From cb64ab14fa93bc9ed96e40e32977a67e3fa86620 Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Sun, 23 Jun 2024 00:36:34 +0200 Subject: [PATCH 01/12] chore: add vanilla docker config --- .dockerignore | 16 ++++++++++++++++ Dockerfile | 1 - Dockerfile-vanilla | 30 +++++++++++++++++++++++++++++ docker-compose-vanilla.yml | 39 ++++++++++++++++++++++++++++++++++++++ docker-compose.yml | 4 +--- entrypoint-vanilla.sh | 18 ++++++++++++++++++ poetry.lock | 5 ++--- pyproject.toml | 6 ++---- 8 files changed, 108 insertions(+), 11 deletions(-) create mode 100644 .dockerignore create mode 100644 Dockerfile-vanilla create mode 100644 docker-compose-vanilla.yml create mode 100755 entrypoint-vanilla.sh diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 000000000..d2d26277f --- /dev/null +++ b/.dockerignore @@ -0,0 +1,16 @@ +bin +dist +docs +evals +tests +tools +assets +notebooks +cognee-frontend + +.dlt +.venv +.github + +.idea +.vscode diff --git a/Dockerfile b/Dockerfile index f8c3adfed..49ae2e45d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -26,7 +26,6 @@ RUN apt-get update -q && \ curl \ zip \ jq \ -# libgl1-mesa-glx \ netcat-traditional && \ pip install poetry && \ curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \ diff --git a/Dockerfile-vanilla b/Dockerfile-vanilla new file mode 100644 index 000000000..30a2019dc --- /dev/null +++ b/Dockerfile-vanilla @@ -0,0 +1,30 @@ +FROM python:3.11-slim + +# Set build argument +ARG DEBUG + +# Set environment variable based on the build argument +ENV DEBUG=${DEBUG} +ENV PIP_NO_CACHE_DIR=true +ENV PATH="${PATH}:/root/.poetry/bin" + +WORKDIR /app +COPY pyproject.toml poetry.lock /app/ + +RUN pip install poetry + +# Create virtualenv +RUN poetry config virtualenvs.create false + +# Install the dependencies +RUN poetry install --no-root --no-dev + +# Set the PYTHONPATH environment variable to include the /app directory +ENV PYTHONPATH=/app + +COPY cognee/ /app/cognee + +COPY entrypoint-vanilla.sh /app/entrypoint-vanilla.sh +RUN chmod +x /app/entrypoint-vanilla.sh + +ENTRYPOINT ["/app/entrypoint-vanilla.sh"] diff --git a/docker-compose-vanilla.yml b/docker-compose-vanilla.yml new file mode 100644 index 000000000..7a79e622b --- /dev/null +++ b/docker-compose-vanilla.yml @@ -0,0 +1,39 @@ +services: + cognee: + container_name: cognee + networks: + - cognee-network + build: + context: . + dockerfile: Dockerfile-vanilla + volumes: + - .:/app + - /app/cognee-frontend/ + environment: + - HOST=0.0.0.0 + - ENVIRONMENT=local + - PYTHONPATH=. + ports: + - 8000:8000 + - 5678:5678 # Debugging + deploy: + resources: + limits: + cpus: "4.0" + memory: 8GB + + frontend: + container_name: frontend + build: + context: ./cognee-frontend + dockerfile: Dockerfile + volumes: + - "./cognee-frontend:/app" + ports: + - "3000:3000" + networks: + - cognee-network + +networks: + cognee-network: + name: cognee-network diff --git a/docker-compose.yml b/docker-compose.yml index 4ba2227a8..d706d0316 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -26,14 +26,12 @@ services: - HOST=0.0.0.0 - ENVIRONMENT=local - PYTHONPATH=. - profiles: ["exclude-from-up"] ports: - 8000:8000 - 443:443 - 80:80 - 50051:50051 - - 5678:5678 -# - 5432:5432 + - 5678:5678 # Debugging depends_on: - postgres - neo4j diff --git a/entrypoint-vanilla.sh b/entrypoint-vanilla.sh new file mode 100755 index 000000000..ed8b4780a --- /dev/null +++ b/entrypoint-vanilla.sh @@ -0,0 +1,18 @@ +#!