gsutil -q -o GSUtil:parallel_composite_upload_threshold=150M -m rsync -d -r gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/060724_DP1_Batch_2_3_NS2000_Pool/FASTQs/IFNB_B3_adt IFNB_B3_adt_0
gsutil -q -o GSUtil:parallel_composite_upload_threshold=150M -m rsync -d -r gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/062124_DP1_Batch_2_3_NOVA/062724_fastqs/IFNB_B3_adt IFNB_B3_adt_1
Load feature barcodes.
/cromwell_root/fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/101723_NS2000_DP1/101723_NS2000_ADT_HTO.csv is parsed. n_barcodes = 148, and barcode_len = 15.
In the index, 18 out of 257650 items are ambigious, percentage = 0.01%.
ntotA = 5, ntotBC = 9604.
TotalSeq type is automatically detected as TotalSeq-C, barcode starts from 0-based position 10.
Load cell barcodes.
/cromwell_root/regev-lab/resources/cellranger/3M-3pgex-may-2023.txt.gz is parsed. n_barcodes = 7372800, and barcode_len = 16.
In the index, 82135371 out of 295849913 items are ambigious, percentage = 27.76%.
Time spent on parsing cell barcodes = 281.00s.
Processed 1000000 reads.
Processed 2000000 reads.
Processed 3000000 reads.
Processed 4000000 reads.
Processed 5000000 reads.
Processed 6000000 reads.
Processed 7000000 reads.
Processed 8000000 reads.
Processed 9000000 reads.
Processed 10000000 reads.
Processed 11000000 reads.
Processed 12000000 reads.
Processed 13000000 reads.
Processed 14000000 reads.
Processed 15000000 reads.
Processed 16000000 reads.
Processed 17000000 reads.
Processed 18000000 reads.
Processed 19000000 reads.
Processed 20000000 reads.
Processed 21000000 reads.
Processed 22000000 reads.
Processed 23000000 reads.
Processed 24000000 reads.
Processed 25000000 reads.
Processed 26000000 reads.
Processed 27000000 reads.
Processed 28000000 reads.
Processed 29000000 reads.
Processed 30000000 reads.
Processed 31000000 reads.
Processed 32000000 reads.
Processed 33000000 reads.
Processed 34000000 reads.
Processed 35000000 reads.
Processed 36000000 reads.
Processed 37000000 reads.
Processed 38000000 reads.
Processed 39000000 reads.
Processed 40000000 reads.
Processed 41000000 reads.
Processed 42000000 reads.
Processed 43000000 reads.
Processed 44000000 reads.
Processed 45000000 reads.
Processed 46000000 reads.
Processed 47000000 reads.
Processed 48000000 reads.
Processed 49000000 reads.
Processed 50000000 reads.
Processed 51000000 reads.
Processed 52000000 reads.
Processed 53000000 reads.
Processed 54000000 reads.
Processed 55000000 reads.
Processed 56000000 reads.
Processed 57000000 reads.
Processed 58000000 reads.
Processed 59000000 reads.
Processed 60000000 reads.
Processed 61000000 reads.
Processed 62000000 reads.
Processed 63000000 reads.
Processed 64000000 reads.
Processed 65000000 reads.
Processed 66000000 reads.
Processed 67000000 reads.
Processed 68000000 reads.
Processed 69000000 reads.
Processed 70000000 reads.
Processed 71000000 reads.
Processed 72000000 reads.
Processed 73000000 reads.
Processed 74000000 reads.
Processed 75000000 reads.
Processed 76000000 reads.
Processed 77000000 reads.
Processed 78000000 reads.
Processed 79000000 reads.
Processed 80000000 reads.
Processed 81000000 reads.
Processed 82000000 reads.
Processed 83000000 reads.
Processed 84000000 reads.
Processed 85000000 reads.
Processed 86000000 reads.
Processed 87000000 reads.
Processed 88000000 reads.
Processed 89000000 reads.
Processed 90000000 reads.
Processed 91000000 reads.
Processed 92000000 reads.
