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<!DOCTYPE html>
<html lang="en">
<head>
<title>Galaxy Europe</title>
<meta property="og:title" content="" />
<meta property="og:description" content="" />
<meta property="og:image" content="/assets/media/galaxy-eu-logo.512.png" />
<meta name="description" content="The European Galaxy Instance">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<link rel="stylesheet" href="/assets/css/bootstrap.min.css">
<link rel="stylesheet" href="/assets/css/main.css">
<link rel="canonical" href="https://galaxyproject.eu/index-climate.html">
<link rel="shortcut icon" href="/assets/media/galaxy-eu-logo.64.png" type="image/x-icon" />
<link rel="alternate" type="application/rss+xml" title="Galaxy Europe" href="/feed.xml">
<link href="/assets/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN" crossorigin="anonymous">
<script src="/assets/js/jquery-3.2.1.slim.min.js" integrity="sha256-k2WSCIexGzOj3Euiig+TlR8gA0EmPjuc79OEeY5L45g=" crossorigin="anonymous"></script>
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</head>
<body>
<div id="wrap">
<div id="main">
<div class="container" id="maincontainer">
<div class="home">
<h1 id="welcome-to-the-climate-science-community">Welcome to the climate science community</h1>
<p><img src="/assets/media/Galaxy-climate-logo.png" height="100px" alt="Galaxy Climate" /></p>
<p class="no_toc">The Climate Science workbench is a comprehensive set of analysis tools and consolidated workflows.
The workbench is based on the <a href="https://galaxyproject.org" target="_blank">Galaxy framework</a>,
which guarantees simple access, easy extension, flexible adaption to personal and security needs,
and sophisticated analyses independent of command-line knowledge.</p>
<p>The current implementation comprises a few tools dedicated to different research areas of climate science. More tools are coming soon!</p>
<p>The list of tools is maintained by <a href="https://github.com/annefou">Anne</a>!!!</p>
<h1 class="no_toc" id="content">Content</h1>
<ol id="markdown-toc">
<li><a href="#welcome-to-the-climate-science-community" id="markdown-toc-welcome-to-the-climate-science-community">Welcome to the climate science community</a></li>
<li><a href="#get-started" id="markdown-toc-get-started">Get started</a></li>
<li><a href="#training" id="markdown-toc-training">Training</a></li>
<li><a href="#available-tools" id="markdown-toc-available-tools">Available tools</a> <ol>
<li><a href="#interactive-tools" id="markdown-toc-interactive-tools">Interactive tools</a></li>
<li><a href="#climate-analysis" id="markdown-toc-climate-analysis">Climate Analysis</a></li>
<li><a href="#gis-data-handling" id="markdown-toc-gis-data-handling">GIS data handling</a></li>
</ol>
</li>
<li><a href="#machine-learning-workbench" id="markdown-toc-machine-learning-workbench">Machine Learning Workbench</a></li>
<li><a href="#acknowledgments" id="markdown-toc-acknowledgments">Acknowledgments</a></li>
<li><a href="#citation" id="markdown-toc-citation">Citation</a></li>
</ol>
<h1 id="get-started">Get started</h1>
<p>Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take <a href="https://climate.usegalaxy.eu/tours/core.galaxy_ui" target="_blank">a guided tour</a> through Galaxy’s user interface.</p>
<h1 id="training">Training</h1>
<ul>
<li><a href="https://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-101-everyone/tutorial.html">Galaxy 101 for everyone</a></li>
<li><a href="https://training.galaxyproject.org/training-material/topics/climate/">Climate Galaxy Training</a></li>
</ul>
<p><strong>Want to learn more about Galaxy? Check out the following hands-on tutorials from <a href="https://galaxyproject.github.io/training-material/">the Galaxy Training Network</a>.</strong></p>
<p>We are passionate about training. So we are working in close collaboration with the <a href="https://galaxyproject.org/teach/gtn/" target="_blank">Galaxy Training Network (GTN)</a> to develop training materials of data analyses based on Galaxy <a class="citation" href="#batut2017community">(Batut <i>et al.</i>, 2017)</a>. These materials hosted on the GTN GitHub repository are available online at <a href="https://training.galaxyproject.org" target="_blank">https://training.galaxyproject.org</a>.</p>
<h1 id="available-tools">Available tools</h1>
<h2 id="interactive-tools">Interactive tools</h2>
<ul>
<li><a href="https://live.usegalaxy.eu/?tool_id=interactive_tool_panoply" target="_blank">Panoply netCDF viewer</a></li>
<li><a href="https://live.usegalaxy.eu/?tool_id=interactive_tool_climate_notebook" target="_blank">JupyterLab for Ocean / Atmosphere / Land / Climate Pangeo Python ecosystem</a> with:
<ul>
<li><a href="https://pangeo.io/">PANGEO python ecosystem</a>: PANGEO is a community platform for Big Data geoscience;</li>
<li><a href="http://www.cesm.ucar.edu/">Community Earth System Models (CESM) development & Training platform</a>: The Community Earth System Model (CESM) is a fully-coupled, global climate model that provides state-of-the-art computer simulations of the Earth’s past, present, and future climate states.</li>