/bin/bash + +echo "Debug mode: $DEBUG" +echo "Environment: $ENVIRONMENT" + +echo "Starting Gunicorn" + +if [ "$ENVIRONMENT" = "local" ]; then + if [ "$DEBUG" = true ]; then + echo "Waiting for the debugger to attach..." + + python -m debugpy --wait-for-client --listen 0.0.0.0:5678 -m gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app + else + gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app + fi +else + gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level error cognee.api.client:app +fi diff --git a/poetry.lock b/poetry.lock index 92bf8830f..dd4f35d25 100644 --- a/poetry.lock +++ b/poetry.lock @@ -8314,14 +8314,13 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", cli = [] duckdb = ["duckdb"] filesystem = [] -motherduck = ["duckdb", "pyarrow"] +motherduck = ["duckdb"] neo4j = ["neo4j"] notebook = ["overrides"] -parquet = ["pyarrow"] qdrant = ["qdrant-client"] weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = ">=3.9.0,<3.12" -content-hash = "0d47b955224bb4f7d52815e63d15b2230dcff86f91a4f79b5533c299f965018b" +content-hash = "3e894bd32ee1d47a344ad4325731c064271b687b1f6af3c820436dc27f9d06a1" diff --git a/pyproject.toml b/pyproject.toml index 0b47a792d..ce4f2088d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30,7 +30,7 @@ sqlalchemy = "^2.0.21" instructor = "1.2.1" networkx = "^3.2.1" debugpy = "^1.8.0" -pyarrow = "^15.0.0" +pyarrow = "15.0.0" pylint = "^3.0.3" aiosqlite = "^0.20.0" pandas = "2.0.3" @@ -75,12 +75,10 @@ anthropic = "^0.26.1" langchain-text-splitters = "^0.2.1" - [tool.poetry.extras] -parquet = ["pyarrow"] duckdb = ["duckdb"] filesystem = ["s3fs", "botocore"] -motherduck = ["duckdb", "pyarrow"] +motherduck = ["duckdb"] cli = ["pipdeptree", "cron-descriptor"] weaviate = ["weaviate-client"] qdrant = ["qdrant-client"] From e23faccb6a479faf7c52899bad3a177861791db3 Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Sun, 23 Jun 2024 13:24:58 +0200 Subject: [PATCH 02/12] fix: run frontend in a container --- Dockerfile | 37 ++++------------ Dockerfile-old | 49 +++++++++++++++++++++ Dockerfile-vanilla | 30 ------------- cognee-frontend/.dockerignore | 2 + cognee-frontend/Dockerfile | 16 +++---- docker-compose-vanilla.yml | 14 +++--- docker-compose.yml | 80 ++++++++++++++--------------------- entrypoint-old.sh | 35 +++++++++++++++ entrypoint-vanilla.sh | 18 -------- entrypoint.sh | 35 ++++----------- 10 files changed, 151 insertions(+), 165 deletions(-) create mode 100644 Dockerfile-old delete mode 100644 Dockerfile-vanilla create mode 100644 cognee-frontend/.dockerignore create mode 100755 entrypoint-old.sh delete mode 100755 entrypoint-vanilla.sh diff --git a/Dockerfile b/Dockerfile index 49ae2e45d..148df0dfe 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,50 +1,29 @@ -FROM python:3.11 +FROM python:3.11-slim # Set build argument ARG DEBUG -ARG API_ENABLED # Set environment variable based on the build argument ENV DEBUG=${DEBUG} -ENV API_ENABLED=${API_ENABLED} ENV PIP_NO_CACHE_DIR=true ENV PATH="${PATH}:/root/.poetry/bin" -RUN pip install poetry - WORKDIR /app COPY pyproject.toml poetry.lock /app/ -# Install the dependencies -RUN poetry config virtualenvs.create false && \ - poetry install --no-root --no-dev - -RUN apt-get update -q && \ - apt-get install -y -q \ - gcc \ - python3-dev \ - curl \ - zip \ - jq \ - netcat-traditional && \ - pip install poetry && \ - curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \ - unzip -qq awscliv2.zip && \ - ./aws/install && \ - apt-get clean && \ - rm -rf \ - awscliv2.zip \ - /var/lib/apt/lists/* \ - /tmp/* \ - /var/tmp/* +RUN pip install poetry -WORKDIR /app +# Create virtualenv +RUN poetry config virtualenvs.create false + +# Install the dependencies +RUN poetry install --no-root --no-dev + # Set the PYTHONPATH environment variable to include the /app directory ENV PYTHONPATH=/app COPY cognee/ /app/cognee - COPY entrypoint.sh /app/entrypoint.sh RUN chmod +x /app/entrypoint.sh diff --git a/Dockerfile-old b/Dockerfile-old new file mode 100644 index 000000000..5913ac543 --- /dev/null +++ b/Dockerfile-old @@ -0,0 +1,49 @@ +FROM python:3.11 + +# Set build argument +ARG DEBUG + +# Set environment variable based on the build argument +ENV DEBUG=${DEBUG} +ENV PIP_NO_CACHE_DIR=true +ENV PATH="${PATH}:/root/.poetry/bin" + +RUN pip install