Processed 93000000 reads.
Processed 94000000 reads.
Processed 95000000 reads.
Processed 96000000 reads.
Processed 97000000 reads.
Processed 98000000 reads.
Processed 99000000 reads.
Processed 100000000 reads.
Processed 101000000 reads.
Processed 102000000 reads.
Processed 103000000 reads.
Processed 104000000 reads.
Processed 105000000 reads.
Processed 106000000 reads.
Processed 107000000 reads.
Processed 108000000 reads.
Processed 109000000 reads.
Processed 110000000 reads.
Processed 111000000 reads.
Processed 112000000 reads.
Processed 113000000 reads.
Processed 114000000 reads.
Processed 115000000 reads.
Processed 116000000 reads.
Processed 117000000 reads.
Processed 118000000 reads.
Processed 119000000 reads.
Processed 120000000 reads.
Processed 121000000 reads.
Processed 122000000 reads.
Processed 123000000 reads.
Processed 124000000 reads.
Processed 125000000 reads.
Processed 126000000 reads.
Processed 127000000 reads.
Processed 128000000 reads.
Processed 129000000 reads.
Processed 130000000 reads.
Processed 131000000 reads.
Processed 132000000 reads.
Processed 133000000 reads.
Processed 134000000 reads.
Processed 135000000 reads.
Processed 136000000 reads.
Processed 137000000 reads.
Processed 138000000 reads.
Processed 139000000 reads.
Processed 140000000 reads.
Processed 141000000 reads.
Processed 142000000 reads.
Processed 143000000 reads.
Processed 144000000 reads.
Processed 145000000 reads.
Processed 146000000 reads.
Processed 147000000 reads.
Processed 148000000 reads.
Processed 149000000 reads.
Processed 150000000 reads.
Processed 151000000 reads.
Processed 152000000 reads.
Processed 153000000 reads.
Processed 154000000 reads.
Processed 155000000 reads.
Processed 156000000 reads.
Processed 157000000 reads.
Processed 158000000 reads.
Processed 159000000 reads.
Processed 160000000 reads.
Processed 161000000 reads.
Processed 162000000 reads.
Processed 163000000 reads.
Processed 164000000 reads.
Processed 165000000 reads.
Processed 166000000 reads.
Processed 167000000 reads.
Processed 168000000 reads.
Processed 169000000 reads.
Processed 170000000 reads.
Processed 171000000 reads.
Processed 172000000 reads.
Processed 173000000 reads.
Processed 174000000 reads.
Processed 175000000 reads.
Processed 176000000 reads.
Processed 177000000 reads.
Processed 178000000 reads.
Processed 179000000 reads.
Processed 180000000 reads.
Processed 181000000 reads.
Processed 182000000 reads.
Processed 183000000 reads.
Processed 184000000 reads.
Processed 185000000 reads.
Processed 186000000 reads.
Processed 187000000 reads.
Processed 188000000 reads.
Processed 189000000 reads.
Processed 190000000 reads.
Processed 191000000 reads.
Processed 192000000 reads.
Processed 193000000 reads.
Processed 194000000 reads.
Processed 195000000 reads.
Processed 196000000 reads.
Processed 197000000 reads.
Processed 198000000 reads.
Processed 199000000 reads.
Processed 200000000 reads.
Processed 201000000 reads.
Processed 202000000 reads.
Processed 203000000 reads.
Processed 204000000 reads.
Processed 205000000 reads.
Processed 206000000 reads.
Processed 207000000 reads.
Processed 208000000 reads.
Processed 209000000 reads.
Processed 210000000 reads.
Processed 211000000 reads.
Processed 212000000 reads.
Processed 213000000 reads.
Processed 214000000 reads.
Processed 215000000 reads.
Processed 216000000 reads.
Processed 217000000 reads.
Processed 218000000 reads.
Processed 219000000 reads.
Processed 220000000 reads.
Processed 221000000 reads.
Processed 222000000 reads.
Processed 223000000 reads.
Processed 224000000 reads.
Processed 225000000 reads.
