README.md

ansible-role-nels-galaxy-api

Ansible role for installing nels-galaxy-api (NGA).

NGA new versions are currently hosted at UiB GitLab https://git.app.uib.no/cbu-dev/nga. It was formerly hosted in GitHub. This version is obsolete.

NGA is included in https://github.com/usegalaxy-no/infrastructure-playbook/blob/master/env/common/requirements.yml:

- src: https://github.com/usegalaxy-no/ansible-role-nels-galaxy-api.git
  name: usegalaxy-no.nels-galaxy-api

Role Variables

Variables are defined in:

• infrastructure-playbook/env/{test,main}/group_vars/nga.yml
• infrastructure-playbook/env/{test,main}/secret_group_vars/global.vault
• defaults/main.yml

Dependencies

• usegalaxy infrastructure playbook: https://github.com/usegalaxy-no/infrastructure-playbook
• NGA: https://git.app.uib.no/cbu-dev/nga. Please note that previous NGA version hosted in GitHub is obsolete and must not be used anymore.
• ansible
• root access to the main nodes usegalaxy.no (test or prod)

Usage

1. Checkout the infrastucture-playbook
2. Follow the instructions https://usegalaxy-no.readthedocs.io/en/latest/deployment.html
3. The NGA role is included in the requirements.yml and will be installed by ansible-galaxy. Step is included in the infrastructure doc.
4. Go to the env folder (main or test) and run "ansible-playbook nga.yml" nga.yml checks out the NGA and installs it.

Example Playbook

nga.yml in env/test (or env/main for production infra)

- hosts: galaxyserver
  vars_files:
    - secret_group_vars/global.vault
    - group_vars/global.yml
    - group_vars/env.yml
    - group_vars/nga.yml
  become: true
  roles:
    - usegalaxy-no.nels-galaxy-api

License

BSD

Author Information

Elixir Norway/Bergen University