poetry + +WORKDIR /app +COPY pyproject.toml poetry.lock /app/ + +# Install the dependencies +RUN poetry config virtualenvs.create false && \ + poetry install --no-root --no-dev + +RUN apt-get update -q && \ + apt-get install -y -q \ + gcc \ + python3-dev \ + curl \ + zip \ + jq \ + netcat-traditional && \ + pip install poetry && \ + curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \ + unzip -qq awscliv2.zip && \ + ./aws/install && \ + apt-get clean && \ + rm -rf \ + awscliv2.zip \ + /var/lib/apt/lists/* \ + /tmp/* \ + /var/tmp/* + +WORKDIR /app +# Set the PYTHONPATH environment variable to include the /app directory +ENV PYTHONPATH=/app + +COPY cognee/ /app/cognee + + +COPY entrypoint.sh /app/entrypoint.sh +RUN chmod +x /app/entrypoint.sh + +ENTRYPOINT ["/app/entrypoint.sh"] diff --git a/Dockerfile-vanilla b/Dockerfile-vanilla deleted file mode 100644 index 30a2019dc..000000000 --- a/Dockerfile-vanilla +++ /dev/null @@ -1,30 +0,0 @@ -FROM python:3.11-slim - -# Set build argument -ARG DEBUG - -# Set environment variable based on the build argument -ENV DEBUG=${DEBUG} -ENV PIP_NO_CACHE_DIR=true -ENV PATH="${PATH}:/root/.poetry/bin" - -WORKDIR /app -COPY pyproject.toml poetry.lock /app/ - -RUN pip install poetry - -# Create virtualenv -RUN poetry config virtualenvs.create false - -# Install the dependencies -RUN poetry install --no-root --no-dev - -# Set the PYTHONPATH environment variable to include the /app directory -ENV PYTHONPATH=/app - -COPY cognee/ /app/cognee - -COPY entrypoint-vanilla.sh /app/entrypoint-vanilla.sh -RUN chmod +x /app/entrypoint-vanilla.sh - -ENTRYPOINT ["/app/entrypoint-vanilla.sh"] diff --git a/cognee-frontend/.dockerignore b/cognee-frontend/.dockerignore new file mode 100644 index 000000000..f74c78183 --- /dev/null +++ b/cognee-frontend/.dockerignore @@ -0,0 +1,2 @@ +.next +node_modules diff --git a/cognee-frontend/Dockerfile b/cognee-frontend/Dockerfile index 0a3775dc8..26f479f88 100644 --- a/cognee-frontend/Dockerfile +++ b/cognee-frontend/Dockerfile @@ -1,20 +1,20 @@ # Use an official Node.js runtime as a parent image -FROM node:18.17.0 +FROM node:18-alpine # Set the working directory to /app WORKDIR /app # Copy package.json and package-lock.json to the working directory -COPY package*.json ./ +COPY package.json package-lock.json ./ # Install any needed packages specified in package.json -RUN npm install +RUN npm ci # Copy the rest of the application code to the working directory -COPY . . - -# Make port 3000 available to the world outside this container -EXPOSE 3000 +COPY src ./src +COPY public ./public +COPY next.config.mjs . +COPY tsconfig.json . # Build the app and run it -CMD ["sh", "-c", "npm run dev"] +CMD npm run dev diff --git a/docker-compose-vanilla.yml b/docker-compose-vanilla.yml index 7a79e622b..07bae272d 100644 --- a/docker-compose-vanilla.yml +++ b/docker-compose-vanilla.yml @@ -5,21 +5,21 @@ services: - cognee-network build: context: . - dockerfile: Dockerfile-vanilla + dockerfile: Dockerfile volumes: - .:/app - - /app/cognee-frontend/ + - /app/cognee-frontend/ # Ignore frontend code environment: - HOST=0.0.0.0 - ENVIRONMENT=local - PYTHONPATH=. ports: - 8000:8000 - - 5678:5678 # Debugging + # - 5678:5678 # Debugging deploy: resources: limits: - cpus: "4.0" + cpus: 4.0 memory: 8GB frontend: @@ -28,9 +28,11 @@ services: context: ./cognee-frontend dockerfile: Dockerfile volumes: - - "./cognee-frontend:/app" + - ./cognee-frontend/src:/app/src + - ./cognee-frontend/public:/app/public ports: - - "3000:3000" + - 3000:3000 + # - 9229:9229 # Debugging networks: - cognee-network diff --git a/docker-compose.yml b/docker-compose.yml index d706d0316..a23630091 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,45 +1,25 @@ -version: "3.9" - services: - neo4j: - image: neo4j:latest - container_name: neo4j - ports: - - "7474:7474" - - "7687:7687" - environment: - - NEO4J_AUTH=neo4j/pleaseletmein - - NEO4J_PLUGINS=["apoc"] - networks: - - cognee_backend - cognee: container_name: cognee networks: - - cognee_backend + - cognee-network build: - context: ./ + context: . + dockerfile: Dockerfile volumes: - - "./:/app" - - ./.data:/app/.data + - .:/app + - /app/cognee-frontend/ # Ignore frontend code environment: - HOST=0.0.0.0 - ENVIRONMENT=local - PYTHONPATH=. ports: - 8000:8000 - - 443:443 - - 80:80 - - 50051:50051 - - 5678:5678 # Debugging - depends_on: - - postgres - - neo4j - - frontend + # - 5678:5678 # Debugging deploy: resources: limits: - cpus: "4.0" + cpus: 4.0 memory: 8GB frontend: @@ -48,36 +28,40 @@ services: context: ./cognee-frontend dockerfile: Dockerfile volumes: - - "./cognee-frontend:/app" + - ./cognee-frontend/src:/app/src + - ./cognee-frontend/public:/app/public ports: - - "3000:3000" + - 3000:3000 + # - 9229:9229 # Debugging networks: - - cognee_backend - - postgres: - image: postgres - container_name: postgres - environment: - - POSTGRES_HOST_AUTH_METHOD=trust - - POSTGRES_USER=bla - - POSTGRES_PASSWORD=bla - - POSTGRES_DB=bubu + - cognee-network - networks: - - cognee_backend - ports: - - "5432:5432" + neo4j: + image: neo4j:latest + container_name: neo4j + profiles: + - neo4j + ports: + - 7474:7474 + - 7687:7687 + environment: + - NEO4J_AUTH=neo4j/pleaseletmein + - NEO4J_PLUGINS=["apoc"] + networks: + - cognee-network falkordb: image: falkordb/falkordb:edge container_name: falkordb + profiles: + - falkordb ports: - - "6379:6379" - - "3001:3000" + - 6379:6379 + - 3001:3000 networks: - - cognee_backend + - cognee-network networks: - cognee_backend: - name: cognee_backend + cognee-network: + name: cognee-network diff --git a/entrypoint-old.sh b/entrypoint-old.sh new file mode 100755 index 000000000..8d8053759 --- /dev/null +++ b/entrypoint-old.sh @@ -0,0 +1,35 @@ +#!/bin/bash +# export ENVIRONMENT + +echo "Debug mode: $DEBUG" +echo "Environment: $ENVIRONMENT" + +if [ "$ENVIRONMENT" != "local" ]; then + echo "Running fetch_secret.py" + + PYTHONPATH=. python cognee/fetch_secret.py + + if [ $? -ne 0 ]; then + echo "Error: fetch_secret.py failed" + exit 1 + fi +else + echo '"local" environment is active, skipping fetch_secret.py' +fi + +echo "Creating database..." +# +#PYTHONPATH=. python cognee/setup_database.py +#if [ $? -ne 0 ]; then +# echo "Error: setup_database.py failed" +# exit 1 +#fi + +echo "Starting Gunicorn" + +if [ "$DEBUG" = true ]; then + echo "Waiting for the debugger to attach..." + python -m debugpy --wait-for-client --listen 0.0.0.0:5678 -m gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --bind=0.0.0.0:443 --log-level debug cognee.api.client:app +else + gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --bind=0.0.0.0:443 --log-level debug cognee.api.client:app +fi diff --git a/entrypoint-vanilla.sh b/entrypoint-vanilla.sh deleted file mode 100755 index ed8b4780a..000000000 --- a/entrypoint-vanilla.sh +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash - -echo "Debug mode: $DEBUG" -echo "Environment: $ENVIRONMENT" - -echo "Starting Gunicorn" - -if [ "$ENVIRONMENT" = "local" ]; then - if [ "$DEBUG" = true ]; then - echo "Waiting for the debugger to attach..." - - python -m debugpy --wait-for-client --listen 0.0.0.0:5678 -m gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app - else - gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app - fi -else - gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level error cognee.api.client:app -fi diff --git a/entrypoint.sh b/entrypoint.sh index 8d8053759..ed8b4780a 100755 --- a/entrypoint.sh +++ b/entrypoint.sh @@ -1,35 +1,18 @@ #!