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update MOM6 to remove compiling warning #2197

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update MOM6 to remove compiling warning #2197

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jiandewang
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@jiandewang jiandewang commented Mar 19, 2024 •
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Commit Queue Requirements:

  • Fill out all sections of this template.
  • All sub component pull requests have been reviewed by their code managers.
  • Run the full Intel+GNU RT suite (compared to current baselines) on either Hera/Derecho/Hercules
  • Commit 'test_changes.list' from previous step

Description:

This updated MOM6 code will eliminate all compiling warning

Commit Message:

Please provide concise information for The UFS-WM and/or each sub-component:
Please delete what is not needed.

  • MOM6 - update MOM6 code to eliminate all compiling warning

Priority:

  • Normal

Git Tracking

UFSWM:

close #2196

Sub component Pull Requests:

MOM6 issue NOAA-EMC/MOM6#128
MOM6 PR NOAA-EMC/MOM6#130

UFSWM Blocking Dependencies:

  • None

Changes

  • No Baseline Changes.

Input data Changes:

  • None.

Library Changes/Upgrades:

  • No Updates

Testing Log:

  • RDHPCS
    • Hera
    • Orion
    • Hercules
    • Jet
    • Gaea
    • Derecho
  • WCOSS2
    • Dogwood/Cactus
    • Acorn
  • CI
  • opnReqTest (complete task if unnecessary)

@jiandewang
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@jkbk2004 this is a very simple PR so it can be combined with other PR

@jiandewang
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wcoss2 run log: https://www.emc.ncep.noaa.gov/gc_wmb/wd20xw/JD/RegressionTests_wcoss2.log
HERA run log: https://www.emc.ncep.noaa.gov/gc_wmb/wd20xw/JD/RegressionTests_hera.log

@jiandewang
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results from "grep warning err" contain no any MOM6 related stuff

grep warning err
/lfs/h2/emc/ptmp/jiande.wang/FV3_RT/rt_22400/compile_s2s_intel/build_fv3_s2s_intel/FV3/ccpp/physics/ccpp_FV3_GFS_v17_coupled_p8_stochastics_cap.F90(60): warning #5462: Global name too long, shortened from: ccpp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP to: pp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP
/lfs/h2/emc/ptmp/jiande.wang/FV3_RT/rt_22400/compile_s2s_intel/build_fv3_s2s_intel/FV3/ccpp/physics/ccpp_FV3_GFS_v17_coupled_p8_cap.F90(37): warning #5462: Global name too long, shortened from: ccpp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP to: pp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP
/lfs/h2/emc/ptmp/jiande.wang/FV3_RT/rt_22400/compile_s2s_intel/build_fv3_s2s_intel/FV3/ccpp/physics/ccpp_static_api.F90(42): warning #5462: Global name too long, shortened from: ccpp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP to: pp_fv3_gfs_v17_coupled_p8_stochastics_cap_mp_FV3_GFS_V17_COUPLED_P8_STOCHASTICS_TSFINAL_CAP
/var/tmp/pbs.121904511.cbqs01/ifortvHEhMY.i90: warning #6178: The return value of this FUNCTION has not been defined. [MY_POINTER]
/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: warning: libjpeg.so.62, needed by /apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/lib64/libjasper.so, may conflict with libjpeg.so.9

@zach1221
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Hi, @jiandewang , are you able to provide a commit message, in the template above, for your code changes in this PR?

@jiandewang
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Hi, @jiandewang , are you able to provide a commit message, in the template above, for your code changes in this PR?

just added that

@zach1221
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Hi, @jiandewang can you sync up your PR branch here?

@jiandewang
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Hi, @jiandewang can you sync up your PR branch here?

just sync-ed

@jkbk2004 jkbk2004 mentioned this pull request Mar 22, 2024
Merged
14 tasks
zach1221 pushed a commit that referenced this pull request Mar 27, 2024
@SamuelTrahanNOAA
regression test system bug fixes, eliminate MOM6 warnings (#2197), ad…
c54e986 
…d xr_cnvcld flag to FV3 (#2185) (#2202)

* UFSWM - atparse.bash: correctly handle input that doesn't end with an end-of-line character. Fix some bugs in Rocoto support and clean up rt.sh.
  * FV3 - namelist flag xr_cnvcld to control if suspended grid-mean convective cloud condensate should be included in cloud fraction and optical depth calculation in radiation in the GFS suite
    * ccpp - physics-level changes to implement new namelist variable
  * MOM6 - update MOM6 code to eliminate all compiler warnings
@jkbk2004
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merged with #2202

@jkbk2004 jkbk2004 closed this Mar 27, 2024
zhanglikate added a commit to zhanglikate/ufs-weather-model that referenced this pull request May 3, 2024
@zhanglikate
Squashed commit of the following:
2ce5436 
commit f234a3e
Author: Ufuk Turunçoğlu <[email protected]>
Date:   Tue Apr 30 11:35:25 2024 -0600

    Fix for land component model (ufs-community#2191)

    * UFSWM - fix fully coupled land component configuration
      * NOAHMP - get fixed information from surface file

commit 04bbc15
Author: jiandewang <[email protected]>
Date:   Thu Apr 25 14:52:00 2024 -0400

    update MOM6 to its main repo. 20240401 commit (ufs-community#2241)

    * UFSWM -
      * MOM6 - update MOM6 to its main repo. 20240401 commit (NCAR-candidate-20240319)

commit b6c576d
Author: Daniel Sarmiento <[email protected]>
Date:   Tue Apr 23 12:24:22 2024 -0400

    Merged global namelist (ufs-community#2173)

