wrapper for amrplusplus

[tothuhien]

This tool: https://github.com/cdeanj/amrplusplus
is a nextflow pipeline could be used in the IBA course if we call install it on usegalay.no. It has option to run with docker, but in theory could be run without docker by changing the nextflow.config file.
I still have problem of simply running the workflow.

[kjellp]

This can maybe be useful background:
nextflow-io/nextflow#3177

[tothuhien]

it seems that toolshed of NTNU is down. Where can I put the wrapper to test?

[kjetilkl]

I guess the best choice would be the official test-toolshed at https://testtoolshed.g2.bx.psu.edu. I have also temporarily moved the NeLS Tool Shed to our test server at https://test.usegalaxy.no/toolshed_nels, although that one is expected to be unstable. Of course, depending on where you are testing your tool, you could also copy the wrapper files directly to a Galaxy server and adding a line to one of the tool_config_files specified in the main galaxy.yml configuration file.

[tothuhien]

Thanks, I will look at those.