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:45 [INFO] - RT regression using 2593 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:46 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.048 2024-07-29 23:16:47 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:47 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:48 [INFO] - Edited pin file at F:\testbeijing\RA6\20210070_APCA_POS3_edited.pin 2024-07-29 23:16:48 [INFO] - Processing pin F:\testbeijing\RA7\20210105_ACPA_N_1.pin 2024-07-29 23:16:48 [INFO] - F:\testbeijing\RA7\20210105_ACPA_N_1.pin has 39814 PSMs 2024-07-29 23:16:48 [INFO] - Processing F:\PXD031498\20210105_ACPA_N_1.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:56 [INFO] - RT regression using 2946 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:16:57 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:16:57 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:57 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:16:58 [INFO] - Edited pin file at F:\testbeijing\RA7\20210105_ACPA_N_1_edited.pin 2024-07-29 23:16:58 [INFO] - Processing pin F:\testbeijing\RA8\20210105_ACPA_N_2.pin 2024-07-29 23:16:58 [INFO] - F:\testbeijing\RA8\20210105_ACPA_N_2.pin has 36800 PSMs 2024-07-29 23:16:58 [INFO] - Processing F:\PXD031498\20210105_ACPA_N_2.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:05 [INFO] - RT regression using 2616 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:17:06 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.01 2024-07-29 23:17:06 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:06 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:07 [INFO] - Edited pin file at F:\testbeijing\RA8\20210105_ACPA_N_2_edited.pin 2024-07-29 23:17:07 [INFO] - Processing pin F:\testbeijing\RA9\20210105_ACPA_N_3.pin 2024-07-29 23:17:07 [INFO] - F:\testbeijing\RA9\20210105_ACPA_N_3.pin has 34311 PSMs 2024-07-29 23:17:07 [INFO] - Processing F:\PXD031498\20210105_ACPA_N_3.mzML ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:14 [INFO] - RT regression using 2483 PSMs Iteration 1...2...3...4...5... 2024-07-29 23:17:15 [INFO] - Best average bandwidth for mass from grid search of 0.01,0.05,0.1,0.2 after 5 iterations is 0.048 2024-07-29 23:17:16 [INFO] - Calculating features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:16 [INFO] - Writing features ...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% 2024-07-29 23:17:16 [INFO] - Edited pin file at F:\testbeijing\RA9\20210105_ACPA_N_3_edited.pin 2024-07-29 23:17:16 [INFO] - Feature calculation, edited pin writing, and QC plot generation done in 895073 ms Process 'MSBooster' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_9_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_9_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_9_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_9_edited.pin Started Mon Jul 29 23:17:17 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_9_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 33954 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 31969 positives and 1985 negatives, size ratio=16.1053 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7362 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7316 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7550 training set positives with q<0.01 in that direction. Found 11136 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6470 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11483 PSMs with q<0.01 Iteration 2: Estimated 11594 PSMs with q<0.01 Iteration 3: Estimated 11705 PSMs with q<0.01 Iteration 4: Estimated 11794 PSMs with q<0.01 Iteration 5: Estimated 11849 PSMs with q<0.01 Iteration 6: Estimated 11891 PSMs with q<0.01 Iteration 7: Estimated 11885 PSMs with q<0.01 Iteration 8: Estimated 11858 PSMs with q<0.01 Iteration 9: Estimated 11840 PSMs with q<0.01 Iteration 10: Estimated 11841 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.4248 -0.3420 -0.5540 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0426 -0.1374 -0.1715 isotope_error_0 0.0338 0.1441 0.1304 isotope_error_1 -0.0903 -0.0008 0.0562 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6285 -1.6354 -1.1145 log10_evalue -0.7740 -2.0802 -1.3345 hyperscore 0.7905 0.5456 0.8072 delta_hyperscore 1.2732 2.1413 1.7909 matched_ion_num -1.0975 -0.5679 -0.5229 complementary_ions -0.5524 -0.2552 -0.2184 ion_series 0.0055 0.0597 0.3133 weighted_average_abs_fragment_ppm 0.0109 0.0634 0.0407 length_7 0.2561 0.0886 0.0954 length_8 -0.0015 0.0095 0.0939 length_9_30 -0.1079 -0.0611 -0.1508 length_31 0.0000 0.0000 0.0000 ntt -0.1642 -0.0582 0.0620 nmc 0.0000 0.0000 0.0000 charge_1 -0.0945 0.0558 -0.0014 charge_2 0.1131 -0.0302 0.0167 charge_3 -0.0531 -0.0678 -0.0116 charge_4 0.0278 0.0202 -0.0719 charge_5 0.0063 -0.0014 0.0414 charge_6 0.0032 0.0047 0.0032 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0081 0.2092 0.2594 15.9949M 0.3303 0.2243 0.1791 pred_RT_real_units 1.5717 1.1184 1.7228 unweighted_spectral_entropy 0.0463 0.0492 0.1707 delta_RT_loess -0.4137 -0.5917 -0.4153 m0 Found 11489 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 31969 target PSMs and 1985 decoy PSMs. Calculating q values. Final list yields 11505 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5130 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_9_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_9_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_9_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_9_edited.pin Started Mon Jul 29 23:17:23 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_9_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36185 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34077 positives and 2108 negatives, size ratio=16.1656 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8346 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8414 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8302 training set positives with q<0.01 in that direction. Found 12500 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8310 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12998 PSMs with q<0.01 Iteration 2: Estimated 13153 PSMs with q<0.01 Iteration 3: Estimated 13197 PSMs with q<0.01 Iteration 4: Estimated 13159 PSMs with q<0.01 Iteration 5: Estimated 13210 PSMs with q<0.01 Iteration 6: Estimated 13264 PSMs with q<0.01 Iteration 7: Estimated 13232 PSMs with q<0.01 Iteration 8: Estimated 13246 PSMs with q<0.01 Iteration 9: Estimated 13273 PSMs with q<0.01 Iteration 10: Estimated 13297 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3213 -0.0645 -0.0603 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0858 -0.0944 0.0092 isotope_error_0 -0.0415 0.0284 0.0113 isotope_error_1 0.1511 0.0808 -0.0241 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7254 -1.0208 -0.7405 log10_evalue -0.1372 -1.4982 -0.4100 hyperscore 0.9200 0.9157 1.1427 delta_hyperscore 0.8753 1.3549 1.0557 matched_ion_num -0.7658 -0.6940 -0.8135 complementary_ions -0.3644 -0.2681 -0.4111 ion_series 0.0387 -0.0106 -0.0099 weighted_average_abs_fragment_ppm -0.0219 -0.0343 0.0157 length_7 -0.0017 0.0608 0.0140 length_8 0.0614 0.1057 0.0766 length_9_30 -0.0622 -0.1429 -0.1024 length_31 0.0000 0.0000 0.0000 ntt 0.1058 0.0878 0.0195 nmc 0.0000 0.0000 0.0000 charge_1 -0.0766 -0.0233 -0.1668 charge_2 0.1111 0.0424 0.1498 charge_3 -0.0536 -0.0558 -0.0038 charge_4 -0.0676 -0.0181 0.0293 charge_5 0.0807 0.1249 0.1615 charge_6 0.0036 0.0055 0.0048 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0093 0.1158 0.0015 15.9949M 0.0979 0.2547 0.1669 pred_RT_real_units 1.5587 1.8109 1.7486 unweighted_spectral_entropy -0.0201 -0.0589 -0.0500 delta_RT_loess -0.3433 -0.5229 -0.4551 m0 Found 13111 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34077 target PSMs and 2108 decoy PSMs. Calculating q values. Final list yields 13111 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7640 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_3_edited.pin Started Mon Jul 29 23:17:30 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40812 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38476 positives and 2336 negatives, size ratio=16.4709 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8381 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 8264 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8453 training set positives with q<0.01 in that direction. Found 12327 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6050 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12900 PSMs with q<0.01 Iteration 2: Estimated 13032 PSMs with q<0.01 Iteration 3: Estimated 13097 PSMs with q<0.01 Iteration 4: Estimated 13118 PSMs with q<0.01 Iteration 5: Estimated 13119 PSMs with q<0.01 Iteration 6: Estimated 13111 PSMs with q<0.01 Iteration 7: Estimated 13137 PSMs with q<0.01 Iteration 8: Estimated 13131 PSMs with q<0.01 Iteration 9: Estimated 13139 PSMs with q<0.01 Iteration 10: Estimated 13157 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.0661 -0.1065 -0.1281 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0959 -0.0045 -0.0631 isotope_error_0 -0.0438 -0.0265 -0.0233 isotope_error_1 0.1614 0.0350 0.1001 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.5022 -2.1389 -1.8431 log10_evalue -2.2847 -1.5699 -0.5183 hyperscore 1.0776 0.9670 1.5719 delta_hyperscore 2.0065 0.8447 0.8741 matched_ion_num -0.7836 -0.7709 -0.8153 complementary_ions 0.0674 0.5515 -0.1508 ion_series -0.4541 -0.0862 -0.4232 weighted_average_abs_fragment_ppm -0.0949 -0.1023 -0.1189 length_7 -0.0203 -0.0124 -0.0488 length_8 0.0249 0.1334 0.0070 length_9_30 0.0139 -0.1094 0.0556 length_31 0.0000 0.0000 0.0000 ntt 0.0914 0.1785 0.2091 nmc 0.0000 0.0000 0.0000 charge_1 0.0370 0.0637 0.0713 charge_2 -0.0820 -0.0240 -0.0729 charge_3 0.0789 -0.0318 0.1169 charge_4 0.0112 -0.0734 -0.2118 charge_5 0.0317 -0.0622 -0.0334 charge_6 0.0030 0.0167 0.0027 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0545 -0.0693 -0.0619 15.9949M -0.2418 0.2595 0.1471 pred_RT_real_units 1.6261 1.2586 1.6559 unweighted_spectral_entropy 0.1184 0.1680 0.2597 delta_RT_loess -0.2109 -0.1282 -0.1911 m0 Found 12788 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38476 target PSMs and 2336 decoy PSMs. Calculating q values. Final list yields 12791 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.3100 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_1_edited.pin Started Mon Jul 29 23:17:36 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 35861 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33802 positives and 2059 negatives, size ratio=16.4167 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7565 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7554 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7701 training set positives with q<0.01 in that direction. Found 11335 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5570 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11665 PSMs with q<0.01 Iteration 2: Estimated 11755 PSMs with q<0.01 Iteration 3: Estimated 11824 PSMs with q<0.01 Iteration 4: Estimated 11848 PSMs with q<0.01 Iteration 5: Estimated 11850 PSMs with q<0.01 Iteration 6: Estimated 11888 PSMs with q<0.01 Iteration 7: Estimated 11890 PSMs with q<0.01 Iteration 8: Estimated 11932 PSMs with q<0.01 Iteration 9: Estimated 11947 PSMs with q<0.01 Iteration 10: Estimated 11962 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0596 -0.0639 -0.1930 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0861 -0.1162 0.0041 isotope_error_0 0.1781 0.0055 0.0205 isotope_error_1 -0.0995 0.1296 -0.0279 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2721 -0.9049 -2.0828 log10_evalue -0.8420 -0.8505 -0.7972 hyperscore 1.0533 1.3417 0.9993 delta_hyperscore 0.7839 0.9925 0.8576 matched_ion_num -0.7541 -0.5667 -0.8844 complementary_ions -0.2674 -0.4322 -0.6669 ion_series -0.0233 -0.1597 0.0365 weighted_average_abs_fragment_ppm -0.0349 -0.0357 -0.0625 length_7 0.1422 0.1959 0.1758 length_8 0.0704 0.0345 0.1522 length_9_30 -0.1362 -0.1213 -0.2355 length_31 0.0000 0.0000 0.0000 ntt 0.2049 -0.0540 -0.1833 nmc 0.0000 0.0000 0.0000 charge_1 -0.0394 -0.1279 -0.1295 charge_2 0.0802 0.0883 0.1205 charge_3 -0.0455 0.0583 -0.0691 charge_4 -0.1194 0.0115 0.1195 charge_5 0.0837 0.0960 0.1301 charge_6 0.0157 0.0069 0.0048 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0183 0.0314 0.0856 15.9949M 0.1143 -0.1432 0.1255 pred_RT_real_units 1.6359 1.5374 1.6029 unweighted_spectral_entropy -0.0384 -0.0824 -0.1059 delta_RT_loess -0.4808 -0.5191 -0.3407 m0 Found 11843 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33802 target PSMs and 2059 decoy PSMs. Calculating q values. Final list yields 11850 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4260 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS4_edited.pin Started Mon Jul 29 23:17:43 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39597 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37054 positives and 2543 negatives, size ratio=14.571 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7289 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7408 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7330 training set positives with q<0.01 in that direction. Found 10995 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6420 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11540 PSMs with q<0.01 Iteration 2: Estimated 11772 PSMs with q<0.01 Iteration 3: Estimated 11913 PSMs with q<0.01 Iteration 4: Estimated 12024 PSMs with q<0.01 Iteration 5: Estimated 12132 PSMs with q<0.01 Iteration 6: Estimated 12186 PSMs with q<0.01 Iteration 7: Estimated 12234 PSMs with q<0.01 Iteration 8: Estimated 12276 PSMs with q<0.01 Iteration 9: Estimated 12300 PSMs with q<0.01 Iteration 10: Estimated 12277 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1967 -0.3132 -0.1096 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0670 0.0923 0.0542 isotope_error_0 -0.0107 0.0432 0.0295 isotope_error_1 -0.0675 -0.1587 -0.0980 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1905 -1.2980 -1.0387 log10_evalue 0.0427 0.5844 0.6983 hyperscore 0.5241 0.4657 0.4319 delta_hyperscore 1.0580 0.7059 1.0254 matched_ion_num -0.9815 -1.0845 -1.0236 complementary_ions -0.5582 -0.5505 -0.6017 ion_series -0.0301 -0.1186 -0.1600 weighted_average_abs_fragment_ppm -0.0223 -0.0255 0.1316 length_7 0.0151 -0.0190 -0.0147 length_8 -0.0112 -0.0512 -0.0389 length_9_30 0.0154 0.0919 -0.0088 length_31 0.0000 0.0000 0.0000 ntt -0.1139 -0.0609 0.0265 nmc 0.0000 0.0000 0.0000 charge_1 0.0371 -0.0282 0.0326 charge_2 0.0559 0.0186 0.0007 charge_3 -0.0505 0.0755 -0.0815 charge_4 -0.1283 0.0248 -0.0469 charge_5 -0.1953 -0.1934 0.1062 charge_6 0.0404 -0.0033 0.0165 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.1175 -0.0048 -0.1249 15.9949M 0.2622 0.1101 0.2320 pred_RT_real_units 1.4727 1.4266 1.3531 unweighted_spectral_entropy 0.3171 0.1118 0.2092 delta_RT_loess -0.5417 -0.5364 -0.4322 m0 Found 11769 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37054 target PSMs and 2543 decoy PSMs. Calculating q values. Final list yields 11808 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9910 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_5_edited.pin Started Mon Jul 29 23:17:50 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_N_5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34087 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 32274 positives and 1813 negatives, size ratio=17.8014 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8679 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8676 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 9014 training set positives with q<0.01 in that direction. Found 13160 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6820 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13875 PSMs with q<0.01 Iteration 2: Estimated 14103 PSMs with q<0.01 Iteration 3: Estimated 14230 PSMs with q<0.01 Iteration 4: Estimated 14300 PSMs with q<0.01 Iteration 5: Estimated 14285 PSMs with q<0.01 Iteration 6: Estimated 14334 PSMs with q<0.01 Iteration 7: Estimated 14360 PSMs with q<0.01 Iteration 8: Estimated 14361 PSMs with q<0.01 Iteration 9: Estimated 14349 PSMs with q<0.01 Iteration 10: Estimated 14376 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3360 -0.4034 -0.3154 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0090 -0.0528 -0.0654 isotope_error_0 -0.0192 -0.0306 -0.0144 isotope_error_1 0.0334 0.0996 0.0959 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2893 -1.3571 -1.5934 log10_evalue -3.8761 -2.4628 -1.1247 hyperscore 1.0589 0.9639 0.5645 delta_hyperscore 4.0532 2.6639 1.5545 matched_ion_num -0.6708 -0.8548 -0.8022 complementary_ions -0.4918 -0.6038 -0.1810 ion_series 0.0444 -0.2235 -0.0420 weighted_average_abs_fragment_ppm 0.0244 0.0313 0.0459 length_7 0.0905 0.0828 0.1303 length_8 0.1214 0.1334 0.0185 length_9_30 -0.2070 -0.2198 -0.1161 length_31 0.0000 0.0000 0.0000 ntt 0.2522 0.0683 -0.0422 nmc 0.0000 0.0000 0.0000 charge_1 -0.0050 -0.0534 0.0138 charge_2 0.0500 0.0400 -0.0044 charge_3 -0.1137 -0.0134 -0.0333 charge_4 0.0040 0.0709 -0.0173 charge_5 0.0189 0.0825 0.0891 charge_6 -0.0003 0.0015 0.0001 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2380 0.0963 0.1008 15.9949M 0.3650 0.3381 0.2901 pred_RT_real_units 1.6762 1.5942 1.0462 unweighted_spectral_entropy 0.0763 0.0687 -0.0223 delta_RT_loess 0.0358 -0.1953 -0.0111 m0 Found 14037 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 32274 target PSMs and 1813 decoy PSMs. Calculating q values. Final list yields 14038 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.2070 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG4_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG4_edited.pin Started Mon Jul 29 23:17:57 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41057 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38478 positives and 2579 negatives, size ratio=14.9197 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7470 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7664 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7662 training set positives with q<0.01 in that direction. Found 11397 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6240 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11801 PSMs with q<0.01 Iteration 2: Estimated 11928 PSMs with q<0.01 Iteration 3: Estimated 12020 PSMs with q<0.01 Iteration 4: Estimated 12130 PSMs with q<0.01 Iteration 5: Estimated 12165 PSMs with q<0.01 Iteration 6: Estimated 12174 PSMs with q<0.01 Iteration 7: Estimated 12214 PSMs with q<0.01 Iteration 8: Estimated 12226 PSMs with q<0.01 Iteration 9: Estimated 12303 PSMs with q<0.01 Iteration 10: Estimated 12320 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0420 -0.2368 -0.2933 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0405 -0.0254 -0.0679 isotope_error_0 0.0490 0.0148 0.0840 isotope_error_1 -0.0074 0.0134 -0.0146 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6217 -1.0295 -0.8285 log10_evalue 0.4159 -0.6220 -1.1432 hyperscore 0.9257 0.5050 0.9418 delta_hyperscore 0.5214 1.2299 1.9574 matched_ion_num -0.8550 -0.4457 -0.7110 complementary_ions -0.8565 0.0004 -0.5088 ion_series -0.4157 -0.0179 -0.1708 weighted_average_abs_fragment_ppm 0.0302 -0.0164 0.0072 length_7 0.1448 0.0795 0.1072 length_8 0.0873 0.0808 0.0899 length_9_30 -0.2289 -0.1500 -0.1936 length_31 0.0000 0.0000 0.0000 ntt 0.2971 -0.0202 0.2624 nmc 0.0000 0.0000 0.0000 charge_1 0.1968 0.0083 0.0440 charge_2 -0.1882 -0.0447 0.0007 charge_3 -0.0363 0.0926 -0.0550 charge_4 -0.1093 -0.0862 -0.1397 charge_5 0.2147 0.0949 0.1317 charge_6 0.0458 -0.0063 0.0196 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0735 -0.1095 0.1570 15.9949M 0.3575 0.2710 0.3094 pred_RT_real_units 1.5903 1.0237 1.6844 unweighted_spectral_entropy 0.1959 0.2235 0.1270 delta_RT_loess -0.6153 -0.6987 -0.9093 m0 Found 11811 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38478 target PSMs and 2579 decoy PSMs. Calculating q values. Final list yields 11821 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.0100 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC10_percolator_target_psms.tsv --decoy-results-psms 20210155_HC10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC10_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC10_percolator_target_psms.tsv --decoy-results-psms 20210155_HC10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC10_edited.pin Started Mon Jul 29 23:18:04 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC10_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39400 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36865 positives and 2535 negatives, size ratio=14.5424 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6942 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6958 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6560 training set positives with q<0.01 in that direction. Found 10171 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7040 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10725 PSMs with q<0.01 Iteration 2: Estimated 10887 PSMs with q<0.01 Iteration 3: Estimated 10959 PSMs with q<0.01 Iteration 4: Estimated 10966 PSMs with q<0.01 Iteration 5: Estimated 11011 PSMs with q<0.01 Iteration 6: Estimated 11029 PSMs with q<0.01 Iteration 7: Estimated 11066 PSMs with q<0.01 Iteration 8: Estimated 11068 PSMs with q<0.01 Iteration 9: Estimated 11070 PSMs with q<0.01 Iteration 10: Estimated 11069 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2849 -0.4874 -0.5619 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1328 -0.0881 -0.1633 isotope_error_0 -0.0580 -0.0170 -0.0398 isotope_error_1 0.2231 0.1238 0.2388 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4158 -1.4397 -1.3740 log10_evalue -1.3062 -1.8769 -0.5657 hyperscore 0.9235 0.6660 0.4670 delta_hyperscore 1.7212 1.7440 0.6981 matched_ion_num -0.9645 -0.7594 -0.7648 complementary_ions -0.4865 -0.1712 0.0807 ion_series 0.0345 -0.0537 0.1445 weighted_average_abs_fragment_ppm -0.0188 -0.0624 -0.0087 length_7 0.0422 0.1457 0.1442 length_8 -0.0305 -0.0393 0.0056 length_9_30 0.0184 -0.0187 -0.0967 length_31 0.0000 0.0000 0.0000 ntt 0.3695 0.2021 0.2526 nmc 0.0000 0.0000 0.0000 charge_1 0.0746 0.1007 0.0332 charge_2 -0.0516 -0.0462 0.0196 charge_3 0.0534 -0.0735 -0.0448 charge_4 -0.1141 -0.1493 -0.0739 charge_5 -0.1186 0.1026 -0.0594 charge_6 -0.0146 0.1329 -0.0102 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0238 0.0548 0.0585 15.9949M 0.0393 0.4051 0.4342 pred_RT_real_units 2.0786 1.6415 1.8583 unweighted_spectral_entropy -0.1590 0.0080 0.1251 delta_RT_loess -1.1494 -1.0642 -1.2602 m0 Found 10804 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36865 target PSMs and 2535 decoy PSMs. Calculating q values. Final list yields 10805 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.0770 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC16_percolator_target_psms.tsv --decoy-results-psms 20210155_HC16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC16_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC16_percolator_target_psms.tsv --decoy-results-psms 20210155_HC16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC16_edited.pin Started Mon Jul 29 23:18:19 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC16_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40491 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37793 positives and 2698 negatives, size ratio=14.0078 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6917 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7030 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6938 training set positives with q<0.01 in that direction. Found 10443 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7130 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10738 PSMs with q<0.01 Iteration 2: Estimated 10907 PSMs with q<0.01 Iteration 3: Estimated 10992 PSMs with q<0.01 Iteration 4: Estimated 11076 PSMs with q<0.01 Iteration 5: Estimated 11105 PSMs with q<0.01 Iteration 6: Estimated 11133 PSMs with q<0.01 Iteration 7: Estimated 11166 PSMs with q<0.01 Iteration 8: Estimated 11175 PSMs with q<0.01 Iteration 9: Estimated 11193 PSMs with q<0.01 Iteration 10: Estimated 11212 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2544 -0.2552 -0.1941 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1012 -0.0470 0.0158 isotope_error_0 0.1515 0.0703 0.0812 isotope_error_1 -0.0516 -0.0239 -0.1120 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.8542 -1.0784 -1.2111 log10_evalue -1.1983 0.0394 0.1298 hyperscore 0.6022 0.3356 0.6877 delta_hyperscore 1.6762 0.7710 0.8679 matched_ion_num -0.5500 -0.6405 -0.6570 complementary_ions -0.2136 -0.6158 -0.6523 ion_series 0.0326 -0.0239 -0.0110 weighted_average_abs_fragment_ppm 0.0019 -0.0690 -0.0508 length_7 0.1631 0.0531 0.0774 length_8 0.0445 -0.0176 -0.0664 length_9_30 -0.1743 0.0196 0.0552 length_31 0.0000 0.0000 0.0000 ntt 0.0879 0.0702 0.0153 nmc 0.0000 0.0000 0.0000 charge_1 0.0214 0.0100 -0.0266 charge_2 0.0397 -0.0165 0.0298 charge_3 -0.0218 0.0135 0.0544 charge_4 -0.1764 -0.0474 -0.0723 charge_5 0.0044 0.0644 -0.0633 charge_6 0.0165 0.0219 0.0457 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.4243 0.1738 0.1410 15.9949M 0.4804 0.1208 0.0371 pred_RT_real_units 1.9565 1.9772 1.8041 unweighted_spectral_entropy 0.3369 0.1695 0.0773 delta_RT_loess -1.2384 -1.3261 -1.0844 m0 Found 10774 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37793 target PSMs and 2698 decoy PSMs. Calculating q values. Final list yields 10782 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2290 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC3_percolator_target_psms.tsv --decoy-results-psms 20210070_HC3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC3_percolator_target_psms.tsv --decoy-results-psms 20210070_HC3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC3_edited.pin Started Mon Jul 29 23:18:25 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_HC3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37711 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35374 positives and 2337 negatives, size ratio=15.1365 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6911 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6906 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7103 training set positives with q<0.01 in that direction. Found 10396 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7020 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10949 PSMs with q<0.01 Iteration 2: Estimated 11057 PSMs with q<0.01 Iteration 3: Estimated 11112 PSMs with q<0.01 Iteration 4: Estimated 11161 PSMs with q<0.01 Iteration 5: Estimated 11228 PSMs with q<0.01 Iteration 6: Estimated 11259 PSMs with q<0.01 Iteration 7: Estimated 11270 PSMs with q<0.01 Iteration 8: Estimated 11282 PSMs with q<0.01 Iteration 9: Estimated 11317 PSMs with q<0.01 Iteration 10: Estimated 11311 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.4661 -0.4285 -0.2229 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0649 0.0185 0.0297 isotope_error_0 0.0733 0.0777 0.1332 isotope_error_1 -0.1611 -0.1107 -0.1873 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9494 -1.0571 -0.2948 log10_evalue 0.6081 0.2455 0.1787 hyperscore 0.8668 0.7214 1.2041 delta_hyperscore -0.1269 0.2978 0.6661 matched_ion_num -0.5974 -0.6341 -0.5142 complementary_ions -0.0068 -0.5322 -0.3020 ion_series 0.1989 -0.0183 0.0760 weighted_average_abs_fragment_ppm -0.0531 -0.0391 -0.0268 length_7 0.0212 0.0662 0.0382 length_8 0.0372 -0.0028 -0.0073 length_9_30 -0.0377 -0.0261 -0.0058 length_31 0.0000 0.0000 0.0000 ntt 0.3733 0.1689 0.0872 nmc 0.0000 0.0000 0.0000 charge_1 0.1089 0.0697 -0.1120 charge_2 0.0248 0.0860 0.1985 charge_3 -0.1885 -0.2460 -0.1966 charge_4 -0.1295 -0.0602 -0.0254 charge_5 -0.0761 -0.1337 0.1162 charge_6 0.1177 0.0582 0.0679 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0615 0.0388 0.0132 15.9949M 0.4328 0.3416 0.1173 pred_RT_real_units 1.9414 1.5157 1.6601 unweighted_spectral_entropy 0.1588 0.0621 0.0116 delta_RT_loess -0.9415 -0.8139 -0.7297 m0 Found 10971 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35374 target PSMs and 2337 decoy PSMs. Calculating q values. Final list yields 10988 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2610 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_11_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_11_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_11_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_11_edited.pin Started Mon Jul 29 23:18:32 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_11_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38849 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36547 positives and 2302 negatives, size ratio=15.8762 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7629 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7536 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7668 training set positives with q<0.01 in that direction. Found 11440 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7700 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11949 PSMs with q<0.01 Iteration 2: Estimated 12047 PSMs with q<0.01 Iteration 3: Estimated 12190 PSMs with q<0.01 Iteration 4: Estimated 12227 PSMs with q<0.01 Iteration 5: Estimated 12245 PSMs with q<0.01 Iteration 6: Estimated 12275 PSMs with q<0.01 Iteration 7: Estimated 12337 PSMs with q<0.01 Iteration 8: Estimated 12362 PSMs with q<0.01 Iteration 9: Estimated 12371 PSMs with q<0.01 Iteration 10: Estimated 12384 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2433 -0.3864 -0.3197 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0798 -0.1198 -0.1586 isotope_error_0 0.0969 0.0036 0.1078 isotope_error_1 -0.0159 0.1390 0.0658 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1404 -1.5702 -1.5709 log10_evalue 0.2778 -0.7610 -1.2743 hyperscore 1.1478 0.7568 0.4163 delta_hyperscore 0.6814 1.0046 1.8122 matched_ion_num -0.7093 -0.7481 -0.8690 complementary_ions -0.1750 -0.0321 -0.4885 ion_series 0.0469 0.0643 0.1426 weighted_average_abs_fragment_ppm 0.0017 -0.0337 -0.0084 length_7 -0.0251 -0.0624 0.0724 length_8 0.0082 -0.0249 0.0127 length_9_30 0.0045 0.0804 -0.0548 length_31 0.0000 0.0000 0.0000 ntt 0.0076 0.1085 0.0475 nmc 0.0000 0.0000 0.0000 charge_1 0.1263 0.0868 -0.0051 charge_2 -0.1305 -0.1027 -0.0688 charge_3 0.0747 0.0695 0.2132 charge_4 -0.1657 -0.1085 -0.1028 charge_5 0.0452 0.0719 0.0317 charge_6 0.0021 -0.0047 -0.0075 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0551 0.0327 -0.0301 15.9949M 0.4584 0.2259 0.4347 pred_RT_real_units 1.4963 1.5079 1.6814 unweighted_spectral_entropy -0.0004 0.0064 0.0874 delta_RT_loess -0.2992 -0.5040 -0.7261 m0 Found 11969 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36547 target PSMs and 2302 decoy PSMs. Calculating q values. Final list yields 11988 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9260 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS16_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS16_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS16_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS16_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS16_edited.pin Started Mon Jul 29 23:18:39 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS16_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37835 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35293 positives and 2542 negatives, size ratio=13.8839 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 5643 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 5731 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 5919 training set positives with q<0.01 in that direction. Found 8621 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5830 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9143 PSMs with q<0.01 Iteration 2: Estimated 9308 PSMs with q<0.01 Iteration 3: Estimated 9347 PSMs with q<0.01 Iteration 4: Estimated 9461 PSMs with q<0.01 Iteration 5: Estimated 9521 PSMs with q<0.01 Iteration 6: Estimated 9538 PSMs with q<0.01 Iteration 7: Estimated 9577 PSMs with q<0.01 Iteration 8: Estimated 9589 PSMs with q<0.01 Iteration 9: Estimated 9638 PSMs with q<0.01 Iteration 10: Estimated 9665 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.1350 0.0801 0.0024 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0372 0.0902 0.0836 isotope_error_0 0.0684 -0.0715 -0.0197 isotope_error_1 -0.1211 -0.0262 -0.0768 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1684 -1.0560 -1.4026 log10_evalue 0.2830 0.1196 -0.5774 hyperscore 1.0610 1.3212 0.7586 delta_hyperscore 1.0035 1.0364 0.9493 matched_ion_num -0.7650 -0.8141 -0.7339 complementary_ions -0.3090 -0.0726 -0.1802 ion_series -0.1914 -0.2312 -0.2041 weighted_average_abs_fragment_ppm -0.0448 -0.0171 0.0351 length_7 0.1335 0.1243 0.0563 length_8 0.1223 0.0894 0.1351 length_9_30 -0.2200 -0.1859 -0.2210 length_31 0.0000 0.0000 0.0000 ntt 0.0130 0.1821 0.1858 nmc 0.0000 0.0000 0.0000 charge_1 -0.0821 0.0198 0.0450 charge_2 0.0989 0.1113 -0.0357 charge_3 -0.0413 -0.2749 -0.1244 charge_4 0.0684 0.0739 0.1093 charge_5 -0.1217 -0.0760 0.0330 charge_6 0.0846 0.0767 0.1222 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2174 0.2459 0.1970 15.9949M 0.3583 0.5107 0.3182 pred_RT_real_units 1.7475 1.6663 1.3513 unweighted_spectral_entropy 0.1312 0.1742 0.0598 delta_RT_loess -0.8763 -0.8971 -1.1087 m0 Found 9160 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35293 target PSMs and 2542 decoy PSMs. Calculating q values. Final list yields 9171 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.8010 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS18_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS18_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS18_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS18_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS18_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS18_edited.pin Started Mon Jul 29 23:18:45 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS18_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40863 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38362 positives and 2501 negatives, size ratio=15.3387 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8218 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8314 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8417 training set positives with q<0.01 in that direction. Found 12313 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8010 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12832 PSMs with q<0.01 Iteration 2: Estimated 12982 PSMs with q<0.01 Iteration 3: Estimated 13065 PSMs with q<0.01 Iteration 4: Estimated 13111 PSMs with q<0.01 Iteration 5: Estimated 13092 PSMs with q<0.01 Iteration 6: Estimated 13160 PSMs with q<0.01 Iteration 7: Estimated 13181 PSMs with q<0.01 Iteration 8: Estimated 13182 PSMs with q<0.01 Iteration 9: Estimated 13213 PSMs with q<0.01 Iteration 10: Estimated 13245 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2463 -0.1624 -0.4725 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0466 -0.0684 0.0262 isotope_error_0 0.1106 -0.0464 -0.0079 isotope_error_1 -0.0702 0.1344 -0.0223 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1218 -1.0355 -1.3015 log10_evalue 0.0431 0.3817 0.2976 hyperscore 0.8762 0.5563 1.3480 delta_hyperscore 0.2850 0.2193 -0.5105 matched_ion_num -0.6436 -0.6040 -0.7417 complementary_ions -0.3328 -0.5814 -0.0159 ion_series -0.0003 -0.0433 0.0470 weighted_average_abs_fragment_ppm 0.0882 0.0186 -0.0058 length_7 0.1107 0.0793 0.0800 length_8 0.0732 -0.0169 0.1201 length_9_30 -0.2139 -0.0428 -0.2040 length_31 0.0000 0.0000 0.0000 ntt 0.0620 -0.1180 0.1484 nmc 0.0000 0.0000 0.0000 charge_1 -0.0500 -0.1033 0.1225 charge_2 -0.0003 -0.0118 -0.1638 charge_3 0.0235 0.2821 -0.0855 charge_4 0.1493 -0.0616 0.2108 charge_5 -0.0541 -0.0186 0.1273 charge_6 0.0968 0.0070 0.0258 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1902 0.0272 0.0813 15.9949M 0.2047 -0.0590 0.3133 pred_RT_real_units 1.3587 1.4915 1.5492 unweighted_spectral_entropy -0.0866 -0.0103 -0.2053 delta_RT_loess -0.5589 -0.6878 -0.6517 m0 Found 12888 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38362 target PSMs and 2501 decoy PSMs. Calculating q values. Final list yields 12910 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.4360 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_2_edited.pin Started Mon Jul 29 23:18:52 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_N_2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36800 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34821 positives and 1979 negatives, size ratio=17.5953 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 8462 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 8706 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 8902 training set positives with q<0.01 in that direction. Found 12960 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4610 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13574 PSMs with q<0.01 Iteration 2: Estimated 13763 PSMs with q<0.01 Iteration 3: Estimated 13742 PSMs with q<0.01 Iteration 4: Estimated 13787 PSMs with q<0.01 Iteration 5: Estimated 13818 PSMs with q<0.01 Iteration 6: Estimated 13794 PSMs with q<0.01 Iteration 7: Estimated 13823 PSMs with q<0.01 Iteration 8: Estimated 13816 PSMs with q<0.01 Iteration 9: Estimated 13826 PSMs with q<0.01 Iteration 10: Estimated 13822 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1003 -0.3738 -0.1658 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0058 -0.0966 -0.0991 isotope_error_0 0.0827 0.0034 0.1061 isotope_error_1 -0.0881 0.1117 -0.0035 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4386 -2.0926 -2.1371 log10_evalue -1.3249 -0.2960 -1.8939 hyperscore 0.8729 1.1022 1.1587 delta_hyperscore 1.0468 -0.3692 1.2895 matched_ion_num -0.5431 -0.3375 -0.6679 complementary_ions 0.3082 0.6340 0.3964 ion_series -0.4258 -0.0716 -0.2646 weighted_average_abs_fragment_ppm -0.0579 -0.0400 -0.0796 length_7 0.0452 -0.0136 -0.0581 length_8 -0.0224 0.0305 0.0264 length_9_30 0.0221 -0.0139 0.0281 length_31 0.0000 0.0000 0.0000 ntt 0.0017 0.0698 0.0409 nmc 0.0000 0.0000 0.0000 charge_1 -0.0027 0.0149 -0.0022 charge_2 0.0201 0.0017 -0.0022 charge_3 -0.0382 -0.0145 -0.0047 charge_4 0.0021 -0.0624 0.0144 charge_5 -0.0152 0.0221 0.0385 charge_6 0.0000 -0.0030 -0.0016 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1010 -0.0968 -0.0397 15.9949M 0.4092 0.3387 0.3799 pred_RT_real_units 1.1689 1.0484 1.3542 unweighted_spectral_entropy -0.1542 -0.0745 -0.0766 delta_RT_loess -0.0019 0.4005 0.2139 m0 Found 13484 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34821 target PSMs and 1979 decoy PSMs. Calculating q values. Final list yields 13484 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.9130 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC14_percolator_target_psms.tsv --decoy-results-psms 20210155_HC14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC14_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC14_percolator_target_psms.tsv --decoy-results-psms 20210155_HC14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC14_edited.pin Started Mon Jul 29 23:19:00 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC14_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37362 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34969 positives and 2393 negatives, size ratio=14.613 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6739 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6809 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7057 training set positives with q<0.01 in that direction. Found 10296 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6410 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10750 PSMs with q<0.01 Iteration 2: Estimated 10871 PSMs with q<0.01 Iteration 3: Estimated 10976 PSMs with q<0.01 Iteration 4: Estimated 11021 PSMs with q<0.01 Iteration 5: Estimated 11013 PSMs with q<0.01 Iteration 6: Estimated 11002 PSMs with q<0.01 Iteration 7: Estimated 10997 PSMs with q<0.01 Iteration 8: Estimated 11026 PSMs with q<0.01 Iteration 9: Estimated 11023 PSMs with q<0.01 Iteration 10: Estimated 11005 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.0997 0.0764 0.2566 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0467 0.0543 0.1058 isotope_error_0 0.0360 0.0407 0.0747 isotope_error_1 -0.0971 -0.1115 -0.2120 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2425 -1.0214 -1.0983 log10_evalue -0.0846 0.9340 0.5973 hyperscore 0.5996 0.9521 0.6646 delta_hyperscore 0.3974 -0.1294 -0.1166 matched_ion_num -0.5515 -0.7565 -0.4033 complementary_ions -0.0685 -0.4555 -0.3457 ion_series -0.0799 -0.1969 -0.3168 weighted_average_abs_fragment_ppm -0.0678 -0.0771 -0.1028 length_7 -0.0104 -0.0210 0.0837 length_8 -0.0497 -0.1109 -0.1190 length_9_30 0.1027 0.1917 0.1417 length_31 0.0000 0.0000 0.0000 ntt 0.0191 0.3328 0.0174 nmc 0.0000 0.0000 0.0000 charge_1 0.0328 0.2127 -0.0691 charge_2 0.0365 -0.0956 0.0101 charge_3 -0.0628 -0.1265 0.1391 charge_4 -0.0612 -0.1115 -0.0815 charge_5 -0.1382 -0.1483 0.0097 charge_6 0.0617 0.0387 0.1553 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2487 0.0538 0.1585 15.9949M 0.0551 0.1168 0.1316 pred_RT_real_units 1.8259 2.0622 1.7924 unweighted_spectral_entropy 0.2584 0.0457 0.1127 delta_RT_loess -0.8958 -1.0794 -0.7852 m0 Found 10689 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34969 target PSMs and 2393 decoy PSMs. Calculating q values. Final list yields 10702 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.9990 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS23_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS23_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS23_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS23_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS23_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS23_edited.pin Started Mon Jul 29 23:19:06 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS23_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37556 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35163 positives and 2393 negatives, size ratio=14.6941 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6903 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6972 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7147 training set positives with q<0.01 in that direction. Found 10440 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5940 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10777 PSMs with q<0.01 Iteration 2: Estimated 10931 PSMs with q<0.01 Iteration 3: Estimated 11090 PSMs with q<0.01 Iteration 4: Estimated 11238 PSMs with q<0.01 Iteration 5: Estimated 11349 PSMs with q<0.01 Iteration 6: Estimated 11364 PSMs with q<0.01 Iteration 7: Estimated 11416 PSMs with q<0.01 Iteration 8: Estimated 11405 PSMs with q<0.01 Iteration 9: Estimated 11422 PSMs with q<0.01 Iteration 10: Estimated 11463 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1630 -0.3950 -0.1388 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0306 -0.0500 -0.0331 isotope_error_0 0.1868 0.1227 0.0870 isotope_error_1 -0.1750 -0.0794 -0.0591 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.5087 -1.0175 -0.6857 log10_evalue 0.7060 -0.1946 0.6317 hyperscore 0.7256 1.1118 0.7240 delta_hyperscore 0.3396 0.5426 0.3228 matched_ion_num -0.7024 -0.4664 -0.5828 complementary_ions -0.4668 -0.3719 -0.7223 ion_series -0.1128 -0.1317 -0.1578 weighted_average_abs_fragment_ppm 0.0026 0.0206 0.0567 length_7 0.0710 0.1288 0.1542 length_8 0.0890 0.0085 0.0814 length_9_30 -0.1614 -0.1084 -0.2347 length_31 0.0000 0.0000 0.0000 ntt -0.0165 -0.0546 0.0520 nmc 0.0000 0.0000 0.0000 charge_1 -0.0144 0.0991 0.0065 charge_2 0.0460 -0.0919 -0.0055 charge_3 0.0348 0.0190 0.0861 charge_4 -0.1277 -0.0082 -0.1249 charge_5 -0.0684 -0.1004 -0.0435 charge_6 0.0208 0.0220 0.0136 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0290 0.1583 0.0099 15.9949M 0.4943 0.6613 0.4771 pred_RT_real_units 1.6614 1.3929 1.6337 unweighted_spectral_entropy -0.0362 0.0509 0.2166 delta_RT_loess -0.9386 -0.7209 -0.9058 m0 Found 11003 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35163 target PSMs and 2393 decoy PSMs. Calculating q values. Final list yields 11006 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2890 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS12_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS12_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS12_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS12_edited.pin Started Mon Jul 29 23:19:12 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS12_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39864 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37375 positives and 2489 negatives, size ratio=15.0161 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7652 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7548 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7815 training set positives with q<0.01 in that direction. Found 11457 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6100 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11943 PSMs with q<0.01 Iteration 2: Estimated 12077 PSMs with q<0.01 Iteration 3: Estimated 12184 PSMs with q<0.01 Iteration 4: Estimated 12232 PSMs with q<0.01 Iteration 5: Estimated 12294 PSMs with q<0.01 Iteration 6: Estimated 12315 PSMs with q<0.01 Iteration 7: Estimated 12347 PSMs with q<0.01 Iteration 8: Estimated 12371 PSMs with q<0.01 Iteration 9: Estimated 12379 PSMs with q<0.01 Iteration 10: Estimated 12430 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2005 -0.3572 -0.0569 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0583 -0.0272 -0.0785 isotope_error_0 0.0213 0.0145 0.0890 isotope_error_1 0.0457 0.0160 -0.0073 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.4530 -0.5711 -0.2026 log10_evalue 0.4603 0.7008 -0.3373 hyperscore 1.1077 0.8632 1.2339 delta_hyperscore 1.1607 0.7263 2.0472 matched_ion_num -0.7707 -0.8136 -0.9693 complementary_ions -0.4813 -0.4503 -0.8525 ion_series -0.1659 0.0778 -0.1849 weighted_average_abs_fragment_ppm 0.0716 -0.0751 0.0170 length_7 -0.0124 0.0171 0.1033 length_8 -0.0019 -0.0345 0.0387 length_9_30 -0.0252 0.0697 -0.1296 length_31 0.0000 0.0000 0.0000 ntt 0.1115 0.0739 0.0781 nmc 0.0000 0.0000 0.0000 charge_1 -0.0279 -0.0630 0.0479 charge_2 0.0198 0.0162 -0.0307 charge_3 0.0808 0.1443 0.0096 charge_4 -0.1029 -0.0364 -0.0690 charge_5 -0.0102 -0.0891 -0.0546 charge_6 -0.0042 -0.0058 0.1219 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0306 0.0282 0.1332 15.9949M 0.1775 0.1810 0.3283 pred_RT_real_units 1.7863 1.8160 1.7725 unweighted_spectral_entropy 0.2714 0.1648 0.1889 delta_RT_loess -0.6082 -0.7269 -0.7639 m0 Found 12148 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37375 target PSMs and 2489 decoy PSMs. Calculating q values. Final list yields 12156 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.1840 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_2_20210330170407_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_2_20210330170407_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_2_20210330170407_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_2_20210330170407_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_2_20210330170407_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_2_20210330170407_edited.pin Started Mon Jul 29 23:19:20 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_2_20210330170407_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38440 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36213 positives and 2227 negatives, size ratio=16.2609 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8159 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7948 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8346 training set positives with q<0.01 in that direction. Found 12109 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6170 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12637 PSMs with q<0.01 Iteration 2: Estimated 12701 PSMs with q<0.01 Iteration 3: Estimated 12723 PSMs with q<0.01 Iteration 4: Estimated 12730 PSMs with q<0.01 Iteration 5: Estimated 12761 PSMs with q<0.01 Iteration 6: Estimated 12772 PSMs with q<0.01 Iteration 7: Estimated 12791 PSMs with q<0.01 Iteration 8: Estimated 12784 PSMs with q<0.01 Iteration 9: Estimated 12830 PSMs with q<0.01 Iteration 10: Estimated 12824 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2791 -0.2293 -0.3660 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0373 0.0952 -0.0578 isotope_error_0 -0.0234 -0.1822 -0.0321 isotope_error_1 0.0705 0.0938 0.1045 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.2859 -2.6349 -2.6496 log10_evalue -0.4729 1.1508 0.7804 hyperscore 1.1171 1.6318 1.2314 delta_hyperscore 0.2829 -0.9495 -0.8576 matched_ion_num -0.8722 -0.9561 -1.0662 complementary_ions -0.4806 -0.6257 -0.6399 ion_series 0.1654 0.0640 -0.0201 weighted_average_abs_fragment_ppm 0.0350 0.0584 0.0003 length_7 0.1560 0.0958 0.0695 length_8 0.0115 0.0932 0.0597 length_9_30 -0.0810 -0.1508 -0.0914 length_31 0.0000 0.0000 0.0000 ntt -0.0241 -0.0169 -0.0266 nmc 0.0000 0.0000 0.0000 charge_1 -0.0486 0.0884 0.1548 charge_2 0.0319 -0.0328 -0.0684 charge_3 0.0527 -0.0984 -0.1963 charge_4 -0.0793 -0.1038 -0.0258 charge_5 0.0822 0.0853 0.0476 charge_6 0.0769 0.0854 0.0550 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1613 0.2328 0.1476 15.9949M 0.0025 0.0654 0.3725 pred_RT_real_units 1.6431 1.5263 1.4647 unweighted_spectral_entropy -0.0327 -0.1333 0.0304 delta_RT_loess -0.2164 0.0490 0.0354 m0 Found 12439 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36213 target PSMs and 2227 decoy PSMs. Calculating q values. Final list yields 12449 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.7820 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC6_percolator_target_psms.tsv --decoy-results-psms 20210155_HC6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC6_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC6_percolator_target_psms.tsv --decoy-results-psms 20210155_HC6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC6_edited.pin Started Mon Jul 29 23:19:28 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC6_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39897 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37333 positives and 2564 negatives, size ratio=14.5605 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7041 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7032 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7396 training set positives with q<0.01 in that direction. Found 10755 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6960 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11388 PSMs with q<0.01 Iteration 2: Estimated 11647 PSMs with q<0.01 Iteration 3: Estimated 11828 PSMs with q<0.01 Iteration 4: Estimated 11820 PSMs with q<0.01 Iteration 5: Estimated 11843 PSMs with q<0.01 Iteration 6: Estimated 11869 PSMs with q<0.01 Iteration 7: Estimated 11918 PSMs with q<0.01 Iteration 8: Estimated 11913 PSMs with q<0.01 Iteration 9: Estimated 11889 PSMs with q<0.01 Iteration 10: Estimated 11933 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1089 -0.0429 -0.1053 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0715 -0.0351 -0.0748 isotope_error_0 0.0592 0.0285 0.0221 isotope_error_1 0.0183 0.0096 0.0645 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.5670 -0.6457 -0.0153 log10_evalue 0.4976 0.3403 1.4288 hyperscore 0.9870 1.0061 1.1225 delta_hyperscore 0.5187 1.4145 0.1411 matched_ion_num -0.8270 -1.0165 -0.6923 complementary_ions -0.3152 -0.7215 -0.4321 ion_series 0.0133 0.2070 0.0587 weighted_average_abs_fragment_ppm 0.0711 0.1009 0.0744 length_7 0.0583 0.0927 0.1651 length_8 0.0391 0.0920 0.0727 length_9_30 -0.1260 -0.2319 -0.2442 length_31 0.0000 0.0000 0.0000 ntt 0.1201 0.1568 0.0799 nmc 0.0000 0.0000 0.0000 charge_1 0.0352 0.0359 -0.0108 charge_2 -0.0969 -0.0533 -0.1007 charge_3 0.1631 0.0767 0.1015 charge_4 -0.0796 -0.1413 0.1390 charge_5 0.0084 0.0776 0.1048 charge_6 -0.0022 0.0879 0.0135 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0616 0.1536 0.0337 15.9949M 0.3440 0.4013 0.4410 pred_RT_real_units 1.5645 1.7925 1.6558 unweighted_spectral_entropy 0.0205 -0.0126 0.0616 delta_RT_loess -0.7030 -0.6858 -0.7867 m0 Found 11494 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37333 target PSMs and 2564 decoy PSMs. Calculating q values. Final list yields 11514 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9190 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS20_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS20_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS20_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS20_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS20_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS20_edited.pin Started Mon Jul 29 23:19:35 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS20_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 42364 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39614 positives and 2750 negatives, size ratio=14.4051 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7794 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8056 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8130 training set positives with q<0.01 in that direction. Found 11976 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7360 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12347 PSMs with q<0.01 Iteration 2: Estimated 12457 PSMs with q<0.01 Iteration 3: Estimated 12577 PSMs with q<0.01 Iteration 4: Estimated 12585 PSMs with q<0.01 Iteration 5: Estimated 12640 PSMs with q<0.01 Iteration 6: Estimated 12674 PSMs with q<0.01 Iteration 7: Estimated 12728 PSMs with q<0.01 Iteration 8: Estimated 12738 PSMs with q<0.01 Iteration 9: Estimated 12801 PSMs with q<0.01 Iteration 10: Estimated 12871 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0663 -0.0705 -0.0753 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0191 -0.0318 0.0083 isotope_error_0 -0.0495 -0.0263 -0.0269 isotope_error_1 0.0335 0.0675 0.0206 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.8565 -0.7136 -1.1157 log10_evalue -0.9802 -0.7172 -0.7888 hyperscore 1.3172 0.4946 0.7827 delta_hyperscore 1.5007 1.5960 1.0394 matched_ion_num -0.7364 -0.7353 -0.5410 complementary_ions -0.2548 -0.4216 -0.3664 ion_series 0.0402 -0.0167 0.0207 weighted_average_abs_fragment_ppm 0.0589 -0.0287 0.0442 length_7 0.1019 0.0548 0.1320 length_8 0.0385 0.0120 0.0120 length_9_30 -0.1465 -0.0381 -0.1265 length_31 0.0000 0.0000 0.0000 ntt 0.0183 0.0338 -0.0157 nmc 0.0000 0.0000 0.0000 charge_1 0.0243 -0.0176 0.0047 charge_2 -0.0300 0.0439 -0.0197 charge_3 0.0924 0.0061 0.0410 charge_4 -0.1825 -0.1587 -0.0344 charge_5 0.0304 0.0743 0.0010 charge_6 0.1288 0.0809 0.0823 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1312 0.0767 0.3012 15.9949M 0.4049 0.1488 0.2907 pred_RT_real_units 1.5051 1.8829 1.6470 unweighted_spectral_entropy 0.1097 0.2211 0.1147 delta_RT_loess -0.6493 -1.0794 -0.8567 m0 Found 12467 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39614 target PSMs and 2750 decoy PSMs. Calculating q values. Final list yields 12468 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9370 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS26_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS26_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS26_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS26_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS26_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS26_edited.pin Started Mon Jul 29 23:19:42 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS26_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36529 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34190 positives and 2339 negatives, size ratio=14.6174 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7632 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7520 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7581 training set positives with q<0.01 in that direction. Found 11343 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7010 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11925 PSMs with q<0.01 Iteration 2: Estimated 12032 PSMs with q<0.01 Iteration 3: Estimated 12112 PSMs with q<0.01 Iteration 4: Estimated 12208 PSMs with q<0.01 Iteration 5: Estimated 12265 PSMs with q<0.01 Iteration 6: Estimated 12295 PSMs with q<0.01 Iteration 7: Estimated 12313 PSMs with q<0.01 Iteration 8: Estimated 12304 PSMs with q<0.01 Iteration 9: Estimated 12292 PSMs with q<0.01 Iteration 10: Estimated 12294 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0140 -0.0723 -0.0902 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0725 -0.0075 0.0565 isotope_error_0 0.0560 -0.0093 -0.0186 isotope_error_1 0.0228 0.0196 -0.0465 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9266 -1.3234 -1.1114 log10_evalue 1.3106 -0.4374 0.9590 hyperscore 0.9184 0.5423 0.8477 delta_hyperscore -0.1084 1.1507 0.1222 matched_ion_num -0.6937 -0.6704 -0.6109 complementary_ions -0.2934 -0.6023 -0.1690 ion_series -0.0201 -0.2956 0.0188 weighted_average_abs_fragment_ppm -0.0870 -0.0528 -0.0414 length_7 0.1547 0.1664 0.2095 length_8 -0.0141 0.0679 0.0266 length_9_30 -0.0486 -0.1788 -0.1626 length_31 0.0000 0.0000 0.0000 ntt 0.1674 0.2671 0.1492 nmc 0.0000 0.0000 0.0000 charge_1 0.0155 0.0171 0.0060 charge_2 0.0085 0.0168 0.0230 charge_3 0.0583 -0.0009 -0.0039 charge_4 -0.1347 -0.0684 -0.0101 charge_5 -0.0813 -0.0984 -0.1365 charge_6 0.0050 0.0453 -0.0030 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1519 0.2921 0.3176 15.9949M 0.2039 0.3887 0.4649 pred_RT_real_units 1.8488 2.0789 1.8185 unweighted_spectral_entropy 0.2237 0.2223 0.1922 delta_RT_loess -0.3523 -0.7194 -0.2876 m0 Found 11888 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34190 target PSMs and 2339 decoy PSMs. Calculating q values. Final list yields 11889 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.6980 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS15_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS15_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS15_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS15_edited.pin Started Mon Jul 29 23:19:49 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS15_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40917 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38294 positives and 2623 negatives, size ratio=14.5993 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7030 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 7287 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7307 training set positives with q<0.01 in that direction. Found 10550 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7600 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11310 PSMs with q<0.01 Iteration 2: Estimated 11514 PSMs with q<0.01 Iteration 3: Estimated 11609 PSMs with q<0.01 Iteration 4: Estimated 11707 PSMs with q<0.01 Iteration 5: Estimated 11780 PSMs with q<0.01 Iteration 6: Estimated 11864 PSMs with q<0.01 Iteration 7: Estimated 11877 PSMs with q<0.01 Iteration 8: Estimated 11945 PSMs with q<0.01 Iteration 9: Estimated 11983 PSMs with q<0.01 Iteration 10: Estimated 11966 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0159 -0.2410 0.0076 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1605 -0.0475 -0.0531 isotope_error_0 0.0283 -0.0251 -0.0224 isotope_error_1 0.1567 0.0839 0.0875 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9943 -1.7759 -0.3946 log10_evalue 0.2839 -0.1184 1.0830 hyperscore 0.8559 1.0553 1.4202 delta_hyperscore 1.1643 1.4601 0.9747 matched_ion_num -1.0794 -1.0801 -0.8774 complementary_ions -0.8339 -0.6889 -1.1218 ion_series -0.0423 0.1721 0.0390 weighted_average_abs_fragment_ppm 0.0583 0.0420 0.0652 length_7 0.0613 0.1622 0.1466 length_8 0.0243 0.0544 -0.0003 length_9_30 -0.0968 -0.1922 -0.1255 length_31 0.0000 0.0000 0.0000 ntt 0.2170 0.5101 0.0383 nmc 0.0000 0.0000 0.0000 charge_1 0.0620 0.3350 -0.0145 charge_2 -0.1288 -0.2601 -0.0335 charge_3 0.1084 -0.0979 0.0641 charge_4 0.0559 0.0132 0.0357 charge_5 -0.0579 -0.1814 0.0041 charge_6 0.0821 -0.0186 0.0688 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0736 0.1537 -0.0447 15.9949M 0.0267 0.7708 0.0851 pred_RT_real_units 1.9018 1.6659 1.8156 unweighted_spectral_entropy 0.0541 0.0966 0.0877 delta_RT_loess -1.0000 -0.4999 -0.8173 m0 Found 11292 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38294 target PSMs and 2623 decoy PSMs. Calculating q values. Final list yields 11326 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7050 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_6_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_6_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_6_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_6_edited.pin Started Mon Jul 29 23:19:55 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_6_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 33431 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 31614 positives and 1817 negatives, size ratio=17.399 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7782 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8035 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7997 training set positives with q<0.01 in that direction. Found 11988 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6150 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12211 PSMs with q<0.01 Iteration 2: Estimated 12357 PSMs with q<0.01 Iteration 3: Estimated 12424 PSMs with q<0.01 Iteration 4: Estimated 12498 PSMs with q<0.01 Iteration 5: Estimated 12561 PSMs with q<0.01 Iteration 6: Estimated 12582 PSMs with q<0.01 Iteration 7: Estimated 12625 PSMs with q<0.01 Iteration 8: Estimated 12626 PSMs with q<0.01 Iteration 9: Estimated 12625 PSMs with q<0.01 Iteration 10: Estimated 12618 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.6019 -0.3049 -0.6025 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0611 -0.1672 -0.1488 isotope_error_0 0.1313 0.1065 0.1614 isotope_error_1 -0.0772 0.0775 -0.0072 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.2480 -2.1021 -2.1211 log10_evalue 0.0376 0.1455 -0.0826 hyperscore 0.7146 0.7708 1.5277 delta_hyperscore 0.0032 -0.6663 -0.2482 matched_ion_num -0.6019 -0.6077 -0.4519 complementary_ions -0.8837 -0.4198 -0.4703 ion_series 0.1143 -0.0657 0.2231 weighted_average_abs_fragment_ppm -0.0441 -0.0184 -0.0535 length_7 0.0143 0.0130 0.0512 length_8 -0.0030 -0.0120 -0.0299 length_9_30 0.0060 0.0113 0.0225 length_31 0.0000 0.0000 0.0000 ntt 0.0126 0.1102 0.0254 nmc 0.0000 0.0000 0.0000 charge_1 0.1658 0.1393 0.1092 charge_2 -0.0483 -0.0601 -0.0277 charge_3 -0.2901 -0.1575 -0.1805 charge_4 0.0720 -0.0849 -0.0129 charge_5 -0.0619 0.0725 -0.0014 charge_6 0.0359 0.0011 0.0222 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.3008 0.0880 0.1818 15.9949M 0.4198 0.2531 0.1546 pred_RT_real_units 1.8384 1.5032 1.6274 unweighted_spectral_entropy 0.3680 -0.0267 0.1291 delta_RT_loess -0.2327 -0.0966 0.0518 m0 Found 12116 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 31614 target PSMs and 1817 decoy PSMs. Calculating q values. Final list yields 12129 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4360 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC17_percolator_target_psms.tsv --decoy-results-psms 20210155_HC17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC17_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC17_percolator_target_psms.tsv --decoy-results-psms 20210155_HC17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC17_edited.pin Started Mon Jul 29 23:20:02 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC17_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40136 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37470 positives and 2666 negatives, size ratio=14.0548 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6343 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6466 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6514 training set positives with q<0.01 in that direction. Found 9603 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6970 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10096 PSMs with q<0.01 Iteration 2: Estimated 10258 PSMs with q<0.01 Iteration 3: Estimated 10332 PSMs with q<0.01 Iteration 4: Estimated 10361 PSMs with q<0.01 Iteration 5: Estimated 10387 PSMs with q<0.01 Iteration 6: Estimated 10367 PSMs with q<0.01 Iteration 7: Estimated 10377 PSMs with q<0.01 Iteration 8: Estimated 10413 PSMs with q<0.01 Iteration 9: Estimated 10423 PSMs with q<0.01 Iteration 10: Estimated 10420 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.5556 -0.4360 -0.1966 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0206 -0.0820 0.0490 isotope_error_0 -0.1759 0.0525 -0.1128 isotope_error_1 0.1737 0.0380 0.0689 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.2560 -0.7216 -1.3210 log10_evalue 0.7287 0.4646 0.2438 hyperscore 1.0724 0.8641 0.7370 delta_hyperscore -0.5483 -0.3368 -0.1207 matched_ion_num -0.3833 -0.6394 -0.5243 complementary_ions 0.2818 -0.0906 0.0632 ion_series -0.1504 -0.0015 0.0649 weighted_average_abs_fragment_ppm -0.0033 0.0128 0.0133 length_7 0.0367 0.0421 0.0513 length_8 0.0874 0.0429 0.0366 length_9_30 -0.1292 -0.0856 -0.0840 length_31 0.0000 0.0000 0.0000 ntt -0.0817 0.1813 0.2925 nmc 0.0000 0.0000 0.0000 charge_1 -0.2056 -0.0183 0.0144 charge_2 0.2916 0.0686 0.1567 charge_3 -0.1591 -0.0825 -0.2354 charge_4 0.0388 0.0251 -0.1418 charge_5 -0.0637 -0.0894 0.0015 charge_6 0.0513 0.0586 0.0070 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.4535 0.1997 0.3295 15.9949M 0.2213 0.2642 0.3642 pred_RT_real_units 1.7915 1.6958 1.6210 unweighted_spectral_entropy -0.1215 -0.0391 -0.0960 delta_RT_loess -1.4408 -1.1978 -0.9643 m0 Found 9913 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37470 target PSMs and 2666 decoy PSMs. Calculating q values. Final list yields 9923 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2460 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC2_20210513153447_percolator_target_psms.tsv --decoy-results-psms 20210155_HC2_20210513153447_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC2_20210513153447_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC2_20210513153447_percolator_target_psms.tsv --decoy-results-psms 20210155_HC2_20210513153447_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC2_20210513153447_edited.pin Started Mon Jul 29 23:20:08 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC2_20210513153447_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37917 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35232 positives and 2685 negatives, size ratio=13.1218 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 5729 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6020 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 5837 training set positives with q<0.01 in that direction. Found 8786 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6370 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9177 PSMs with q<0.01 Iteration 2: Estimated 9281 PSMs with q<0.01 Iteration 3: Estimated 9331 PSMs with q<0.01 Iteration 4: Estimated 9367 PSMs with q<0.01 Iteration 5: Estimated 9441 PSMs with q<0.01 Iteration 6: Estimated 9469 PSMs with q<0.01 Iteration 7: Estimated 9497 PSMs with q<0.01 Iteration 8: Estimated 9515 PSMs with q<0.01 Iteration 9: Estimated 9503 PSMs with q<0.01 Iteration 10: Estimated 9506 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.1222 0.1008 0.1312 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0521 0.0133 -0.1320 isotope_error_0 -0.0730 -0.0222 0.0187 isotope_error_1 0.1434 0.0092 0.1347 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4603 -0.7361 -0.9116 log10_evalue 0.6857 -0.3930 -0.0324 hyperscore 0.2041 0.5240 1.1305 delta_hyperscore -0.2056 0.3894 0.9107 matched_ion_num -0.2812 -0.1847 -0.6781 complementary_ions -0.4440 0.0179 -0.6772 ion_series -0.4022 -0.1235 -0.2742 weighted_average_abs_fragment_ppm 0.0418 -0.0431 0.0437 length_7 0.1644 0.0597 0.1347 length_8 0.0204 0.0565 0.1290 length_9_30 -0.1540 -0.0898 -0.2693 length_31 0.0000 0.0000 0.0000 ntt -0.1046 0.1625 0.3503 nmc 0.0000 0.0000 0.0000 charge_1 -0.1660 -0.1352 -0.0901 charge_2 0.1025 -0.0197 -0.0814 charge_3 0.0742 0.1072 0.2038 charge_4 0.0499 0.1392 0.1605 charge_5 0.0412 0.1787 0.0059 charge_6 -0.0110 0.1880 0.0395 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2542 0.2364 0.0262 15.9949M 0.5217 0.1348 0.3147 pred_RT_real_units 1.8920 1.7321 2.3555 unweighted_spectral_entropy 0.2028 -0.0633 -0.0166 delta_RT_loess -1.3611 -1.6083 -1.6678 m0 Found 9147 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35232 target PSMs and 2685 decoy PSMs. Calculating q values. Final list yields 9147 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 9.3380 cpu seconds or 9 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_6_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_6_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_6_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_6_edited.pin Started Mon Jul 29 23:20:18 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_6_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 42070 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39627 positives and 2443 negatives, size ratio=16.2206 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8850 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 9273 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 9111 training set positives with q<0.01 in that direction. Found 13679 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7360 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 14336 PSMs with q<0.01 Iteration 2: Estimated 14513 PSMs with q<0.01 Iteration 3: Estimated 14689 PSMs with q<0.01 Iteration 4: Estimated 14731 PSMs with q<0.01 Iteration 5: Estimated 14778 PSMs with q<0.01 Iteration 6: Estimated 14795 PSMs with q<0.01 Iteration 7: Estimated 14821 PSMs with q<0.01 Iteration 8: Estimated 14850 PSMs with q<0.01 Iteration 9: Estimated 14909 PSMs with q<0.01 Iteration 10: Estimated 14910 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1564 -0.0331 -0.1781 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1323 0.0009 -0.1251 isotope_error_0 0.1229 0.0923 0.0401 isotope_error_1 0.0174 -0.1072 0.1041 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.6041 -3.9729 -2.3195 log10_evalue -0.7277 -2.4340 -0.6662 hyperscore 0.8292 0.3432 0.8413 delta_hyperscore 0.5147 2.5023 1.1630 matched_ion_num -0.6426 -1.3633 -1.0940 complementary_ions -0.6775 -1.1194 -0.7855 ion_series 0.0682 -0.1350 -0.1377 weighted_average_abs_fragment_ppm 0.0441 0.0578 0.0750 length_7 0.0281 0.0010 0.0686 length_8 0.1031 0.0272 0.2010 length_9_30 -0.1475 -0.0517 -0.2909 length_31 0.0000 0.0000 0.0000 ntt 0.1756 0.2448 0.0520 nmc 0.0000 0.0000 0.0000 charge_1 0.1510 0.1802 0.0460 charge_2 -0.0499 0.0125 -0.0713 charge_3 -0.1908 -0.3450 0.0600 charge_4 -0.1191 -0.1185 0.0017 charge_5 0.1003 -0.1173 -0.0382 charge_6 0.0404 0.0448 0.0032 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0693 0.0431 0.1660 15.9949M 0.4908 0.3993 0.5923 pred_RT_real_units 1.6507 2.0274 2.0157 unweighted_spectral_entropy 0.0728 -0.1601 0.1774 delta_RT_loess -0.0855 -0.0407 -0.2716 m0 Found 14411 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39627 target PSMs and 2443 decoy PSMs. Calculating q values. Final list yields 14423 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 9.5210 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS7_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS7_edited.pin Started Mon Jul 29 23:20:29 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS7_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39865 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37384 positives and 2481 negatives, size ratio=15.0681 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7654 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7763 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7807 training set positives with q<0.01 in that direction. Found 11568 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6310 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12117 PSMs with q<0.01 Iteration 2: Estimated 12234 PSMs with q<0.01 Iteration 3: Estimated 12330 PSMs with q<0.01 Iteration 4: Estimated 12374 PSMs with q<0.01 Iteration 5: Estimated 12436 PSMs with q<0.01 Iteration 6: Estimated 12487 PSMs with q<0.01 Iteration 7: Estimated 12489 PSMs with q<0.01 Iteration 8: Estimated 12513 PSMs with q<0.01 Iteration 9: Estimated 12518 PSMs with q<0.01 Iteration 10: Estimated 12547 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1082 -0.1870 -0.3522 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0242 0.0361 -0.0101 isotope_error_0 0.1101 0.0770 0.0845 isotope_error_1 -0.1552 -0.1315 -0.0848 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3314 -1.0452 -1.2751 log10_evalue 0.0177 0.0736 -0.6921 hyperscore 1.0482 0.8639 1.1988 delta_hyperscore -0.0259 0.7134 1.1683 matched_ion_num -0.9323 -1.0111 -0.9709 complementary_ions 0.0941 -0.1399 -0.3456 ion_series 0.0467 -0.2109 0.1162 weighted_average_abs_fragment_ppm 0.0182 -0.0239 0.0482 length_7 0.1280 0.0345 0.0644 length_8 0.0581 0.0967 -0.0126 length_9_30 -0.1697 -0.1334 -0.0522 length_31 0.0000 0.0000 0.0000 ntt 0.2313 -0.0095 -0.0062 nmc 0.0000 0.0000 0.0000 charge_1 -0.0373 0.0860 0.0295 charge_2 0.0835 -0.0454 0.1081 charge_3 -0.0967 0.0211 -0.2412 charge_4 -0.0177 -0.1156 -0.1014 charge_5 0.0438 -0.1216 0.0735 charge_6 0.0115 -0.0007 -0.0096 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0198 0.1242 0.1180 15.9949M 0.2192 0.4348 0.4422 pred_RT_real_units 1.6550 1.5666 1.6999 unweighted_spectral_entropy -0.0580 0.2720 -0.0509 delta_RT_loess -0.6298 -0.5465 -0.7056 m0 Found 12084 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37384 target PSMs and 2481 decoy PSMs. Calculating q values. Final list yields 12106 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9180 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS3_edited.pin Started Mon Jul 29 23:20:36 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_POS3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 43811 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 40954 positives and 2857 negatives, size ratio=14.3346 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7053 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7221 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7412 training set positives with q<0.01 in that direction. Found 10790 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8160 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11248 PSMs with q<0.01 Iteration 2: Estimated 11411 PSMs with q<0.01 Iteration 3: Estimated 11488 PSMs with q<0.01 Iteration 4: Estimated 11587 PSMs with q<0.01 Iteration 5: Estimated 11600 PSMs with q<0.01 Iteration 6: Estimated 11611 PSMs with q<0.01 Iteration 7: Estimated 11645 PSMs with q<0.01 Iteration 8: Estimated 11603 PSMs with q<0.01 Iteration 9: Estimated 11659 PSMs with q<0.01 Iteration 10: Estimated 11676 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1117 -0.1522 0.0156 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1187 -0.1932 -0.1879 isotope_error_0 0.0086 0.1755 -0.0655 isotope_error_1 0.1284 0.0290 0.2916 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9310 -1.1113 -1.6037 log10_evalue -0.1943 0.2171 -0.7940 hyperscore 1.5759 1.1722 0.5961 delta_hyperscore 0.3491 0.6711 1.3451 matched_ion_num -0.8371 -1.2683 -0.8866 complementary_ions -0.2360 -0.2246 -0.7992 ion_series 0.0659 -0.2734 -0.0199 weighted_average_abs_fragment_ppm -0.0253 0.0676 -0.0772 length_7 0.0342 0.0192 0.0710 length_8 0.1112 0.0329 -0.0098 length_9_30 -0.1416 -0.0773 0.0011 length_31 0.0000 0.0000 0.0000 ntt 0.3370 0.2618 -0.0924 nmc 0.0000 0.0000 0.0000 charge_1 0.1806 0.1339 0.1269 charge_2 -0.1774 -0.0496 -0.0925 charge_3 0.1755 -0.1728 -0.0067 charge_4 -0.2710 0.0899 -0.1533 charge_5 -0.0757 -0.1581 0.0620 charge_6 0.0064 -0.0060 0.0773 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0231 -0.0836 0.0128 15.9949M 0.3963 0.4742 0.3299 pred_RT_real_units 1.9374 1.8837 2.2994 unweighted_spectral_entropy 0.0128 -0.0890 0.3450 delta_RT_loess -1.0869 -1.0311 -1.3897 m0 Found 11042 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 40954 target PSMs and 2857 decoy PSMs. Calculating q values. Final list yields 11070 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.6880 