Processed 226000000 reads.
Processed 227000000 reads.
Processed 228000000 reads.
Processed 229000000 reads.
Processed 230000000 reads.
Processed 231000000 reads.
Processed 232000000 reads.
Processed 233000000 reads.
Processed 234000000 reads.
Processed 235000000 reads.
Processed 236000000 reads.
Processed 237000000 reads.
Processed 238000000 reads.
Processed 239000000 reads.
Processed 240000000 reads.
Processed 241000000 reads.
Processed 242000000 reads.
Processed 243000000 reads.
Processed 244000000 reads.
Processed 245000000 reads.
Processed 246000000 reads.
Processed 247000000 reads.
Processed 248000000 reads.
Processed 249000000 reads.
Processed 250000000 reads.
Processed 251000000 reads.
Processed 252000000 reads.
Processed 253000000 reads.
Processed 254000000 reads.
Processed 255000000 reads.
Processed 256000000 reads.
Processed 257000000 reads.
Processed 258000000 reads.
Processed 259000000 reads.
Processed 260000000 reads.
Processed 261000000 reads.
Processed 262000000 reads.
Processed 263000000 reads.
Processed 264000000 reads.
Processed 265000000 reads.
Processed 266000000 reads.
Processed 267000000 reads.
Processed 268000000 reads.
Processed 269000000 reads.
Processed 270000000 reads.
Processed 271000000 reads.
Processed 272000000 reads.
Processed 273000000 reads.
Processed 274000000 reads.
Processed 275000000 reads.
Processed 276000000 reads.
Processed 277000000 reads.
Processed 278000000 reads.
Processed 279000000 reads.
Processed 280000000 reads.
Processed 281000000 reads.
Processed 282000000 reads.
Processed 283000000 reads.
Processed 284000000 reads.
Processed 285000000 reads.
Processed 286000000 reads.
Processed 287000000 reads.
Processed 288000000 reads.
Processed 289000000 reads.
Processed 290000000 reads.
Processed 291000000 reads.
Processed 292000000 reads.
Processed 293000000 reads.
Processed 294000000 reads.
Processed 295000000 reads.
Processed 296000000 reads.
Processed 297000000 reads.
Processed 298000000 reads.
Processed 299000000 reads.
Processed 300000000 reads.
Processed 301000000 reads.
Processed 302000000 reads.
Processed 303000000 reads.
Processed 304000000 reads.
Processed 305000000 reads.
Processed 306000000 reads.
Processed 307000000 reads.
Processed 308000000 reads.
Processed 309000000 reads.
Processed 310000000 reads.
Processed 311000000 reads.
Processed 312000000 reads.
Processed 313000000 reads.
Processed 314000000 reads.
Processed 315000000 reads.
Processed 316000000 reads.
Processed 317000000 reads.
Processed 318000000 reads.
Processed 319000000 reads.
Processed 320000000 reads.
Processed 321000000 reads.
Processed 322000000 reads.
Processed 323000000 reads.
Processed 324000000 reads.
Processed 325000000 reads.
Processed 326000000 reads.
Processed 327000000 reads.
Processed 328000000 reads.
Processed 329000000 reads.
Processed 330000000 reads.
Processed 331000000 reads.
Processed 332000000 reads.
Processed 333000000 reads.
Processed 334000000 reads.
Processed 335000000 reads.
Processed 336000000 reads.
Processed 337000000 reads.
Processed 338000000 reads.
Processed 339000000 reads.
Processed 340000000 reads.
Processed 341000000 reads.
Processed 342000000 reads.
Processed 343000000 reads.
Processed 344000000 reads.
Processed 345000000 reads.
Processed 346000000 reads.
Processed 347000000 reads.
Processed 348000000 reads.
Processed 349000000 reads.
Processed 350000000 reads.
Processed 351000000 reads.
Processed 352000000 reads.
Processed 353000000 reads.
Processed 354000000 reads.
Processed 355000000 reads.
Processed 356000000 reads.
Processed 357000000 reads.