<li><a href="https://www.esmvaltool.org/">ESMValTool</a>: a community diagnostic and performance metrics tool for routine evaluation of Earth system models in the <a href="https://www.wcrp-climate.org/wgcm-cmip">Coupled Model Intercomparison Project</a> (CMIP). The JupyterLab ESMValTool environment can be used for developing new diagnostic recipes and as a teaching platform.</li>
</ul>
</li>
</ul>
<h2 id="climate-analysis">Climate Analysis</h2>
<table class="table table-striped tooltable">
<thead>
<tr>
<th>Tool</th>
<th>Description</th>
<th>Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/climate/cds_essential_variability/cds_essential_variability" target="_top" title="cds_essential_variability">cds_essential_variability</a></td>
<td><a href="https://cds.climate.copernicus.eu/cdsapp#!/dataset/ecv-for-climate-change?tab=overview">Copernicus Essential climate variables for assessment of climate variability from 1979 to present</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/climate/shift_longitudes/shyft_longitudes" target="_top" title="shyft_longitudes">shyft_longitudes</a></td>
<td>Shift longitude range in netCDF data file from 0->360 to -180->180 degrees</td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/climate/psy_maps/psy_maps" target="_top" title="psy_maps">psy_maps</a></td>
<td>Visualization on a geographical map with psyplot</td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/climate/mean_per_zone/mean_per_zone" target="_top" title="mean_per_zone">mean_per_zone</a></td>
<td>Plot zonal statistics from a raster and shapefile on a geographical map</td>
<td>-</td>
</tr>
</tbody>
</table>
<h2 id="gis-data-handling">GIS data handling</h2>
<table class="table table-striped tooltable">
<thead>
<tr>
<th>Tool</th>
<th>Description</th>
<th>Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdalinfo/gdal_gdalinfo" target="_top" title="gdal_gdalinfo">gdal_gdalinfo</a></td>
<td><a href="https://gdal.org/programs/gdalinfo.html">Lists information about a raster dataset</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdaladdo/gdal_gdaladdo" target="_top" title="gdal_gdaladdo">gdal_gdaladdo</a></td>
<td><a href="https://gdal.org/programs/gdaladdo.html">Builds or rebuilds overview images</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdalbuildvrt/gdal_gdalbuildvrt" target="_top" title="gdal_gdalbuildvrt">gdal_gdalbuildvrt</a></td>
<td><a href="https://gdal.org/programs/gdalbuildvrt.html">Builds a VRT (Virtual Dataset) from a list of datasets</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdal_merge/gdal_gdal_merge" target="_top" title="gdal_gdal_merge">gdal_gdal_merge</a></td>
<td><a href="https://gdal.org/programs/gdal_merge.html">Mosaic a set of images</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdal_translate/gdal_gdal_translate" target="_top" title="gdal_gdal_translate">gdal_gdal_translate</a></td>
<td><a href="https://gdal.org/programs/gdal_translate.html">Convert raster data between different formats</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_gdalwarp/gdal_gdalwarp" target="_top" title="gdal_gdalwarp">gdal_gdalwarp</a></td>
<td><a href="https://gdal.org/programs/gdalwarp.html">Image reprojection and warping utility</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_ogr2ogr/gdal_ogr2ogr" target="_top" title="gdal_ogr2ogr">gdal_ogr2ogr</a></td>
<td><a href="https://gdal.org/programs/ogr2ogr.html">Converts simple features data between file formats</a></td>
<td>-</td>
</tr>
<tr>
<td><a href="https://climate.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_ogrinfo/gdal_ogrinfo" target="_top" title="gdal_ogrinfo">gdal_ogrinfo</a></td>
<td><a href="https://gdal.org/programs/ogrinfo.html">Lists information about an OGR-supported data source</a></td>
<td>-</td>
</tr>
</tbody>
</table>
<h1 id="machine-learning-workbench">Machine Learning Workbench</h1>
<p>For Machine Learning tools, use the <a href="https://ml.usegalaxy.eu/">Galaxy Machine Learning Workbench</a>. To have access to all your Galaxy histories and data, make sure to login with the same username and password than on the Climate Science Workbench.</p>
<h1 id="acknowledgments">Acknowledgments</h1>
<p>The authors would like to thank Bérénice Batut, Björn Grüning, Anup Kumar and @galaxyproject</p>
<h1 id="citation">Citation</h1>
<p>Please add the following when using the <a href="https://climate.usegalaxy.eu">climate.usegalaxy.eu</a> Galaxy portal:</p>
<p><em>The Galaxy server that was used for some calculations is in part funded by Collaborative Research Centre 992 Medical Epigenetics (DFG grant SFB 992/1 2012) and
German Federal Ministry of Education and Research (BMBF grants 031 A538A/A538C RBC, 031L0101B/031L0101C de.NBI-epi, 031L0106 de.STAIR (de.NBI)).</em></p>
<p>More information on <a href="https://galaxyproject.org/citing-galaxy/">how to cite Galaxy</a>.</p>
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