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Updated 1. Data sources and definitions (markdown)
Updated Home (markdown)
Updated 2. Plots (markdown)
change links from zadyson to typhoidgenomics
Updated 3. Downloads (markdown)
Updated 3. Downloading data, plots and reports (markdown)
typo
Destroyed 4.4 Genotype distribution plot (markdown)
Destroyed 4.3 Resistance determinants within genotypes plot (markdown)
Destroyed 4.2 Drug resistance trends plot (markdown)
Destroyed 4.1 Resistance frequencies within genotypes plot (markdown)
update headings and TOC
add geno distributions
update res dets within genotypes
add TOC
add trends
add res freqs within genotypes
change to section 3
add country plots
Destroyed 4. Country level view (markdown)
update links
Destroyed 3. Filtering data (markdown)
add link to travel definitions
link to definitions
update threshold definitions