Processed 358000000 reads.
Processed 359000000 reads.
Processed 360000000 reads.
Processed 361000000 reads.
Processed 362000000 reads.
Processed 363000000 reads.
Processed 364000000 reads.
Processed 365000000 reads.
Processed 366000000 reads.
Processed 367000000 reads.
Processed 368000000 reads.
Processed 369000000 reads.
Processed 370000000 reads.
Processed 371000000 reads.
Processed 372000000 reads.
Processed 373000000 reads.
Processed 374000000 reads.
Processed 375000000 reads.
Processed 376000000 reads.
Processed 377000000 reads.
Processed 378000000 reads.
Processed 379000000 reads.
Processed 380000000 reads.
Processed 381000000 reads.
Processed 382000000 reads.
Processed 383000000 reads.
Processed 384000000 reads.
Processed 385000000 reads.
Processed 386000000 reads.
Processed 387000000 reads.
Processed 388000000 reads.
Processed 389000000 reads.
Processed 390000000 reads.
Processed 391000000 reads.
Processed 392000000 reads.
Processed 393000000 reads.
Processed 394000000 reads.
Processed 395000000 reads.
Processed 396000000 reads.
Processed 397000000 reads.
Processed 398000000 reads.
Processed 399000000 reads.
Processed 400000000 reads.
Processed 401000000 reads.
Processed 402000000 reads.
Processed 403000000 reads.
Processed 404000000 reads.
Processed 405000000 reads.
Processed 406000000 reads.
Processed 407000000 reads.
Processed 408000000 reads.
Processed 409000000 reads.
Processed 410000000 reads.
Processed 411000000 reads.
Processed 412000000 reads.
Processed 413000000 reads.
Processed 414000000 reads.
Processed 415000000 reads.
Processed 416000000 reads.
Processed 417000000 reads.
Processed 418000000 reads.
Processed 419000000 reads.
Processed 420000000 reads.
Processed 421000000 reads.
Processed 422000000 reads.
Processed 423000000 reads.
Processed 424000000 reads.
Processed 425000000 reads.
Processed 426000000 reads.
Processed 427000000 reads.
Processed 428000000 reads.
Processed 429000000 reads.
Processed 430000000 reads.
Processed 431000000 reads.
Processed 432000000 reads.
Processed 433000000 reads.
Processed 434000000 reads.
Processed 435000000 reads.
Processed 436000000 reads.
Processed 437000000 reads.
Processed 438000000 reads.
Processed 439000000 reads.
Processed 440000000 reads.
Processed 441000000 reads.
Processed 442000000 reads.
Processed 443000000 reads.
Processed 444000000 reads.
Processed 445000000 reads.
Processed 446000000 reads.
Processed 447000000 reads.
Processed 448000000 reads.
Processed 449000000 reads.
Processed 450000000 reads.
Processed 451000000 reads.
Processed 452000000 reads.
Processed 453000000 reads.
Processed 454000000 reads.
Processed 455000000 reads.
Processed 456000000 reads.
Processed 457000000 reads.
Processed 458000000 reads.
Processed 459000000 reads.
Processed 460000000 reads.
Processed 461000000 reads.
Processed 462000000 reads.
Processed 463000000 reads.
Processed 464000000 reads.
Processed 465000000 reads.
Processed 466000000 reads.
Processed 467000000 reads.
Processed 468000000 reads.
Processed 469000000 reads.
Processed 470000000 reads.
Processed 471000000 reads.
Processed 472000000 reads.
Processed 473000000 reads.
Processed 474000000 reads.
Processed 475000000 reads.
Processed 476000000 reads.
Processed 477000000 reads.
Processed 478000000 reads.
Processed 479000000 reads.
Processed 480000000 reads.
Processed 481000000 reads.
Processed 482000000 reads.
Processed 483000000 reads.
Processed 484000000 reads.
Processed 485000000 reads.
Processed 486000000 reads.
Processed 487000000 reads.
Processed 488000000 reads.
Processed 489000000 reads.
Processed 490000000 reads.