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS2_edited.pin Started Mon Jul 29 23:20:43 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39392 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36984 positives and 2408 negatives, size ratio=15.3588 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7448 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7723 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7639 training set positives with q<0.01 in that direction. Found 11402 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7660 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11895 PSMs with q<0.01 Iteration 2: Estimated 12041 PSMs with q<0.01 Iteration 3: Estimated 12120 PSMs with q<0.01 Iteration 4: Estimated 12175 PSMs with q<0.01 Iteration 5: Estimated 12185 PSMs with q<0.01 Iteration 6: Estimated 12212 PSMs with q<0.01 Iteration 7: Estimated 12211 PSMs with q<0.01 Iteration 8: Estimated 12251 PSMs with q<0.01 Iteration 9: Estimated 12261 PSMs with q<0.01 Iteration 10: Estimated 12273 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3377 -0.3070 -0.2567 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0376 -0.1027 -0.0227 isotope_error_0 0.0847 0.1808 0.0588 isotope_error_1 -0.0510 -0.0823 -0.0394 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.0142 -0.6368 -0.7420 log10_evalue -0.0169 0.7610 0.5096 hyperscore 0.8896 0.9092 0.4492 delta_hyperscore 0.5992 0.8788 0.5100 matched_ion_num -1.0147 -1.2325 -0.9167 complementary_ions 0.0354 -0.3649 -0.0541 ion_series 0.1355 0.0934 -0.0888 weighted_average_abs_fragment_ppm 0.0174 0.0914 -0.0188 length_7 0.1307 0.0835 0.0562 length_8 0.0677 0.0837 -0.0170 length_9_30 -0.1731 -0.1965 -0.0063 length_31 0.0000 0.0000 0.0000 ntt 0.0962 0.1712 0.1902 nmc 0.0000 0.0000 0.0000 charge_1 -0.0500 -0.0017 0.1029 charge_2 -0.0268 0.0502 -0.0230 charge_3 0.0806 -0.1040 -0.1361 charge_4 0.1107 0.0491 -0.0063 charge_5 0.0062 -0.1078 -0.0933 charge_6 0.0492 0.1076 0.0681 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0279 0.0077 0.0189 15.9949M 0.5192 0.3953 0.2828 pred_RT_real_units 1.6515 2.0153 1.6330 unweighted_spectral_entropy 0.0635 0.1716 0.1192 delta_RT_loess -0.6221 -0.7089 -0.7467 m0 Found 12038 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36984 target PSMs and 2408 decoy PSMs. Calculating q values. Final list yields 12058 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5450 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS10_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS10_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS10_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS10_edited.pin Started Mon Jul 29 23:20:50 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS10_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38472 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36072 positives and 2400 negatives, size ratio=15.03 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7219 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7128 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7143 training set positives with q<0.01 in that direction. Found 10752 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8290 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11139 PSMs with q<0.01 Iteration 2: Estimated 11219 PSMs with q<0.01 Iteration 3: Estimated 11251 PSMs with q<0.01 Iteration 4: Estimated 11334 PSMs with q<0.01 Iteration 5: Estimated 11397 PSMs with q<0.01 Iteration 6: Estimated 11424 PSMs with q<0.01 Iteration 7: Estimated 11435 PSMs with q<0.01 Iteration 8: Estimated 11444 PSMs with q<0.01 Iteration 9: Estimated 11482 PSMs with q<0.01 Iteration 10: Estimated 11474 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2172 -0.2554 -0.4220 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0614 -0.1447 -0.0934 isotope_error_0 0.0466 0.1079 0.0997 isotope_error_1 0.0201 0.0495 -0.0021 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.4550 -0.6615 -0.3668 log10_evalue 0.3828 -1.1145 0.7190 hyperscore 0.4764 1.0085 1.0707 delta_hyperscore 1.2015 1.9609 0.8532 matched_ion_num -0.8561 -0.9002 -1.0889 complementary_ions -0.9356 -0.6666 -0.8531 ion_series -0.2746 -0.1789 -0.2869 weighted_average_abs_fragment_ppm 0.0272 -0.0187 0.0400 length_7 0.1068 0.1246 0.0808 length_8 0.1944 0.1432 0.1828 length_9_30 -0.3166 -0.2448 -0.2916 length_31 0.0000 0.0000 0.0000 ntt 0.1342 0.1803 0.2289 nmc 0.0000 0.0000 0.0000 charge_1 -0.0306 0.1068 0.0226 charge_2 -0.0660 -0.1338 -0.0301 charge_3 0.1557 0.0798 0.0391 charge_4 0.0256 -0.0172 -0.0298 charge_5 0.0456 -0.0692 -0.0304 charge_6 0.0130 0.0121 0.0172 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0445 0.0244 -0.1763 15.9949M 0.5073 0.4693 0.4242 pred_RT_real_units 1.9604 2.0796 2.0245 unweighted_spectral_entropy 0.1700 0.0260 0.0914 delta_RT_loess -1.1522 -1.2741 -1.0942 m0 Found 11197 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36072 target PSMs and 2400 decoy PSMs. Calculating q values. Final list yields 11198 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5550 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_1_20210330145706_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_1_20210330145706_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_1_20210330145706_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_1_20210330145706_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_1_20210330145706_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_1_20210330145706_edited.pin Started Mon Jul 29 23:20:57 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_1_20210330145706_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41687 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39074 positives and 2613 negatives, size ratio=14.9537 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7380 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7167 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7216 training set positives with q<0.01 in that direction. Found 10910 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8500 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11222 PSMs with q<0.01 Iteration 2: Estimated 11266 PSMs with q<0.01 Iteration 3: Estimated 11265 PSMs with q<0.01 Iteration 4: Estimated 11282 PSMs with q<0.01 Iteration 5: Estimated 11356 PSMs with q<0.01 Iteration 6: Estimated 11397 PSMs with q<0.01 Iteration 7: Estimated 11434 PSMs with q<0.01 Iteration 8: Estimated 11491 PSMs with q<0.01 Iteration 9: Estimated 11543 PSMs with q<0.01 Iteration 10: Estimated 11556 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1854 -0.1764 -0.3711 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0218 -0.1201 -0.0538 isotope_error_0 -0.0511 0.1268 -0.0043 isotope_error_1 0.0317 -0.0018 0.0674 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.7231 -1.2402 -1.8043 log10_evalue 1.3673 -0.0397 0.9479 hyperscore 0.4880 0.7368 0.4344 delta_hyperscore -0.5781 -0.0357 -0.7806 matched_ion_num -1.1549 -0.6225 -0.6916 complementary_ions -0.5200 0.0872 -0.5876 ion_series 0.0404 -0.0124 -0.0665 weighted_average_abs_fragment_ppm 0.0251 -0.0446 -0.0424 length_7 0.1142 0.0619 0.1005 length_8 0.0038 0.0166 0.0363 length_9_30 -0.0554 -0.0321 -0.0693 length_31 0.0000 0.0000 0.0000 ntt 0.1091 0.2043 -0.0126 nmc 0.0000 0.0000 0.0000 charge_1 0.0455 0.0691 0.0865 charge_2 -0.0596 -0.0783 -0.1146 charge_3 0.1531 0.0240 0.0852 charge_4 -0.2388 -0.0572 -0.0607 charge_5 0.0102 0.0822 0.0043 charge_6 0.0088 0.0474 0.0607 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0095 0.0619 -0.0534 15.9949M 0.2941 0.1246 0.3126 pred_RT_real_units 1.5221 1.4606 1.3154 unweighted_spectral_entropy -0.0486 -0.0282 0.0661 delta_RT_loess -0.5997 -0.7580 -0.7653 m0 Found 11185 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39074 target PSMs and 2613 decoy PSMs. Calculating q values. Final list yields 11185 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4740 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS21_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS21_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS21_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS21_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS21_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS21_edited.pin Started Mon Jul 29 23:21:03 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS21_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 42421 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39641 positives and 2780 negatives, size ratio=14.2594 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7020 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7316 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7202 training set positives with q<0.01 in that direction. Found 10758 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7280 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11121 PSMs with q<0.01 Iteration 2: Estimated 11267 PSMs with q<0.01 Iteration 3: Estimated 11369 PSMs with q<0.01 Iteration 4: Estimated 11453 PSMs with q<0.01 Iteration 5: Estimated 11518 PSMs with q<0.01 Iteration 6: Estimated 11532 PSMs with q<0.01 Iteration 7: Estimated 11546 PSMs with q<0.01 Iteration 8: Estimated 11568 PSMs with q<0.01 Iteration 9: Estimated 11571 PSMs with q<0.01 Iteration 10: Estimated 11565 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0889 -0.2721 -0.1272 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0019 -0.0516 -0.0365 isotope_error_0 0.0450 0.0135 0.0380 isotope_error_1 -0.0528 0.0458 0.0004 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4693 -0.9989 -0.7256 log10_evalue 0.1294 -0.2578 0.2888 hyperscore 0.2877 0.6380 0.3027 delta_hyperscore 0.1119 0.1943 0.0573 matched_ion_num -0.6734 -0.4786 -0.3947 complementary_ions -0.1048 -0.0528 -0.1655 ion_series -0.0128 -0.0615 -0.1858 weighted_average_abs_fragment_ppm -0.0112 -0.0210 -0.0298 length_7 0.0528 0.1327 0.0949 length_8 0.0457 0.1152 0.0605 length_9_30 -0.0844 -0.2157 -0.1208 length_31 0.0000 0.0000 0.0000 ntt 0.2337 -0.0635 0.0804 nmc 0.0000 0.0000 0.0000 charge_1 0.0786 -0.1293 -0.0201 charge_2 -0.0757 -0.0193 -0.0047 charge_3 0.1593 0.2206 0.1156 charge_4 -0.2925 0.1381 -0.1284 charge_5 -0.0054 -0.0210 -0.0256 charge_6 0.0444 0.0446 0.1374 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.3492 0.3153 0.1585 15.9949M 0.2074 0.1565 0.2568 pred_RT_real_units 1.7687 1.7875 1.4315 unweighted_spectral_entropy 0.2323 0.1787 0.0861 delta_RT_loess -1.0448 -1.1645 -1.0274 m0 Found 11220 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39641 target PSMs and 2780 decoy PSMs. Calculating q values. Final list yields 11228 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.4080 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC11_percolator_target_psms.tsv --decoy-results-psms 20210155_HC11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC11_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC11_percolator_target_psms.tsv --decoy-results-psms 20210155_HC11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC11_edited.pin Started Mon Jul 29 23:21:12 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC11_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38412 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35842 positives and 2570 negatives, size ratio=13.9463 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6779 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6936 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6959 training set positives with q<0.01 in that direction. Found 10318 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6920 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10991 PSMs with q<0.01 Iteration 2: Estimated 11126 PSMs with q<0.01 Iteration 3: Estimated 11263 PSMs with q<0.01 Iteration 4: Estimated 11296 PSMs with q<0.01 Iteration 5: Estimated 11294 PSMs with q<0.01 Iteration 6: Estimated 11296 PSMs with q<0.01 Iteration 7: Estimated 11319 PSMs with q<0.01 Iteration 8: Estimated 11379 PSMs with q<0.01 Iteration 9: Estimated 11407 PSMs with q<0.01 Iteration 10: Estimated 11439 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2407 -0.2768 -0.1791 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0336 0.0297 0.0704 isotope_error_0 -0.0005 -0.0193 0.0295 isotope_error_1 0.0405 -0.0135 -0.1168 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.5191 -1.1762 -1.8258 log10_evalue 0.7606 0.4662 -0.4783 hyperscore 1.3737 0.5482 0.7752 delta_hyperscore 0.5854 -0.2644 0.9259 matched_ion_num -0.8251 -0.4813 -0.9475 complementary_ions -0.4849 -0.1247 -0.5539 ion_series -0.1151 -0.0279 0.1566 weighted_average_abs_fragment_ppm 0.1080 0.0091 0.0098 length_7 0.0871 0.1860 0.0557 length_8 -0.0200 0.0758 0.0298 length_9_30 -0.0841 -0.2222 -0.0786 length_31 0.0000 0.0000 0.0000 ntt 0.1093 0.0111 0.0556 nmc 0.0000 0.0000 0.0000 charge_1 -0.0708 0.0206 0.1624 charge_2 0.0754 -0.0523 -0.1006 charge_3 -0.0606 -0.0897 -0.1619 charge_4 0.0768 0.2146 0.0642 charge_5 0.0376 0.0845 -0.0342 charge_6 -0.0275 -0.0215 0.0654 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0892 0.0437 0.1662 15.9949M 0.2890 0.4446 0.3638 pred_RT_real_units 1.6021 1.4871 1.6874 unweighted_spectral_entropy 0.2050 0.2385 0.1727 delta_RT_loess -0.5717 -0.6470 -0.6579 m0 Found 11026 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35842 target PSMs and 2570 decoy PSMs. Calculating q values. Final list yields 11029 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5720 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_4_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_4_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_4_edited.pin Started Mon Jul 29 23:21:19 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34583 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 32660 positives and 1923 negatives, size ratio=16.9839 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7809 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7917 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7767 training set positives with q<0.01 in that direction. Found 11692 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4960 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12102 PSMs with q<0.01 Iteration 2: Estimated 12245 PSMs with q<0.01 Iteration 3: Estimated 12412 PSMs with q<0.01 Iteration 4: Estimated 12566 PSMs with q<0.01 Iteration 5: Estimated 12648 PSMs with q<0.01 Iteration 6: Estimated 12784 PSMs with q<0.01 Iteration 7: Estimated 12778 PSMs with q<0.01 Iteration 8: Estimated 12804 PSMs with q<0.01 Iteration 9: Estimated 12811 PSMs with q<0.01 Iteration 10: Estimated 12751 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0777 -0.3038 -0.3259 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.2218 -0.0353 -0.0085 isotope_error_0 0.0601 -0.0460 0.0436 isotope_error_1 -0.3301 0.0939 -0.0394 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9668 -1.7898 -1.5353 log10_evalue 3.4439 1.7877 -0.1490 hyperscore 1.4793 0.5797 1.3434 delta_hyperscore -1.8377 -1.0502 1.0248 matched_ion_num -0.8835 -0.5554 -0.5891 complementary_ions -0.5827 -0.5965 -0.0928 ion_series -0.4053 0.0361 0.1075 weighted_average_abs_fragment_ppm -0.1184 -0.0511 0.0560 length_7 -0.0562 0.0782 0.0355 length_8 -0.0145 0.0557 0.0771 length_9_30 0.0584 -0.0762 -0.1053 length_31 0.0000 0.0000 0.0000 ntt 0.2464 -0.1366 -0.1475 nmc 0.0000 0.0000 0.0000 charge_1 0.0280 -0.1009 0.1366 charge_2 -0.0513 0.0590 -0.0446 charge_3 0.0748 0.0733 -0.2096 charge_4 -0.0569 0.0336 0.0112 charge_5 0.0110 0.0177 0.0033 charge_6 -0.0015 0.0118 0.0172 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0800 -0.0238 0.0259 15.9949M 0.3984 0.3282 0.6897 pred_RT_real_units 1.5838 1.3051 1.0717 unweighted_spectral_entropy -0.2131 0.1454 -0.0550 delta_RT_loess 0.1998 -0.1280 0.4886 m0 Found 12328 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 32660 target PSMs and 1923 decoy PSMs. Calculating q values. Final list yields 12339 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.0090 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_4_edited.pin Started Mon Jul 29 23:21:25 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40630 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38257 positives and 2373 negatives, size ratio=16.1218 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8221 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8590 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8383 training set positives with q<0.01 in that direction. Found 12518 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6640 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13083 PSMs with q<0.01 Iteration 2: Estimated 13287 PSMs with q<0.01 Iteration 3: Estimated 13406 PSMs with q<0.01 Iteration 4: Estimated 13449 PSMs with q<0.01 Iteration 5: Estimated 13460 PSMs with q<0.01 Iteration 6: Estimated 13413 PSMs with q<0.01 Iteration 7: Estimated 13419 PSMs with q<0.01 Iteration 8: Estimated 13483 PSMs with q<0.01 Iteration 9: Estimated 13427 PSMs with q<0.01 Iteration 10: Estimated 13433 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2697 -0.3062 -0.2818 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0007 0.0169 0.0171 isotope_error_0 -0.0255 -0.0133 -0.0231 isotope_error_1 0.0282 -0.0048 0.0062 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6395 -1.7070 -3.1138 log10_evalue -0.8964 -1.1065 -2.3659 hyperscore 0.6034 0.5504 0.4585 delta_hyperscore 1.0212 1.1447 1.9045 matched_ion_num -0.7649 -0.7927 -0.9584 complementary_ions -0.4433 -0.0333 -0.3032 ion_series -0.0561 -0.1782 -0.2135 weighted_average_abs_fragment_ppm -0.0137 -0.0357 -0.0403 length_7 0.0121 -0.0114 -0.0010 length_8 0.0726 0.0122 -0.0040 length_9_30 -0.0832 0.0034 0.0181 length_31 0.0000 0.0000 0.0000 ntt 0.0042 -0.0431 -0.0160 nmc 0.0000 0.0000 0.0000 charge_1 0.0725 -0.0209 0.2362 charge_2 -0.0385 0.0547 -0.2162 charge_3 -0.0365 -0.0752 0.0445 charge_4 -0.0772 0.0109 -0.1836 charge_5 -0.0066 -0.0071 -0.0331 charge_6 0.0044 0.0041 0.0090 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2436 0.0659 0.2938 15.9949M 0.0450 -0.0879 0.1982 pred_RT_real_units 1.3147 0.8746 1.5359 unweighted_spectral_entropy 0.0976 -0.0627 0.1228 delta_RT_loess -0.3989 -0.3668 -0.2587 m0 Found 13221 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38257 target PSMs and 2373 decoy PSMs. Calculating q values. Final list yields 13235 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.4050 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC9_percolator_target_psms.tsv --decoy-results-psms 20210155_HC9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC9_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC9_percolator_target_psms.tsv --decoy-results-psms 20210155_HC9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC9_edited.pin Started Mon Jul 29 23:21:33 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC9_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 42112 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39251 positives and 2861 negatives, size ratio=13.7193 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7038 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7025 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7287 training set positives with q<0.01 in that direction. Found 10573 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7370 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11058 PSMs with q<0.01 Iteration 2: Estimated 11202 PSMs with q<0.01 Iteration 3: Estimated 11292 PSMs with q<0.01 Iteration 4: Estimated 11354 PSMs with q<0.01 Iteration 5: Estimated 11382 PSMs with q<0.01 Iteration 6: Estimated 11422 PSMs with q<0.01 Iteration 7: Estimated 11442 PSMs with q<0.01 Iteration 8: Estimated 11483 PSMs with q<0.01 Iteration 9: Estimated 11496 PSMs with q<0.01 Iteration 10: Estimated 11500 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0885 -0.3170 -0.2154 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0806 -0.0697 0.0890 isotope_error_0 0.1361 0.0400 0.0994 isotope_error_1 -0.2501 0.0378 -0.2186 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.4800 -1.5939 -0.8434 log10_evalue -0.3563 -0.4924 -3.2400 hyperscore 0.5840 0.5095 1.0414 delta_hyperscore 0.4987 0.3713 3.2246 matched_ion_num -0.6377 -0.4824 -0.8893 complementary_ions -0.7657 -0.5258 -0.1086 ion_series -0.2876 -0.1073 -0.0918 weighted_average_abs_fragment_ppm -0.0407 -0.0555 -0.0031 length_7 0.1623 0.0964 0.1332 length_8 0.0260 -0.0476 0.0314 length_9_30 -0.1192 0.0211 -0.1241 length_31 0.0000 0.0000 0.0000 ntt 0.0805 0.1329 0.3494 nmc 0.0000 0.0000 0.0000 charge_1 -0.0933 0.0330 0.0484 charge_2 -0.0149 0.0202 -0.0532 charge_3 0.1843 0.0087 0.0488 charge_4 0.0390 -0.1276 0.0222 charge_5 -0.0022 -0.1014 -0.1568 charge_6 0.0222 -0.0091 0.0099 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2052 0.2326 0.1239 15.9949M 0.1526 0.2554 0.4901 pred_RT_real_units 1.8723 1.7226 1.8939 unweighted_spectral_entropy 0.1767 0.0009 -0.1093 delta_RT_loess -0.9170 -1.0771 -1.3203 m0 Found 11192 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39251 target PSMs and 2861 decoy PSMs. Calculating q values. Final list yields 11197 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5560 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_8_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_8_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_8_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_8_edited.pin Started Mon Jul 29 23:21:40 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_8_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37103 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35066 positives and 2037 negatives, size ratio=17.2145 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 8468 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 8445 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8373 training set positives with q<0.01 in that direction. Found 12479 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6570 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13216 PSMs with q<0.01 Iteration 2: Estimated 13415 PSMs with q<0.01 Iteration 3: Estimated 13629 PSMs with q<0.01 Iteration 4: Estimated 13801 PSMs with q<0.01 Iteration 5: Estimated 13875 PSMs with q<0.01 Iteration 6: Estimated 13883 PSMs with q<0.01 Iteration 7: Estimated 13924 PSMs with q<0.01 Iteration 8: Estimated 13916 PSMs with q<0.01 Iteration 9: Estimated 13999 PSMs with q<0.01 Iteration 10: Estimated 14012 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1911 -0.3872 -0.3421 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0996 -0.1104 -0.1287 isotope_error_0 0.0348 0.0743 0.1427 isotope_error_1 0.0785 0.0462 -0.0102 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.2799 -1.5269 -1.6140 log10_evalue -0.5613 0.0052 -0.5070 hyperscore 0.4549 0.8398 0.3701 delta_hyperscore 1.0158 0.9249 0.9862 matched_ion_num -0.9219 -0.8317 -0.9565 complementary_ions -0.4076 -0.4119 -0.1767 ion_series -0.0174 0.0322 0.0195 weighted_average_abs_fragment_ppm 0.0374 0.0309 -0.0291 length_7 0.1066 0.2246 0.0510 length_8 0.1586 0.2070 0.1622 length_9_30 -0.2575 -0.3758 -0.2058 length_31 0.0000 0.0000 0.0000 ntt 0.1682 -0.0888 0.1054 nmc 0.0000 0.0000 0.0000 charge_1 0.0403 -0.0439 -0.0279 charge_2 -0.0536 -0.0365 -0.0390 charge_3 0.0483 0.1342 0.1024 charge_4 -0.0799 0.0415 0.0457 charge_5 0.0828 0.1002 0.0975 charge_6 -0.0003 -0.0005 0.0007 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2705 0.2289 0.2253 15.9949M 0.1964 0.3225 0.2539 pred_RT_real_units 1.4907 1.1772 1.5273 unweighted_spectral_entropy -0.0710 0.1728 0.0541 delta_RT_loess 0.0512 0.1051 -0.1429 m0 Found 13842 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35066 target PSMs and 2037 decoy PSMs. Calculating q values. Final list yields 13842 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9890 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS13_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS13_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS13_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS13_edited.pin Started Mon Jul 29 23:21:47 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS13_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40898 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38145 positives and 2753 negatives, size ratio=13.8558 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6913 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6921 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6889 training set positives with q<0.01 in that direction. Found 10330 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7130 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10880 PSMs with q<0.01 Iteration 2: Estimated 11047 PSMs with q<0.01 Iteration 3: Estimated 11171 PSMs with q<0.01 Iteration 4: Estimated 11228 PSMs with q<0.01 Iteration 5: Estimated 11293 PSMs with q<0.01 Iteration 6: Estimated 11310 PSMs with q<0.01 Iteration 7: Estimated 11349 PSMs with q<0.01 Iteration 8: Estimated 11365 PSMs with q<0.01 Iteration 9: Estimated 11393 PSMs with q<0.01 Iteration 10: Estimated 11384 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1077 -0.2830 -0.4751 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0649 0.0438 -0.0375 isotope_error_0 0.1251 -0.0137 -0.0313 isotope_error_1 -0.0648 -0.0361 0.0795 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6619 -1.4343 -1.2279 log10_evalue 0.3642 0.1689 -0.3548 hyperscore 0.5900 0.4985 0.7920 delta_hyperscore 0.4079 0.0459 0.5787 matched_ion_num -0.9816 -0.6756 -0.8748 complementary_ions -0.6431 -0.4465 0.1318 ion_series -0.0618 -0.0353 0.1690 weighted_average_abs_fragment_ppm 0.0454 -0.1207 -0.1076 length_7 0.0832 0.0430 0.1306 length_8 0.1794 0.0987 0.0372 length_9_30 -0.2938 -0.0930 -0.0794 length_31 0.0000 0.0000 0.0000 ntt 0.2085 0.2219 0.3032 nmc 0.0000 0.0000 0.0000 charge_1 0.2021 0.1695 0.1634 charge_2 -0.1080 -0.0388 -0.0319 charge_3 -0.1004 -0.0996 -0.0438 charge_4 -0.1138 -0.2756 -0.3438 charge_5 -0.0747 0.0065 -0.0581 charge_6 0.0487 0.0303 0.0718 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1220 0.0643 0.3550 15.9949M 0.6453 0.3917 0.1808 pred_RT_real_units 2.0986 1.8706 1.8069 unweighted_spectral_entropy 0.1291 0.1963 0.0872 delta_RT_loess -1.0889 -1.4540 -1.0273 m0 Found 11111 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38145 target PSMs and 2753 decoy PSMs. Calculating q values. Final list yields 11113 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.1460 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS2_edited.pin Started Mon Jul 29 23:21:53 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_POS2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40410 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37921 positives and 2489 negatives, size ratio=15.2354 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7562 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7751 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7547 training set positives with q<0.01 in that direction. Found 11432 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6570 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11844 PSMs with q<0.01 Iteration 2: Estimated 11928 PSMs with q<0.01 Iteration 3: Estimated 12062 PSMs with q<0.01 Iteration 4: Estimated 12100 PSMs with q<0.01 Iteration 5: Estimated 12100 PSMs with q<0.01 Iteration 6: Estimated 12162 PSMs with q<0.01 Iteration 7: Estimated 12245 PSMs with q<0.01 Iteration 8: Estimated 12323 PSMs with q<0.01 Iteration 9: Estimated 12349 PSMs with q<0.01 Iteration 10: Estimated 12374 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0765 -0.0421 -0.2244 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0684 0.0455 -0.0252 isotope_error_0 0.1211 -0.0769 0.0051 isotope_error_1 -0.0564 0.0334 0.0241 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2432 -1.5066 -2.5730 log10_evalue -1.1907 -0.9664 -2.5130 hyperscore 0.8163 0.5767 1.1209 delta_hyperscore 1.6666 1.0466 2.7470 matched_ion_num -0.8239 -0.4960 -0.7433 complementary_ions -0.2099 -0.4249 0.0903 ion_series -0.2134 -0.1667 -0.0591 weighted_average_abs_fragment_ppm -0.0421 0.0809 -0.0068 length_7 -0.0055 0.0478 0.0327 length_8 -0.0276 0.0674 0.0326 length_9_30 0.0561 -0.1489 -0.0576 length_31 0.0000 0.0000 0.0000 ntt 0.5061 -0.0102 0.3020 nmc 0.0000 0.0000 0.0000 charge_1 0.1446 -0.0363 0.2042 charge_2 -0.0807 0.0406 -0.2785 charge_3 -0.1349 -0.0325 0.1547 charge_4 0.0008 0.0312 -0.0352 charge_5 0.0083 -0.0008 0.0296 charge_6 0.0059 0.0927 0.0095 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0682 0.1888 0.3749 15.9949M 0.2444 0.3715 0.5118 pred_RT_real_units 1.6105 1.4244 1.4964 unweighted_spectral_entropy -0.1207 0.0267 0.0976 delta_RT_loess -0.7160 -0.6236 -0.2476 m0 Found 11677 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37921 target PSMs and 2489 decoy PSMs. Calculating q values. Final list yields 11677 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.0010 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_5_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_5_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_5_edited.pin Started Mon Jul 29 23:22:00 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34999 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33038 positives and 1961 negatives, size ratio=16.8475 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7630 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7675 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 7566 training set positives with q<0.01 in that direction. Found 11031 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6210 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11795 PSMs with q<0.01 Iteration 2: Estimated 11990 PSMs with q<0.01 Iteration 3: Estimated 12175 PSMs with q<0.01 Iteration 4: Estimated 12265 PSMs with q<0.01 Iteration 5: Estimated 12397 PSMs with q<0.01 Iteration 6: Estimated 12464 PSMs with q<0.01 Iteration 7: Estimated 12536 PSMs with q<0.01 Iteration 8: Estimated 12574 PSMs with q<0.01 Iteration 9: Estimated 12630 PSMs with q<0.01 Iteration 10: Estimated 12643 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2323 -0.1943 -0.2060 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0036 -0.0562 0.0428 isotope_error_0 0.0273 0.1215 -0.0251 isotope_error_1 -0.0267 -0.0713 -0.0222 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.0147 -1.7013 -2.1281 log10_evalue -0.6235 -0.3988 -0.2179 hyperscore 0.4108 0.6452 0.4497 delta_hyperscore 0.5353 0.3382 0.4226 matched_ion_num -0.8905 -0.7607 -1.1807 complementary_ions -0.1448 -0.1693 0.1114 ion_series -0.1313 -0.2229 -0.2471 weighted_average_abs_fragment_ppm 0.0502 0.0441 0.0753 length_7 0.0672 -0.0491 -0.0807 length_8 0.0952 0.1136 0.0818 length_9_30 -0.1313 -0.1111 -0.0725 length_31 0.0000 0.0000 0.0000 ntt -0.1120 -0.1487 -0.0611 nmc 0.0000 0.0000 0.0000 charge_1 -0.0316 0.0505 0.0734 charge_2 -0.0485 -0.1514 -0.1164 charge_3 0.1147 0.2028 0.1122 charge_4 0.0930 -0.0033 -0.0900 charge_5 0.0555 0.0722 0.0886 charge_6 0.0362 0.0031 0.0176 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0010 -0.1266 -0.0461 15.9949M 0.5152 0.5625 0.6152 pred_RT_real_units 1.2780 1.4751 1.5356 unweighted_spectral_entropy 0.2909 0.2363 0.3559 delta_RT_loess -0.1650 -0.2898 -0.1668 m0 Found 12210 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33038 target PSMs and 1961 decoy PSMs. Calculating q values. Final list yields 12224 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4930 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS6_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS6_edited.pin Started Mon Jul 29 23:22:06 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS6_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38890 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36358 positives and 2532 negatives, size ratio=14.3594 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6875 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6922 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7261 training set positives with q<0.01 in that direction. Found 10526 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6690 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11074 PSMs with q<0.01 Iteration 2: Estimated 11221 PSMs with q<0.01 Iteration 3: Estimated 11352 PSMs with q<0.01 Iteration 4: Estimated 11460 PSMs with q<0.01 Iteration 5: Estimated 11562 PSMs with q<0.01 Iteration 6: Estimated 11608 PSMs with q<0.01 Iteration 7: Estimated 11622 PSMs with q<0.01 Iteration 8: Estimated 11636 PSMs with q<0.01 Iteration 9: Estimated 11626 PSMs with q<0.01 Iteration 10: Estimated 11637 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0418 -0.1813 -0.1148 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0704 -0.1063 0.0919 isotope_error_0 0.0380 -0.0128 0.0649 isotope_error_1 0.0406 0.1404 -0.1821 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.5421 -0.7779 -0.3908 log10_evalue 0.2449 -0.8608 -0.2375 hyperscore 1.0768 1.2885 0.7294 delta_hyperscore 1.0025 0.9116 1.0110 matched_ion_num -0.6629 -0.6372 -0.9841 complementary_ions -0.4081 0.0278 -0.1158 ion_series 0.0421 0.1137 -0.1369 weighted_average_abs_fragment_ppm 0.0097 0.0108 -0.0052 length_7 0.1219 0.1519 0.0875 length_8 0.1131 0.1390 0.1864 length_9_30 -0.2275 -0.2805 -0.2887 length_31 0.0000 0.0000 0.0000 ntt 0.1248 0.5422 0.1213 nmc 0.0000 0.0000 0.0000 charge_1 -0.1247 -0.1630 -0.1526 charge_2 -0.0011 0.0838 0.0765 charge_3 0.0784 -0.0502 -0.0062 charge_4 0.2727 0.3305 0.2810 charge_5 -0.0097 -0.0090 -0.0485 charge_6 0.0253 0.0755 0.0172 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2755 -0.0041 0.1797 15.9949M 0.0568 0.0688 0.1910 pred_RT_real_units 2.1476 2.1116 1.9961 unweighted_spectral_entropy 0.2678 0.0480 0.2258 delta_RT_loess -1.1341 -0.9765 -1.0181 m0 Found 11356 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36358 target PSMs and 2532 decoy PSMs. Calculating q values. Final list yields 11372 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.8380 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS3_edited.pin Started Mon Jul 29 23:22:13 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38857 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36420 positives and 2437 negatives, size ratio=14.9446 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7482 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7469 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7603 training set positives with q<0.01 in that direction. Found 11177 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7110 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11686 PSMs with q<0.01 Iteration 2: Estimated 11796 PSMs with q<0.01 Iteration 3: Estimated 11885 PSMs with q<0.01 Iteration 4: Estimated 11950 PSMs with q<0.01 Iteration 5: Estimated 11984 PSMs with q<0.01 Iteration 6: Estimated 11999 PSMs with q<0.01 Iteration 7: Estimated 12006 PSMs with q<0.01 Iteration 8: Estimated 12007 PSMs with q<0.01 Iteration 9: Estimated 12011 PSMs with q<0.01 Iteration 10: Estimated 12028 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0209 0.0447 -0.3199 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1345 -0.1355 -0.0629 isotope_error_0 0.0754 0.2194 0.0663 isotope_error_1 0.0748 -0.0874 -0.0002 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.2931 -0.8552 -0.3816 log10_evalue -0.3984 -0.2107 -0.8715 hyperscore 1.3810 1.1462 1.0170 delta_hyperscore 0.9453 0.7399 0.9461 matched_ion_num -0.5768 -0.6898 -0.4638 complementary_ions -0.2337 0.1525 -0.0646 ion_series -0.2175 -0.2654 -0.0726 weighted_average_abs_fragment_ppm 0.0803 -0.1231 -0.0443 length_7 0.0784 0.1367 0.1296 length_8 -0.0529 -0.0935 0.0108 length_9_30 -0.0261 0.0839 -0.0799 length_31 0.0000 0.0000 0.0000 ntt 0.1475 0.1899 0.0263 nmc 0.0000 0.0000 0.0000 charge_1 0.0259 0.0150 -0.1068 charge_2 0.0489 0.0218 0.0967 charge_3 -0.0875 -0.0659 0.0552 charge_4 -0.0404 -0.0094 -0.0090 charge_5 -0.1190 -0.0615 -0.1056 charge_6 0.0471 0.1661 0.0759 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0060 0.0738 0.1186 15.9949M 0.2511 0.1095 0.2630 pred_RT_real_units 1.5155 1.6913 1.6365 unweighted_spectral_entropy 0.1265 0.1282 0.1094 delta_RT_loess -0.7225 -1.0017 -0.9504 m0 Found 11560 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36420 target PSMs and 2437 decoy PSMs. Calculating q values. Final list yields 11573 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.6770 cpu seconds or 8 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC13_percolator_target_psms.tsv --decoy-results-psms 20210155_HC13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC13_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC13_percolator_target_psms.tsv --decoy-results-psms 20210155_HC13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC13_edited.pin Started Mon Jul 29 23:22:22 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC13_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 31952 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 30025 positives and 1927 negatives, size ratio=15.5812 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6302 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6359 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6507 training set positives with q<0.01 in that direction. Found 9602 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5240 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10190 PSMs with q<0.01 Iteration 2: Estimated 10202 PSMs with q<0.01 Iteration 3: Estimated 10257 PSMs with q<0.01 Iteration 4: Estimated 10332 PSMs with q<0.01 Iteration 5: Estimated 10345 PSMs with q<0.01 Iteration 6: Estimated 10396 PSMs with q<0.01 Iteration 7: Estimated 10403 PSMs with q<0.01 Iteration 8: Estimated 10430 PSMs with q<0.01 Iteration 9: Estimated 10439 PSMs with q<0.01 Iteration 10: Estimated 10460 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.0539 -0.0139 -0.0021 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0227 -0.0116 0.0298 isotope_error_0 0.1337 0.1729 0.0684 isotope_error_1 -0.1271 -0.1860 -0.1156 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1423 -2.4156 -1.1951 log10_evalue 1.0826 0.8735 0.2024 hyperscore 1.3083 0.9066 1.0512 delta_hyperscore -0.3837 -1.9445 -0.1775 matched_ion_num -0.7719 -0.4755 -0.6245 complementary_ions -0.2102 0.1957 0.1305 ion_series -0.1474 -0.3611 0.1113 weighted_average_abs_fragment_ppm 0.0911 -0.0245 0.0300 length_7 