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slurm.yml
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# this is needed otherwise not all information will be available for creating the slurm config for the controller.
- hosts: galaxyserver, slurm
gather_facts: yes
- hosts: galaxyserver
become: true
vars_files:
- secret_group_vars/global.vault
- group_vars/global.yml
- group_vars/env.yml
- group_vars/galaxy.yml
- group_vars/slurm.yml
vars:
slurm_roles: ["controller", "dbd"]
nfs_mode: server
pre_tasks:
- name: Create users and groups
include: tasks/users_groups.yml
- name: Add galaxy paths for nfs export
become: true
file:
path: "{{ item }}"
state: directory
mode: "0750"
owner: "{{ galaxy_user.name }}"
group: "{{ galaxy_user.name }}"
with_items:
- "{{ galaxy_file_path }}"
- "{{ galaxy_root }}"
- name: make dir for slurm (should not be needed!)
file:
path: /etc/slurm/
state: directory
mode: "0755"
owner: root
group: root
- name: Open firewalld ports
tags: firewall-setup
become: true
include: tasks/firewall.yml ports="['ssh']"
- name: Slurm related tasks
include: tasks/slurm.yml
tasks:
roles:
- galaxyproject.repos
- galaxyproject.slurm
- indigo-dc.nfs
post_tasks:
- name: Install slurm-drmaa
package:
name: slurm-drmaa
- name: galaxy dependencies dir (?)
file:
path: "{{ galaxy_root }}/server/dependencies"
state: directory
mode: "0644"
owner: "{{ galaxy_user.name }}"
- name: slurmdbd permissions
file:
path: /etc/slurm/slurmdbd.conf
mode: "0600"
owner: slurm
group: root
- name: galaxy root is readable for nginx
file:
path: "{{ galaxy_root }}"
state: directory
mode: "0755"
owner: "{{ galaxy_user.name }}"
group: "{{ galaxy_user.name }}"
- hosts: slurm
become: true
vars_files:
- group_vars/global.yml
- secret_group_vars/global.vault
- group_vars/env.yml
- group_vars/slurm.yml
- group_vars/galaxy.yml
vars:
nfs_mode: client
pre_tasks:
- name: Create users and groups
include: tasks/users_groups.yml
- name: Slurm related tasks
include: tasks/slurm.yml
- name: Open firewalld ports
tags: firewall-setup
become: true
include: tasks/firewall.yml ports="['ssh']"
roles:
- role: geerlingguy.repo-epel
- galaxyproject.repos
- geerlingguy.docker
- indigo-dc.nfs
- galaxyproject.cvmfs
tasks:
- name: Install packages
package:
name:
- "python3"
- "git"
- "python36-virtualenv"
- "bzip2"
- "singularity"
- hosts: slurm
become: true
tags:
- testing
vars_files:
- group_vars/global.yml
- secret_group_vars/global.vault
- group_vars/env.yml
- group_vars/slurm.yml
- group_vars/galaxy.yml
vars:
slurm_roles: ["exec"]
roles:
- galaxyproject.slurm