Processed 491000000 reads.
Processed 492000000 reads.
Processed 493000000 reads.
Processed 494000000 reads.
Processed 495000000 reads.
Processed 496000000 reads.
Processed 497000000 reads.
Processed 498000000 reads.
Processed 499000000 reads.
Processed 500000000 reads.
Processed 501000000 reads.
Processed 502000000 reads.
Processed 503000000 reads.
Processed 504000000 reads.
Processed 505000000 reads.
Processed 506000000 reads.
Processed 507000000 reads.
Processed 508000000 reads.
Processed 509000000 reads.
Processed 510000000 reads.
Processed 511000000 reads.
Processed 512000000 reads.
Processed 513000000 reads.
Processed 514000000 reads.
Processed 515000000 reads.
Processed 516000000 reads.
Processed 517000000 reads.
Processed 518000000 reads.
Processed 519000000 reads.
Processed 520000000 reads.
Processed 521000000 reads.
Processed 522000000 reads.
Processed 523000000 reads.
Processed 524000000 reads.
Processed 525000000 reads.
Processed 526000000 reads.
Processed 527000000 reads.
Processed 528000000 reads.
Processed 529000000 reads.
Processed 530000000 reads.
Processed 531000000 reads.
Processed 532000000 reads.
Processed 533000000 reads.
Processed 534000000 reads.
Processed 535000000 reads.
Processed 536000000 reads.
Processed 537000000 reads.
Processed 538000000 reads.
Processed 539000000 reads.
Processed 540000000 reads.
Processed 541000000 reads.
Processed 542000000 reads.
Processed 543000000 reads.
Processed 544000000 reads.
Processed 545000000 reads.
Processed 546000000 reads.
Processed 547000000 reads.
Processed 548000000 reads.
Processed 549000000 reads.
Processed 550000000 reads.
Processed 551000000 reads.
Processed 552000000 reads.
Processed 553000000 reads.
Processed 554000000 reads.
Processed 555000000 reads.
Processed 556000000 reads.
Processed 557000000 reads.
Processed 558000000 reads.
Processed 559000000 reads.
Processed 560000000 reads.
Processed 561000000 reads.
Processed 562000000 reads.
Processed 563000000 reads.
Processed 564000000 reads.
Processed 565000000 reads.
Processed 566000000 reads.
Processed 567000000 reads.
Processed 568000000 reads.
Processed 569000000 reads.
Processed 570000000 reads.
Processed 571000000 reads.
Processed 572000000 reads.
Processed 573000000 reads.
Processed 574000000 reads.
Processed 575000000 reads.
Processed 576000000 reads.
Processed 577000000 reads.
Processed 578000000 reads.
Processed 579000000 reads.
Processed 580000000 reads.
Processed 581000000 reads.
Processed 582000000 reads.
Processed 583000000 reads.
Processed 584000000 reads.
Processed 585000000 reads.
Processed 586000000 reads.
Processed 587000000 reads.
Processed 588000000 reads.
Processed 589000000 reads.
Processed 590000000 reads.
Processed 591000000 reads.
Processed 592000000 reads.
Processed 593000000 reads.
Processed 594000000 reads.
Processed 595000000 reads.
Processed 596000000 reads.
Processed 597000000 reads.
Processed 598000000 reads.
Processed 599000000 reads.
Processed 600000000 reads.
Processed 601000000 reads.
Processed 602000000 reads.
Processed 603000000 reads.
Processed 604000000 reads.
Processed 605000000 reads.
Processed 606000000 reads.
Processed 607000000 reads.
Processed 608000000 reads.
Processed 609000000 reads.
Processed 610000000 reads.
Processed 611000000 reads.
Processed 612000000 reads.
Processed 613000000 reads.
Processed 614000000 reads.
Processed 615000000 reads.
Processed 616000000 reads.
Processed 617000000 reads.
Processed 618000000 reads.
Processed 619000000 reads.
Processed 620000000 reads.
Processed 621000000 reads.
Processed 622000000 reads.
Processed 623000000 reads.