0.0862 0.0917 0.1630 length_8 0.0489 0.0531 0.0381 length_9_30 -0.1812 -0.1281 -0.1933 length_31 0.0000 0.0000 0.0000 ntt 0.0355 0.2538 0.1441 nmc 0.0000 0.0000 0.0000 charge_1 -0.0393 -0.1073 -0.1351 charge_2 -0.0025 0.0442 0.0394 charge_3 0.0070 0.0539 0.1499 charge_4 0.0941 0.1477 0.0300 charge_5 0.0031 -0.0240 0.0911 charge_6 0.2064 0.0212 0.0273 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2076 0.1097 0.1277 15.9949M -0.0811 0.0758 0.1534 pred_RT_real_units 1.4637 1.7544 1.7143 unweighted_spectral_entropy -0.3817 -0.3159 -0.1413 delta_RT_loess -0.4498 -0.4791 -0.6321 m0 Found 9999 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 30025 target PSMs and 1927 decoy PSMs. Calculating q values. Final list yields 10002 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.3800 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS1_edited.pin Started Mon Jul 29 23:22:30 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41111 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38353 positives and 2758 negatives, size ratio=13.9061 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7068 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7194 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7064 training set positives with q<0.01 in that direction. Found 10659 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6310 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11176 PSMs with q<0.01 Iteration 2: Estimated 11251 PSMs with q<0.01 Iteration 3: Estimated 11323 PSMs with q<0.01 Iteration 4: Estimated 11388 PSMs with q<0.01 Iteration 5: Estimated 11397 PSMs with q<0.01 Iteration 6: Estimated 11392 PSMs with q<0.01 Iteration 7: Estimated 11406 PSMs with q<0.01 Iteration 8: Estimated 11428 PSMs with q<0.01 Iteration 9: Estimated 11467 PSMs with q<0.01 Iteration 10: Estimated 11492 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0609 -0.3480 -0.2005 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0463 -0.0141 -0.0707 isotope_error_0 -0.0016 0.0840 0.1203 isotope_error_1 0.0564 -0.0781 -0.0523 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3055 -1.1031 -0.7575 log10_evalue -0.0885 -0.7353 0.3832 hyperscore 0.1697 0.6491 0.6237 delta_hyperscore 0.3952 0.9223 -0.2895 matched_ion_num -0.6552 -0.8809 -0.9135 complementary_ions -0.4807 -0.2167 0.1541 ion_series 0.0357 0.0827 -0.2619 weighted_average_abs_fragment_ppm 0.0084 -0.0822 0.0312 length_7 0.0834 0.0728 0.0053 length_8 -0.0250 -0.0685 0.0573 length_9_30 -0.0276 0.0759 -0.0889 length_31 0.0000 0.0000 0.0000 ntt 0.2101 0.1240 0.3182 nmc 0.0000 0.0000 0.0000 charge_1 0.0864 0.0952 0.1533 charge_2 -0.1294 0.0356 -0.0836 charge_3 0.0684 -0.0787 -0.0547 charge_4 0.0382 -0.3088 -0.1030 charge_5 -0.0597 0.0126 -0.0612 charge_6 0.0749 0.0412 -0.0077 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0926 0.0306 0.0133 15.9949M 0.2309 0.1441 0.5432 pred_RT_real_units 1.9164 1.8276 1.7069 unweighted_spectral_entropy -0.0098 -0.1124 -0.1601 delta_RT_loess -1.1672 -1.1149 -0.9864 m0 Found 11048 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38353 target PSMs and 2758 decoy PSMs. Calculating q values. Final list yields 11066 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2520 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS24_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS24_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS24_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS24_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS24_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS24_edited.pin Started Mon Jul 29 23:22:36 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS24_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41962 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39136 positives and 2826 negatives, size ratio=13.8485 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6705 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7102 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7088 training set positives with q<0.01 in that direction. Found 10405 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7260 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10798 PSMs with q<0.01 Iteration 2: Estimated 10905 PSMs with q<0.01 Iteration 3: Estimated 10983 PSMs with q<0.01 Iteration 4: Estimated 10999 PSMs with q<0.01 Iteration 5: Estimated 11088 PSMs with q<0.01 Iteration 6: Estimated 11151 PSMs with q<0.01 Iteration 7: Estimated 11172 PSMs with q<0.01 Iteration 8: Estimated 11175 PSMs with q<0.01 Iteration 9: Estimated 11200 PSMs with q<0.01 Iteration 10: Estimated 11226 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1693 -0.0394 -0.3183 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0492 0.0105 -0.2417 isotope_error_0 0.0835 0.0478 0.0940 isotope_error_1 -0.0359 -0.0655 0.1766 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.9471 -1.2858 -1.4167 log10_evalue -1.9403 -0.8216 -1.1128 hyperscore 1.6503 0.7644 1.1741 delta_hyperscore 2.3033 0.9351 1.6252 matched_ion_num -0.6851 -0.7241 -0.8731 complementary_ions 0.2468 -0.1803 -0.2110 ion_series 0.2251 -0.1236 -0.1384 weighted_average_abs_fragment_ppm -0.0942 -0.0204 -0.0826 length_7 0.0059 -0.0259 0.0284 length_8 -0.1319 -0.0628 -0.1477 length_9_30 0.1999 0.1025 0.1996 length_31 0.0000 0.0000 0.0000 ntt 0.1955 0.1310 0.0054 nmc 0.0000 0.0000 0.0000 charge_1 0.0371 0.1657 0.1249 charge_2 -0.0551 -0.0791 -0.1505 charge_3 0.1078 -0.0342 0.1424 charge_4 -0.0399 -0.1225 -0.0739 charge_5 -0.1510 -0.1880 -0.1556 charge_6 0.0192 -0.0087 0.0227 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0992 0.3169 0.0486 15.9949M 0.0021 0.1067 0.3220 pred_RT_real_units 1.8474 1.5780 1.9910 unweighted_spectral_entropy 0.0066 -0.0051 0.2093 delta_RT_loess -1.0702 -0.9206 -1.0841 m0 Found 10771 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39136 target PSMs and 2826 decoy PSMs. Calculating q values. Final list yields 10779 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4060 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_5_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_5_edited.pin Started Mon Jul 29 23:22:43 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 24243 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 22933 positives and 1310 negatives, size ratio=17.5061 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6084 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6206 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6193 training set positives with q<0.01 in that direction. Found 9290 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4660 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9707 PSMs with q<0.01 Iteration 2: Estimated 9800 PSMs with q<0.01 Iteration 3: Estimated 9852 PSMs with q<0.01 Iteration 4: Estimated 9926 PSMs with q<0.01 Iteration 5: Estimated 9946 PSMs with q<0.01 Iteration 6: Estimated 9968 PSMs with q<0.01 Iteration 7: Estimated 10012 PSMs with q<0.01 Iteration 8: Estimated 10029 PSMs with q<0.01 Iteration 9: Estimated 10064 PSMs with q<0.01 Iteration 10: Estimated 10082 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2309 -0.1240 -0.1973 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0519 -0.0766 -0.1115 isotope_error_0 0.0507 0.0417 0.0242 isotope_error_1 0.0039 0.0440 0.1063 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1657 -0.3926 -0.4700 log10_evalue 0.0152 -0.0147 -0.5883 hyperscore 0.7350 0.9895 0.5668 delta_hyperscore 0.7975 0.8065 1.3020 matched_ion_num -0.9442 -0.7397 -0.9190 complementary_ions -0.6810 -0.5165 -0.3205 ion_series -0.0211 0.0102 -0.1023 weighted_average_abs_fragment_ppm 0.0566 0.1052 -0.0022 length_7 0.0966 0.0618 0.1141 length_8 0.1100 0.0837 0.1257 length_9_30 -0.2176 -0.1861 -0.2211 length_31 0.0000 0.0000 0.0000 ntt 0.1096 0.1570 0.1118 nmc 0.0000 0.0000 0.0000 charge_1 -0.1550 -0.1729 -0.1052 charge_2 0.0657 0.1174 0.0128 charge_3 0.1320 0.1025 0.1539 charge_4 0.1204 0.0342 0.0553 charge_5 0.0095 0.0111 0.0822 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.1828 -0.1499 0.1821 15.9949M 0.3308 0.1532 0.2346 pred_RT_real_units 1.7265 1.7180 1.7350 unweighted_spectral_entropy -0.0558 0.0553 -0.0658 delta_RT_loess -0.2424 -0.2783 -0.4004 m0 Found 9738 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 22933 target PSMs and 1310 decoy PSMs. Calculating q values. Final list yields 9767 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.2420 cpu seconds or 4 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG1_edited.pin Started Mon Jul 29 23:22:48 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38248 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35719 positives and 2529 negatives, size ratio=14.1238 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6601 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6409 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6683 training set positives with q<0.01 in that direction. Found 9803 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.8050 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10299 PSMs with q<0.01 Iteration 2: Estimated 10340 PSMs with q<0.01 Iteration 3: Estimated 10349 PSMs with q<0.01 Iteration 4: Estimated 10373 PSMs with q<0.01 Iteration 5: Estimated 10391 PSMs with q<0.01 Iteration 6: Estimated 10391 PSMs with q<0.01 Iteration 7: Estimated 10394 PSMs with q<0.01 Iteration 8: Estimated 10383 PSMs with q<0.01 Iteration 9: Estimated 10398 PSMs with q<0.01 Iteration 10: Estimated 10416 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1365 -0.2894 -0.4249 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0398 0.0360 0.0349 isotope_error_0 0.0111 -0.0468 0.0411 isotope_error_1 0.0354 0.0102 -0.0894 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3601 -1.0935 -2.1799 log10_evalue 0.9576 -0.1663 0.7828 hyperscore 0.1451 0.9235 0.3025 delta_hyperscore -0.2835 1.0443 -0.1500 matched_ion_num -0.7821 -0.9501 -0.8307 complementary_ions -0.3232 -0.3532 -0.5301 ion_series 0.0043 0.0765 0.5111 weighted_average_abs_fragment_ppm -0.0722 -0.0551 0.0494 length_7 -0.0210 0.0039 0.1121 length_8 0.0422 0.0992 0.0317 length_9_30 0.0029 -0.1042 -0.1619 length_31 0.0000 0.0000 0.0000 ntt 0.2653 0.2271 0.0724 nmc 0.0000 0.0000 0.0000 charge_1 0.0562 0.0412 0.0261 charge_2 -0.0782 -0.0652 -0.1475 charge_3 0.0551 0.0754 0.2421 charge_4 -0.0140 -0.0481 -0.0046 charge_5 -0.0242 -0.0098 -0.0133 charge_6 0.0284 0.0237 0.0641 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.1141 -0.1314 0.0716 15.9949M 0.1853 0.2323 0.2146 pred_RT_real_units 2.0008 1.8974 1.8641 unweighted_spectral_entropy -0.1418 -0.0544 0.1503 delta_RT_loess -1.2989 -1.0983 -0.9303 m0 Found 9911 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35719 target PSMs and 2529 decoy PSMs. Calculating q values. Final list yields 9916 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.9260 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS29_20210519114001_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS29_20210519114001_edited.pin Started Mon Jul 29 23:22:54 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS29_20210519114001_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37943 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35635 positives and 2308 negatives, size ratio=15.4398 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8055 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8245 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8049 training set positives with q<0.01 in that direction. Found 12184 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7550 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12647 PSMs with q<0.01 Iteration 2: Estimated 12861 PSMs with q<0.01 Iteration 3: Estimated 12933 PSMs with q<0.01 Iteration 4: Estimated 12999 PSMs with q<0.01 Iteration 5: Estimated 13075 PSMs with q<0.01 Iteration 6: Estimated 13091 PSMs with q<0.01 Iteration 7: Estimated 13185 PSMs with q<0.01 Iteration 8: Estimated 13195 PSMs with q<0.01 Iteration 9: Estimated 13212 PSMs with q<0.01 Iteration 10: Estimated 13218 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0615 -0.2246 -0.0111 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0028 0.0055 -0.1377 isotope_error_0 0.0642 0.0187 -0.0085 isotope_error_1 -0.0701 -0.0279 0.1752 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.5719 -1.3032 -0.9484 log10_evalue -1.0859 -0.5771 -0.6984 hyperscore 0.5767 0.6120 0.8472 delta_hyperscore 1.7633 0.2934 0.9738 matched_ion_num -0.6220 -0.5674 -0.4732 complementary_ions -0.4539 0.1303 -0.3634 ion_series -0.0881 -0.0783 -0.1062 weighted_average_abs_fragment_ppm -0.0260 -0.0461 0.0089 length_7 0.1838 0.0689 0.0580 length_8 0.0632 0.0944 0.0869 length_9_30 -0.1971 -0.1454 -0.1566 length_31 0.0000 0.0000 0.0000 ntt 0.0838 -0.0340 0.2831 nmc 0.0000 0.0000 0.0000 charge_1 -0.0608 -0.0761 0.0097 charge_2 0.0760 0.0755 0.0194 charge_3 -0.0378 -0.0649 0.0158 charge_4 -0.0098 0.1166 -0.0932 charge_5 0.0573 0.0024 -0.0557 charge_6 -0.0185 -0.0029 -0.0298 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0595 0.0408 0.0883 15.9949M 0.4997 0.4214 0.6116 pred_RT_real_units 1.7864 1.4891 1.8923 unweighted_spectral_entropy 0.1771 0.0705 0.0729 delta_RT_loess -0.7694 -0.4605 -0.6715 m0 Found 12746 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35635 target PSMs and 2308 decoy PSMs. Calculating q values. Final list yields 12801 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.2710 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_3_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_3_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_3_edited.pin Started Mon Jul 29 23:23:01 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34343 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 32485 positives and 1858 negatives, size ratio=17.4839 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 7701 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 7641 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 7643 training set positives with q<0.01 in that direction. Found 11402 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5300 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12142 PSMs with q<0.01 Iteration 2: Estimated 12447 PSMs with q<0.01 Iteration 3: Estimated 12624 PSMs with q<0.01 Iteration 4: Estimated 12648 PSMs with q<0.01 Iteration 5: Estimated 12694 PSMs with q<0.01 Iteration 6: Estimated 12668 PSMs with q<0.01 Iteration 7: Estimated 12715 PSMs with q<0.01 Iteration 8: Estimated 12741 PSMs with q<0.01 Iteration 9: Estimated 12768 PSMs with q<0.01 Iteration 10: Estimated 12761 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3730 -0.2777 -0.3281 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0248 -0.0132 0.0017 isotope_error_0 0.0732 0.0544 0.0700 isotope_error_1 -0.1146 -0.0470 -0.0830 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.5746 -2.4043 -1.9646 log10_evalue -0.6449 -0.0696 -1.6466 hyperscore 1.7074 0.8583 1.3804 delta_hyperscore 0.7061 0.0516 2.0315 matched_ion_num -0.9474 -0.9191 -0.7656 complementary_ions -1.0026 -0.4863 -0.8892 ion_series -0.1838 -0.0856 0.0450 weighted_average_abs_fragment_ppm 0.2786 -0.0660 -0.0379 length_7 0.0915 0.1563 0.3085 length_8 0.0488 0.0433 0.0490 length_9_30 -0.1586 -0.0986 -0.1767 length_31 0.0000 0.0000 0.0000 ntt 0.2416 0.2769 0.0995 nmc 0.0000 0.0000 0.0000 charge_1 0.1293 0.0743 0.0126 charge_2 -0.1394 -0.1043 -0.0339 charge_3 0.0215 0.0633 0.0349 charge_4 0.0198 -0.0096 0.0499 charge_5 -0.0531 0.0230 -0.0517 charge_6 -0.0018 -0.0005 0.0007 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0736 -0.0464 -0.0597 15.9949M 0.5869 0.5011 0.5033 pred_RT_real_units 1.7314 1.4023 1.4353 unweighted_spectral_entropy 0.0114 0.0421 0.0161 delta_RT_loess 0.2330 0.0698 0.0764 m0 Found 12374 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 32485 target PSMs and 1858 decoy PSMs. Calculating q values. Final list yields 12376 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 11.0490 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_10_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_10_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_10_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_10_edited.pin Started Mon Jul 29 23:23:13 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_10_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34732 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 32816 positives and 1916 negatives, size ratio=17.1273 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8280 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8376 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8519 training set positives with q<0.01 in that direction. Found 12545 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6650 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13028 PSMs with q<0.01 Iteration 2: Estimated 13155 PSMs with q<0.01 Iteration 3: Estimated 13239 PSMs with q<0.01 Iteration 4: Estimated 13293 PSMs with q<0.01 Iteration 5: Estimated 13369 PSMs with q<0.01 Iteration 6: Estimated 13378 PSMs with q<0.01 Iteration 7: Estimated 13430 PSMs with q<0.01 Iteration 8: Estimated 13458 PSMs with q<0.01 Iteration 9: Estimated 13504 PSMs with q<0.01 Iteration 10: Estimated 13571 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3926 -0.1775 -0.5279 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1108 0.0068 0.0214 isotope_error_0 0.0885 -0.0597 -0.0080 isotope_error_1 0.0312 0.0608 -0.0166 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4500 -1.3649 -1.2662 log10_evalue 0.2915 -0.3137 1.1564 hyperscore 0.5572 0.8291 0.8147 delta_hyperscore 0.1561 0.7000 -0.4405 matched_ion_num -0.7936 -0.8210 -0.8165 complementary_ions -0.2340 -0.4125 0.2605 ion_series 0.0210 -0.0045 0.1393 weighted_average_abs_fragment_ppm -0.0236 0.0438 -0.0473 length_7 0.0977 0.1235 0.1911 length_8 0.0783 0.0996 0.1481 length_9_30 -0.1373 -0.2038 -0.2620 length_31 0.0000 0.0000 0.0000 ntt 0.0038 0.0846 -0.0134 nmc 0.0000 0.0000 0.0000 charge_1 -0.0021 -0.1389 -0.1348 charge_2 0.0204 0.1390 0.0849 charge_3 -0.0356 0.0060 0.1610 charge_4 -0.0243 -0.0201 -0.1111 charge_5 0.0399 0.0404 0.0320 charge_6 0.0019 0.0021 -0.0022 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1056 0.1913 0.2271 15.9949M 0.3416 0.1937 0.3929 pred_RT_real_units 1.3946 1.6465 1.2581 unweighted_spectral_entropy -0.0066 0.0677 0.1727 delta_RT_loess -0.1793 -0.1988 0.2054 m0 Found 13300 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 32816 target PSMs and 1916 decoy PSMs. Calculating q values. Final list yields 13310 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.6780 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_POS1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_POS1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_POS1_edited.pin Started Mon Jul 29 23:23:20 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_POS1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38273 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35889 positives and 2384 negatives, size ratio=15.0541 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7612 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 7634 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7726 training set positives with q<0.01 in that direction. Found 11196 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5620 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12115 PSMs with q<0.01 Iteration 2: Estimated 12275 PSMs with q<0.01 Iteration 3: Estimated 12427 PSMs with q<0.01 Iteration 4: Estimated 12441 PSMs with q<0.01 Iteration 5: Estimated 12459 PSMs with q<0.01 Iteration 6: Estimated 12495 PSMs with q<0.01 Iteration 7: Estimated 12498 PSMs with q<0.01 Iteration 8: Estimated 12539 PSMs with q<0.01 Iteration 9: Estimated 12539 PSMs with q<0.01 Iteration 10: Estimated 12604 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2201 -0.1170 -0.2035 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0060 0.0027 0.0575 isotope_error_0 0.0942 0.0035 0.0001 isotope_error_1 -0.1146 -0.0073 -0.0685 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3673 -1.1710 -1.5328 log10_evalue 0.2943 0.7883 1.8465 hyperscore 0.8646 1.2231 0.7500 delta_hyperscore 0.1275 0.0097 -1.0349 matched_ion_num -0.6846 -0.8327 -0.5066 complementary_ions -0.5136 -0.5204 -0.5949 ion_series 0.0127 -0.1493 -0.0720 weighted_average_abs_fragment_ppm 0.0394 0.0378 0.0441 length_7 0.1334 0.0404 0.2125 length_8 0.0795 0.0642 0.0797 length_9_30 -0.2091 -0.1260 -0.2652 length_31 0.0000 0.0000 0.0000 ntt 0.1021 0.1319 -0.0319 nmc 0.0000 0.0000 0.0000 charge_1 -0.0036 0.1380 -0.0639 charge_2 0.0238 -0.0476 0.0935 charge_3 -0.1107 -0.2255 -0.1151 charge_4 0.1052 0.0644 0.0523 charge_5 0.0089 -0.0204 0.0571 charge_6 0.0933 0.0639 0.1086 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0415 0.1641 0.1637 15.9949M 0.3577 0.3729 0.4561 pred_RT_real_units 1.6947 1.4150 1.8162 unweighted_spectral_entropy 0.2762 -0.0666 0.2941 delta_RT_loess -0.5238 -0.2642 -0.5431 m0 Found 12139 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35889 target PSMs and 2384 decoy PSMs. Calculating q values. Final list yields 12154 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7180 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG6_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG6_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG6_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG6_edited.pin Started Mon Jul 29 23:23:26 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG6_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40550 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37843 positives and 2707 negatives, size ratio=13.9797 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6762 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6932 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6941 training set positives with q<0.01 in that direction. Found 10179 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7480 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10697 PSMs with q<0.01 Iteration 2: Estimated 10770 PSMs with q<0.01 Iteration 3: Estimated 10822 PSMs with q<0.01 Iteration 4: Estimated 10869 PSMs with q<0.01 Iteration 5: Estimated 10899 PSMs with q<0.01 Iteration 6: Estimated 10941 PSMs with q<0.01 Iteration 7: Estimated 10965 PSMs with q<0.01 Iteration 8: Estimated 11021 PSMs with q<0.01 Iteration 9: Estimated 11026 PSMs with q<0.01 Iteration 10: Estimated 11056 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3304 -0.3180 -0.2204 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1105 -0.0488 -0.0477 isotope_error_0 0.0994 0.0798 0.0369 isotope_error_1 0.0191 -0.0319 0.0150 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7231 -0.5440 -0.3405 log10_evalue -0.4164 -0.5661 -0.5928 hyperscore 1.0830 0.8229 1.0800 delta_hyperscore 1.3924 1.4430 1.0135 matched_ion_num -0.7738 -0.7069 -0.3945 complementary_ions -0.2690 -0.3287 -0.1017 ion_series 0.0700 -0.1154 -0.1482 weighted_average_abs_fragment_ppm -0.0004 -0.0527 -0.0346 length_7 0.1302 0.0979 0.1769 length_8 0.0957 0.0286 -0.0025 length_9_30 -0.2044 -0.0743 -0.0967 length_31 0.0000 0.0000 0.0000 ntt 0.2673 0.2956 0.1725 nmc 0.0000 0.0000 0.0000 charge_1 0.1104 0.1087 0.0329 charge_2 -0.1409 -0.0870 -0.0439 charge_3 0.0645 0.0589 0.1193 charge_4 -0.0382 -0.1609 -0.1613 charge_5 0.0544 -0.0137 -0.0575 charge_6 -0.0356 -0.0404 0.1157 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2694 0.2752 0.4195 15.9949M 0.1474 0.0824 0.1201 pred_RT_real_units 1.9876 1.8291 1.7428 unweighted_spectral_entropy 0.5175 0.2324 0.1678 delta_RT_loess -1.1315 -1.2673 -1.1990 m0 Found 10713 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37843 target PSMs and 2707 decoy PSMs. Calculating q values. Final list yields 10732 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.6270 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC1_percolator_target_psms.tsv --decoy-results-psms 20210070_HC1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC1_percolator_target_psms.tsv --decoy-results-psms 20210070_HC1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC1_edited.pin Started Mon Jul 29 23:23:34 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_HC1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 43123 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 40163 positives and 2960 negatives, size ratio=13.5686 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7145 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7108 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7137 training set positives with q<0.01 in that direction. Found 10643 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7080 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11169 PSMs with q<0.01 Iteration 2: Estimated 11403 PSMs with q<0.01 Iteration 3: Estimated 11518 PSMs with q<0.01 Iteration 4: Estimated 11622 PSMs with q<0.01 Iteration 5: Estimated 11642 PSMs with q<0.01 Iteration 6: Estimated 11637 PSMs with q<0.01 Iteration 7: Estimated 11652 PSMs with q<0.01 Iteration 8: Estimated 11731 PSMs with q<0.01 Iteration 9: Estimated 11794 PSMs with q<0.01 Iteration 10: Estimated 11755 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.1071 0.0026 0.1222 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1223 -0.0729 -0.0684 isotope_error_0 0.0021 0.0507 0.0121 isotope_error_1 0.1418 0.0290 0.0670 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5791 -1.5351 -1.5196 log10_evalue -0.8277 0.1201 0.8708 hyperscore 0.7359 0.3856 0.4096 delta_hyperscore 0.7056 0.2026 -0.9286 matched_ion_num -0.5607 -0.6782 -0.4761 complementary_ions -0.5839 -0.6149 -0.5216 ion_series -0.0675 -0.0667 -0.3955 weighted_average_abs_fragment_ppm 0.0271 -0.0390 -0.0219 length_7 0.0550 0.0167 0.1182 length_8 0.0369 -0.0540 0.0457 length_9_30 -0.0991 0.0757 -0.1314 length_31 0.0000 0.0000 0.0000 ntt -0.0079 -0.0771 -0.1157 nmc 0.0000 0.0000 0.0000 charge_1 -0.0166 -0.0117 0.0323 charge_2 0.0294 0.1334 0.0221 charge_3 0.0994 -0.1150 -0.0263 charge_4 -0.1777 -0.2104 -0.0926 charge_5 -0.0921 -0.0578 -0.1319 charge_6 0.0591 0.0504 0.1040 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0364 0.0850 0.0406 15.9949M 0.3982 0.2619 0.6141 pred_RT_real_units 1.9421 1.8877 1.7336 unweighted_spectral_entropy -0.0249 -0.0212 0.0067 delta_RT_loess -1.1501 -1.1883 -1.1550 m0 Found 11379 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 40163 target PSMs and 2960 decoy PSMs. Calculating q values. Final list yields 11410 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.3950 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_13_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_13_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_13_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_13_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_13_edited.pin Started Mon Jul 29 23:23:41 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_13_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36318 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34274 positives and 2044 negatives, size ratio=16.7681 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8283 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8086 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8151 training set positives with q<0.01 in that direction. Found 12265 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6580 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12755 PSMs with q<0.01 Iteration 2: Estimated 12914 PSMs with q<0.01 Iteration 3: Estimated 12929 PSMs with q<0.01 Iteration 4: Estimated 13003 PSMs with q<0.01 Iteration 5: Estimated 13045 PSMs with q<0.01 Iteration 6: Estimated 13075 PSMs with q<0.01 Iteration 7: Estimated 13110 PSMs with q<0.01 Iteration 8: Estimated 13132 PSMs with q<0.01 Iteration 9: Estimated 13155 PSMs with q<0.01 Iteration 10: Estimated 13175 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1327 -0.1688 -0.2149 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0156 -0.0163 -0.0668 isotope_error_0 0.1226 0.0411 0.0665 isotope_error_1 -0.1230 -0.0278 0.0038 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.0969 -1.5093 -1.2114 log10_evalue -1.9106 -1.5300 -0.8422 hyperscore 0.5731 0.5527 1.1572 delta_hyperscore 1.0410 1.2415 0.6223 matched_ion_num -0.7023 -0.5488 -0.6765 complementary_ions 0.0498 -0.0082 -0.1741 ion_series -0.0866 0.0518 -0.0040 weighted_average_abs_fragment_ppm 0.0590 -0.0082 0.0415 length_7 0.0357 -0.0141 0.0135 length_8 0.1006 0.0888 0.0649 length_9_30 -0.1643 -0.0939 -0.1018 length_31 0.0000 0.0000 0.0000 ntt 0.1452 0.2256 0.1405 nmc 0.0000 0.0000 0.0000 charge_1 -0.0357 -0.0502 0.0450 charge_2 -0.0225 -0.0126 -0.0373 charge_3 0.0816 0.0812 -0.0715 charge_4 0.0873 0.0905 0.1041 charge_5 0.0381 0.0777 0.0226 charge_6 0.0015 0.0147 0.0128 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1608 0.0611 0.1853 15.9949M 0.3866 0.2009 0.3122 pred_RT_real_units 1.5393 1.5108 1.4952 unweighted_spectral_entropy 0.0279 0.0111 -0.1348 delta_RT_loess -0.2901 -0.7132 -0.3523 m0 Found 12867 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34274 target PSMs and 2044 decoy PSMs. Calculating q values. Final list yields 12878 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9090 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS17_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS17_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS17_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS17_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS17_edited.pin Started Mon Jul 29 23:23:48 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS17_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 43089 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 40364 positives and 2725 negatives, size ratio=14.8125 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7823 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7944 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7755 training set positives with q<0.01 in that direction. Found 11757 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7910 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12225 PSMs with q<0.01 Iteration 2: Estimated 12334 PSMs with q<0.01 Iteration 3: Estimated 12398 PSMs with q<0.01 Iteration 4: Estimated 12533 PSMs with q<0.01 Iteration 5: Estimated 12554 PSMs with q<0.01 Iteration 6: Estimated 12588 PSMs with q<0.01 Iteration 7: Estimated 12617 PSMs with q<0.01 Iteration 8: Estimated 12610 PSMs with q<0.01 Iteration 9: Estimated 12637 PSMs with q<0.01 Iteration 10: Estimated 12628 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3586 0.0029 -0.2049 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0437 -0.1207 -0.0362 isotope_error_0 -0.0583 -0.0380 0.0036 isotope_error_1 0.1178 0.1861 0.0389 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1294 -1.7416 -1.2485 log10_evalue 0.2538 0.7663 -0.1998 hyperscore 1.4607 0.6237 0.5705 delta_hyperscore 0.4851 -0.1605 1.2418 matched_ion_num -0.6987 -0.7237 -0.8251 complementary_ions -0.2512 -0.5569 -0.4036 ion_series 0.1383 -0.1039 -0.0900 weighted_average_abs_fragment_ppm 0.0163 0.0160 -0.0557 length_7 0.1782 0.0912 0.1080 length_8 0.0653 0.0531 -0.0508 length_9_30 -0.2096 -0.1356 0.0180 length_31 0.0000 0.0000 0.0000 ntt -0.1286 0.4289 0.1472 nmc 0.0000 0.0000 0.0000 charge_1 -0.0730 -0.0331 0.0556 charge_2 0.0748 -0.0008 0.1005 charge_3 0.0384 -0.0483 -0.1120 charge_4 -0.2034 0.1182 -0.3941 charge_5 0.1726 0.0820 0.0570 charge_6 0.1883 0.1620 0.1259 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2977 0.0448 0.0018 15.9949M 0.2095 0.2593 0.4418 pred_RT_real_units 1.7773 2.2570 1.5907 unweighted_spectral_entropy 0.0621 0.1378 0.0917 delta_RT_loess -0.7197 -1.0130 -0.7241 m0 Found 12070 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 40364 target PSMs and 2725 decoy PSMs. Calculating q values. Final list yields 12077 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.8580 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS28_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS28_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS28_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS28_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS28_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS28_edited.pin Started Mon Jul 29 23:23:54 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS28_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 37905 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35593 positives and 2312 negatives, size ratio=15.3949 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7679 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7669 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8106 training set positives with q<0.01 in that direction. Found 11698 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6370 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12090 PSMs with q<0.01 Iteration 2: Estimated 12148 PSMs with q<0.01 Iteration 3: Estimated 12152 PSMs with q<0.01 Iteration 4: Estimated 12168 PSMs with q<0.01 Iteration 5: Estimated 12176 PSMs with q<0.01 Iteration 6: Estimated 12195 PSMs with q<0.01 Iteration 7: Estimated 12203 PSMs with q<0.01 Iteration 8: Estimated 12200 PSMs with q<0.01 Iteration 9: Estimated 12232 PSMs with q<0.01 Iteration 10: Estimated 12223 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2736 -0.5771 -0.3268 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0365 0.0134 -0.0537 isotope_error_0 0.1186 0.1354 0.1467 isotope_error_1 -0.1793 -0.1709 -0.1033 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3442 -0.8569 -0.9466 log10_evalue -0.3216 0.3116 1.5729 hyperscore 1.0709 0.8425 0.6222 delta_hyperscore 0.9829 1.4372 0.2255 matched_ion_num -0.7628 -0.8480 -0.9822 complementary_ions -0.3892 -0.6647 -0.7674 ion_series 0.0551 0.1514 -0.1513 weighted_average_abs_fragment_ppm -0.0763 -0.0303 -0.0142 length_7 0.1108 0.1379 0.1183 length_8 0.0312 0.0447 0.1164 length_9_30 -0.0750 -0.1329 -0.2176 length_31 0.0000 0.0000 0.0000 ntt 0.1948 0.1203 0.2127 nmc 0.0000 0.0000 0.0000 charge_1 0.0076 -0.1349 0.0342 charge_2 0.0052 -0.0202 -0.0190 charge_3 -0.1050 0.2006 0.0272 charge_4 0.1868 0.1024 -0.0055 charge_5 -0.1436 0.1312 -0.1952 charge_6 0.1057 0.0787 0.0690 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0453 -0.1430 0.0960 15.9949M 0.2054 0.0514 0.0956 pred_RT_real_units 1.7239 1.5559 1.7492 unweighted_spectral_entropy 0.0367 0.0854 0.1650 delta_RT_loess -0.5506 -0.6115 -0.5275 m0 Found 11884 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35593 target PSMs and 2312 decoy PSMs. Calculating q values. Final list yields 11894 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7150 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC2_percolator_target_psms.tsv --decoy-results-psms 20210070_HC2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_HC2_percolator_target_psms.tsv --decoy-results-psms 20210070_HC2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_HC2_edited.pin Started Mon Jul 29 23:24:01 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_HC2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 32255 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 30407 positives and 1848 negatives, size ratio=16.454 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7058 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7379 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7190 training set positives with q<0.01 in that direction. Found 10765 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5290 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11351 PSMs with q<0.01 Iteration 2: Estimated 11521 PSMs with q<0.01 Iteration 3: Estimated 11626 PSMs with q<0.01 Iteration 4: Estimated 11669 PSMs with q<0.01 Iteration 5: Estimated 11685 PSMs with q<0.01 Iteration 6: Estimated 11724 PSMs with q<0.01 Iteration 7: Estimated 11724 PSMs with q<0.01 Iteration 8: Estimated 11741 PSMs with q<0.01 Iteration 9: Estimated 11735 PSMs with q<0.01 Iteration 10: Estimated 11757 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0930 -0.2528 -0.0876 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0663 -0.0232 -0.0703 isotope_error_0 0.1505 0.1042 0.1878 isotope_error_1 -0.0940 -0.0929 -0.1326 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.8989 -0.4872 -1.0631 log10_evalue 0.5986 1.2572 -0.1189 hyperscore 0.7864 1.0226 0.8610 delta_hyperscore 0.3134 -0.2242 0.7105 matched_ion_num -0.6590 -0.5523 -0.7017 complementary_ions -0.5070 -0.3765 -0.4894 ion_series 0.0515 -0.0444 -0.2849 weighted_average_abs_fragment_ppm -0.0378 -0.1371 0.0225 length_7 0.0432 -0.1439 -0.0285 length_8 -0.0220 -0.0130 -0.0248 length_9_30 0.0142 0.2089 0.0449 length_31 0.0000 0.0000 0.0000 ntt 0.0493 -0.1524 0.0972 nmc 0.0000 0.0000 0.0000 charge_1 -0.0294 0.1394 0.0316 charge_2 -0.0758 -0.0757 -0.0126 charge_3 0.1432 -0.1119 -0.0500 charge_4 0.1146 -0.0430 0.0133 charge_5 0.0618 -0.0119 0.0106 charge_6 -0.0089 -0.0060 -0.0064 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0907 0.1218 0.0023 15.9949M 0.2143 0.1906 0.3098 pred_RT_real_units 1.5540 1.7278 1.6272 unweighted_spectral_entropy 0.0159 0.0693 0.0216 delta_RT_loess -0.3148 -0.4092 -0.5274 m0 Found 11322 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 30407 target PSMs and 1848 decoy PSMs. Calculating q values. Final list yields 11382 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.2690 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC7_percolator_target_psms.tsv --decoy-results-psms 20210155_HC7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC7_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC7_percolator_target_psms.tsv --decoy-results-psms 20210155_HC7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC7_edited.pin Started Mon Jul 29 23:24:09 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC7_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40934 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38187 positives and 2747 negatives, size ratio=13.9013 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6649 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6747 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6820 training set positives with q<0.01 in that direction. Found 10064 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7540 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10493 PSMs with q<0.01 