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setup.py
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setup.py
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"""
pygslib: GSLIB in python
Copyright 2020, Adrian Martinez Vargas.
Licensed under MIT.
"""
import setuptools #required to build wheels
import sys
import os
# get version from package
exec(open('pygslib/version.py').read())
version = __version__
description = 'Python module for mineral resource estimation and geostatistics'
name='pygslib'
long_description=open("README.md").read()
classifiers=[
'Development Status :: 7 - Alpha',
'Programming Language :: Python',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License and GPL',
'Topic :: Scientific/Engineering :: Mathematics',
'Topic :: Scientific/Engineering :: GIS']
keywords='geostatistics kriging variogram estimation simulation blockmodel drillhole wireframe'
author='Adrian Martinez Vargas'
author_email='[email protected]'
url='https://github.com/opengeostat/pygslib'
# hard code no worning error
extra_compile_args = [] #["-Wno-error"]
if __name__ == '__main__':
#FORTRAN code extension
#-------------------------------------------------------------------
#make sure you use the setup from numpy
from numpy.distutils.core import setup # this is numpy's setup
from numpy.distutils.core import Extension
#from numpy import get_include
from Cython.Build import cythonize
# these are the almost intact gslib code
gslib_kt3d = Extension(name = 'pygslib.gslib.__gslib__kt3d',
extra_compile_args=extra_compile_args,
sources = ['for_code/kt3d/kt3d.f90',
'for_code/kt3d/gslib/setrot.f90',
'for_code/kt3d/gslib/getindx.f90',
'for_code/kt3d/gslib/picksupr.f90',
'for_code/kt3d/gslib/setsupr.f90',
'for_code/kt3d/gslib/sqdist.f90',
'for_code/kt3d/gslib/cova3.f90',
'for_code/kt3d/gslib/ktsol.f90',
'for_code/kt3d/gslib/sortem.f90',
'for_code/kt3d/gslib/srchsupr.f90'],
f2py_options=[ 'only:', 'pykt3d', 'set_unest', ':'])
gslib_postik = Extension(name = 'pygslib.gslib.__gslib__postik',
extra_compile_args=extra_compile_args,
sources = ['for_code/postik/postik.f90',
'for_code/postik/gslib/beyond.f90',
'for_code/postik/gslib/locate.f90',
'for_code/postik/gslib/powint.f90',
'for_code/postik/gslib/sortem.f90'],
f2py_options=[ 'only:', 'postik', 'set_unest', 'get_unest', ':'])
# this is the gslib code too modified
# define extensions here:
#-----------------------------------------------------
gslib_rotscale = Extension(name = 'pygslib.gslib.__rotscale',
extra_compile_args=extra_compile_args,
sources = ['for_code/rotscale.f90'])
gslib_block_covariance = Extension(name = 'pygslib.gslib.__block_covariance',
extra_compile_args=extra_compile_args,
sources = ['for_code/block_covariance.f90'] )
gslib_read_gslib = Extension(name = 'pygslib.gslib.__read_gslib',
extra_compile_args=extra_compile_args,
sources = ['for_code/read_gslib.f90'] )
gslib_addcoord = Extension(name = 'pygslib.gslib.__addcoord',
extra_compile_args=extra_compile_args,
sources = ['for_code/addcoord.f90'] )
gslib_general = Extension(name = 'pygslib.gslib.__general',
extra_compile_args=extra_compile_args,
sources = ['for_code/general.f90'] )
gslib_plot = Extension(name = 'pygslib.gslib.__plot',
extra_compile_args=extra_compile_args,
sources = ['for_code/plot.f90'] )
gslib_declus = Extension(name = 'pygslib.gslib.__declus',
extra_compile_args=extra_compile_args,