Processed 624000000 reads.
Processed 625000000 reads.
Processed 626000000 reads.
Processed 627000000 reads.
Processed 628000000 reads.
Processed 629000000 reads.
Processed 630000000 reads.
Processed 631000000 reads.
Processed 632000000 reads.
Processed 633000000 reads.
Processed 634000000 reads.
Processed 635000000 reads.
Processed 636000000 reads.
Processed 637000000 reads.
Processed 638000000 reads.
Processed 639000000 reads.
Processed 640000000 reads.
Processed 641000000 reads.
Processed 642000000 reads.
Processed 643000000 reads.
Processed 644000000 reads.
Processed 645000000 reads.
Processed 646000000 reads.
Processed 647000000 reads.
Processed 648000000 reads.
Processed 649000000 reads.
Processed 650000000 reads.
Processed 651000000 reads.
Processed 652000000 reads.
Processed 653000000 reads.
Processed 654000000 reads.
Processed 655000000 reads.
Processed 656000000 reads.
Processed 657000000 reads.
Processed 658000000 reads.
Processed 659000000 reads.
Processed 660000000 reads.
Processed 661000000 reads.
Processed 662000000 reads.
Processed 663000000 reads.
Processed 664000000 reads.
Processed 665000000 reads.
Processed 666000000 reads.
Processed 667000000 reads.
Processed 668000000 reads.
Processed 669000000 reads.
Processed 670000000 reads.
Processed 671000000 reads.
Processed 672000000 reads.
Processed 673000000 reads.
Processed 674000000 reads.
Processed 675000000 reads.
Processed 676000000 reads.
Processed 677000000 reads.
Processed 678000000 reads.
Processed 679000000 reads.
Processed 680000000 reads.
Processed 681000000 reads.
Processed 682000000 reads.
Processed 683000000 reads.
Processed 684000000 reads.
Processed 685000000 reads.
Processed 686000000 reads.
Processed 687000000 reads.
Processed 688000000 reads.
Processed 689000000 reads.
Processed 690000000 reads.
Processed 691000000 reads.
Processed 692000000 reads.
Processed 693000000 reads.
Processed 694000000 reads.
Processed 695000000 reads.
Processed 696000000 reads.
Processed 697000000 reads.
Processed 698000000 reads.
Processed 699000000 reads.
Processed 700000000 reads.
Processed 701000000 reads.
Processed 702000000 reads.
Processed 703000000 reads.
Processed 704000000 reads.
Processed 705000000 reads.
Processed 706000000 reads.
Processed 707000000 reads.
Processed 708000000 reads.
Processed 709000000 reads.
Processed 710000000 reads.
Processed 711000000 reads.
Processed 712000000 reads.
Processed 713000000 reads.
Processed 714000000 reads.
Processed 715000000 reads.
Processed 716000000 reads.
Processed 717000000 reads.
Processed 718000000 reads.
Processed 719000000 reads.
Processed 720000000 reads.
Processed 721000000 reads.
Processed 722000000 reads.
Processed 723000000 reads.
Processed 724000000 reads.
Processed 725000000 reads.
Processed 726000000 reads.
Processed 727000000 reads.
Processed 728000000 reads.
Processed 729000000 reads.
Processed 730000000 reads.
Processed 731000000 reads.
Processed 732000000 reads.
Processed 733000000 reads.
Processed 734000000 reads.
Processed 735000000 reads.
Processed 736000000 reads.
Processed 737000000 reads.
Processed 738000000 reads.
Processed 739000000 reads.
Processed 740000000 reads.
Processed 741000000 reads.
Processed 742000000 reads.
Processed 743000000 reads.
Processed 744000000 reads.
Processed 745000000 reads.
Processed 746000000 reads.
Processed 747000000 reads.
Processed 748000000 reads.
Processed 749000000 reads.
Processed 750000000 reads.
Processed 751000000 reads.
Processed 752000000 reads.
Processed 753000000 reads.
Processed 754000000 reads.
Processed 755000000 reads.