/bin/bash -# export ENVIRONMENT echo "Debug mode: $DEBUG" echo "Environment: $ENVIRONMENT" -if [ "$ENVIRONMENT" != "local" ]; then - echo "Running fetch_secret.py" - - PYTHONPATH=. python cognee/fetch_secret.py - - if [ $? -ne 0 ]; then - echo "Error: fetch_secret.py failed" - exit 1 - fi -else - echo '"local" environment is active, skipping fetch_secret.py' -fi - -echo "Creating database..." -# -#PYTHONPATH=. python cognee/setup_database.py -#if [ $? -ne 0 ]; then -# echo "Error: setup_database.py failed" -# exit 1 -#fi - echo "Starting Gunicorn" -if [ "$DEBUG" = true ]; then - echo "Waiting for the debugger to attach..." - python -m debugpy --wait-for-client --listen 0.0.0.0:5678 -m gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --bind=0.0.0.0:443 --log-level debug cognee.api.client:app +if [ "$ENVIRONMENT" = "local" ]; then + if [ "$DEBUG" = true ]; then + echo "Waiting for the debugger to attach..." + + python -m debugpy --wait-for-client --listen 0.0.0.0:5678 -m gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app + else + gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level debug --reload cognee.api.client:app + fi else - gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --bind=0.0.0.0:443 --log-level debug cognee.api.client:app + gunicorn -w 3 -k uvicorn.workers.UvicornWorker -t 30000 --bind=0.0.0.0:8000 --log-level error cognee.api.client:app fi From 9ee2da2ccd89e215621bcfc134126c1340c837d3 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Sun, 23 Jun 2024 14:01:45 +0200 Subject: [PATCH 03/12] Create docker_compose.yml Add docker compose test --- .github/workflows/docker_compose.yml | 44 ++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 .github/workflows/docker_compose.yml diff --git a/.github/workflows/docker_compose.yml b/.github/workflows/docker_compose.yml new file mode 100644 index 000000000..9634474bb --- /dev/null +++ b/.github/workflows/docker_compose.yml @@ -0,0 +1,44 @@ +name: Docker Compose Test + +on: + push: + branches: + - main + pull_request: + branches: + - main + +jobs: + docker-compose-test: + runs-on: ubuntu-latest + + steps: + - name: Checkout repository + uses: actions/checkout@v2 + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v1 + + - name: Build Docker images + run: | + docker-compose -f docker-compose.yml build + + - name: Run Docker Compose + run: | + docker-compose -f docker-compose.yml up -d + + - name: Wait for services to be ready + run: | + # Add any necessary health checks or wait commands + sleep 30 + + # - name: Run tests + # run: | + # docker-compose -f docker-compose.yml run --rm + # # Replace with the name of the service running the tests + # # Replace with the actual command to run your tests + + - name: Shut down Docker Compose + if: always() + run: | + docker-compose -f docker-compose.yml down From dc97819a52c2f8909c8b0b264394832e3d91e614 Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Sun, 23 Jun 2024 20:21:22 +0200 Subject: [PATCH 04/12] fix: align tests naming --- .github/workflows/cd.yaml | 2 +- .github/workflows/cd_prd.yaml | 2 +- .github/workflows/ci.yaml | 2 +- .github/workflows/docker_compose.yml | 2 +- .github/workflows/test_neo4j.yml | 4 ++-- cognee/tests/test_qdrant.py | 2 +- 6 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/cd.yaml b/.github/workflows/cd.yaml index eafc6c887..1a8134e68 100644 --- a/.github/workflows/cd.yaml +++ b/.github/workflows/cd.yaml @@ -1,4 +1,4 @@ -name: publish dev | Docker image +name: publish dev | Docker image on: push: diff --git a/.github/workflows/cd_prd.yaml b/.github/workflows/cd_prd.yaml index e546cef68..00962ab92 100644 --- a/.github/workflows/cd_prd.yaml +++ b/.github/workflows/cd_prd.yaml @@ -1,4 +1,4 @@ -name: publish prd | Docker image +name: publish prd | Docker image on: push: diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index f552112c4..7b2f5f75e 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -1,4 +1,4 @@ -name: build test | Docker image +name: build test | Docker image on: pull_request diff --git a/.github/workflows/docker_compose.yml b/.github/workflows/docker_compose.yml