Iteration 2: Estimated 10610 PSMs with q<0.01 Iteration 3: Estimated 10641 PSMs with q<0.01 Iteration 4: Estimated 10699 PSMs with q<0.01 Iteration 5: Estimated 10772 PSMs with q<0.01 Iteration 6: Estimated 10810 PSMs with q<0.01 Iteration 7: Estimated 10829 PSMs with q<0.01 Iteration 8: Estimated 10832 PSMs with q<0.01 Iteration 9: Estimated 10873 PSMs with q<0.01 Iteration 10: Estimated 10881 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1092 -0.3222 -0.0304 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0711 0.0020 -0.0141 isotope_error_0 0.0379 0.0586 0.0469 isotope_error_1 -0.1274 -0.0686 -0.0363 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6355 -1.5304 -1.5807 log10_evalue -0.2687 -1.8332 -1.0697 hyperscore 0.5344 0.3481 0.3401 delta_hyperscore 0.4312 2.5253 1.1010 matched_ion_num -0.5989 -0.6409 -0.4069 complementary_ions -0.6803 -0.4204 -0.5215 ion_series -0.2063 0.0604 -0.1625 weighted_average_abs_fragment_ppm -0.0228 -0.0144 -0.0752 length_7 -0.0145 0.0715 0.0391 length_8 -0.0041 -0.0188 -0.0299 length_9_30 0.0259 -0.0176 0.0474 length_31 0.0000 0.0000 0.0000 ntt 0.1087 0.1310 0.1045 nmc 0.0000 0.0000 0.0000 charge_1 -0.1014 0.0254 -0.0482 charge_2 0.0061 -0.0715 0.0117 charge_3 0.2381 0.1207 0.1275 charge_4 -0.0002 0.0066 -0.0652 charge_5 -0.1514 -0.1155 -0.0715 charge_6 0.0271 0.0303 0.0633 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1362 0.1021 0.1649 15.9949M 0.1319 0.0274 0.1632 pred_RT_real_units 1.9655 1.5234 1.5957 unweighted_spectral_entropy 0.2044 0.2109 0.0060 delta_RT_loess -1.2179 -0.9315 -1.4267 m0 Found 10418 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38187 target PSMs and 2747 decoy PSMs. Calculating q values. Final list yields 10434 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.1270 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC4_percolator_target_psms.tsv --decoy-results-psms 20210155_HC4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC4_percolator_target_psms.tsv --decoy-results-psms 20210155_HC4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC4_edited.pin Started Mon Jul 29 23:24:16 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38731 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35999 positives and 2732 negatives, size ratio=13.1768 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 5728 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 5849 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 5906 training set positives with q<0.01 in that direction. Found 8696 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6020 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9150 PSMs with q<0.01 Iteration 2: Estimated 9300 PSMs with q<0.01 Iteration 3: Estimated 9447 PSMs with q<0.01 Iteration 4: Estimated 9645 PSMs with q<0.01 Iteration 5: Estimated 9697 PSMs with q<0.01 Iteration 6: Estimated 9723 PSMs with q<0.01 Iteration 7: Estimated 9813 PSMs with q<0.01 Iteration 8: Estimated 9847 PSMs with q<0.01 Iteration 9: Estimated 9862 PSMs with q<0.01 Iteration 10: Estimated 9892 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2745 -0.2767 -0.2974 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0730 -0.0727 0.0457 isotope_error_0 0.1149 0.1507 0.1908 isotope_error_1 -0.2151 -0.0829 -0.2678 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7423 -0.6346 -0.6180 log10_evalue 0.8766 -0.6375 0.9909 hyperscore 0.6539 0.8502 0.8070 delta_hyperscore -0.4292 0.9995 -0.3067 matched_ion_num -0.3677 -0.6048 -0.3508 complementary_ions 0.0680 -0.3590 -0.1620 ion_series -0.1321 -0.4370 -0.2292 weighted_average_abs_fragment_ppm -0.1266 -0.0008 -0.0535 length_7 -0.0462 0.1308 0.0762 length_8 -0.1803 -0.0374 0.0132 length_9_30 0.3180 -0.0418 -0.0422 length_31 0.0000 0.0000 0.0000 ntt -0.0690 0.1040 -0.0818 nmc 0.0000 0.0000 0.0000 charge_1 0.0903 0.0505 -0.0739 charge_2 0.2136 0.0045 0.1732 charge_3 -0.3184 -0.0567 -0.0550 charge_4 -0.3183 -0.1477 -0.1866 charge_5 -0.1767 0.0745 -0.0725 charge_6 0.0088 0.0767 0.0824 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0858 0.1865 0.2381 15.9949M 0.2471 0.5122 0.3252 pred_RT_real_units 1.1069 1.4820 1.3431 unweighted_spectral_entropy 0.0274 0.0752 0.1479 delta_RT_loess -1.2406 -1.2506 -1.0839 m0 Found 8989 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35999 target PSMs and 2732 decoy PSMs. Calculating q values. Final list yields 9009 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.8140 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS14_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS14_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS14_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS14_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS14_edited.pin Started Mon Jul 29 23:24:21 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS14_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39530 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37089 positives and 2441 negatives, size ratio=15.1942 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7705 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7644 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7871 training set positives with q<0.01 in that direction. Found 11575 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6830 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12022 PSMs with q<0.01 Iteration 2: Estimated 12145 PSMs with q<0.01 Iteration 3: Estimated 12223 PSMs with q<0.01 Iteration 4: Estimated 12252 PSMs with q<0.01 Iteration 5: Estimated 12336 PSMs with q<0.01 Iteration 6: Estimated 12401 PSMs with q<0.01 Iteration 7: Estimated 12456 PSMs with q<0.01 Iteration 8: Estimated 12481 PSMs with q<0.01 Iteration 9: Estimated 12516 PSMs with q<0.01 Iteration 10: Estimated 12568 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1530 -0.1376 -0.0070 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0572 0.0013 0.0417 isotope_error_0 0.0442 0.0186 0.0117 isotope_error_1 0.0177 -0.0226 -0.0628 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3038 -1.3205 -1.5272 log10_evalue -0.5880 -0.0296 -0.5055 hyperscore 1.1339 0.7627 0.9947 delta_hyperscore 1.3409 0.5711 0.6042 matched_ion_num -0.9745 -0.7767 -0.7668 complementary_ions -0.5795 -0.5262 -0.1238 ion_series -0.0287 0.0255 -0.2863 weighted_average_abs_fragment_ppm 0.0335 0.0271 0.0173 length_7 0.1695 0.1057 0.1012 length_8 0.0736 0.0446 0.0591 length_9_30 -0.2203 -0.1386 -0.1489 length_31 0.0000 0.0000 0.0000 ntt 0.0109 0.0705 -0.0393 nmc 0.0000 0.0000 0.0000 charge_1 0.0322 0.0075 0.0485 charge_2 -0.0738 -0.0587 -0.0288 charge_3 0.0842 0.1853 0.0697 charge_4 0.0240 -0.1242 -0.1823 charge_5 -0.0602 -0.0525 -0.0197 charge_6 0.0376 0.0460 0.0103 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1716 -0.1019 0.1191 15.9949M 0.3216 0.4158 0.5951 pred_RT_real_units 1.7081 1.6533 1.6042 unweighted_spectral_entropy -0.1044 -0.0246 0.0571 delta_RT_loess -0.6411 -0.7070 -0.4712 m0 Found 12352 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37089 target PSMs and 2441 decoy PSMs. Calculating q values. Final list yields 12359 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7290 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC12_percolator_target_psms.tsv --decoy-results-psms 20210155_HC12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC12_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC12_percolator_target_psms.tsv --decoy-results-psms 20210155_HC12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC12_edited.pin Started Mon Jul 29 23:24:28 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC12_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38484 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36027 positives and 2457 negatives, size ratio=14.663 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7204 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7279 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7307 training set positives with q<0.01 in that direction. Found 10844 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6170 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11247 PSMs with q<0.01 Iteration 2: Estimated 11358 PSMs with q<0.01 Iteration 3: Estimated 11471 PSMs with q<0.01 Iteration 4: Estimated 11556 PSMs with q<0.01 Iteration 5: Estimated 11647 PSMs with q<0.01 Iteration 6: Estimated 11652 PSMs with q<0.01 Iteration 7: Estimated 11716 PSMs with q<0.01 Iteration 8: Estimated 11741 PSMs with q<0.01 Iteration 9: Estimated 11755 PSMs with q<0.01 Iteration 10: Estimated 11768 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3064 -0.2397 -0.2238 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0472 -0.1249 -0.0413 isotope_error_0 0.1321 0.1298 0.0308 isotope_error_1 -0.2064 0.0016 0.0142 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3741 -1.8795 -1.0623 log10_evalue -0.2533 -0.1915 -0.4221 hyperscore 0.3792 0.6562 0.9486 delta_hyperscore 0.3241 0.5728 0.5603 matched_ion_num -0.5102 -0.7604 -0.4395 complementary_ions -0.2705 -0.3628 -0.2361 ion_series -0.1643 -0.2155 -0.0956 weighted_average_abs_fragment_ppm -0.0562 -0.0533 -0.0027 length_7 0.1225 0.1972 0.0771 length_8 0.0158 -0.0168 0.0305 length_9_30 -0.0736 -0.0836 -0.0865 length_31 0.0000 0.0000 0.0000 ntt 0.1991 -0.1199 0.0813 nmc 0.0000 0.0000 0.0000 charge_1 0.1001 0.1238 0.0704 charge_2 -0.0928 -0.0732 -0.0201 charge_3 -0.0054 0.0026 -0.0857 charge_4 -0.0874 -0.1286 -0.0662 charge_5 0.1068 -0.0851 0.0601 charge_6 -0.0052 -0.0387 -0.0029 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2841 0.3083 0.2675 15.9949M 0.4124 0.5284 0.1917 pred_RT_real_units 1.4505 1.6159 1.2123 unweighted_spectral_entropy -0.0119 0.2775 0.0381 delta_RT_loess -0.7993 -0.6187 -0.8527 m0 Found 11188 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36027 target PSMs and 2457 decoy PSMs. Calculating q values. Final list yields 11192 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7460 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS25_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS25_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS25_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS25_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS25_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS25_edited.pin Started Mon Jul 29 23:24:35 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS25_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40951 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38388 positives and 2563 negatives, size ratio=14.9778 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6606 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6723 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6959 training set positives with q<0.01 in that direction. Found 10144 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7130 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10654 PSMs with q<0.01 Iteration 2: Estimated 10848 PSMs with q<0.01 Iteration 3: Estimated 10927 PSMs with q<0.01 Iteration 4: Estimated 10990 PSMs with q<0.01 Iteration 5: Estimated 11059 PSMs with q<0.01 Iteration 6: Estimated 11116 PSMs with q<0.01 Iteration 7: Estimated 11161 PSMs with q<0.01 Iteration 8: Estimated 11184 PSMs with q<0.01 Iteration 9: Estimated 11190 PSMs with q<0.01 Iteration 10: Estimated 11212 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0203 -0.1941 -0.1006 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1259 -0.0574 -0.0818 isotope_error_0 0.0876 0.0507 -0.0248 isotope_error_1 0.0501 0.0105 0.1258 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.0867 -0.8909 0.1425 log10_evalue 0.6835 0.6914 1.5391 hyperscore 1.0645 0.7853 1.2531 delta_hyperscore -0.0927 0.5019 0.8230 matched_ion_num -0.4211 -0.6724 -0.7747 complementary_ions -0.4667 -0.6024 -0.7312 ion_series -0.2805 -0.2175 -0.3596 weighted_average_abs_fragment_ppm -0.0322 -0.0000 -0.0198 length_7 0.2079 0.1620 0.1980 length_8 0.0361 0.0435 0.0355 length_9_30 -0.1577 -0.1532 -0.1565 length_31 0.0000 0.0000 0.0000 ntt 0.0855 -0.0567 -0.2416 nmc 0.0000 0.0000 0.0000 charge_1 -0.0071 -0.0749 -0.0912 charge_2 -0.0023 -0.0890 0.0118 charge_3 0.0082 0.3278 0.1776 charge_4 0.0466 0.0151 -0.0149 charge_5 -0.0679 -0.0338 -0.0452 charge_6 0.0668 0.1246 0.1049 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1680 0.2359 0.1807 15.9949M 0.2711 0.0344 0.2142 pred_RT_real_units 1.4520 1.5039 1.8825 unweighted_spectral_entropy 0.0625 -0.0115 0.4267 delta_RT_loess -0.7457 -0.8690 -1.0914 m0 Found 10828 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38388 target PSMs and 2563 decoy PSMs. Calculating q values. Final list yields 10838 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4820 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_3_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_3_edited.pin Started Mon Jul 29 23:24:41 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_N_3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 34311 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 32382 positives and 1929 negatives, size ratio=16.7869 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8271 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8606 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8083 training set positives with q<0.01 in that direction. Found 12576 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4330 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13009 PSMs with q<0.01 Iteration 2: Estimated 13233 PSMs with q<0.01 Iteration 3: Estimated 13382 PSMs with q<0.01 Iteration 4: Estimated 13451 PSMs with q<0.01 Iteration 5: Estimated 13498 PSMs with q<0.01 Iteration 6: Estimated 13580 PSMs with q<0.01 Iteration 7: Estimated 13688 PSMs with q<0.01 Iteration 8: Estimated 13766 PSMs with q<0.01 Iteration 9: Estimated 13796 PSMs with q<0.01 Iteration 10: Estimated 13864 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2761 -0.2276 -0.3513 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0824 -0.0262 0.0860 isotope_error_0 0.0258 -0.0013 -0.0744 isotope_error_1 0.0692 0.0330 -0.0174 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2245 -1.0075 -1.9400 log10_evalue 0.0479 -0.5177 -0.4060 hyperscore 1.1574 1.0819 1.1378 delta_hyperscore 0.4154 1.0467 1.0313 matched_ion_num -0.4299 -0.4207 -0.6456 complementary_ions -0.1584 -0.2662 -0.4160 ion_series -0.2963 -0.2504 -0.1344 weighted_average_abs_fragment_ppm -0.0373 -0.0574 -0.0156 length_7 0.0328 -0.0075 0.1012 length_8 0.1114 0.0537 0.1001 length_9_30 -0.1354 -0.0363 -0.1696 length_31 0.0000 0.0000 0.0000 ntt -0.0494 0.0978 -0.0201 nmc 0.0000 0.0000 0.0000 charge_1 0.0180 0.0253 -0.0347 charge_2 -0.0452 -0.0302 0.0304 charge_3 -0.0447 0.0080 -0.0393 charge_4 0.1856 0.0206 0.1146 charge_5 0.1370 -0.0369 0.0029 charge_6 0.0202 0.0158 -0.0036 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.3049 0.2729 0.0658 15.9949M 0.4799 0.4694 0.4574 pred_RT_real_units 1.2411 1.3078 1.0886 unweighted_spectral_entropy 0.1386 0.1420 0.1431 delta_RT_loess 0.2327 0.1546 0.4747 m0 Found 13367 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 32382 target PSMs and 1929 decoy PSMs. Calculating q values. Final list yields 13375 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.0490 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC15_percolator_target_psms.tsv --decoy-results-psms 20210155_HC15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC15_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC15_percolator_target_psms.tsv --decoy-results-psms 20210155_HC15_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC15_edited.pin Started Mon Jul 29 23:24:48 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC15_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 43006 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 40100 positives and 2906 negatives, size ratio=13.799 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6747 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6821 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6914 training set positives with q<0.01 in that direction. Found 10141 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6500 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10702 PSMs with q<0.01 Iteration 2: Estimated 10780 PSMs with q<0.01 Iteration 3: Estimated 10867 PSMs with q<0.01 Iteration 4: Estimated 10950 PSMs with q<0.01 Iteration 5: Estimated 11028 PSMs with q<0.01 Iteration 6: Estimated 11034 PSMs with q<0.01 Iteration 7: Estimated 11069 PSMs with q<0.01 Iteration 8: Estimated 11090 PSMs with q<0.01 Iteration 9: Estimated 11131 PSMs with q<0.01 Iteration 10: Estimated 11150 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3121 -0.1357 -0.2556 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1276 -0.0067 -0.1177 isotope_error_0 0.0036 0.0010 0.0625 isotope_error_1 0.1479 0.0069 0.0697 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.4513 -0.8179 -2.0367 log10_evalue -0.5226 0.1284 -0.9376 hyperscore 0.8969 1.3096 0.8584 delta_hyperscore 0.8769 -0.1291 0.3169 matched_ion_num -0.4692 -0.3756 -0.3606 complementary_ions -0.2377 -0.2245 -0.4453 ion_series 0.0275 -0.0998 0.0307 weighted_average_abs_fragment_ppm -0.0252 -0.0464 0.0641 length_7 0.1140 -0.0152 0.1122 length_8 0.0612 -0.0452 0.0225 length_9_30 -0.1368 0.0856 -0.1281 length_31 0.0000 0.0000 0.0000 ntt 0.2380 0.1025 0.3206 nmc 0.0000 0.0000 0.0000 charge_1 0.0066 0.0187 0.1023 charge_2 -0.0089 0.1924 0.0340 charge_3 -0.0096 -0.1733 -0.1045 charge_4 0.0781 -0.3541 -0.2459 charge_5 -0.0879 -0.0655 -0.0764 charge_6 0.0145 -0.0278 0.0679 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1193 0.4008 0.2515 15.9949M 0.2041 0.3542 0.4801 pred_RT_real_units 1.7058 1.9262 2.0929 unweighted_spectral_entropy 0.0612 -0.0476 -0.0387 delta_RT_loess -0.8783 -1.2863 -1.4266 m0 Found 10728 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 40100 target PSMs and 2906 decoy PSMs. Calculating q values. Final list yields 10729 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2990 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS22_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS22_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS22_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS22_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS22_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS22_edited.pin Started Mon Jul 29 23:24:55 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS22_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40654 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38113 positives and 2541 negatives, size ratio=14.9992 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7469 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7617 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7517 training set positives with q<0.01 in that direction. Found 11208 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7300 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11831 PSMs with q<0.01 Iteration 2: Estimated 11998 PSMs with q<0.01 Iteration 3: Estimated 12058 PSMs with q<0.01 Iteration 4: Estimated 12144 PSMs with q<0.01 Iteration 5: Estimated 12228 PSMs with q<0.01 Iteration 6: Estimated 12236 PSMs with q<0.01 Iteration 7: Estimated 12233 PSMs with q<0.01 Iteration 8: Estimated 12262 PSMs with q<0.01 Iteration 9: Estimated 12254 PSMs with q<0.01 Iteration 10: Estimated 12277 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1414 -0.0394 -0.1961 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0116 0.0252 -0.0786 isotope_error_0 0.0604 -0.0078 0.0266 isotope_error_1 -0.0548 -0.0210 0.0628 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2059 -1.3633 -1.5551 log10_evalue -1.2632 -1.7207 -1.1749 hyperscore 1.1343 0.8058 0.6734 delta_hyperscore 1.1563 1.9223 1.0856 matched_ion_num -0.6304 -0.7055 -0.2743 complementary_ions -0.0856 -0.3295 -0.3065 ion_series 0.0089 -0.0866 -0.2950 weighted_average_abs_fragment_ppm -0.0116 0.0506 0.0204 length_7 0.0885 0.0871 0.0919 length_8 0.1522 -0.0530 0.1336 length_9_30 -0.2429 -0.0159 -0.2370 length_31 0.0000 0.0000 0.0000 ntt -0.0229 -0.0395 -0.0559 nmc 0.0000 0.0000 0.0000 charge_1 -0.0268 0.0450 -0.1572 charge_2 -0.1531 -0.0394 0.0662 charge_3 0.3368 -0.0194 0.1556 charge_4 0.0125 0.0314 -0.0143 charge_5 0.0503 -0.0441 0.0806 charge_6 0.0671 0.0339 0.1455 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0620 0.1608 -0.0619 15.9949M 0.0917 0.2260 0.3125 pred_RT_real_units 1.4900 1.6211 1.3495 unweighted_spectral_entropy 0.0491 0.1016 0.2322 delta_RT_loess -0.6500 -0.7309 -0.6707 m0 Found 11667 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38113 target PSMs and 2541 decoy PSMs. Calculating q values. Final list yields 11702 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.6660 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC1_20210513132744_percolator_target_psms.tsv --decoy-results-psms 20210155_HC1_20210513132744_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC1_20210513132744_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC1_20210513132744_percolator_target_psms.tsv --decoy-results-psms 20210155_HC1_20210513132744_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC1_20210513132744_edited.pin Started Mon Jul 29 23:25:01 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC1_20210513132744_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38449 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35783 positives and 2666 negatives, size ratio=13.422 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6430 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6338 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6312 training set positives with q<0.01 in that direction. Found 9505 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6870 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9937 PSMs with q<0.01 Iteration 2: Estimated 10074 PSMs with q<0.01 Iteration 3: Estimated 10124 PSMs with q<0.01 Iteration 4: Estimated 10178 PSMs with q<0.01 Iteration 5: Estimated 10184 PSMs with q<0.01 Iteration 6: Estimated 10170 PSMs with q<0.01 Iteration 7: Estimated 10203 PSMs with q<0.01 Iteration 8: Estimated 10203 PSMs with q<0.01 Iteration 9: Estimated 10247 PSMs with q<0.01 Iteration 10: Estimated 10283 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1745 -0.2540 -0.0999 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0587 -0.0462 0.0237 isotope_error_0 0.0364 0.0406 -0.0207 isotope_error_1 0.0291 0.0092 -0.0050 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.6197 -1.0697 -1.5871 log10_evalue 0.7127 0.0583 -0.0184 hyperscore 0.6451 0.7385 0.6261 delta_hyperscore 0.4073 -0.1022 0.3091 matched_ion_num -0.8172 -0.4158 -0.5668 complementary_ions -0.1550 -0.1520 -0.2077 ion_series -0.0056 -0.0932 -0.0460 weighted_average_abs_fragment_ppm 0.0179 -0.0590 -0.0140 length_7 0.0874 0.1452 0.0973 length_8 0.1685 0.0088 0.0314 length_9_30 -0.2892 -0.0870 -0.1041 length_31 0.0000 0.0000 0.0000 ntt 0.0471 0.1703 0.2341 nmc 0.0000 0.0000 0.0000 charge_1 -0.1089 -0.0567 0.0662 charge_2 -0.0107 0.0923 0.0160 charge_3 0.1710 -0.0224 -0.1120 charge_4 0.0474 -0.0478 -0.0176 charge_5 0.0803 -0.0526 -0.1053 charge_6 0.0224 0.0343 0.0177 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0996 0.0797 0.2559 15.9949M 0.3090 0.0389 0.1406 pred_RT_real_units 1.7143 1.4855 1.7002 unweighted_spectral_entropy 0.0912 -0.0280 0.1979 delta_RT_loess -0.9745 -0.9632 -0.8984 m0 Found 9927 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35783 target PSMs and 2666 decoy PSMs. Calculating q values. Final list yields 9937 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.0930 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_7_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_7_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_7_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_7_edited.pin Started Mon Jul 29 23:25:07 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_7_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 29336 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 27834 positives and 1502 negatives, size ratio=18.5313 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7131 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7427 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7166 training set positives with q<0.01 in that direction. Found 10879 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5540 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11331 PSMs with q<0.01 Iteration 2: Estimated 11594 PSMs with q<0.01 Iteration 3: Estimated 11711 PSMs with q<0.01 Iteration 4: Estimated 11758 PSMs with q<0.01 Iteration 5: Estimated 11751 PSMs with q<0.01 Iteration 6: Estimated 11807 PSMs with q<0.01 Iteration 7: Estimated 11834 PSMs with q<0.01 Iteration 8: Estimated 11832 PSMs with q<0.01 Iteration 9: Estimated 11836 PSMs with q<0.01 Iteration 10: Estimated 11832 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3362 -0.3306 -0.2699 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0065 -0.0227 0.0904 isotope_error_0 0.1234 -0.0139 -0.0433 isotope_error_1 -0.1356 0.0436 -0.0596 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.3746 -0.7080 -1.1573 log10_evalue -0.3941 -0.0932 -0.1539 hyperscore 1.3795 1.1199 0.9209 delta_hyperscore 1.1650 0.4399 0.8651 matched_ion_num -0.7897 -0.5102 -0.7390 complementary_ions -0.4352 -0.1799 -0.4815 ion_series 0.0107 0.1844 -0.0220 weighted_average_abs_fragment_ppm -0.0013 -0.0255 -0.0368 length_7 0.1594 0.1379 0.2243 length_8 -0.0435 0.0075 -0.0213 length_9_30 -0.0209 -0.0620 -0.0654 length_31 0.0000 0.0000 0.0000 ntt -0.1572 -0.0313 0.1540 nmc 0.0000 0.0000 0.0000 charge_1 -0.0246 0.0933 -0.0184 charge_2 0.0536 -0.0279 0.0850 charge_3 -0.0696 -0.1371 -0.1367 charge_4 0.0131 -0.0206 -0.0257 charge_5 -0.0007 -0.0149 -0.0081 charge_6 0.0014 0.0004 0.0192 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0195 0.1748 0.2403 15.9949M 0.1555 0.1287 0.1906 pred_RT_real_units 1.4104 1.1749 1.2883 unweighted_spectral_entropy 0.2072 -0.1298 0.0210 delta_RT_loess -0.1392 -0.0354 0.1131 m0 Found 11235 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 27834 target PSMs and 1502 decoy PSMs. Calculating q values. Final list yields 11260 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.3870 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG5_edited.pin Started Mon Jul 29 23:25:14 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40472 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37716 positives and 2756 negatives, size ratio=13.6851 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6261 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6361 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6479 training set positives with q<0.01 in that direction. Found 9516 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6950 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9829 PSMs with q<0.01 Iteration 2: Estimated 9983 PSMs with q<0.01 Iteration 3: Estimated 9978 PSMs with q<0.01 Iteration 4: Estimated 10010 PSMs with q<0.01 Iteration 5: Estimated 10083 PSMs with q<0.01 Iteration 6: Estimated 10091 PSMs with q<0.01 Iteration 7: Estimated 10117 PSMs with q<0.01 Iteration 8: Estimated 10150 PSMs with q<0.01 Iteration 9: Estimated 10182 PSMs with q<0.01 Iteration 10: Estimated 10206 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1207 -0.1041 -0.1535 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0328 -0.0329 -0.0389 isotope_error_0 -0.0191 0.0105 -0.0136 isotope_error_1 -0.0174 0.0272 0.0616 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.1668 -0.7165 -0.4984 log10_evalue 0.1422 -0.7601 0.7312 hyperscore 0.6967 0.9106 0.3973 delta_hyperscore 0.8400 0.3696 -0.5588 matched_ion_num -0.7240 -0.4198 -0.3173 complementary_ions -0.3507 0.0561 -0.0298 ion_series -0.2603 -0.2137 -0.1014 weighted_average_abs_fragment_ppm -0.0606 -0.0465 -0.0022 length_7 0.0137 -0.0216 0.0202 length_8 0.0133 0.0786 0.0987 length_9_30 0.0052 -0.0609 -0.1409 length_31 0.0000 0.0000 0.0000 ntt 0.2674 0.2984 0.0952 nmc 0.0000 0.0000 0.0000 charge_1 0.1150 0.1182 -0.1395 charge_2 -0.0199 -0.0394 0.0163 charge_3 -0.0823 -0.0966 0.1611 charge_4 -0.1623 -0.0769 0.0598 charge_5 -0.0500 -0.0777 0.0049 charge_6 0.1120 0.1276 0.2428 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0674 0.1412 0.1088 15.9949M 0.3942 0.4200 0.2654 pred_RT_real_units 1.6810 1.6040 1.8718 unweighted_spectral_entropy 0.0024 -0.1081 0.1145 delta_RT_loess -1.3173 -1.2283 -1.4609 m0 Found 9989 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37716 target PSMs and 2756 decoy PSMs. Calculating q values. Final list yields 9989 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.8760 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG3_edited.pin Started Mon Jul 29 23:25:20 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_NEG3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 35721 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33562 positives and 2159 negatives, size ratio=15.5452 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7676 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7631 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7729 training set positives with q<0.01 in that direction. Found 11532 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6340 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12070 PSMs with q<0.01 Iteration 2: Estimated 12204 PSMs with q<0.01 Iteration 3: Estimated 12263 PSMs with q<0.01 Iteration 4: Estimated 12353 PSMs with q<0.01 Iteration 5: Estimated 12414 PSMs with q<0.01 Iteration 6: Estimated 12477 PSMs with q<0.01 Iteration 7: Estimated 12470 PSMs with q<0.01 Iteration 8: Estimated 12481 PSMs with q<0.01 Iteration 9: Estimated 12511 PSMs with q<0.01 Iteration 10: Estimated 12511 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0227 -0.0506 -0.1330 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1221 -0.0488 -0.1402 isotope_error_0 0.0448 0.1182 0.1348 isotope_error_1 0.0950 -0.0769 0.0134 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7036 -2.1049 -0.8764 log10_evalue 0.4480 0.6951 0.7157 hyperscore 1.3755 1.0721 0.5530 delta_hyperscore 0.0277 -0.3634 -0.4294 matched_ion_num -0.5261 -0.8128 -0.7755 complementary_ions -0.3329 0.0041 -0.0292 ion_series -0.3282 -0.3090 -0.4272 weighted_average_abs_fragment_ppm -0.0682 0.0834 -0.1456 length_7 0.0597 -0.0001 -0.0551 length_8 0.0009 -0.0458 0.0761 length_9_30 -0.0109 0.0153 0.0224 length_31 0.0000 0.0000 0.0000 ntt 0.0482 0.0045 -0.0108 nmc 0.0000 0.0000 0.0000 charge_1 0.0334 0.1052 0.0927 charge_2 -0.0683 -0.1016 -0.0144 charge_3 0.0275 0.0166 -0.0724 charge_4 0.0959 -0.0939 -0.1203 charge_5 -0.0343 0.0427 -0.0901 charge_6 0.0165 0.0911 0.0185 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1141 0.1550 0.1407 15.9949M 0.3350 0.2315 0.3243 pred_RT_real_units 1.7212 1.2901 1.7528 unweighted_spectral_entropy 0.1671 0.1172 0.1076 delta_RT_loess -0.4352 0.1543 -0.5654 m0 Found 11926 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33562 target PSMs and 2159 decoy PSMs. Calculating q values. Final list yields 12020 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.0890 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG2_edited.pin Started Mon Jul 29 23:25:31 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 43901 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 41173 positives and 2728 negatives, size ratio=15.0927 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8348 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8647 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8409 training set positives with q<0.01 in that direction. Found 12666 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7100 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13201 PSMs with q<0.01 Iteration 2: Estimated 13318 PSMs with q<0.01 Iteration 3: Estimated 13404 PSMs with q<0.01 Iteration 4: Estimated 13440 PSMs with q<0.01 Iteration 5: Estimated 13450 PSMs with q<0.01 Iteration 6: Estimated 13461 PSMs with q<0.01 Iteration 7: Estimated 13446 PSMs with q<0.01 Iteration 8: Estimated 13430 PSMs with q<0.01 Iteration 9: Estimated 13448 PSMs with q<0.01 Iteration 10: Estimated 13452 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1861 -0.1559 -0.1791 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0308 0.0457 -0.0976 isotope_error_0 -0.0448 0.0019 -0.0398 isotope_error_1 0.0887 -0.0575 0.1638 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.6317 -0.9462 -0.7952 log10_evalue 0.1359 -0.1642 0.5299 hyperscore 0.7419 1.2453 0.8202 delta_hyperscore 0.8836 0.8873 0.3735 matched_ion_num -0.8165 -0.5540 -0.6293 complementary_ions -0.3581 -0.5153 -0.4622 ion_series -0.0876 -0.1192 -0.1117 weighted_average_abs_fragment_ppm -0.0440 -0.0430 -0.0010 length_7 0.0369 0.1385 0.0720 length_8 0.0268 0.0871 0.1106 length_9_30 -0.0384 -0.2009 -0.2057 length_31 0.0000 0.0000 0.0000 ntt 0.1181 -0.2382 -0.1092 nmc 0.0000 0.0000 0.0000 charge_1 0.0463 -0.1747 -0.0646 charge_2 -0.0211 0.0308 0.0094 charge_3 -0.1249 0.1558 0.0755 charge_4 0.0659 0.1985 -0.0138 charge_5 0.0879 0.1682 0.1641 charge_6 0.0368 0.0631 0.0717 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0177 0.0806 0.0565 15.9949M 0.0367 0.0458 0.1570 pred_RT_real_units 1.5719 1.6891 1.6714 unweighted_spectral_entropy 0.0058 0.0470 0.0574 delta_RT_loess -0.8225 -0.7516 -0.8210 m0 Found 13038 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 41173 target PSMs and 2728 decoy PSMs. Calculating q values. Final list yields 13039 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.9880 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_1_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_1_edited.pin Started Mon Jul 29 23:25:39 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_N_1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39814 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37582 positives and 2232 negatives, size ratio=16.8378 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 9371 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 9155 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 9251 training set positives with q<0.01 in that direction. Found 13786 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5620 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 14283 PSMs with q<0.01 Iteration 2: Estimated 14432 PSMs with q<0.01 Iteration 3: Estimated 14563 PSMs with q<0.01 Iteration 4: Estimated 14652 PSMs with q<0.01 Iteration 5: Estimated 14695 PSMs with q<0.01 Iteration 6: Estimated 14728 PSMs with q<0.01 Iteration 7: Estimated 14740 PSMs with q<0.01 Iteration 8: Estimated 14777 PSMs with q<0.01 Iteration 9: Estimated 14782 PSMs with q<0.01 Iteration 10: Estimated 14785 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1334 -0.1143 -0.1255 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0762 -0.0319 -0.0353 isotope_error_0 0.0070 -0.0384 0.1033 isotope_error_1 0.0822 0.0816 -0.0758 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5222 -1.5189 -1.7510 log10_evalue -0.4302 -2.4200 -0.0529 hyperscore 0.8086 1.3801 0.6112 delta_hyperscore 0.3096 2.7248 1.0622 matched_ion_num -0.5845 -0.5739 -0.9677 complementary_ions -0.5993 -0.6338 -0.3704 ion_series -0.1559 -0.0081 -0.0029 weighted_average_abs_fragment_ppm -0.0275 -0.0773 0.0148 length_7 -0.0004 0.0028 0.0591 length_8 0.0430 -0.1091 0.1381 length_9_30 -0.0394 0.1512 -0.1946 length_31 0.0000 0.0000 0.0000 ntt 0.0129 -0.2072 -0.0062 nmc 0.0000 0.0000 0.0000 charge_1 0.1106 0.1613 -0.0195 charge_2 -0.0765 -0.0723 -0.0420 charge_3 -0.0837 -0.1831 0.0887 charge_4 -0.0149 -0.0763 0.1340 charge_5 0.0228 0.0100 -0.0155 charge_6 0.0018 -0.0047 -0.0010 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0712 0.1423 0.3559 15.9949M 0.3013 0.1300 0.1602 pred_RT_real_units 1.3737 1.4131 1.3862 unweighted_spectral_entropy -0.1616 -0.1155 0.0584 delta_RT_loess -0.2269 -0.1166 0.0807 m0 Found 13953 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37582 target PSMs and 2232 decoy PSMs. Calculating q values. Final list yields 14007 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 7.0340 cpu seconds or 7 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_4_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_N_4_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_N_4_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_N_4_edited.pin Started Mon Jul 29 23:25:47 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_N_4_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 35184 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33275 positives and 1909 negatives, size ratio=17.4306 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8347 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8769 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8649 training set positives with q<0.01 in that direction. Found 12814 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6340 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13451 PSMs with q<0.01 Iteration 2: Estimated 13629 PSMs with q<0.01 Iteration 3: Estimated 13772 PSMs with q<0.01 Iteration 4: Estimated 13810 PSMs with q<0.01 Iteration 5: Estimated 13822 PSMs with q<0.01 Iteration 6: Estimated 13879 PSMs with q<0.01 Iteration 7: Estimated 13894 PSMs with q<0.01 Iteration 8: Estimated 13886 PSMs with q<0.01 Iteration 9: Estimated 13909 PSMs with q<0.01 Iteration 10: Estimated 13895 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.4434 -0.2375 -0.2479 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0878 -0.0698 -0.0246 isotope_error_0 0.0771 0.0023 0.0038 isotope_error_1 0.0165 0.0813 0.0253 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.0562 -2.1879 -1.5025 log10_evalue -0.2297 0.2899 -0.3193 hyperscore 0.8057 0.7802 0.6568 delta_hyperscore 1.3864 -0.0878 0.7916 matched_ion_num -0.8485 -0.7325 -0.6336 complementary_ions -0.4561 -0.4279 -0.5601 ion_series 0.1297 -0.1240 -0.0928 weighted_average_abs_fragment_ppm -0.0186 -0.0656 -0.0542 length_7 0.0715 0.2049 0.0112 length_8 0.0898 0.1179 0.0755 length_9_30 -0.1399 -0.2309 -0.0742 length_31 0.0000 0.0000 0.0000 ntt 0.0484 0.0730 0.1206 nmc 0.0000 0.0000 0.0000 charge_1 0.0648 0.0265 -0.0056 charge_2 -0.0330 -0.0754 0.0063 charge_3 -0.0698 0.1386 -0.0334 charge_4 -0.0125 -0.0544 0.0615 charge_5 -0.0210 0.0115 0.0265 charge_6 0.0001 -0.0020 0.0023 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0805 0.1885 0.1668 15.9949M 0.4311 