From e5f1e1793cad43da6624528d8cd976e2af5d5776 Mon Sep 17 00:00:00 2001
From: "UseGalaxy.EU Jenkins Bot" <jenkins@usegalaxy.eu>
Date: Sun, 24 Nov 2024 21:36:17 +0100
Subject: [PATCH] Autoupdate tool blog post

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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2024-11-24
+supporters:
+- denbi
+- elixir
+---
+
+On 2024-11-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #488](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#488/)
+
+
+## Get Data
+
+- copernicusmarine was updated to [c07f11d8e49a](https://toolshed.g2.bx.psu.edu/view/ecology/copernicusmarine/c07f11d8e49a)
+
+## Metagenomic Analysis
+
+- krakentools_alpha_diversity was updated to [78b69342c280](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_alpha_diversity/78b69342c280)
+- krakentools_beta_diversity was updated to [4505d7643673](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_beta_diversity/4505d7643673)
+- krakentools_combine_kreports was updated to [3d2cffa2c4ab](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_combine_kreports/3d2cffa2c4ab)
+- krakentools_extract_kraken_reads was updated to [4bf1e2701504](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_extract_kraken_reads/4bf1e2701504)
+- krakentools_kreport2krona was updated to [02bbace216f2](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2krona/02bbace216f2)
+- krakentools_kreport2mpa was updated to [d33cf727ed94](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2mpa/d33cf727ed94)
+- checkv_build_database was updated to [88042a5ead89](https://toolshed.g2.bx.psu.edu/view/ufz/checkv_build_database/88042a5ead89)
+
+## Data Managers
+
+- genomad_build_database was updated to [c4ec3d81eeee](https://toolshed.g2.bx.psu.edu/view/ufz/genomad_build_database/c4ec3d81eeee)
+- vibrant_build_database was updated to [3f68072f2da6](https://toolshed.g2.bx.psu.edu/view/ufz/vibrant_build_database/3f68072f2da6)
+- virsorter_build_database was updated to [863ba94fb6e4](https://toolshed.g2.bx.psu.edu/view/ufz/virsorter_build_database/863ba94fb6e4)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## fetch_sequences___alignments
+
+- extract_genomic_dna was updated to [80414c33a59a](https://toolshed.g2.bx.psu.edu/view/iuc/extract_genomic_dna/80414c33a59a)
+
+## Assembly
+
+- blobtoolkit was updated to [392811378515](https://toolshed.g2.bx.psu.edu/view/bgruening/blobtoolkit/392811378515)
+- abyss was updated to [db9b10824c61](https://toolshed.g2.bx.psu.edu/view/iuc/abyss/db9b10824c61)
+
+## Machine Learning
+
+- black_forest_labs_flux was updated to [21ee409e6cde](https://toolshed.g2.bx.psu.edu/view/bgruening/black_forest_labs_flux/21ee409e6cde)
+
+## Imaging
+
+- cp_cellprofiler4 was updated to [9799fc53433e](https://toolshed.g2.bx.psu.edu/view/bgruening/cp_cellprofiler4/9799fc53433e)
+
+## FASTA/FASTQ
+
+- bbtools_bbduk was updated to [d58c27d2c5a7](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/d58c27d2c5a7)
+- bbtools_bbmerge was updated to [1bb2b5b52030](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/1bb2b5b52030)
+- bbtools_tadpole was updated to [ce13b4678f18](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/ce13b4678f18)
+- ncbi_fcs_gx was updated to [32d058f3462a](https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_fcs_gx/32d058f3462a)
+
+## Gemini
+
+- gemini_annotate was updated to [8da05bf2b1d1](https://toolshed.g2.bx.psu.edu/view/iuc/gemini_annotate/8da05bf2b1d1)
+
+## Genome Diversity
+
+- fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96)
+
+## Mapping
+
+- bbtools_bbmap was updated to [8015d7ab8357](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/8015d7ab8357)
+
+## Multiple Alignments
+
+- trimal was updated to [e379c0202766](https://toolshed.g2.bx.psu.edu/view/iuc/trimal/e379c0202766)
+
+## Variant Calling
+
+- bbtools_callvariants was updated to [3854db061e6e](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/3854db061e6e)
+- ensembl_vep was updated to [c91e09b60325](https://toolshed.g2.bx.psu.edu/view/iuc/ensembl_vep/c91e09b60325)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+
+## RNA Analysis
+
+- infernal was updated to [3711f654044e](https://toolshed.g2.bx.psu.edu/view/bgruening/infernal/3711f654044e)
+