index 9634474bb..bba26cd74 100644 --- a/.github/workflows/docker_compose.yml +++ b/.github/workflows/docker_compose.yml @@ -1,4 +1,4 @@ -name: Docker Compose Test +name: test | docker compose on: push: diff --git a/.github/workflows/test_neo4j.yml b/.github/workflows/test_neo4j.yml index a80ac8e1b..fa6e30e27 100644 --- a/.github/workflows/test_neo4j.yml +++ b/.github/workflows/test_neo4j.yml @@ -1,4 +1,4 @@ -name: test neo4j +name: test | neo4j on: pull_request: @@ -18,7 +18,7 @@ jobs: name: docs changes uses: ./.github/workflows/get_docs_changes.yml - run_common: + run_neo4j_integration_test: name: test needs: get_docs_changes if: needs.get_docs_changes.outputs.changes_outside_docs == 'true' diff --git a/cognee/tests/test_qdrant.py b/cognee/tests/test_qdrant.py index 091a4f331..4085fe5f4 100644 --- a/cognee/tests/test_qdrant.py +++ b/cognee/tests/test_qdrant.py @@ -73,4 +73,4 @@ async def main(): if __name__ == "__main__": import asyncio - asyncio.run(main()) \ No newline at end of file + asyncio.run(main()) From 896b1f078b6bcdd1836a2cdff65a759c38fdbfa2 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Mon, 24 Jun 2024 12:40:01 +0200 Subject: [PATCH 05/12] Update Shiny_new_LLMOps.md --- docs/blog/posts/Shiny_new_LLMOps.md | 28 ++++++---------------------- 1 file changed, 6 insertions(+), 22 deletions(-) diff --git a/docs/blog/posts/Shiny_new_LLMOps.md b/docs/blog/posts/Shiny_new_LLMOps.md index d7c07f2f2..3684e20f2 100644 --- a/docs/blog/posts/Shiny_new_LLMOps.md +++ b/docs/blog/posts/Shiny_new_LLMOps.md @@ -16,21 +16,21 @@ authors: Machine learning has had its place in the business models of companies for several years, but due to high labor costs, lack of generalizability, and long development cycles, it often did not meet the early days' expectations. With the rise of ChatGPT, however, foundation models and LLMs are reemerging as the next step in the evolution in the Machine Learning stack, democratizing it for the end users. -As a consultant and operator in the Berlin startup scene over the past ten years, I have seen the vocation of “Data Scientist” reflect this trend as well. Its initial popularity, decline, and resurgence have mirrored the rise and fall of the Roman Empire. +As a consultant and operator in the Berlin startup scene over the past ten years, I have seen the vocation of “Data Scientist” reflect this trend as well. Its initial popularity, decline, and resurgence easily could have mirrored the rise and fall of the Roman Empire. Humble beginnings, grandiosity, and then the rigidity of thought of early Christianity. In my early years as a data analyst in tier-II e-commerce businesses, data science was considered a prestigious, cutting-edge title. However,  most of these ventures lacked the experience or maturity to properly productionize their business models. -Often, I would see a data scientist building tons of features for their company’s LLM models to only slightly outperform their basic KPIs. They were often stuck in the limbo of demoware, and only the businesses in which data was a key operational element would successfully deploy and run data science systems at scale. +Often, I would see a data scientist building tons of features for their company’s AI models to only slightly improve on their basic KPIs. They were often stuck in the limbo of demoware, and only the businesses in which data was a key operational element would successfully deploy and run data science systems at scale. --- ### **Pandemic and fall out of grace** -Over the years, this low impact-high drain dynamic led to data science falling out of favor. The COVID pandemic seemed to deliver a death blow to the Berlin IT community, with many data scientists having been made redundant. +Over the years, this low impact-high drain dynamic led to data science falling out of favor. The COVID pandemic seemed