0.3773 0.1635 pred_RT_real_units 1.4131 1.4897 1.3174 unweighted_spectral_entropy 0.1808 0.2017 0.1099 delta_RT_loess -0.0115 0.2158 -0.2519 m0 Found 13534 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33275 target PSMs and 1909 decoy PSMs. Calculating q values. Final list yields 13537 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.1730 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS27_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS27_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS27_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS27_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS27_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS27_edited.pin Started Mon Jul 29 23:25:54 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS27_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36215 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33882 positives and 2333 negatives, size ratio=14.5229 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7242 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7238 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7189 training set positives with q<0.01 in that direction. Found 10831 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7050 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11363 PSMs with q<0.01 Iteration 2: Estimated 11399 PSMs with q<0.01 Iteration 3: Estimated 11466 PSMs with q<0.01 Iteration 4: Estimated 11551 PSMs with q<0.01 Iteration 5: Estimated 11576 PSMs with q<0.01 Iteration 6: Estimated 11609 PSMs with q<0.01 Iteration 7: Estimated 11649 PSMs with q<0.01 Iteration 8: Estimated 11641 PSMs with q<0.01 Iteration 9: Estimated 11690 PSMs with q<0.01 Iteration 10: Estimated 11701 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1200 -0.1653 -0.1554 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1156 -0.0225 -0.0645 isotope_error_0 -0.0857 -0.0483 -0.0095 isotope_error_1 0.2391 0.0829 0.0893 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.3614 -1.3353 -1.4551 log10_evalue -0.5204 -0.3916 -0.4664 hyperscore 0.3034 0.6511 0.6141 delta_hyperscore 0.3992 0.5255 1.5187 matched_ion_num -0.5179 -0.6759 -0.9134 complementary_ions -0.3359 -0.2973 -0.6040 ion_series 0.1085 0.0553 0.1493 weighted_average_abs_fragment_ppm 0.0396 0.0246 0.0481 length_7 0.1672 0.1262 0.0817 length_8 0.0535 0.0497 -0.0107 length_9_30 -0.2171 -0.1732 -0.0736 length_31 0.0000 0.0000 0.0000 ntt 0.1710 0.1600 0.2210 nmc 0.0000 0.0000 0.0000 charge_1 -0.0926 -0.0690 0.0321 charge_2 -0.0431 -0.0082 0.0371 charge_3 0.2244 0.1942 -0.0255 charge_4 0.1113 -0.0753 -0.1619 charge_5 -0.0440 0.0237 -0.0721 charge_6 0.0353 0.0157 0.0316 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0554 0.0537 0.2395 15.9949M 0.2985 0.2359 0.2722 pred_RT_real_units 1.9607 1.6723 1.8396 unweighted_spectral_entropy 0.0628 0.0331 -0.0080 delta_RT_loess -0.7405 -0.6533 -0.6796 m0 Found 11395 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33882 target PSMs and 2333 decoy PSMs. Calculating q values. Final list yields 11412 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.3240 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_12_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_12_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_12_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_12_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_12_edited.pin Started Mon Jul 29 23:26:00 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_12_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38924 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36757 positives and 2167 negatives, size ratio=16.9622 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8674 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8804 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8736 training set positives with q<0.01 in that direction. Found 13105 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6210 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13529 PSMs with q<0.01 Iteration 2: Estimated 13588 PSMs with q<0.01 Iteration 3: Estimated 13718 PSMs with q<0.01 Iteration 4: Estimated 13791 PSMs with q<0.01 Iteration 5: Estimated 13784 PSMs with q<0.01 Iteration 6: Estimated 13795 PSMs with q<0.01 Iteration 7: Estimated 13841 PSMs with q<0.01 Iteration 8: Estimated 13879 PSMs with q<0.01 Iteration 9: Estimated 13881 PSMs with q<0.01 Iteration 10: Estimated 13897 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0995 -0.0242 -0.1966 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1161 -0.1170 -0.1187 isotope_error_0 0.0121 0.0620 0.0936 isotope_error_1 0.1261 0.0696 0.0350 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5912 -1.7423 -2.1050 log10_evalue -1.1106 -0.1571 -2.0909 hyperscore 0.5016 0.5884 1.1078 delta_hyperscore 1.7117 0.5955 2.8147 matched_ion_num -0.7069 -0.7379 -0.9856 complementary_ions -0.5057 -0.6003 -0.8119 ion_series 0.0508 -0.0929 -0.0644 weighted_average_abs_fragment_ppm -0.0387 0.0056 0.0388 length_7 0.0796 0.0251 0.1311 length_8 -0.0114 0.1056 0.0600 length_9_30 -0.0175 -0.1428 -0.1641 length_31 0.0000 0.0000 0.0000 ntt -0.2339 0.0357 0.2359 nmc 0.0000 0.0000 0.0000 charge_1 -0.1428 0.0561 0.0816 charge_2 0.0775 -0.0584 -0.1272 charge_3 0.1801 0.0231 0.1282 charge_4 -0.1159 -0.0301 -0.0575 charge_5 0.1148 -0.0282 -0.0080 charge_6 0.0014 0.0093 0.0062 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1886 0.0357 0.0414 15.9949M -0.2023 0.1714 0.0054 pred_RT_real_units 1.5145 1.5666 1.5320 unweighted_spectral_entropy 0.0921 0.1974 0.0219 delta_RT_loess -0.2743 -0.2037 -0.0511 m0 Found 13305 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36757 target PSMs and 2167 decoy PSMs. Calculating q values. Final list yields 13305 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.2970 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG1_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG1_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG1_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG1_edited.pin Started Mon Jul 29 23:26:08 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_NEG1_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 33958 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 31866 positives and 2092 negatives, size ratio=15.2323 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6632 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6820 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6478 training set positives with q<0.01 in that direction. Found 9845 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5250 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10686 PSMs with q<0.01 Iteration 2: Estimated 11041 PSMs with q<0.01 Iteration 3: Estimated 11265 PSMs with q<0.01 Iteration 4: Estimated 11327 PSMs with q<0.01 Iteration 5: Estimated 11418 PSMs with q<0.01 Iteration 6: Estimated 11490 PSMs with q<0.01 Iteration 7: Estimated 11530 PSMs with q<0.01 Iteration 8: Estimated 11551 PSMs with q<0.01 Iteration 9: Estimated 11574 PSMs with q<0.01 Iteration 10: Estimated 11548 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1956 -0.1481 -0.2820 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0954 0.0575 -0.1541 isotope_error_0 0.0496 0.0143 0.0969 isotope_error_1 0.0578 -0.0858 0.0741 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7495 -0.5249 -0.7338 log10_evalue 0.2766 0.4303 -1.0152 hyperscore 0.9389 0.8654 0.8999 delta_hyperscore 0.4867 0.3652 1.4756 matched_ion_num -0.8705 -0.5967 -0.6654 complementary_ions -0.0019 -0.0839 -0.3670 ion_series 0.0765 -0.1284 -0.0702 weighted_average_abs_fragment_ppm -0.0043 -0.0279 0.0925 length_7 0.1418 0.0495 0.1420 length_8 0.0475 0.0500 0.0054 length_9_30 -0.1768 -0.0919 -0.1756 length_31 0.0000 0.0000 0.0000 ntt -0.0279 0.0400 -0.0652 nmc 0.0000 0.0000 0.0000 charge_1 -0.0046 -0.0739 -0.0000 charge_2 0.0078 0.0558 0.0396 charge_3 0.0071 0.0433 -0.0768 charge_4 0.0052 -0.0493 0.0233 charge_5 -0.0474 0.0692 -0.0359 charge_6 -0.0149 0.0137 -0.0264 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1857 0.0168 0.1538 15.9949M 0.5000 0.2052 0.5237 pred_RT_real_units 1.3792 1.2086 1.3729 unweighted_spectral_entropy 0.0521 0.1199 0.0655 delta_RT_loess -0.3242 -0.6701 -0.5903 m0 Found 11048 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 31866 target PSMs and 2092 decoy PSMs. Calculating q values. Final list yields 11061 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5440 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG3_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG3_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG3_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG3_edited.pin Started Mon Jul 29 23:26:14 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG3_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41269 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 38594 positives and 2675 negatives, size ratio=14.4277 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6765 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6681 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6977 training set positives with q<0.01 in that direction. Found 10200 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6190 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10625 PSMs with q<0.01 Iteration 2: Estimated 10754 PSMs with q<0.01 Iteration 3: Estimated 10876 PSMs with q<0.01 Iteration 4: Estimated 10923 PSMs with q<0.01 Iteration 5: Estimated 10940 PSMs with q<0.01 Iteration 6: Estimated 10958 PSMs with q<0.01 Iteration 7: Estimated 10994 PSMs with q<0.01 Iteration 8: Estimated 11017 PSMs with q<0.01 Iteration 9: Estimated 11026 PSMs with q<0.01 Iteration 10: Estimated 11062 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0532 -0.1336 -0.0752 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0277 -0.0018 -0.1062 isotope_error_0 0.0591 0.1765 0.0378 isotope_error_1 -0.0996 -0.1973 0.0832 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6539 -2.0743 -1.8666 log10_evalue -1.0911 -0.8435 -0.3527 hyperscore 0.5234 0.6086 0.3505 delta_hyperscore 1.0347 0.4920 0.3415 matched_ion_num -0.7218 -0.6888 -0.7394 complementary_ions -0.2787 -0.3182 -0.3291 ion_series -0.0300 -0.0310 0.1713 weighted_average_abs_fragment_ppm -0.0166 -0.0273 -0.0029 length_7 0.0881 0.0147 0.0356 length_8 0.0700 0.0226 0.1060 length_9_30 -0.1397 -0.0248 -0.1560 length_31 0.0000 0.0000 0.0000 ntt 0.2362 0.2901 0.1034 nmc 0.0000 0.0000 0.0000 charge_1 0.0301 0.1072 0.1173 charge_2 -0.0180 -0.0575 -0.0603 charge_3 0.0440 0.0705 0.0046 charge_4 -0.1417 -0.2797 -0.1882 charge_5 0.0213 -0.0395 -0.0510 charge_6 0.0544 0.0152 0.0186 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2104 0.2134 0.3293 15.9949M 0.3003 0.3258 0.4649 pred_RT_real_units 1.8944 1.9461 1.9339 unweighted_spectral_entropy 0.0405 0.1702 0.0840 delta_RT_loess -1.1707 -1.2513 -1.1119 m0 Found 10629 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 38594 target PSMs and 2675 decoy PSMs. Calculating q values. Final list yields 10638 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.4860 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS8_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS8_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS8_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS8_edited.pin Started Mon Jul 29 23:26:20 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS8_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39691 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37172 positives and 2519 negatives, size ratio=14.7566 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7438 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7303 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7522 training set positives with q<0.01 in that direction. Found 11043 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6640 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11721 PSMs with q<0.01 Iteration 2: Estimated 12011 PSMs with q<0.01 Iteration 3: Estimated 12142 PSMs with q<0.01 Iteration 4: Estimated 12193 PSMs with q<0.01 Iteration 5: Estimated 12180 PSMs with q<0.01 Iteration 6: Estimated 12210 PSMs with q<0.01 Iteration 7: Estimated 12209 PSMs with q<0.01 Iteration 8: Estimated 12249 PSMs with q<0.01 Iteration 9: Estimated 12272 PSMs with q<0.01 Iteration 10: Estimated 12292 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0614 -0.2316 -0.0968 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0270 -0.2103 -0.0271 isotope_error_0 0.0436 0.2097 0.1261 isotope_error_1 -0.0172 0.0115 -0.1101 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5792 -1.6705 -0.6596 log10_evalue -0.1265 0.4289 0.0151 hyperscore 0.6697 0.4070 0.6415 delta_hyperscore 0.5422 -0.0618 1.1243 matched_ion_num -0.7549 -0.6791 -0.7679 complementary_ions -0.0669 -0.1158 -0.2602 ion_series 0.1381 0.2498 0.0168 weighted_average_abs_fragment_ppm 0.0078 -0.0030 0.0223 length_7 0.1254 0.0699 -0.0142 length_8 0.1055 -0.0241 -0.0187 length_9_30 -0.2232 -0.0166 0.0226 length_31 0.0000 0.0000 0.0000 ntt 0.1133 0.1326 0.2363 nmc 0.0000 0.0000 0.0000 charge_1 0.0080 0.0014 0.0892 charge_2 0.0452 0.0178 0.0468 charge_3 -0.1396 -0.0460 -0.0843 charge_4 0.0760 0.0196 -0.2421 charge_5 -0.0301 -0.0281 -0.1162 charge_6 0.0178 0.0516 -0.0024 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2328 0.3636 0.4455 15.9949M 0.2531 0.2403 0.2508 pred_RT_real_units 1.3634 2.0675 1.7691 unweighted_spectral_entropy -0.0019 0.1377 0.0639 delta_RT_loess -0.6389 -0.8515 -0.7995 m0 Found 11651 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37172 target PSMs and 2519 decoy PSMs. Calculating q values. Final list yields 11651 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.6390 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_2_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_2_edited.pin Started Mon Jul 29 23:26:27 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39444 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37076 positives and 2368 negatives, size ratio=15.6571 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7433 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7712 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7455 training set positives with q<0.01 in that direction. Found 11304 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5920 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11745 PSMs with q<0.01 Iteration 2: Estimated 11851 PSMs with q<0.01 Iteration 3: Estimated 11999 PSMs with q<0.01 Iteration 4: Estimated 12073 PSMs with q<0.01 Iteration 5: Estimated 12099 PSMs with q<0.01 Iteration 6: Estimated 12175 PSMs with q<0.01 Iteration 7: Estimated 12223 PSMs with q<0.01 Iteration 8: Estimated 12219 PSMs with q<0.01 Iteration 9: Estimated 12289 PSMs with q<0.01 Iteration 10: Estimated 12306 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.7741 -0.5094 -0.1641 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0361 0.0103 0.0263 isotope_error_0 0.0388 0.0913 0.0249 isotope_error_1 -0.0013 -0.1146 -0.0588 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.6368 -1.3710 -1.7225 log10_evalue 1.7914 0.2531 0.5690 hyperscore 0.8118 0.7717 1.1117 delta_hyperscore -0.7525 1.5377 0.5208 matched_ion_num -0.5012 -0.9493 -0.7921 complementary_ions 0.3856 -0.5267 -0.7430 ion_series 0.3168 0.1762 -0.0709 weighted_average_abs_fragment_ppm -0.0708 -0.0470 0.0184 length_7 0.0952 0.0971 0.1059 length_8 0.0722 0.0864 0.0101 length_9_30 -0.1015 -0.1243 -0.0620 length_31 0.0000 0.0000 0.0000 ntt -0.0612 0.0994 -0.2269 nmc 0.0000 0.0000 0.0000 charge_1 0.0367 0.0312 -0.1281 charge_2 0.0585 0.0844 -0.0591 charge_3 -0.2277 -0.2318 0.2492 charge_4 0.0030 -0.0830 0.1915 charge_5 0.1120 0.1442 0.1681 charge_6 0.0522 0.0058 0.0628 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0231 0.1083 0.0130 15.9949M 0.6037 0.2152 0.1085 pred_RT_real_units 1.4105 1.8859 1.3891 unweighted_spectral_entropy 0.2554 0.4077 -0.0931 delta_RT_loess -0.0186 -0.4319 -0.2308 m0 Found 11774 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37076 target PSMs and 2368 decoy PSMs. Calculating q values. Final list yields 11778 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.2670 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS19_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS19_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS19_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS19_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS19_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS19_edited.pin Started Mon Jul 29 23:26:33 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS19_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38058 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35797 positives and 2261 negatives, size ratio=15.8324 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7335 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7462 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7763 training set positives with q<0.01 in that direction. Found 11304 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7680 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11804 PSMs with q<0.01 Iteration 2: Estimated 11935 PSMs with q<0.01 Iteration 3: Estimated 12003 PSMs with q<0.01 Iteration 4: Estimated 12144 PSMs with q<0.01 Iteration 5: Estimated 12247 PSMs with q<0.01 Iteration 6: Estimated 12359 PSMs with q<0.01 Iteration 7: Estimated 12450 PSMs with q<0.01 Iteration 8: Estimated 12506 PSMs with q<0.01 Iteration 9: Estimated 12540 PSMs with q<0.01 Iteration 10: Estimated 12637 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2268 -0.2530 -0.1520 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0730 0.0387 0.0215 isotope_error_0 0.0427 0.0493 0.0712 isotope_error_1 -0.1371 -0.1034 -0.1079 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5573 -2.2548 -1.0619 log10_evalue -0.8595 -2.0321 -0.7907 hyperscore 0.7928 0.6994 1.1465 delta_hyperscore 0.1142 0.8431 0.9874 matched_ion_num -0.4031 -0.4547 -0.5953 complementary_ions -0.2160 -0.1912 -0.6895 ion_series -0.1475 -0.0092 -0.1920 weighted_average_abs_fragment_ppm -0.0216 -0.0294 0.0073 length_7 0.0404 0.0913 0.0461 length_8 0.0450 0.1134 -0.0411 length_9_30 -0.0762 -0.1974 0.0156 length_31 0.0000 0.0000 0.0000 ntt -0.0356 -0.1294 -0.0472 nmc 0.0000 0.0000 0.0000 charge_1 -0.0442 -0.1353 0.0339 charge_2 -0.0122 0.0209 0.0135 charge_3 -0.0140 0.0871 -0.0200 charge_4 0.1509 0.2230 -0.1702 charge_5 0.1254 0.0946 0.0473 charge_6 0.0691 0.0112 -0.0044 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.1165 -0.1254 -0.1052 15.9949M 0.5165 0.5768 0.5711 pred_RT_real_units 1.3203 1.4493 1.5452 unweighted_spectral_entropy -0.1278 -0.0953 -0.1571 delta_RT_loess -0.7425 -0.6315 -0.7657 m0 Found 12286 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35797 target PSMs and 2261 decoy PSMs. Calculating q values. Final list yields 12317 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.7950 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_10_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_10_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_10_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_10_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_10_edited.pin Started Mon Jul 29 23:26:40 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_10_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 33595 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 31735 positives and 1860 negatives, size ratio=17.0618 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 7173 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7384 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7518 training set positives with q<0.01 in that direction. Found 10714 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6440 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11489 PSMs with q<0.01 Iteration 2: Estimated 11626 PSMs with q<0.01 Iteration 3: Estimated 11764 PSMs with q<0.01 Iteration 4: Estimated 11784 PSMs with q<0.01 Iteration 5: Estimated 11839 PSMs with q<0.01 Iteration 6: Estimated 11858 PSMs with q<0.01 Iteration 7: Estimated 11883 PSMs with q<0.01 Iteration 8: Estimated 11910 PSMs with q<0.01 Iteration 9: Estimated 11923 PSMs with q<0.01 Iteration 10: Estimated 11933 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2078 -0.2792 -0.1729 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0070 -0.0149 -0.1018 isotope_error_0 0.0519 -0.0186 -0.0161 isotope_error_1 -0.0679 0.0391 0.1399 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.9294 -1.7424 -0.8404 log10_evalue -0.0556 0.4978 -0.2418 hyperscore 1.1923 0.7732 0.7746 delta_hyperscore 0.5744 0.4352 1.1678 matched_ion_num -0.7288 -0.8806 -0.7163 complementary_ions -0.5958 -0.3822 -0.5186 ion_series 0.1242 0.1120 -0.0118 weighted_average_abs_fragment_ppm -0.0049 0.0197 0.0026 length_7 0.0704 0.0518 0.1339 length_8 -0.0803 -0.0804 -0.0368 length_9_30 0.0567 0.0600 -0.0235 length_31 0.0000 0.0000 0.0000 ntt -0.1051 -0.2412 -0.0122 nmc 0.0000 0.0000 0.0000 charge_1 0.0275 -0.1086 -0.0433 charge_2 -0.0101 0.1186 0.0736 charge_3 -0.0438 -0.0456 -0.0594 charge_4 -0.0155 0.0334 -0.0259 charge_5 0.0456 0.0462 0.0284 charge_6 0.0448 0.0359 0.0114 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.0902 0.0186 -0.0677 15.9949M -0.1878 -0.0530 0.1887 pred_RT_real_units 1.1271 1.2264 1.2184 unweighted_spectral_entropy -0.2426 -0.1752 -0.0697 delta_RT_loess 0.0651 0.1407 -0.2011 m0 Found 11527 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 31735 target PSMs and 1860 decoy PSMs. Calculating q values. Final list yields 11544 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.2430 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG2_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210070_APCA_NEG2_percolator_target_psms.tsv --decoy-results-psms 20210070_APCA_NEG2_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210070_APCA_NEG2_edited.pin Started Mon Jul 29 23:26:47 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210070_APCA_NEG2_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 32425 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 30484 positives and 1941 negatives, size ratio=15.7053 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6837 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7080 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6928 training set positives with q<0.01 in that direction. Found 10416 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4800 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10861 PSMs with q<0.01 Iteration 2: Estimated 10944 PSMs with q<0.01 Iteration 3: Estimated 11001 PSMs with q<0.01 Iteration 4: Estimated 11031 PSMs with q<0.01 Iteration 5: Estimated 11053 PSMs with q<0.01 Iteration 6: Estimated 11063 PSMs with q<0.01 Iteration 7: Estimated 11078 PSMs with q<0.01 Iteration 8: Estimated 11089 PSMs with q<0.01 Iteration 9: Estimated 11068 PSMs with q<0.01 Iteration 10: Estimated 11076 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.4645 -0.2560 -0.2429 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0792 -0.0441 -0.0206 isotope_error_0 0.0168 0.0568 0.0300 isotope_error_1 0.0782 -0.0126 -0.0100 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5942 -1.0354 -1.5332 log10_evalue 0.9276 -0.0060 -0.4156 hyperscore 0.1381 0.8991 0.3908 delta_hyperscore -0.5634 0.5112 0.9248 matched_ion_num -0.5879 -0.5543 -0.6155 complementary_ions -0.2134 -0.1100 -0.4110 ion_series -0.0865 -0.1180 0.1070 weighted_average_abs_fragment_ppm -0.0603 -0.0756 0.0134 length_7 0.0461 0.0132 0.1276 length_8 -0.0145 -0.0084 0.0873 length_9_30 0.0181 0.0469 -0.2378 length_31 0.0000 0.0000 0.0000 ntt -0.0654 0.1132 0.3326 nmc 0.0000 0.0000 0.0000 charge_1 -0.0261 0.0084 -0.0515 charge_2 -0.0050 0.0071 -0.0084 charge_3 0.0444 0.0048 0.0480 charge_4 0.0189 -0.0532 0.1130 charge_5 0.0133 -0.0335 0.0224 charge_6 0.0695 0.0387 0.0761 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2024 0.2565 0.2689 15.9949M 0.1459 -0.0284 0.2987 pred_RT_real_units 1.2765 1.3197 1.7666 unweighted_spectral_entropy -0.1347 -0.2006 0.0032 delta_RT_loess -0.5360 -0.3571 -0.6390 m0 Found 10598 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 30484 target PSMs and 1941 decoy PSMs. Calculating q values. Final list yields 10610 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.0080 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC5_percolator_target_psms.tsv --decoy-results-psms 20210155_HC5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC5_percolator_target_psms.tsv --decoy-results-psms 20210155_HC5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC5_edited.pin Started Mon Jul 29 23:26:53 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 40926 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 37988 positives and 2938 negatives, size ratio=12.9299 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 5458 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 5478 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 5593 training set positives with q<0.01 in that direction. Found 8079 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6910 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 8710 PSMs with q<0.01 Iteration 2: Estimated 8790 PSMs with q<0.01 Iteration 3: Estimated 8838 PSMs with q<0.01 Iteration 4: Estimated 8880 PSMs with q<0.01 Iteration 5: Estimated 8906 PSMs with q<0.01 Iteration 6: Estimated 8920 PSMs with q<0.01 Iteration 7: Estimated 8935 PSMs with q<0.01 Iteration 8: Estimated 8925 PSMs with q<0.01 Iteration 9: Estimated 8920 PSMs with q<0.01 Iteration 10: Estimated 8911 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.0498 -0.5772 -0.1138 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0991 -0.0201 0.0544 isotope_error_0 0.0658 0.0052 -0.0220 isotope_error_1 -0.1918 0.0181 -0.0399 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -0.7032 -0.1735 -1.0384 log10_evalue -1.9823 -0.9945 -0.3968 hyperscore 1.7383 1.4793 0.9710 delta_hyperscore 3.0714 2.1766 0.9839 matched_ion_num -0.7169 -0.6726 -0.7823 complementary_ions -0.4079 -0.0886 -0.2167 ion_series -0.0385 -0.2187 -0.1027 weighted_average_abs_fragment_ppm 0.0238 -0.0986 -0.0412 length_7 0.0447 0.0539 0.1280 length_8 -0.0810 -0.0120 0.0464 length_9_30 0.0592 0.0262 -0.1264 length_31 0.0000 0.0000 0.0000 ntt 0.0316 0.0765 -0.1898 nmc 0.0000 0.0000 0.0000 charge_1 -0.1426 -0.0628 -0.2499 charge_2 0.1549 -0.1063 -0.0215 charge_3 -0.1787 0.1844 0.2150 charge_4 0.2267 0.2867 0.3759 charge_5 -0.0217 -0.1365 0.1429 charge_6 0.1768 0.1274 0.1318 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2638 -0.0379 -0.1243 15.9949M -0.4686 -0.0853 -0.1657 pred_RT_real_units 2.0730 1.5400 1.6835 unweighted_spectral_entropy 0.0679 -0.0124 0.1894 delta_RT_loess -2.0384 -1.7067 -1.5869 m0 Found 8454 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 37988 target PSMs and 2938 decoy PSMs. Calculating q values. Final list yields 8473 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.8140 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG7_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_NEG7_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_NEG7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_NEG7_edited.pin Started Mon Jul 29 23:26:59 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_NEG7_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39237 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36761 positives and 2476 negatives, size ratio=14.8469 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7133 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7338 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7233 training set positives with q<0.01 in that direction. Found 10728 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7070 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11276 PSMs with q<0.01 Iteration 2: Estimated 11343 PSMs with q<0.01 Iteration 3: Estimated 11370 PSMs with q<0.01 Iteration 4: Estimated 11377 PSMs with q<0.01 Iteration 5: Estimated 11388 PSMs with q<0.01 Iteration 6: Estimated 11395 PSMs with q<0.01 Iteration 7: Estimated 11402 PSMs with q<0.01 Iteration 8: Estimated 11412 PSMs with q<0.01 Iteration 9: Estimated 11404 PSMs with q<0.01 Iteration 10: Estimated 11404 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1897 -0.1944 -0.2949 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0084 0.0040 0.0935 isotope_error_0 0.0121 0.0388 -0.0766 isotope_error_1 -0.0037 -0.0487 -0.0247 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2601 -1.6552 -0.6043 log10_evalue 1.1596 -0.8246 0.6571 hyperscore 1.2670 0.4445 0.8067 delta_hyperscore -1.1546 0.7832 0.6401 matched_ion_num -0.2612 -0.6879 -0.6757 complementary_ions 0.0249 -0.2031 -0.1516 ion_series -0.1528 0.0860 0.1399 weighted_average_abs_fragment_ppm -0.0941 -0.0823 -0.1246 length_7 0.0355 -0.0476 -0.0054 length_8 -0.0432 -0.0147 -0.0867 length_9_30 0.0777 0.0925 0.1756 length_31 0.0000 0.0000 0.0000 ntt -0.1233 0.1114 -0.1265 nmc 0.0000 0.0000 0.0000 charge_1 -0.1990 -0.0481 -0.1397 charge_2 0.1674 0.0159 0.1499 charge_3 0.0160 0.1657 0.0402 charge_4 0.0817 -0.1389 -0.0750 charge_5 0.0099 -0.0645 -0.0289 charge_6 0.0023 0.0287 -0.0177 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2134 0.2972 0.1482 15.9949M -0.0590 -0.0739 0.0089 pred_RT_real_units 1.6264 1.9985 1.5548 unweighted_spectral_entropy 0.0292 0.0273 0.1873 delta_RT_loess -0.7247 -1.0508 -1.1039 m0 Found 10935 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36761 target PSMs and 2476 decoy PSMs. Calculating q values. Final list yields 10935 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.5440 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC8_percolator_target_psms.tsv --decoy-results-psms 20210155_HC8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC8_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC8_percolator_target_psms.tsv --decoy-results-psms 20210155_HC8_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC8_edited.pin Started Mon Jul 29 23:27:06 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC8_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36076 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 33688 positives and 2388 negatives, size ratio=14.1072 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 6562 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6553 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 6585 training set positives with q<0.01 in that direction. Found 9808 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5870 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10285 PSMs with q<0.01 Iteration 2: Estimated 10391 PSMs with q<0.01 Iteration 3: Estimated 10437 PSMs with q<0.01 Iteration 4: Estimated 10425 PSMs with q<0.01 Iteration 5: Estimated 10445 PSMs with q<0.01 Iteration 6: Estimated 10421 PSMs with q<0.01 Iteration 7: Estimated 10436 PSMs with q<0.01 Iteration 8: Estimated 10449 PSMs with q<0.01 Iteration 9: Estimated 10467 PSMs with q<0.01 Iteration 10: Estimated 10465 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.2055 -0.3506 -0.1181 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0365 -0.1057 -0.0302 isotope_error_0 0.0548 0.0430 0.0867 isotope_error_1 -0.0189 0.0782 -0.0630 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2106 -1.2883 -1.8273 log10_evalue 0.3006 0.3228 1.0680 hyperscore 0.4428 0.5178 0.6713 delta_hyperscore -0.3499 -0.3033 -0.6832 matched_ion_num -0.5664 -0.3746 -0.7794 complementary_ions 0.0584 0.0676 -0.5333 ion_series 0.2284 0.1251 -0.0712 weighted_average_abs_fragment_ppm -0.0732 -0.0609 0.0457 length_7 -0.0214 0.0483 0.1627 length_8 0.0308 0.0941 0.1737 length_9_30 0.0124 -0.1248 -0.3619 length_31 0.0000 0.0000 0.0000 ntt 0.1156 0.2183 0.1326 nmc 0.0000 0.0000 0.0000 charge_1 -0.0761 -0.1083 -0.0336 charge_2 0.0305 0.1333 -0.0674 charge_3 0.0860 -0.1155 0.0335 charge_4 -0.0368 0.0673 0.2468 charge_5 0.0617 0.0460 0.0735 charge_6 0.0804 0.1524 0.1040 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0706 0.1317 0.4043 15.9949M -0.0613 0.0974 0.1922 pred_RT_real_units 1.8600 1.9738 2.1330 unweighted_spectral_entropy 0.0062 0.2144 0.1784 delta_RT_loess -1.1306 -1.1004 -1.0667 m0 Found 10141 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 33688 target PSMs and 2388 decoy PSMs. Calculating q values. Final list yields 10161 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.0180 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_8_20210401021911_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_8_20210401021911_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_8_20210401021911_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_HC_8_20210401021911_percolator_target_psms.tsv --decoy-results-psms 20210105_HC_8_20210401021911_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_HC_8_20210401021911_edited.pin Started Mon Jul 29 23:27:12 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_HC_8_20210401021911_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 27270 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 25839 positives and 1431 negatives, size ratio=18.0566 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7191 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7304 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7070 training set positives with q<0.01 in that direction. Found 10861 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.4970 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11073 PSMs with q<0.01 Iteration 2: Estimated 11170 PSMs with q<0.01 Iteration 3: Estimated 11321 PSMs with q<0.01 Iteration 4: Estimated 11349 PSMs with q<0.01 Iteration 5: Estimated 11307 PSMs with q<0.01 Iteration 6: Estimated 11352 PSMs with q<0.01 Iteration 7: Estimated 11411 PSMs with q<0.01 Iteration 8: Estimated 11427 PSMs with q<0.01 Iteration 9: Estimated 11438 PSMs with q<0.01 Iteration 10: Estimated 11437 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1661 -0.0661 -0.2297 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0165 -0.0877 -0.0955 isotope_error_0 -0.0118 0.0517 -0.0091 isotope_error_1 -0.0064 0.0470 0.1270 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more 0.5553 -0.0553 -1.6987 log10_evalue -0.9220 -0.4773 -0.2902 hyperscore 1.1702 0.7868 0.8618 delta_hyperscore 1.8417 1.3661 0.8355 matched_ion_num -0.4361 -0.4207 -0.5962 complementary_ions -0.1983 -0.5266 -0.6809 ion_series -0.1375 -0.0149 -0.0650 weighted_average_abs_fragment_ppm -0.0333 0.0304 0.0193 length_7 0.0156 0.1490 0.0430 length_8 0.0176 0.0563 0.1105 length_9_30 -0.0185 -0.1370 -0.1460 length_31 0.0000 0.0000 0.0000 ntt 0.1868 0.2790 0.0109 nmc 0.0000 0.0000 0.0000 charge_1 -0.0540 0.0836 0.0320 charge_2 0.0106 -0.0147 -0.0188 charge_3 0.0770 -0.1270 -0.0172 charge_4 -0.0473 -0.0667 0.0016 charge_5 0.2037 -0.0044 -0.0681 charge_6 0.0021 0.0016 -0.0010 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0697 -0.0735 0.2168 15.9949M 0.0678 0.4539 0.3925 pred_RT_real_units 1.5180 1.4821 1.5825 unweighted_spectral_entropy 0.0431 -0.0744 0.2485 delta_RT_loess -0.2442 -0.1901 0.1124 m0 Found 10713 test set PSMs with q<0.01. Less identifications (10713 vs 10861) after percolator processing than before processing Resetting score vector, using default vector. Use --override flag to prevent this. Split 1: Selected feature 34 as initial direction. Could separate 7191 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7304 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7070 training set positives with q<0.01 in that direction. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 25839 target PSMs and 1431 decoy PSMs. Calculating q values. Final list yields 10862 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.1990 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC3_20210513174150_percolator_target_psms.tsv --decoy-results-psms 20210155_HC3_20210513174150_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC3_20210513174150_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_HC3_20210513174150_percolator_target_psms.tsv --decoy-results-psms 20210155_HC3_20210513174150_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_HC3_20210513174150_edited.pin Started Mon Jul 29 23:27:18 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_HC3_20210513174150_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 38044 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 35341 positives and 2703 negatives, size ratio=13.0747 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 5813 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 5813 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 5914 training set positives with q<0.01 in that direction. Found 8740 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.5400 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 9098 PSMs with q<0.01 Iteration 2: Estimated 9224 PSMs with q<0.01 Iteration 3: Estimated 9303 PSMs with q<0.01 Iteration 4: Estimated 9343 PSMs with q<0.01 Iteration 5: Estimated 9353 PSMs with q<0.01 Iteration 6: Estimated 9367 PSMs with q<0.01 Iteration 7: Estimated 9407 PSMs with q<0.01 Iteration 8: Estimated 9411 PSMs with q<0.01 Iteration 9: Estimated 9405 PSMs with q<0.01 Iteration 10: Estimated 9419 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.3115 -0.2801 -0.1502 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1027 0.0486 -0.0105 isotope_error_0 0.0724 0.0633 -0.0075 isotope_error_1 0.0404 -0.1289 0.0210 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2222 -1.1883 -0.7505 log10_evalue 1.2972 -0.1380 -0.9166 hyperscore 0.5370 0.9116 1.0967 delta_hyperscore -0.9729 -0.3423 0.8328 matched_ion_num -0.5178 -0.5371 -0.4589 complementary_ions -0.6498 -0.1915 -0.4555 ion_series -0.1310 -0.0800 -0.1347 weighted_average_abs_fragment_ppm -0.0734 -0.0237 -0.0471 length_7 0.0469 0.0997 0.0906 length_8 -0.1476 0.0406 0.0315 length_9_30 0.1879 -0.1077 -0.0789 length_31 0.0000 0.0000 0.0000 ntt 0.0965 0.2639 0.0755 nmc 0.0000 0.0000 0.0000 charge_1 0.0376 0.0320 -0.0105 charge_2 0.0998 -0.0266 0.0083 charge_3 -0.0764 0.0043 -0.0095 charge_4 -0.1490 0.0954 0.1306 charge_5 -0.2327 -0.1437 -0.1407 charge_6 0.0065 -0.0882 -0.0559 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0884 0.0183 0.0365 15.9949M 0.0229 0.3623 0.1043 pred_RT_real_units 2.1267 1.8835 1.9908 unweighted_spectral_entropy 0.0232 0.2266 0.1514 delta_RT_loess -1.6869 -1.4310 -1.6111 m0 Found 8939 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 35341 target PSMs and 2703 decoy PSMs. Calculating q values. Final list yields 8952 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 4.7180 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS9_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS9_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS9_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS9_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS9_edited.pin Started Mon Jul 29 23:27:23 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS9_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39269 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36836 positives and 2433 negatives, size ratio=15.1402 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7227 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 6930 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7113 training set positives with q<0.01 in that direction. Found 10646 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6610 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 10978 PSMs with q<0.01 Iteration 2: Estimated 11047 PSMs with q<0.01 Iteration 3: Estimated 11068 PSMs with q<0.01 Iteration 4: Estimated 11097 PSMs with q<0.01 Iteration 5: Estimated 11127 PSMs with q<0.01 Iteration 6: Estimated 11166 PSMs with q<0.01 Iteration 7: Estimated 11180 PSMs with q<0.01 Iteration 8: Estimated 11176 PSMs with q<0.01 Iteration 9: Estimated 11190 PSMs with q<0.01 Iteration 10: Estimated 11193 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1892 -0.2738 -0.3364 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0722 -0.0898 -0.1442 isotope_error_0 0.0521 -0.0113 -0.0308 isotope_error_1 0.0251 0.1155 0.1994 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.9931 -0.7460 -0.8781 log10_evalue -0.9723 -0.5604 -2.5795 hyperscore 0.9100 0.9902 0.9642 delta_hyperscore 1.6938 1.8549 3.2662 matched_ion_num -1.1229 -0.9126 -0.9555 complementary_ions -0.9201 -0.6824 -0.6072 ion_series -0.1812 0.0981 0.1447 weighted_average_abs_fragment_ppm 0.1513 0.0183 -0.0087 length_7 0.0988 0.0437 0.0703 length_8 0.0940 0.1428 0.0725 length_9_30 -0.2043 -0.1870 -0.1115 length_31 0.0000 0.0000 0.0000 ntt -0.0134 0.3412 0.0607 nmc 0.0000 0.0000 0.0000 charge_1 0.0089 0.0945 0.0505 charge_2 -0.0929 -0.1812 -0.1188 charge_3 0.1599 0.0185 0.1388 charge_4 0.0075 0.1865 -0.0829 charge_5 -0.0780 -0.0013 0.0823 charge_6 0.1677 0.1725 0.1620 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0129 -0.1416 -0.2260 15.9949M 0.2599 0.1184 -0.1520 pred_RT_real_units 2.0294 1.7993 1.7317 unweighted_spectral_entropy 0.1066 -0.1037 -0.1551 delta_RT_loess -0.7758 -1.0098 -1.1704 m0 Found 10912 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36836 target PSMs and 2433 decoy PSMs. Calculating q values. Final list yields 10942 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.0910 cpu seconds or 5 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_7_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_7_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210105_ACPA_P_7_percolator_target_psms.tsv --decoy-results-psms 20210105_ACPA_P_7_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210105_ACPA_P_7_edited.pin Started Mon Jul 29 23:27:29 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210105_ACPA_P_7_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 36624 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 34638 positives and 1986 negatives, size ratio=17.4411 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 8683 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 8775 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 8808 training set positives with q<0.01 in that direction. Found 13027 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.6210 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 13463 PSMs with q<0.01 Iteration 2: Estimated 13543 PSMs with q<0.01 Iteration 3: Estimated 13619 PSMs with q<0.01 Iteration 4: Estimated 13677 PSMs with q<0.01 Iteration 5: Estimated 13752 PSMs with q<0.01 Iteration 6: Estimated 13793 PSMs with q<0.01 Iteration 7: Estimated 13796 PSMs with q<0.01 Iteration 8: Estimated 13813 PSMs with q<0.01 Iteration 9: Estimated 13788 PSMs with q<0.01 Iteration 10: Estimated 13779 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank 0.0418 -0.4804 -0.1813 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0026 -0.0331 -0.0413 isotope_error_0 0.0990 0.0337 0.1203 isotope_error_1 -0.1103 0.0009 -0.0884 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -2.2733 -1.0197 -0.8833 log10_evalue -0.3603 -0.6218 -0.3211 hyperscore 0.8664 0.5560 0.3406 delta_hyperscore 0.4959 0.2218 1.0275 matched_ion_num -0.6295 -0.4227 -0.9352 complementary_ions -0.4429 0.3877 -0.2500 ion_series -0.2605 -0.1846 -0.1174 weighted_average_abs_fragment_ppm -0.0235 -0.0293 -0.0086 length_7 0.0542 -0.0611 -0.0055 length_8 -0.1101 0.0870 0.0372 length_9_30 0.1072 -0.0563 -0.0372 length_31 0.0000 0.0000 0.0000 ntt 0.2047 -0.1515 -0.0152 nmc 0.0000 0.0000 0.0000 charge_1 -0.0241 -0.1151 -0.0422 charge_2 0.0519 0.0563 -0.0151 charge_3 -0.0410 0.0894 0.0367 charge_4 -0.0510 0.0864 0.1600 charge_5 0.0231 0.0116 0.0706 charge_6 -0.0001 0.0021 0.0026 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.1373 0.2344 0.0434 15.9949M 0.0464 0.3355 0.1016 pred_RT_real_units 1.6023 1.3611 1.4237 unweighted_spectral_entropy -0.1847 0.0332 -0.0539 delta_RT_loess 0.0138 -0.2830 -0.3561 m0 Found 13485 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 34638 target PSMs and 1986 decoy PSMs. Calculating q values. Final list yields 13491 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.1340 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS5_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS5_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS5_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS5_edited.pin Started Mon Jul 29 23:27:36 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS5_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 39388 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 36945 positives and 2443 negatives, size ratio=15.1228 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7654 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7646 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7621 training set positives with q<0.01 in that direction. Found 11475 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7920 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 12019 PSMs with q<0.01 Iteration 2: Estimated 12131 PSMs with q<0.01 Iteration 3: Estimated 12164 PSMs with q<0.01 Iteration 4: Estimated 12202 PSMs with q<0.01 Iteration 5: Estimated 12259 PSMs with q<0.01 Iteration 6: Estimated 12291 PSMs with q<0.01 Iteration 7: Estimated 12330 PSMs with q<0.01 Iteration 8: Estimated 12349 PSMs with q<0.01 Iteration 9: Estimated 12345 PSMs with q<0.01 Iteration 10: Estimated 12357 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.1808 -0.1306 -0.1635 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.0112 0.0252 -0.0662 isotope_error_0 0.0238 -0.0118 -0.0867 isotope_error_1 -0.0137 -0.0167 0.1786 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1472 -1.0759 -1.3179 log10_evalue 1.0915 -0.2692 -0.2094 hyperscore 0.3494 0.8345 0.7416 delta_hyperscore -0.9055 0.1138 0.5633 matched_ion_num -0.3230 -0.5765 -0.8152 complementary_ions -0.2038 -0.0569 -0.0839 ion_series -0.1097 -0.1226 -0.0985 weighted_average_abs_fragment_ppm -0.0705 0.0283 0.0345 length_7 -0.0097 -0.0566 0.0849 length_8 0.0288 0.0202 0.1281 length_9_30 0.0069 -0.0004 -0.2417 length_31 0.0000 0.0000 0.0000 ntt 0.2029 0.1902 0.3318 nmc 0.0000 0.0000 0.0000 charge_1 -0.0049 0.0621 0.0177 charge_2 0.0606 0.0451 0.0871 charge_3 -0.0928 -0.1566 -0.2412 charge_4 -0.0332 -0.0717 0.0073 charge_5 -0.0213 -0.0457 0.0818 charge_6 0.0970 0.0137 0.0531 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0041 0.0931 0.0760 15.9949M 0.1217 0.3325 0.4368 pred_RT_real_units 1.4930 1.5069 1.6200 unweighted_spectral_entropy 0.2367 -0.0303 0.0058 delta_RT_loess -0.9412 -0.6950 -0.6372 m0 Found 11947 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 36945 target PSMs and 2443 decoy PSMs. Calculating q values. Final list yields 11957 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 6.0080 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS11_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS11_edited.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 15 --results-psms 20210155_APCA_POS11_percolator_target_psms.tsv --decoy-results-psms 20210155_APCA_POS11_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20210155_APCA_POS11_edited.pin Started Mon Jul 29 23:27:44 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20210155_APCA_POS11_edited.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M pred_RT_real_units unweighted_spectral_entropy delta_RT_loess Found 41753 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 39038 positives and 2715 negatives, size ratio=14.3786 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 34 as initial direction. Could separate 7269 training set positives with q<0.01 in that direction. Split 2: Selected feature 34 as initial direction. Could separate 7250 training set positives with q<0.01 in that direction. Split 3: Selected feature 34 as initial direction. Could separate 7291 training set positives with q<0.01 in that direction. Found 10765 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.7050 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 11183 PSMs with q<0.01 Iteration 2: Estimated 11319 PSMs with q<0.01 Iteration 3: Estimated 11421 PSMs with q<0.01 Iteration 4: Estimated 11493 PSMs with q<0.01 Iteration 5: Estimated 11525 PSMs with q<0.01 Iteration 6: Estimated 11525 PSMs with q<0.01 Iteration 7: Estimated 11539 PSMs with q<0.01 Iteration 8: Estimated 11589 PSMs with q<0.01 Iteration 9: Estimated 11576 PSMs with q<0.01 Iteration 10: Estimated 11576 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.0336 -0.0902 -0.1397 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative -0.1170 -0.0732 -0.0863 isotope_error_0 0.1858 -0.0381 0.1278 isotope_error_1 -0.0723 0.1309 -0.0428 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.1181 -0.4926 -1.1514 log10_evalue -1.2337 0.2365 -0.3643 hyperscore 0.8628 0.5684 0.5016 delta_hyperscore 0.9568 0.6561 0.6651 matched_ion_num -0.1925 -0.4259 -0.4799 complementary_ions -0.2327 -0.1774 -0.4043 ion_series -0.1395 -0.2718 -0.4512 weighted_average_abs_fragment_ppm -0.0206 -0.0555 -0.0356 length_7 0.0816 0.0142 0.0268 length_8 0.0014 0.0019 0.0244 length_9_30 -0.0545 0.0180 -0.0334 length_31 0.0000 0.0000 0.0000 ntt -0.1382 0.1883 -0.2066 nmc 0.0000 0.0000 0.0000 charge_1 -0.0366 -0.0175 -0.0471 charge_2 0.0562 0.0974 0.0055 charge_3 -0.0119 -0.0393 0.1350 charge_4 0.0036 -0.1609 -0.1163 charge_5 -0.0962 -0.1406 0.0766 charge_6 -0.0086 -0.0033 -0.0004 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.2708 0.3566 0.0319 15.9949M 0.1443 0.1764 0.1200 pred_RT_real_units 1.8180 1.8261 1.4288 unweighted_spectral_entropy 0.1691 0.2895 0.0523 delta_RT_loess -1.1561 -1.0678 -1.0527 m0 Found 10946 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 39038 target PSMs and 2715 decoy PSMs. Calculating q values. Final list yields 10967 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.9630 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_9.pin 20210105_HC_9 20210105_HC_9_percolator_target_psms.tsv 20210105_HC_9_percolator_decoy_psms.tsv interact-20210105_HC_9 DDA 0.5 F:\PXD031498\20210105_HC_9.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC13\20210105_HC_9_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC13\20210105_HC_9_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_9.pin 20210105_ACPA_P_9 20210105_ACPA_P_9_percolator_target_psms.tsv 20210105_ACPA_P_9_percolator_decoy_psms.tsv interact-20210105_ACPA_P_9 DDA 0.5 F:\PXD031498\20210105_ACPA_P_9.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA24\20210105_ACPA_P_9_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA24\20210105_ACPA_P_9_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_3.pin 20210105_ACPA_P_3 20210105_ACPA_P_3_percolator_target_psms.tsv 20210105_ACPA_P_3_percolator_decoy_psms.tsv interact-20210105_ACPA_P_3 DDA 0.5 F:\PXD031498\20210105_ACPA_P_3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA18\20210105_ACPA_P_3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA18\20210105_ACPA_P_3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_1.pin 20210105_ACPA_P_1 20210105_ACPA_P_1_percolator_target_psms.tsv 20210105_ACPA_P_1_percolator_decoy_psms.tsv interact-20210105_ACPA_P_1 DDA 0.5 F:\PXD031498\20210105_ACPA_P_1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA12\20210105_ACPA_P_1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA12\20210105_ACPA_P_1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA55] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS4.pin 20210155_APCA_POS4 20210155_APCA_POS4_percolator_target_psms.tsv 20210155_APCA_POS4_percolator_decoy_psms.tsv interact-20210155_APCA_POS4 DDA 0.5 F:\PXD031498\20210155_APCA_POS4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA55\20210155_APCA_POS4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA55\20210155_APCA_POS4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_5.pin 20210105_ACPA_N_5 20210105_ACPA_N_5_percolator_target_psms.tsv 20210105_ACPA_N_5_percolator_decoy_psms.tsv interact-20210105_ACPA_N_5 DDA 0.5 F:\PXD031498\20210105_ACPA_N_5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA11\20210105_ACPA_N_5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA11\20210105_ACPA_N_5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG4.pin 20210155_APCA_NEG4 20210155_APCA_NEG4_percolator_target_psms.tsv 20210155_APCA_NEG4_percolator_decoy_psms.tsv interact-20210155_APCA_NEG4 DDA 0.5 F:\PXD031498\20210155_APCA_NEG4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA28\20210155_APCA_NEG4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA28\20210155_APCA_NEG4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC10.pin 20210155_HC10 20210155_HC10_percolator_target_psms.tsv 20210155_HC10_percolator_decoy_psms.tsv interact-20210155_HC10 DDA 0.5 F:\PXD031498\20210155_HC10.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC14\20210155_HC10_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC14\20210155_HC10_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC16.pin 20210155_HC16 20210155_HC16_percolator_target_psms.tsv 20210155_HC16_percolator_decoy_psms.tsv interact-20210155_HC16 DDA 0.5 F:\PXD031498\20210155_HC16.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC20\20210155_HC16_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC20\20210155_HC16_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC3.pin 20210070_HC3 20210070_HC3_percolator_target_psms.tsv 20210070_HC3_percolator_decoy_psms.tsv interact-20210070_HC3 DDA 0.5 F:\PXD031498\20210070_HC3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC3\20210070_HC3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC3\20210070_HC3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA14] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_11.pin 20210105_ACPA_P_11 20210105_ACPA_P_11_percolator_target_psms.tsv 20210105_ACPA_P_11_percolator_decoy_psms.tsv interact-20210105_ACPA_P_11 DDA 0.5 F:\PXD031498\20210105_ACPA_P_11.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA14\20210105_ACPA_P_11_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA14\20210105_ACPA_P_11_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA39] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS16.pin 20210155_APCA_POS16 20210155_APCA_POS16_percolator_target_psms.tsv 20210155_APCA_POS16_percolator_decoy_psms.tsv interact-20210155_APCA_POS16 DDA 0.5 F:\PXD031498\20210155_APCA_POS16.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA39\20210155_APCA_POS16_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA39\20210155_APCA_POS16_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA41] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS18.pin 20210155_APCA_POS18 20210155_APCA_POS18_percolator_target_psms.tsv 20210155_APCA_POS18_percolator_decoy_psms.tsv interact-20210155_APCA_POS18 DDA 0.5 F:\PXD031498\20210155_APCA_POS18.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA41\20210155_APCA_POS18_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA41\20210155_APCA_POS18_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_2.pin 20210105_ACPA_N_2 20210105_ACPA_N_2_percolator_target_psms.tsv 20210105_ACPA_N_2_percolator_decoy_psms.tsv interact-20210105_ACPA_N_2 DDA 0.5 F:\PXD031498\20210105_ACPA_N_2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA8\20210105_ACPA_N_2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA8\20210105_ACPA_N_2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC18] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC14.pin 20210155_HC14 20210155_HC14_percolator_target_psms.tsv 20210155_HC14_percolator_decoy_psms.tsv interact-20210155_HC14 DDA 0.5 F:\PXD031498\20210155_HC14.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC18\20210155_HC14_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC18\20210155_HC14_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA47] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS23.pin 20210155_APCA_POS23 20210155_APCA_POS23_percolator_target_psms.tsv 20210155_APCA_POS23_percolator_decoy_psms.tsv interact-20210155_APCA_POS23 DDA 0.5 F:\PXD031498\20210155_APCA_POS23.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA47\20210155_APCA_POS23_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA47\20210155_APCA_POS23_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA35] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS12.pin 20210155_APCA_POS12 20210155_APCA_POS12_percolator_target_psms.tsv 20210155_APCA_POS12_percolator_decoy_psms.tsv interact-20210155_APCA_POS12 DDA 0.5 F:\PXD031498\20210155_APCA_POS12.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA35\20210155_APCA_POS12_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA35\20210155_APCA_POS12_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_2_20210330170407.pin 20210105_HC_2_20210330170407 20210105_HC_2_20210330170407_percolator_target_psms.tsv 20210105_HC_2_20210330170407_percolator_decoy_psms.tsv interact-20210105_HC_2_20210330170407 DDA 0.5 F:\PXD031498\20210105_HC_2_20210330170407.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC6\20210105_HC_2_20210330170407_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC6\20210105_HC_2_20210330170407_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC6.pin 20210155_HC6 20210155_HC6_percolator_target_psms.tsv 20210155_HC6_percolator_decoy_psms.tsv interact-20210155_HC6 DDA 0.5 F:\PXD031498\20210155_HC6.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC27\20210155_HC6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC27\20210155_HC6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA44] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS20.pin 20210155_APCA_POS20 20210155_APCA_POS20_percolator_target_psms.tsv 20210155_APCA_POS20_percolator_decoy_psms.tsv interact-20210155_APCA_POS20 DDA 0.5 F:\PXD031498\20210155_APCA_POS20.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA44\20210155_APCA_POS20_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA44\20210155_APCA_POS20_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA50] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS26.pin 20210155_APCA_POS26 20210155_APCA_POS26_percolator_target_psms.tsv 20210155_APCA_POS26_percolator_decoy_psms.tsv interact-20210155_APCA_POS26 DDA 0.5 F:\PXD031498\20210155_APCA_POS26.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA50\20210155_APCA_POS26_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA50\20210155_APCA_POS26_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA38] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS15.pin 20210155_APCA_POS15 20210155_APCA_POS15_percolator_target_psms.tsv 20210155_APCA_POS15_percolator_decoy_psms.tsv interact-20210155_APCA_POS15 DDA 0.5 F:\PXD031498\20210155_APCA_POS15.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA38\20210155_APCA_POS15_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA38\20210155_APCA_POS15_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_6.pin 20210105_HC_6 20210105_HC_6_percolator_target_psms.tsv 20210105_HC_6_percolator_decoy_psms.tsv interact-20210105_HC_6 DDA 0.5 F:\PXD031498\20210105_HC_6.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC10\20210105_HC_6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC10\20210105_HC_6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC17.pin 20210155_HC17 20210155_HC17_percolator_target_psms.tsv 20210155_HC17_percolator_decoy_psms.tsv interact-20210155_HC17 DDA 0.5 F:\PXD031498\20210155_HC17.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC21\20210155_HC17_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC21\20210155_HC17_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC2_20210513153447.pin 20210155_HC2_20210513153447 20210155_HC2_20210513153447_percolator_target_psms.tsv 20210155_HC2_20210513153447_percolator_decoy_psms.tsv interact-20210155_HC2_20210513153447 DDA 0.5 F:\PXD031498\20210155_HC2_20210513153447.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC23\20210155_HC2_20210513153447_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC23\20210155_HC2_20210513153447_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA21] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_6.pin 20210105_ACPA_P_6 20210105_ACPA_P_6_percolator_target_psms.tsv 20210105_ACPA_P_6_percolator_decoy_psms.tsv interact-20210105_ACPA_P_6 DDA 0.5 F:\PXD031498\20210105_ACPA_P_6.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA21\20210105_ACPA_P_6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA21\20210105_ACPA_P_6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA58] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS7.pin 20210155_APCA_POS7 20210155_APCA_POS7_percolator_target_psms.tsv 20210155_APCA_POS7_percolator_decoy_psms.tsv interact-20210155_APCA_POS7 DDA 0.5 F:\PXD031498\20210155_APCA_POS7.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA58\20210155_APCA_POS7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA58\20210155_APCA_POS7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA6] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS3.pin 20210070_APCA_POS3 20210070_APCA_POS3_percolator_target_psms.tsv 20210070_APCA_POS3_percolator_decoy_psms.tsv interact-20210070_APCA_POS3 DDA 0.5 F:\PXD031498\20210070_APCA_POS3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA6\20210070_APCA_POS3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA6\20210070_APCA_POS3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA43] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS2.pin 20210155_APCA_POS2 20210155_APCA_POS2_percolator_target_psms.tsv 20210155_APCA_POS2_percolator_decoy_psms.tsv interact-20210155_APCA_POS2 DDA 0.5 F:\PXD031498\20210155_APCA_POS2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA43\20210155_APCA_POS2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA43\20210155_APCA_POS2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA33] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS10.pin 20210155_APCA_POS10 20210155_APCA_POS10_percolator_target_psms.tsv 20210155_APCA_POS10_percolator_decoy_psms.tsv interact-20210155_APCA_POS10 DDA 0.5 F:\PXD031498\20210155_APCA_POS10.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA33\20210155_APCA_POS10_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA33\20210155_APCA_POS10_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_1_20210330145706.pin 20210105_HC_1_20210330145706 20210105_HC_1_20210330145706_percolator_target_psms.tsv 20210105_HC_1_20210330145706_percolator_decoy_psms.tsv interact-20210105_HC_1_20210330145706 DDA 0.5 F:\PXD031498\20210105_HC_1_20210330145706.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC5\20210105_HC_1_20210330145706_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC5\20210105_HC_1_20210330145706_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA45] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS21.pin 20210155_APCA_POS21 20210155_APCA_POS21_percolator_target_psms.tsv 20210155_APCA_POS21_percolator_decoy_psms.tsv interact-20210155_APCA_POS21 DDA 0.5 F:\PXD031498\20210155_APCA_POS21.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA45\20210155_APCA_POS21_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA45\20210155_APCA_POS21_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC11.pin 20210155_HC11 20210155_HC11_percolator_target_psms.tsv 20210155_HC11_percolator_decoy_psms.tsv interact-20210155_HC11 DDA 0.5 F:\PXD031498\20210155_HC11.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC15\20210155_HC11_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC15\20210155_HC11_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC8] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_4.pin 20210105_HC_4 20210105_HC_4_percolator_target_psms.tsv 20210105_HC_4_percolator_decoy_psms.tsv interact-20210105_HC_4 DDA 0.5 F:\PXD031498\20210105_HC_4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC8\20210105_HC_4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC8\20210105_HC_4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_4.pin 20210105_ACPA_P_4 20210105_ACPA_P_4_percolator_target_psms.tsv 20210105_ACPA_P_4_percolator_decoy_psms.tsv interact-20210105_ACPA_P_4 DDA 0.5 F:\PXD031498\20210105_ACPA_P_4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA19\20210105_ACPA_P_4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA19\20210105_ACPA_P_4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC9.pin 20210155_HC9 20210155_HC9_percolator_target_psms.tsv 20210155_HC9_percolator_decoy_psms.tsv interact-20210155_HC9 DDA 0.5 F:\PXD031498\20210155_HC9.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC30\20210155_HC9_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC30\20210155_HC9_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA23] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_8.pin 20210105_ACPA_P_8 20210105_ACPA_P_8_percolator_target_psms.tsv 20210105_ACPA_P_8_percolator_decoy_psms.tsv interact-20210105_ACPA_P_8 DDA 0.5 F:\PXD031498\20210105_ACPA_P_8.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA23\20210105_ACPA_P_8_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA23\20210105_ACPA_P_8_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA36] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS13.pin 20210155_APCA_POS13 20210155_APCA_POS13_percolator_target_psms.tsv 20210155_APCA_POS13_percolator_decoy_psms.tsv interact-20210155_APCA_POS13 DDA 0.5 F:\PXD031498\20210155_APCA_POS13.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA36\20210155_APCA_POS13_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA36\20210155_APCA_POS13_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA5] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS2.pin 20210070_APCA_POS2 20210070_APCA_POS2_percolator_target_psms.tsv 20210070_APCA_POS2_percolator_decoy_psms.tsv interact-20210070_APCA_POS2 DDA 0.5 F:\PXD031498\20210070_APCA_POS2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA5\20210070_APCA_POS2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA5\20210070_APCA_POS2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_5.pin 20210105_HC_5 20210105_HC_5_percolator_target_psms.tsv 20210105_HC_5_percolator_decoy_psms.tsv interact-20210105_HC_5 DDA 0.5 F:\PXD031498\20210105_HC_5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC9\20210105_HC_5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC9\20210105_HC_5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA57] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS6.pin 20210155_APCA_POS6 20210155_APCA_POS6_percolator_target_psms.tsv 20210155_APCA_POS6_percolator_decoy_psms.tsv interact-20210155_APCA_POS6 DDA 0.5 F:\PXD031498\20210155_APCA_POS6.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA57\20210155_APCA_POS6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA57\20210155_APCA_POS6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA54] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS3.pin 20210155_APCA_POS3 20210155_APCA_POS3_percolator_target_psms.tsv 20210155_APCA_POS3_percolator_decoy_psms.tsv interact-20210155_APCA_POS3 DDA 0.5 F:\PXD031498\20210155_APCA_POS3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA54\20210155_APCA_POS3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA54\20210155_APCA_POS3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC13.pin 20210155_HC13 20210155_HC13_percolator_target_psms.tsv 20210155_HC13_percolator_decoy_psms.tsv interact-20210155_HC13 DDA 0.5 F:\PXD031498\20210155_HC13.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC17\20210155_HC13_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC17\20210155_HC13_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA32] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS1.pin 20210155_APCA_POS1 20210155_APCA_POS1_percolator_target_psms.tsv 20210155_APCA_POS1_percolator_decoy_psms.tsv interact-20210155_APCA_POS1 DDA 0.5 F:\PXD031498\20210155_APCA_POS1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA32\20210155_APCA_POS1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA32\20210155_APCA_POS1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA48] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS24.pin 20210155_APCA_POS24 20210155_APCA_POS24_percolator_target_psms.tsv 20210155_APCA_POS24_percolator_decoy_psms.tsv interact-20210155_APCA_POS24 DDA 0.5 F:\PXD031498\20210155_APCA_POS24.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA48\20210155_APCA_POS24_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA48\20210155_APCA_POS24_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA20] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_5.pin 20210105_ACPA_P_5 20210105_ACPA_P_5_percolator_target_psms.tsv 20210105_ACPA_P_5_percolator_decoy_psms.tsv interact-20210105_ACPA_P_5 DDA 0.5 F:\PXD031498\20210105_ACPA_P_5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA20\20210105_ACPA_P_5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA20\20210105_ACPA_P_5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG1.pin 20210155_APCA_NEG1 20210155_APCA_NEG1_percolator_target_psms.tsv 20210155_APCA_NEG1_percolator_decoy_psms.tsv interact-20210155_APCA_NEG1 DDA 0.5 F:\PXD031498\20210155_APCA_NEG1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA25\20210155_APCA_NEG1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA25\20210155_APCA_NEG1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA53] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS29_20210519114001.pin 20210155_APCA_POS29_20210519114001 20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv 20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv interact-20210155_APCA_POS29_20210519114001 DDA 0.5 F:\PXD031498\20210155_APCA_POS29_20210519114001.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA53\20210155_APCA_POS29_20210519114001_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_3.pin 20210105_HC_3 20210105_HC_3_percolator_target_psms.tsv 20210105_HC_3_percolator_decoy_psms.tsv interact-20210105_HC_3 DDA 0.5 F:\PXD031498\20210105_HC_3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC7\20210105_HC_3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC7\20210105_HC_3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA13] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_10.pin 20210105_ACPA_P_10 20210105_ACPA_P_10_percolator_target_psms.tsv 20210105_ACPA_P_10_percolator_decoy_psms.tsv interact-20210105_ACPA_P_10 DDA 0.5 F:\PXD031498\20210105_ACPA_P_10.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA13\20210105_ACPA_P_10_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA13\20210105_ACPA_P_10_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_POS1.pin 20210070_APCA_POS1 20210070_APCA_POS1_percolator_target_psms.tsv 20210070_APCA_POS1_percolator_decoy_psms.tsv interact-20210070_APCA_POS1 DDA 0.5 F:\PXD031498\20210070_APCA_POS1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA4\20210070_APCA_POS1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA4\20210070_APCA_POS1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA30] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG6.pin 20210155_APCA_NEG6 20210155_APCA_NEG6_percolator_target_psms.tsv 20210155_APCA_NEG6_percolator_decoy_psms.tsv interact-20210155_APCA_NEG6 DDA 0.5 F:\PXD031498\20210155_APCA_NEG6.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA30\20210155_APCA_NEG6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA30\20210155_APCA_NEG6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC1.pin 20210070_HC1 20210070_HC1_percolator_target_psms.tsv 20210070_HC1_percolator_decoy_psms.tsv interact-20210070_HC1 DDA 0.5 F:\PXD031498\20210070_HC1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC1\20210070_HC1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC1\20210070_HC1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_13.pin 20210105_ACPA_P_13 20210105_ACPA_P_13_percolator_target_psms.tsv 20210105_ACPA_P_13_percolator_decoy_psms.tsv interact-20210105_ACPA_P_13 DDA 0.5 F:\PXD031498\20210105_ACPA_P_13.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA16\20210105_ACPA_P_13_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA16\20210105_ACPA_P_13_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA40] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS17.pin 20210155_APCA_POS17 20210155_APCA_POS17_percolator_target_psms.tsv 20210155_APCA_POS17_percolator_decoy_psms.tsv interact-20210155_APCA_POS17 DDA 0.5 F:\PXD031498\20210155_APCA_POS17.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA40\20210155_APCA_POS17_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA40\20210155_APCA_POS17_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA52] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS28.pin 20210155_APCA_POS28 20210155_APCA_POS28_percolator_target_psms.tsv 20210155_APCA_POS28_percolator_decoy_psms.tsv interact-20210155_APCA_POS28 DDA 0.5 F:\PXD031498\20210155_APCA_POS28.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA52\20210155_APCA_POS28_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA52\20210155_APCA_POS28_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_HC2.pin 20210070_HC2 20210070_HC2_percolator_target_psms.tsv 20210070_HC2_percolator_decoy_psms.tsv interact-20210070_HC2 DDA 0.5 F:\PXD031498\20210070_HC2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC2\20210070_HC2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC2\20210070_HC2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC28] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC7.pin 20210155_HC7 20210155_HC7_percolator_target_psms.tsv 20210155_HC7_percolator_decoy_psms.tsv interact-20210155_HC7 DDA 0.5 F:\PXD031498\20210155_HC7.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC28\20210155_HC7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC28\20210155_HC7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC25] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC4.pin 20210155_HC4 20210155_HC4_percolator_target_psms.tsv 20210155_HC4_percolator_decoy_psms.tsv interact-20210155_HC4 DDA 0.5 F:\PXD031498\20210155_HC4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC25\20210155_HC4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC25\20210155_HC4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA37] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS14.pin 20210155_APCA_POS14 20210155_APCA_POS14_percolator_target_psms.tsv 20210155_APCA_POS14_percolator_decoy_psms.tsv interact-20210155_APCA_POS14 DDA 0.5 F:\PXD031498\20210155_APCA_POS14.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA37\20210155_APCA_POS14_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA37\20210155_APCA_POS14_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC16] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC12.pin 20210155_HC12 20210155_HC12_percolator_target_psms.tsv 20210155_HC12_percolator_decoy_psms.tsv interact-20210155_HC12 DDA 0.5 F:\PXD031498\20210155_HC12.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC16\20210155_HC12_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC16\20210155_HC12_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA49] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS25.pin 20210155_APCA_POS25 20210155_APCA_POS25_percolator_target_psms.tsv 20210155_APCA_POS25_percolator_decoy_psms.tsv interact-20210155_APCA_POS25 DDA 0.5 F:\PXD031498\20210155_APCA_POS25.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA49\20210155_APCA_POS25_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA49\20210155_APCA_POS25_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA9] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_3.pin 20210105_ACPA_N_3 20210105_ACPA_N_3_percolator_target_psms.tsv 20210105_ACPA_N_3_percolator_decoy_psms.tsv interact-20210105_ACPA_N_3 DDA 0.5 F:\PXD031498\20210105_ACPA_N_3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA9\20210105_ACPA_N_3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA9\20210105_ACPA_N_3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC19] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC15.pin 20210155_HC15 20210155_HC15_percolator_target_psms.tsv 20210155_HC15_percolator_decoy_psms.tsv interact-20210155_HC15 DDA 0.5 F:\PXD031498\20210155_HC15.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC19\20210155_HC15_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC19\20210155_HC15_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA46] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS22.pin 20210155_APCA_POS22 20210155_APCA_POS22_percolator_target_psms.tsv 20210155_APCA_POS22_percolator_decoy_psms.tsv interact-20210155_APCA_POS22 DDA 0.5 F:\PXD031498\20210155_APCA_POS22.