    * UFSWM - global_control.nml_IN has been added as the new regression test namelist template for all global regression tests. The namelist now uses pointers (i.e. @[abc]) for variables and default values have been added to the default_vars.sh script. A new section in default_vars.sh has been added (export_tiled) to account for tiled RTs that pulls the correct parameter files using the ATMRES variable.
    Regression tests have been modified to account for these changes. Tests that were not compatible with the GFSv17_p8 core have been disabled for now. They will be turned on as they are updated from GFSv16 to GFSv17.

commit 5d2ca19
Author: WenMeng-NOAA <[email protected]>
Date:   Fri Apr 19 13:59:12 2024 -0400

    Update upp submodule (ufs-community#2213)

    * UFSWM - Update inline post
      * FV3 - Update upp submodule for inline post

commit 47c0099
Author: Brian Curtis <[email protected]>
Date:   Wed Apr 17 15:59:48 2024 -0400

    Add bash linting to CI. Cleanup .sh scripts a bit. Address .sh bugs. Adds -v Verbose option. (ufs-community#2218)  Remove nowarn Intel compiler flag (ufs-community#2225)

    * UFSWM
    - Add bash linting to CI:
      - uses superlinter to check for consistent bash code writing
    - Cleans up .sh scripts to comply with superlinter
    - Cleans up .sh scripts to be more consistent, easier to read.
    - Add's -v verbose option if debugging outputs needed, otherwise simplifies rt.sh run echo's.
    - Addresses smaller bugs
      - quota/timeout search logic adjusted.
      - check for dirs existing (DISKNM, STMP, PTMP) before starting.
      - adjustments/cleanup to ecflow/rocoto sections
      - rt.sh will attempt to start ecflow, and only stop ecflow if it started from rt.sh.
      - fix for issue where run_dir will not delete properly.
    * FV3: Address compiler warnings
      * atmos_cubed_sphere: Address compiler warnings.

commit 4f32a4b
Author: Rick Grubin <[email protected]>
Date:   Mon Apr 15 07:21:08 2024 -0600

    Document ATMW / ATMAERO / HAFS WM configurations (ufs-community#2160)

    * UFSWM
      * doc/Userguide
        * source
          * conf.py
          * Configurations.rst
          * FAQ.rst
          * InputsOutputs.rst
          * Introduction.rst

commit ac4445d
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Apr 15 08:59:42 2024 -0400

    Bump idna from 3.6 to 3.7 in /doc/UsersGuide (ufs-community#2234)

    *doc/UserGuide
       *requirements.txt - updates inda version from 3.6 to 3.7

commit 281b32f
Author: Samuel Trahan (NOAA contractor) <[email protected]>
Date:   Mon Apr 15 08:38:01 2024 -0400

    bug fixes: kchunk3d ignored, hailwat uninitialized in dycore, tile_num wrong for nests (ufs-community#2201)

    * UFSWM - None.
      * FV3 - Write component will use kchunk3d. Model init sends the right tile number to CCPP.
        * atmos_cubed_sphere - Initialize the hailwat variable. Pass global_tile index to model.

commit 8a5f711
Author: Denise Worthen <[email protected]>
Date:   Thu Apr 11 13:32:26 2024 -0400

    Add PIO namelist control for CICE (ufs-community#2145)

    Update to CICE-Consortium/CICE aca8357. Adds implementation of namelist PIO options for CICE

commit 45c8b2a
Author: JONG KIM <[email protected]>
Date:   Thu Apr 4 19:49:13 2024 -0400

    Hotfix/cubed sphere hash fix: HAILCAST diagnostic code (units issue) (ufs-community#2223)

    cubed_sphere hash update: f060e85 for a bug- fix in the HAILCAST diagnostic code (units issue)

commit 26e6db6
Author: Denise Worthen <[email protected]>
Date:   Wed Apr 3 19:57:08 2024 -0400

    Enable cpl_scalars export from ATM and NoahMP for use by CMEPS (ufs-community#2175)

      * CMEPS - allow additional dimension in cpl_scalars for CSG and regional ATM domains for use in mediator history files
      * CMEPS - fix mapping mask for lnd->atm
      * FV3 - add export of cpl_scalars
      * NOAHMP - add export of cpl_scalars

commit 1411b90
Author: Dusan Jovic <[email protected]>
Date:   Mon Apr 1 18:04:44 2024 -0400

    Update module_write_netcdf to avoid hangs in RRFS runs (ufs-community#2193)

    * UFSWM - Update module_write_netcdf to avoid hangs in RRFS runs
      * FV3 - Update module_write_netcdf to avoid hangs in RRFS runs

commit 87c27b9
Author: Matthew Masarik <[email protected]>
Date:   Fri Mar 29 15:23:42 2024 -0400

    WW3 feature:  Langmuir turbulence parameterization (ufs-community#2195)

      * WW3 - Langmuir turbulence parameterization

commit c54e986
Author: Samuel Trahan (NOAA contractor) <[email protected]>
Date:   Wed Mar 27 16:11:03 2024 -0400

    regression test system bug fixes, eliminate MOM6 warnings (ufs-community#2197), add xr_cnvcld flag to FV3 (ufs-community#2185) (ufs-community#2202)

    * UFSWM - atparse.bash: correctly handle input that doesn't end with an end-of-line character. Fix some bugs in Rocoto support and clean up rt.sh.
      * FV3 - namelist flag xr_cnvcld to control if suspended grid-mean convective cloud condensate should be included in cloud fraction and optical depth calculation in radiation in the GFS suite
        * ccpp - physics-level changes to implement new namelist variable
      * MOM6 - update MOM6 code to eliminate all compiler warnings
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update MOM6 to eliminate compiling warning
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@jiandewang @zach1221 @jkbk2004