to deliver a death blow to the Berlin Data Science community, with many data scientists being made redundant. This played out differently in larger markets and companies, where I saw more mature setups heavily relying on machine learning. However, from the perspective of most software *Mittelstand* (a German term for medium-sized enterprises), the technology was seen as a nice-to-have, not a must-have. -Suddenly, with the release of ChatGPT, most knowledge previously required to operate machine-learning became obsolete,  with the only thing now needed being an API key. This dropped the barrier to entry to the floor and created a need for new tools to be built around these APIs. +Suddenly, with the release of ChatGPT, most knowledge previously required to operate machine learning became obsolete,  with the only thing now needed being an API key. This dropped the barrier to entry to the floor and created a need for new tools to be built around these APIs. Tools like Langchain met this need perfectly, enabling everyone to interact with their data. @@ -74,11 +74,11 @@ The challenge is, thus, not connecting Vector and Graph stores or giving a RAG s The main issues still remain ![Shiny_new_LLMOps/llm_problems.png](Shiny_new_LLMOps/llm_problems.png) -The challenge and solution lie in creating a new type of probabilistic data engine—one with an interface as simple as SQL, but which can retrieve and structure information in real time, optimizing what we feed the LLM based on solid evaluations. +The challenge and solution lie in creating a new type of probabilistic data engine—one with an interface as simple as SQL, but which can retrieve and structure information in real-time, optimizing what we feed the LLM based on solid evaluations. --- -Striving to make sense of the best computing engine we know of—our mind—cognitive sciences may offer us clues on how to move forward.. +Striving to make sense of the best computing engine we know of—our mind—cognitive sciences may offer us clues on how to move forward. After all, we process, store, and retrieve data from our mental lexicon with ease, with inherent personalization and dynamic data enrichment. @@ -86,20 +86,4 @@ I believe that understanding the way our mind carries out these processes may al With human language as the new SQL and cognitive theories as inspiration, the next generation of tooling is still on the horizon. -The argument Zhegin made a few months ago is now taking shape. We see feature stores evolving into tools that manage vector and graph stores. -We are still in the early stages. In a recent article, Jon Turrow from Madrona suggests that for the next generation of AI agent infrastructure, what Jia refers to as Graph Ops will become a personalization layer. - ---- - -I believe these terms are interchangeable and that a new in-context feature store, graph ops, and personalization are essentially the same thing. - -Moreover, vector and graph ops are not differentiation categories by themselves. The challenge is not connecting vector and graph stores or giving a RAG system a 10% performance boost. - -The challenge and solution lie in creating a new type of probabilistic data engine, with an interface as simple as SQL, that can retrieve and structure information in real time and optimize what we give to the LLM based on solid evaluations. - -I often refer to cognitive sciences and the best computing engine we know of—our mind. - -We process, store, and retrieve data from our mental lexicon with ease, where personalization is inherent, and data enrichment happens dynamically. - -With human language as the new SQL and cognitive theories as inspiration, the next generation of tooling is still on the horizon. \ No newline at end of file From 9d043f39351bae87645f6f989c2a3ff0d81632bc Mon Sep 17 00:00:00 2001 From: Ikko Eltociear Ashimine Date: Tue, 25 