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA46\20210155_APCA_POS22_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA46\20210155_APCA_POS22_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC1_20210513132744.pin 20210155_HC1_20210513132744 20210155_HC1_20210513132744_percolator_target_psms.tsv 20210155_HC1_20210513132744_percolator_decoy_psms.tsv interact-20210155_HC1_20210513132744 DDA 0.5 F:\PXD031498\20210155_HC1_20210513132744.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC22\20210155_HC1_20210513132744_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC22\20210155_HC1_20210513132744_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC11] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_7.pin 20210105_HC_7 20210105_HC_7_percolator_target_psms.tsv 20210105_HC_7_percolator_decoy_psms.tsv interact-20210105_HC_7 DDA 0.5 F:\PXD031498\20210105_HC_7.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC11\20210105_HC_7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC11\20210105_HC_7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG5.pin 20210155_APCA_NEG5 20210155_APCA_NEG5_percolator_target_psms.tsv 20210155_APCA_NEG5_percolator_decoy_psms.tsv interact-20210155_APCA_NEG5 DDA 0.5 F:\PXD031498\20210155_APCA_NEG5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA29\20210155_APCA_NEG5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA29\20210155_APCA_NEG5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA3] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG3.pin 20210070_APCA_NEG3 20210070_APCA_NEG3_percolator_target_psms.tsv 20210070_APCA_NEG3_percolator_decoy_psms.tsv interact-20210070_APCA_NEG3 DDA 0.5 F:\PXD031498\20210070_APCA_NEG3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA3\20210070_APCA_NEG3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA3\20210070_APCA_NEG3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG2.pin 20210155_APCA_NEG2 20210155_APCA_NEG2_percolator_target_psms.tsv 20210155_APCA_NEG2_percolator_decoy_psms.tsv interact-20210155_APCA_NEG2 DDA 0.5 F:\PXD031498\20210155_APCA_NEG2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA26\20210155_APCA_NEG2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA26\20210155_APCA_NEG2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA7] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_1.pin 20210105_ACPA_N_1 20210105_ACPA_N_1_percolator_target_psms.tsv 20210105_ACPA_N_1_percolator_decoy_psms.tsv interact-20210105_ACPA_N_1 DDA 0.5 F:\PXD031498\20210105_ACPA_N_1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA7\20210105_ACPA_N_1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA7\20210105_ACPA_N_1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA10] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_N_4.pin 20210105_ACPA_N_4 20210105_ACPA_N_4_percolator_target_psms.tsv 20210105_ACPA_N_4_percolator_decoy_psms.tsv interact-20210105_ACPA_N_4 DDA 0.5 F:\PXD031498\20210105_ACPA_N_4.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA10\20210105_ACPA_N_4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA10\20210105_ACPA_N_4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA51] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS27.pin 20210155_APCA_POS27 20210155_APCA_POS27_percolator_target_psms.tsv 20210155_APCA_POS27_percolator_decoy_psms.tsv interact-20210155_APCA_POS27 DDA 0.5 F:\PXD031498\20210155_APCA_POS27.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA51\20210155_APCA_POS27_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA51\20210155_APCA_POS27_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA15] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_12.pin 20210105_ACPA_P_12 20210105_ACPA_P_12_percolator_target_psms.tsv 20210105_ACPA_P_12_percolator_decoy_psms.tsv interact-20210105_ACPA_P_12 DDA 0.5 F:\PXD031498\20210105_ACPA_P_12.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA15\20210105_ACPA_P_12_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA15\20210105_ACPA_P_12_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG1.pin 20210070_APCA_NEG1 20210070_APCA_NEG1_percolator_target_psms.tsv 20210070_APCA_NEG1_percolator_decoy_psms.tsv interact-20210070_APCA_NEG1 DDA 0.5 F:\PXD031498\20210070_APCA_NEG1.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA1\20210070_APCA_NEG1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA1\20210070_APCA_NEG1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA27] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG3.pin 20210155_APCA_NEG3 20210155_APCA_NEG3_percolator_target_psms.tsv 20210155_APCA_NEG3_percolator_decoy_psms.tsv interact-20210155_APCA_NEG3 DDA 0.5 F:\PXD031498\20210155_APCA_NEG3.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA27\20210155_APCA_NEG3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA27\20210155_APCA_NEG3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA59] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS8.pin 20210155_APCA_POS8 20210155_APCA_POS8_percolator_target_psms.tsv 20210155_APCA_POS8_percolator_decoy_psms.tsv interact-20210155_APCA_POS8 DDA 0.5 F:\PXD031498\20210155_APCA_POS8.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA59\20210155_APCA_POS8_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA59\20210155_APCA_POS8_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA17] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_2.pin 20210105_ACPA_P_2 20210105_ACPA_P_2_percolator_target_psms.tsv 20210105_ACPA_P_2_percolator_decoy_psms.tsv interact-20210105_ACPA_P_2 DDA 0.5 F:\PXD031498\20210105_ACPA_P_2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA17\20210105_ACPA_P_2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA17\20210105_ACPA_P_2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA42] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS19.pin 20210155_APCA_POS19 20210155_APCA_POS19_percolator_target_psms.tsv 20210155_APCA_POS19_percolator_decoy_psms.tsv interact-20210155_APCA_POS19 DDA 0.5 F:\PXD031498\20210155_APCA_POS19.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA42\20210155_APCA_POS19_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA42\20210155_APCA_POS19_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC4] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_10.pin 20210105_HC_10 20210105_HC_10_percolator_target_psms.tsv 20210105_HC_10_percolator_decoy_psms.tsv interact-20210105_HC_10 DDA 0.5 F:\PXD031498\20210105_HC_10.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC4\20210105_HC_10_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC4\20210105_HC_10_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA2] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210070_APCA_NEG2.pin 20210070_APCA_NEG2 20210070_APCA_NEG2_percolator_target_psms.tsv 20210070_APCA_NEG2_percolator_decoy_psms.tsv interact-20210070_APCA_NEG2 DDA 0.5 F:\PXD031498\20210070_APCA_NEG2.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA2\20210070_APCA_NEG2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA2\20210070_APCA_NEG2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC26] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC5.pin 20210155_HC5 20210155_HC5_percolator_target_psms.tsv 20210155_HC5_percolator_decoy_psms.tsv interact-20210155_HC5 DDA 0.5 F:\PXD031498\20210155_HC5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC26\20210155_HC5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC26\20210155_HC5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA31] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_NEG7.pin 20210155_APCA_NEG7 20210155_APCA_NEG7_percolator_target_psms.tsv 20210155_APCA_NEG7_percolator_decoy_psms.tsv interact-20210155_APCA_NEG7 DDA 0.5 F:\PXD031498\20210155_APCA_NEG7.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA31\20210155_APCA_NEG7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA31\20210155_APCA_NEG7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC29] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC8.pin 20210155_HC8 20210155_HC8_percolator_target_psms.tsv 20210155_HC8_percolator_decoy_psms.tsv interact-20210155_HC8 DDA 0.5 F:\PXD031498\20210155_HC8.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC29\20210155_HC8_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC29\20210155_HC8_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC12] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_HC_8_20210401021911.pin 20210105_HC_8_20210401021911 20210105_HC_8_20210401021911_percolator_target_psms.tsv 20210105_HC_8_20210401021911_percolator_decoy_psms.tsv interact-20210105_HC_8_20210401021911 DDA 0.5 F:\PXD031498\20210105_HC_8_20210401021911.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC12\20210105_HC_8_20210401021911_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC12\20210105_HC_8_20210401021911_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\HC24] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_HC3_20210513174150.pin 20210155_HC3_20210513174150 20210155_HC3_20210513174150_percolator_target_psms.tsv 20210155_HC3_20210513174150_percolator_decoy_psms.tsv interact-20210155_HC3_20210513174150 DDA 0.5 F:\PXD031498\20210155_HC3_20210513174150.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC24\20210155_HC3_20210513174150_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\HC24\20210155_HC3_20210513174150_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA60] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS9.pin 20210155_APCA_POS9 20210155_APCA_POS9_percolator_target_psms.tsv 20210155_APCA_POS9_percolator_decoy_psms.tsv interact-20210155_APCA_POS9 DDA 0.5 F:\PXD031498\20210155_APCA_POS9.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA60\20210155_APCA_POS9_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA60\20210155_APCA_POS9_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA22] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210105_ACPA_P_7.pin 20210105_ACPA_P_7 20210105_ACPA_P_7_percolator_target_psms.tsv 20210105_ACPA_P_7_percolator_decoy_psms.tsv interact-20210105_ACPA_P_7 DDA 0.5 F:\PXD031498\20210105_ACPA_P_7.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA22\20210105_ACPA_P_7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA22\20210105_ACPA_P_7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA56] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS5.pin 20210155_APCA_POS5 20210155_APCA_POS5_percolator_target_psms.tsv 20210155_APCA_POS5_percolator_decoy_psms.tsv interact-20210155_APCA_POS5 DDA 0.5 F:\PXD031498\20210155_APCA_POS5.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA56\20210155_APCA_POS5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA56\20210155_APCA_POS5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: F:\testbeijing\RA34] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20210155_APCA_POS11.pin 20210155_APCA_POS11 20210155_APCA_POS11_percolator_target_psms.tsv 20210155_APCA_POS11_percolator_decoy_psms.tsv interact-20210155_APCA_POS11 DDA 0.5 F:\PXD031498\20210155_APCA_POS11.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA34\20210155_APCA_POS11_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\jre\bin\java.exe -cp C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete F:\testbeijing\RA34\20210155_APCA_POS11_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 ProteinProphet [Work dir: F:\testbeijing] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe proteinprophet --maxppmdiff 2000000 --output combined F:\testbeijing\filelist_proteinprophet.txt time="23:31:20" level=info msg="Executing ProteinProphet v5.1.1" ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v6.0.0-rc15 Noctilucent, Build 202105101442-exported (Windows_NT-x86_64)) (no FPKM) (no groups) (using degen pep info) Reading in F:\testbeijing\HC1\interact-20210070_HC1.pep.xml... ...read in 0 1+, 21305 2+, 18039 3+, 2678 4+, 824 5+, 258 6+, 19 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC10\interact-20210105_HC_6.pep.xml... ...read in 0 1+, 16852 2+, 14415 3+, 1705 4+, 371 5+, 84 6+, 4 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC11\interact-20210105_HC_7.pep.xml... ...read in 0 1+, 15222 2+, 12287 3+, 1508 4+, 267 5+, 49 6+, 3 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC12\interact-20210105_HC_8_20210401021911.pep.xml... ...read in 0 1+, 14716 2+, 10858 3+, 1368 4+, 266 5+, 60 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC13\interact-20210105_HC_9.pep.xml... ...read in 0 1+, 17448 2+, 14385 3+, 1729 4+, 318 5+, 72 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC14\interact-20210155_HC10.pep.xml... ...read in 0 1+, 19186 2+, 16549 3+, 2635 4+, 771 5+, 228 6+, 31 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC15\interact-20210155_HC11.pep.xml... ...read in 0 1+, 18788 2+, 15859 3+, 2582 4+, 840 5+, 290 6+, 53 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC16\interact-20210155_HC12.pep.xml... ...read in 0 1+, 19332 2+, 15550 3+, 2501 4+, 775 5+, 290 6+, 36 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC17\interact-20210155_HC13.pep.xml... ...read in 0 1+, 16641 2+, 12485 3+, 1991 4+, 612 5+, 196 6+, 27 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC18\interact-20210155_HC14.pep.xml... ...read in 0 1+, 18522 2+, 15169 3+, 2527 4+, 815 5+, 278 6+, 51 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC19\interact-20210155_HC15.pep.xml... ...read in 0 1+, 21096 2+, 17527 3+, 2918 4+, 977 5+, 423 6+, 65 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC2\interact-20210070_HC2.pep.xml... ...read in 0 1+, 16941 2+, 12761 3+, 1917 4+, 495 5+, 132 6+, 9 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC20\interact-20210155_HC16.pep.xml... ...read in 0 1+, 20107 2+, 16441 3+, 2667 4+, 884 5+, 344 6+, 48 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC21\interact-20210155_HC17.pep.xml... ...read in 0 1+, 19265 2+, 16370 3+, 3059 4+, 1005 5+, 386 6+, 51 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC22\interact-20210155_HC1_20210513132744.pep.xml... ...read in 0 1+, 18963 2+, 15425 3+, 2792 4+, 898 5+, 334 6+, 37 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC23\interact-20210155_HC2_20210513153447.pep.xml... ...read in 0 1+, 17839 2+, 15435 3+, 3114 4+, 1105 5+, 377 6+, 47 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC24\interact-20210155_HC3_20210513174150.pep.xml... ...read in 0 1+, 18921 2+, 14977 3+, 2604 4+, 1023 5+, 425 6+, 94 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC25\interact-20210155_HC4.pep.xml... ...read in 0 1+, 18872 2+, 15656 3+, 2708 4+, 1023 5+, 409 6+, 63 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC26\interact-20210155_HC5.pep.xml... ...read in 0 1+, 20128 2+, 16306 3+, 2894 4+, 1040 5+, 476 6+, 82 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC27\interact-20210155_HC6.pep.xml... ...read in 0 1+, 19819 2+, 16215 3+, 2678 4+, 851 5+, 294 6+, 40 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC28\interact-20210155_HC7.pep.xml... ...read in 0 1+, 20304 2+, 16597 3+, 2779 4+, 907 5+, 305 6+, 42 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC29\interact-20210155_HC8.pep.xml... ...read in 0 1+, 18305 2+, 14584 3+, 2269 4+, 658 5+, 234 6+, 26 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC3\interact-20210070_HC3.pep.xml... ...read in 0 1+, 18976 2+, 15386 3+, 2434 4+, 688 5+, 208 6+, 19 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC30\interact-20210155_HC9.pep.xml... ...read in 0 1+, 20311 2+, 17412 3+, 3017 4+, 971 5+, 351 6+, 50 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC4\interact-20210105_HC_10.pep.xml... ...read in 0 1+, 17303 2+, 13997 3+, 1838 4+, 371 5+, 81 6+, 5 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC5\interact-20210105_HC_1_20210330145706.pep.xml... ...read in 0 1+, 19246 2+, 18943 3+, 2598 4+, 707 5+, 184 6+, 9 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC6\interact-20210105_HC_2_20210330170407.pep.xml... ...read in 0 1+, 18814 2+, 16930 3+, 2037 4+, 526 5+, 123 6+, 10 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC7\interact-20210105_HC_3.pep.xml... ...read in 0 1+, 17546 2+, 14515 3+, 1832 4+, 365 5+, 83 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC8\interact-20210105_HC_4.pep.xml... ...read in 0 1+, 16568 2+, 15676 3+, 1877 4+, 375 5+, 85 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\HC9\interact-20210105_HC_5.pep.xml... ...read in 0 1+, 16799 2+, 15738 3+, 1911 4+, 419 5+, 128 6+, 4 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA1\interact-20210070_APCA_NEG1.pep.xml... ...read in 0 1+, 17077 2+, 13708 3+, 2284 4+, 668 5+, 197 6+, 24 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA10\interact-20210105_ACPA_N_4.pep.xml... ...read in 0 1+, 19597 2+, 13741 3+, 1511 4+, 281 5+, 51 6+, 3 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA11\interact-20210105_ACPA_N_5.pep.xml... ...read in 0 1+, 18714 2+, 13573 3+, 1468 4+, 274 5+, 56 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA12\interact-20210105_ACPA_P_1.pep.xml... ...read in 0 1+, 17911 2+, 15257 3+, 2071 4+, 508 5+, 107 6+, 7 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA13\interact-20210105_ACPA_P_10.pep.xml... ...read in 0 1+, 17937 2+, 14389 3+, 1892 4+, 440 5+, 70 6+, 4 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA14\interact-20210105_ACPA_P_11.pep.xml... ...read in 0 1+, 19986 2+, 16507 3+, 1855 4+, 403 5+, 96 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA15\interact-20210105_ACPA_P_12.pep.xml... ...read in 0 1+, 20328 2+, 16186 3+, 1942 4+, 382 5+, 85 6+, 1 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA16\interact-20210105_ACPA_P_13.pep.xml... ...read in 0 1+, 19110 2+, 14849 3+, 1885 4+, 373 5+, 100 6+, 1 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA17\interact-20210105_ACPA_P_2.pep.xml... ...read in 0 1+, 18651 2+, 17647 3+, 2433 4+, 580 5+, 126 6+, 7 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA18\interact-20210105_ACPA_P_3.pep.xml... ...read in 0 1+, 19689 2+, 17862 3+, 2506 4+, 603 5+, 144 6+, 8 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA19\interact-20210105_ACPA_P_4.pep.xml... ...read in 0 1+, 19991 2+, 17710 3+, 2351 4+, 477 5+, 96 6+, 5 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA2\interact-20210070_APCA_NEG2.pep.xml... ...read in 0 1+, 16629 2+, 12954 3+, 2074 4+, 608 5+, 151 6+, 9 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA20\interact-20210105_ACPA_P_5.pep.xml... ...read in 0 1+, 12586 2+, 9846 3+, 1467 4+, 300 5+, 44 6+, 0 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA21\interact-20210105_ACPA_P_6.pep.xml... ...read in 0 1+, 21999 2+, 17183 3+, 2302 4+, 485 5+, 95 6+, 6 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA22\interact-20210105_ACPA_P_7.pep.xml... ...read in 0 1+, 19033 2+, 15144 3+, 1950 4+, 411 5+, 84 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA23\interact-20210105_ACPA_P_8.pep.xml... ...read in 0 1+, 18981 2+, 15574 3+, 1990 4+, 458 5+, 99 6+, 1 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA24\interact-20210105_ACPA_P_9.pep.xml... ...read in 0 1+, 18991 2+, 14624 3+, 2030 4+, 462 5+, 74 6+, 4 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA25\interact-20210155_APCA_NEG1.pep.xml... ...read in 0 1+, 19349 2+, 15321 3+, 2421 4+, 808 5+, 307 6+, 42 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA26\interact-20210155_APCA_NEG2.pep.xml... ...read in 0 1+, 23407 2+, 17288 3+, 2288 4+, 698 5+, 199 6+, 21 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA27\interact-20210155_APCA_NEG3.pep.xml... ...read in 0 1+, 20511 2+, 17097 3+, 2528 4+, 843 5+, 253 6+, 37 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA28\interact-20210155_APCA_NEG4.pep.xml... ...read in 0 1+, 20291 2+, 16913 3+, 2659 4+, 878 5+, 276 6+, 40 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA29\interact-20210155_APCA_NEG5.pep.xml... ...read in 0 1+, 19864 2+, 16155 3+, 2809 4+, 1100 5+, 467 6+, 77 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA3\interact-20210070_APCA_NEG3.pep.xml... ...read in 0 1+, 18115 2+, 14510 3+, 2291 4+, 595 5+, 191 6+, 19 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA30\interact-20210155_APCA_NEG6.pep.xml... ...read in 0 1+, 20097 2+, 16614 3+, 2547 4+, 836 5+, 389 6+, 67 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA31\interact-20210155_APCA_NEG7.pep.xml... ...read in 0 1+, 19253 2+, 16148 3+, 2652 4+, 897 5+, 265 6+, 22 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA32\interact-20210155_APCA_POS1.pep.xml... ...read in 0 1+, 19987 2+, 16878 3+, 2874 4+, 997 5+, 330 6+, 45 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA33\interact-20210155_APCA_POS10.pep.xml... ...read in 0 1+, 18306 2+, 16250 3+, 2750 4+, 898 5+, 245 6+, 23 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA34\interact-20210155_APCA_POS11.pep.xml... ...read in 0 1+, 21631 2+, 17054 3+, 2163 4+, 669 5+, 220 6+, 16 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA35\interact-20210155_APCA_POS12.pep.xml... ...read in 0 1+, 19654 2+, 16475 3+, 2616 4+, 864 5+, 231 6+, 24 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA36\interact-20210155_APCA_POS13.pep.xml... ...read in 0 1+, 19424 2+, 17294 3+, 2835 4+, 966 5+, 322 6+, 57 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA37\interact-20210155_APCA_POS14.pep.xml... ...read in 0 1+, 19213 2+, 16592 3+, 2587 4+, 815 5+, 282 6+, 41 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA38\interact-20210155_APCA_POS15.pep.xml... ...read in 0 1+, 19765 2+, 17216 3+, 2663 4+, 897 5+, 327 6+, 49 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA39\interact-20210155_APCA_POS16.pep.xml... ...read in 0 1+, 17701 2+, 15549 3+, 2911 4+, 1178 5+, 409 6+, 87 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA4\interact-20210070_APCA_POS1.pep.xml... ...read in 0 1+, 18834 2+, 16210 3+, 2319 4+, 692 5+, 204 6+, 14 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA40\interact-20210155_APCA_POS17.pep.xml... ...read in 0 1+, 20678 2+, 18247 3+, 2878 4+, 953 5+, 294 6+, 39 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA41\interact-20210155_APCA_POS18.pep.xml... ...read in 0 1+, 20456 2+, 16866 3+, 2461 4+, 790 5+, 246 6+, 44 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA42\interact-20210155_APCA_POS19.pep.xml... ...read in 0 1+, 19151 2+, 15711 3+, 2276 4+, 663 5+, 221 6+, 36 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA43\interact-20210155_APCA_POS2.pep.xml... ...read in 0 1+, 19225 2+, 16403 3+, 2651 4+, 827 5+, 243 6+, 43 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA44\interact-20210155_APCA_POS20.pep.xml... ...read in 0 1+, 21156 2+, 17478 3+, 2616 4+, 836 5+, 248 6+, 30 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA45\interact-20210155_APCA_POS21.pep.xml... ...read in 0 1+, 20665 2+, 17785 3+, 2763 4+, 903 5+, 262 6+, 43 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA46\interact-20210155_APCA_POS22.pep.xml... ...read in 0 1+, 19800 2+, 17253 3+, 2549 4+, 771 5+, 254 6+, 27 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA47\interact-20210155_APCA_POS23.pep.xml... ...read in 0 1+, 18361 2+, 15611 3+, 2436 4+, 845 5+, 265 6+, 38 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA48\interact-20210155_APCA_POS24.pep.xml... ...read in 0 1+, 20027 2+, 17736 3+, 2826 4+, 997 5+, 313 6+, 63 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA49\interact-20210155_APCA_POS25.pep.xml... ...read in 0 1+, 20128 2+, 17188 3+, 2482 4+, 804 5+, 307 6+, 42 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA5\interact-20210070_APCA_POS2.pep.xml... ...read in 0 1+, 19699 2+, 17130 3+, 2614 4+, 750 5+, 199 6+, 18 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA50\interact-20210155_APCA_POS26.pep.xml... ...read in 0 1+, 18532 2+, 14592 3+, 2313 4+, 767 5+, 273 6+, 52 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA51\interact-20210155_APCA_POS27.pep.xml... ...read in 0 1+, 18579 2+, 14353 3+, 2238 4+, 753 5+, 253 6+, 39 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA52\interact-20210155_APCA_POS28.pep.xml... ...read in 0 1+, 18660 2+, 15654 3+, 2451 4+, 864 5+, 244 6+, 32 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA53\interact-20210155_APCA_POS29_20210519114001.pep.xml... ...read in 0 1+, 18840 2+, 15615 3+, 2456 4+, 801 5+, 205 6+, 26 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA54\interact-20210155_APCA_POS3.pep.xml... ...read in 0 1+, 19105 2+, 15860 3+, 2667 4+, 895 5+, 292 6+, 38 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA55\interact-20210155_APCA_POS4.pep.xml... ...read in 0 1+, 19812 2+, 16077 3+, 2509 4+, 828 5+, 303 6+, 68 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA56\interact-20210155_APCA_POS5.pep.xml... ...read in 0 1+, 19299 2+, 16270 3+, 2692 4+, 833 5+, 267 6+, 27 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA57\interact-20210155_APCA_POS6.pep.xml... ...read in 0 1+, 18486 2+, 16253 3+, 2868 4+, 957 5+, 275 6+, 51 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA58\interact-20210155_APCA_POS7.pep.xml... ...read in 0 1+, 19636 2+, 16566 3+, 2585 4+, 797 5+, 252 6+, 29 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA59\interact-20210155_APCA_POS8.pep.xml... ...read in 0 1+, 19254 2+, 16419 3+, 2778 4+, 906 5+, 289 6+, 45 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA6\interact-20210070_APCA_POS3.pep.xml... ...read in 0 1+, 20807 2+, 18785 3+, 2922 4+, 994 5+, 273 6+, 30 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA60\interact-20210155_APCA_POS9.pep.xml... ...read in 0 1+, 17680 2+, 16944 3+, 3020 4+, 1293 5+, 304 6+, 28 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA7\interact-20210105_ACPA_N_1.pep.xml... ...read in 0 1+, 21471 2+, 16035 3+, 1823 4+, 357 5+, 122 6+, 6 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA8\interact-20210105_ACPA_N_2.pep.xml... ...read in 0 1+, 19361 2+, 15256 3+, 1738 4+, 363 5+, 80 6+, 2 7+ spectra with min prob 0.05 Reading in F:\testbeijing\RA9\interact-20210105_ACPA_N_3.pep.xml... ...read in 0 1+, 18684 2+, 13765 3+, 1522 4+, 286 5+, 52 6+, 2 7+ spectra with min prob 0.05 Initializing 1156101 peptide weights: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% Calculating protein lengths and molecular weights from database F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta .........:.........:.........:.........:.........:.........:.........:.........:.........:.........1000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........2000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........3000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........4000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........6000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........7000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........8000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........9000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........10000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........11000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........12000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........13000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........14000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........15000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........16000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........17000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........18000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........19000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........20000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........21000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........22000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........23000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........24000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........25000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........26000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........27000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........28000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........29000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........30000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........31000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........32000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........33000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........34000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........35000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........36000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........37000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........38000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........39000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........40000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........41000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........42000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........43000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........44000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........45000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........46000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........47000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........48000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........49000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........50000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........51000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........52000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........53000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........54000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........55000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........56000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........57000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........58000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........59000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........60000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........61000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........62000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........63000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........64000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........65000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........66000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........67000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........68000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........69000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........70000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........71000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........72000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........73000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........74000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........75000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........76000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........77000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........78000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........79000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........80000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........81000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........82000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........83000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........84000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........85000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........86000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........87000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........88000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........89000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........90000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........91000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........92000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........93000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........94000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........95000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........96000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........97000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........98000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........99000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........100000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........101000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........102000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........103000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........104000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........105000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........106000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........107000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........108000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........109000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........110000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........111000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........112000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........113000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........114000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........115000 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.........:.........:.........:.........:.........:.........:.........:.........:.........:.........5021000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5022000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5023000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5024000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5025000 .........:.... Total: 5025149 Computing degenerate peptides for 1527674 proteins: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 1871675 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Calculating sensitivity...and error tables... Computing MU for 1871675 proteins: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%INFO: mu=0.000237981, db_size=524567750 ...100% time="23:42:01" level=info msg=Done Process 'ProteinProphet' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe database --annotate F:\2024-07-25-lncpep-decoys-reviewed-contam-UP000005640.fasta --prefix rev_ time="23:42:02" level=info msg="Executing Database v5.1.1" time="23:42:02" level=info msg="Annotating the database" time="23:42:06" level=info msg=Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherFilter [Work dir: F:\testbeijing\HC1] C:\Users\User\AppData\Local\Temp\Rar$EXa13424.45482\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --sequential --prot 0.01 --picked --tag rev_ --pepxml F:\testbeijing\HC1 --protxml F:\testbeijing\combined.prot.xml --razor time="23:42:07" level=info msg="Executing Filter v5.1.1" time="23:42:07" level=info msg="Processing peptide identification files" time="23:42:07" level=info msg="Parsing F:\\testbeijing\\HC1\\interact-20210070_HC1.pep.xml" time="23:45:09" level=info msg="1+ Charge profile" decoy=0 target=0 time="23:45:09" level=info msg="2+ Charge profile" decoy=1540 target=19765 time="23:45:09" level=info msg="3+ Charge profile" decoy=1130 target=16909 time="23:45:09" level=info msg="4+ Charge profile" decoy=190 target=2488 time="23:45:09" level=info msg="5+ Charge profile" decoy=73 target=751 time="23:45:09" level=info msg="6+ Charge profile" decoy=26 target=232 time="23:45:09" level=info msg="Database search results" ions=33589 peptides=32518 psms=43123 time="23:45:09" level=info msg="Converged to 1.00 % FDR with 11415 PSMs" decoy=114 threshold=0.936289 total=11529 time="23:45:09" level=info msg="Converged to 0.98 % FDR with 2854 Peptides" decoy=28 threshold=0.971292 total=2882 time="23:45:09" level=info msg="Converged to 0.99 % FDR with 3732 Ions" decoy=37 threshold=0.965332 total=3769 time="23:45:09" level=info msg="Protein inference results" decoy=17675 target=716558 panic: the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter goroutine 1 [running]: github.com/Nesvilab/philosopher/lib/msg.callLogrus({0xc09bb810a0, 0x6c}, {0x163cfcf?, 0x1?}) /mnt/g/Dropbox/code/philosopher/lib/msg/msg.go:327 +0x2d8 github.com/Nesvilab/philosopher/lib/msg.Custom({0x17a7660?, 0xc0533532a0?}, {0x163cfcf, 0x5}) /mnt/g/Dropbox/code/philosopher/lib/msg/msg.go:15 +0x68 github.com/Nesvilab/philosopher/lib/fil.ProtXMLFilter({{0x0, 0x0}, {0xc0000ac0f8, 0x4}, {0xc063149ac0, 0x1a}, {0xc096e00000, 0xb3419, 0xd3b33}}, 0x3f847ae147ae147b, ...) /mnt/g/Dropbox/code/philosopher/lib/fil/fdr.go:548 +0x8e5 github.com/Nesvilab/philosopher/lib/fil.ProcessProteinIdentifications({{0x0, 0x0}, {0xc0000ac0f8, 0x4}, {0xc063149ac0, 0x1a}, {0xc096e00000, 0xb3419, 0xd3b33}}, 0x0?, ...) /mnt/g/Dropbox/code/philosopher/lib/fil/fil.go:670 +0x5eb github.com/Nesvilab/philosopher/lib/fil.Run({{0xc0000ca300, 0x24}, {0xc0000c04e0, 0x12}, {0xc000126280, 0x45}, {0xc0000ca330, 0x21}, {0xc0000c04f8, 0x18}, ...}) /mnt/g/Dropbox/code/philosopher/lib/fil/fil.go:97 +0xb06 github.com/Nesvilab/philosopher/cmd.glob..func5(0xc0000d8500?, {0x163c97c?, 0x4?, 0x163c980?}) /mnt/g/Dropbox/code/philosopher/cmd/filter.go:47 +0x4b7 github.com/spf13/cobra.(*Command).execute(0x3272180, {0xc0000e64d0, 0xb, 0xb}) /mnt/g/Dropbox/code/philosopher/vendor/github.com/spf13/cobra/command.go:920 +0x863 github.com/spf13/cobra.(*Command).ExecuteC(0x3274120) /mnt/g/Dropbox/code/philosopher/vendor/github.com/spf13/cobra/command.go:1044 +0x3a5 github.com/spf13/cobra.(*Command).Execute(...) /mnt/g/Dropbox/code/philosopher/vendor/github.com/spf13/cobra/command.go:968 github.com/Nesvilab/philosopher/cmd.Execute() /mnt/g/Dropbox/code/philosopher/cmd/root.go:35 +0x1a main.main() /mnt/g/Dropbox/code/philosopher/main.go:23 +0x85 time="23:45:15" level=error msg="the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter" Process 'PhilosopherFilter' finished, exit code: 2 Process returned non-zero exit code, stopping ~~~~~~~~~~~~~~~~~~~~ Cancelling 272 remaining tasks