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Tests directory contains broken symlinks #38

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pvanheus opened this issue Nov 20, 2017 · 1 comment
Open

Tests directory contains broken symlinks #38

pvanheus opened this issue Nov 20, 2017 · 1 comment

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@pvanheus
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The test/scripts/data directory contains broken symlinks. These should be removed and if appropriate, a script should be provided to download test data.

@pvanheus
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The data in question is Neisseria_gonorrhoeae_NCCP11945.fasta which can be fetched from https://www.ebi.ac.uk/ena/data/view/CP001050&display=fasta and then 4 other files, R1.fastq.gz, R2.fastq.gz, reference.fa and target.vcf. These are listed as being at location /phengs/hpc_storage/software_test_launchpad/software_test_data/techdev/phoenix/end_to_end. If these are available they could be put somewhere where they could be downloaded as part of the testing procedure.

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