sources = ['for_code/declus.f90'] )
gslib_dist_transf = Extension(name = 'pygslib.gslib.__dist_transf',
extra_compile_args=extra_compile_args,
sources = ['for_code/dist_transf.f90'],
f2py_options=[ 'only:', 'backtr', 'anatbl',
'nscore', 'ns_ttable', ':'] )
gslib_variograms = Extension(name = 'pygslib.gslib.__variograms',
extra_compile_args=extra_compile_args,
sources = ['for_code/variograms.f90'] ) # extra_link_args=['-fbacktrace', '-fcheck=all']
gslib_bigaus = Extension(name = 'pygslib.gslib.__bigaus',
extra_compile_args=extra_compile_args,
sources = ['for_code/bigaus.f90'] )
gslib_bicalib = Extension(name = 'pygslib.gslib.__bicalib',
extra_compile_args=extra_compile_args,
sources = ['for_code/bicalib.f90'] )
gslib_trans = Extension(name = 'pygslib.gslib.__trans',
extra_compile_args=extra_compile_args,
sources = ['for_code/trans.f90'] )
gslib_draw = Extension(name = 'pygslib.gslib.__draw',
extra_compile_args=extra_compile_args,
sources = ['for_code/draw.f90'] )
gslib_dm2csv = Extension(name = 'pygslib.gslib.__dm2csv',
extra_compile_args=extra_compile_args,
sources = ['for_code/dm2csv.f90'] )
# Cython
drillhole = Extension(name ='pygslib.drillhole',
extra_compile_args=extra_compile_args,
sources =['cython_code/drillhole.pyx'])
blockmodel= Extension(name ='pygslib.blockmodel',
extra_compile_args=extra_compile_args,
sources =['cython_code/blockmodel.pyx'])
vtktools= Extension(name ='pygslib.vtktools',
extra_compile_args=extra_compile_args,
sources =['cython_code/vtktools.pyx'])
nonlinear= Extension(name ='pygslib.nonlinear',
extra_compile_args=extra_compile_args,
sources =['cython_code/nonlinear.pyx'])
sandbox= Extension(name ='pygslib.sandbox',
extra_compile_args=extra_compile_args,
sources =['cython_code/sandbox.pyx'])
#pure python
progress= Extension(name ='pygslib.progress',sources =['pygslib/progress.py'])
surpac= Extension(name ='pygslib.surpac',sources =['pygslib/surpac.py'])
# All extensions Fortran + Cython
extensions =[gslib_variograms,
gslib_bigaus,
gslib_bicalib,
gslib_trans,
gslib_draw,
gslib_dm2csv,
gslib_addcoord,
gslib_rotscale,
gslib_read_gslib,
gslib_declus,
gslib_dist_transf,
gslib_block_covariance,
gslib_plot,
gslib_kt3d,
gslib_postik,
gslib_general,
drillhole,
blockmodel,
vtktools,
nonlinear,
sandbox,
progress,
surpac]
extensions = cythonize(extensions, gdb_debug=False)
setup(name=name,
version=version,
description= description,
long_description=long_description,
classifiers=classifiers,
keywords=keywords,
author=author,
author_email=author_email,
url=url,
license='GPL and MIT',
zip_safe=False,
setup_requires = ['cython',
'numpy',
'setuptools',
],
install_requires = ['ipython',
'matplotlib',
'jupyter',
'vtk>=8.0',
'bokeh',
'colour',
'numpy>=0.19',
'scipy',
'pandas'
],
tests_require=['pytest'],
packages=['pygslib',
'pygslib.gslib',
'pygslib.plothtml',
'pygslib.charttable'],
include_package_data=True,
package_data={'pygslib': ['data/*.*']},
ext_modules = extensions)
# copy dll if so is windows
if os.name=='nt':
mayor = sys.version_info[0]
minor = sys.version_info[1]
os.system('copy build\\lib.win-amd64-{}.{}\\pygslib\\.libs\\*.dll build\\lib.win-amd64-{}.{}\\pygslib\\gslib'.format(mayor,minor,mayor,minor))
os.system('del /s /q build\\lib.win-amd64-{}.{}\\pygslib\\.libs'.format(mayor,minor))
# running tests
os.system('pytest --doctest-modules -v tests/') #pytest style tests
print (" OPENGEOSTAT SAYS CYTHON/FORTRAN CODE COMPILED")