Processed 756000000 reads.
Processed 757000000 reads.
Processed 758000000 reads.
Processed 759000000 reads.
Processed 760000000 reads.
Processed 761000000 reads.
Processed 762000000 reads.
Processed 763000000 reads.
Processed 764000000 reads.
Processed 765000000 reads.
Processed 766000000 reads.
Processed 767000000 reads.
Processed 768000000 reads.
Processed 769000000 reads.
Processed 770000000 reads.
Processed 771000000 reads.
Processed 772000000 reads.
Processed 773000000 reads.
Processed 774000000 reads.
Processed 775000000 reads.
Processed 776000000 reads.
Processed 777000000 reads.
Processed 778000000 reads.
Processed 779000000 reads.
Processed 780000000 reads.
Processed 781000000 reads.
Processed 782000000 reads.
Processed 783000000 reads.
Processed 784000000 reads.
Processed 785000000 reads.
Processed 786000000 reads.
Processed 787000000 reads.
Processed 788000000 reads.
Processed 789000000 reads.
Processed 790000000 reads.
Processed 791000000 reads.
Processed 792000000 reads.
Processed 793000000 reads.
Processed 794000000 reads.
Processed 795000000 reads.
Processed 796000000 reads.
Processed 797000000 reads.
Processed 798000000 reads.
Processed 799000000 reads.
Processed 800000000 reads.
Processed 801000000 reads.
Processed 802000000 reads.
Processed 803000000 reads.
Processed 804000000 reads.
Processed 805000000 reads.
Processed 806000000 reads.
Processed 807000000 reads.
Processed 808000000 reads.
Processed 809000000 reads.
Processed 810000000 reads.
Processed 811000000 reads.
Processed 812000000 reads.
Processed 813000000 reads.
Processed 814000000 reads.
Processed 815000000 reads.
Processed 816000000 reads.
Processed 817000000 reads.
Processed 818000000 reads.
Processed 819000000 reads.
Processed 820000000 reads.
Processed 821000000 reads.
Processed 822000000 reads.
Processed 823000000 reads.
Processed 824000000 reads.
Processed 825000000 reads.
Processed 826000000 reads.
Processed 827000000 reads.
Processed 828000000 reads.
Processed 829000000 reads.
Processed 830000000 reads.
Parsing input data is finished. 830946445 reads are processed. Time spent = 1703.00s.
IFNB_B3_adt.stat.csv.gz is written.
IFNB_B3_adt.csv is written.
IFNB_B3_adt.report.txt is written.
Outputs are written. Time spent = 401.00s.
Total time spent (not including destruct objects) = 2385.00s.
strato exists gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/060724_DP1_Batch_2_3_NS2000_Pool/FASTQs/IFNB_B3_adt/
strato sync -m gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/060724_DP1_Batch_2_3_NS2000_Pool/FASTQs/IFNB_B3_adt IFNB_B3_adt_0
strato exists gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/062124_DP1_Batch_2_3_NOVA/062724_fastqs/IFNB_B3_adt/
strato sync -m gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/062124_DP1_Batch_2_3_NOVA/062724_fastqs/IFNB_B3_adt IFNB_B3_adt_1
generate_count_matrix_ADTs /cromwell_root/regev-lab/resources/cellranger/3M-3pgex-may-2023.txt.gz /cromwell_root/fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/101723_NS2000_DP1/101723_NS2000_ADT_HTO.csv IFNB_B3_adt_0,IFNB_B3_adt_1 IFNB_B3_adt -p 4 --max-mismatch-feature 2 --feature antibody --max-mismatch-cell 1 --umi-length 10
gsutil -q -o GSUtil:parallel_composite_upload_threshold=150M -m cp IFNB_B3_adt.csv IFNB_B3_adt.stat.csv.gz IFNB_B3_adt.report.txt gs://fc-secure-5a278fa4-ea59-4086-be31-07b6d217ec5e/CITESeq-Sequencing/062124_DP1_Batch_2_3_NOVA/070324_cellranger_output/IFNB_B3_adt/