Jun 2024 02:07:32 +0900 Subject: [PATCH 06/12] docs: update README.md vizualize -> visualize --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 42adf7ea0..f756f2152 100644 --- a/README.md +++ b/README.md @@ -74,7 +74,7 @@ or import cognee cognee.config.llm_api_key = "YOUR_OPENAI_API_KEY" ``` -If you are using Networkx, create an account on Graphistry to vizualize results: +If you are using Networkx, create an account on Graphistry to visualize results: ``` cognee.config.set_graphistry_username = "YOUR_USERNAME" From 9c151b0b21ef31dbf0d7e932a805a3ba65001969 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Mon, 24 Jun 2024 21:01:42 +0200 Subject: [PATCH 07/12] Update Dockerfile --- Dockerfile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 148df0dfe..7a98da958 100644 --- a/Dockerfile +++ b/Dockerfile @@ -27,4 +27,6 @@ COPY cognee/ /app/cognee COPY entrypoint.sh /app/entrypoint.sh RUN chmod +x /app/entrypoint.sh -ENTRYPOINT ["/app/entrypoint.sh"] +RUN sed -i 's/\r$//' /app/entrypoint.sh + +# ENTRYPOINT ["/app/entrypoint.sh"] From 68628227177f12e36f60b0398f0b0af53458a572 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Mon, 24 Jun 2024 21:03:51 +0200 Subject: [PATCH 08/12] Update Dockerfile --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 7a98da958..1262a6f17 100644 --- a/Dockerfile +++ b/Dockerfile @@ -29,4 +29,4 @@ RUN chmod +x /app/entrypoint.sh RUN sed -i 's/\r$//' /app/entrypoint.sh -# ENTRYPOINT ["/app/entrypoint.sh"] +ENTRYPOINT ["/app/entrypoint.sh"] From 119fdcc3597f599d0fb8f437603ec94cf514d11b Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 27 Jun 2024 21:49:08 +0200 Subject: [PATCH 09/12] Update .env.template --- .env.template | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.env.template b/.env.template index 16979f404..6be5f518b 100644 --- a/.env.template +++ b/.env.template @@ -15,4 +15,6 @@ AWS_ACCESS_KEY_ID = AWS_SECRET_ACCESS_KEY = QDRANT_API_KEY = QDRANT_API_URL = -DB_TYPE = sqlite \ No newline at end of file +DB_TYPE = sqlite +GRAPHISTRY_USERNAME = xxx +GRAPHISTRY_PASSWORD = xxx From eac6ffac1a79cdcb83441725f09c64f90b90006b Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Sun, 30 Jun 2024 12:25:30 +0200 Subject: [PATCH 10/12] fix: remove dspy dependency --- .../extract_knowledge_graph.py | 22 +- .../search/vector/search_similarity.py | 3 +- poetry.lock | 414 +----------------- pyproject.toml | 1 - 4 files changed, 3 insertions(+), 437 deletions(-) diff --git a/cognee/modules/data/extraction/knowledge_graph/extract_knowledge_graph.py b/cognee/modules/data/extraction/knowledge_graph/extract_knowledge_graph.py index 3d7c74229..6cedb9d50 100644 --- a/cognee/modules/data/extraction/knowledge_graph/extract_knowledge_graph.py +++ b/cognee/modules/data/extraction/knowledge_graph/extract_knowledge_graph.py @@ -1,24 +1,4 @@ -import asyncio -import logging -from cognee.root_dir import get_absolute_path -from .extract_knowledge_graph_module import ExtractKnowledgeGraph from .extract_content_graph import extract_content_graph -logger = logging.getLogger("extract_knowledge_graph(text: str)") - async def extract_knowledge_graph(text: str, cognitive_layer, graph_model): - try: - compiled_extract_knowledge_graph = ExtractKnowledgeGraph() - compiled_extract_knowledge_graph.load(get_absolute_path("./programs/extract_knowledge_graph/extract_knowledge_graph.json")) - - event_loop = asyncio.get_event_loop() - - def sync_extract_knowledge_graph(): - return compiled_extract_knowledge_graph(context = text, question = "") - - return (await event_loop.run_in_executor(None, sync_extract_knowledge_graph)).graph - # return compiled_extract_knowledge_graph(text, question = "").graph - except Exception as error: - # TODO: Log error to Sentry - - return await extract_content_graph(text, cognitive_layer, graph_model) \ No newline at end of file + return await extract_content_graph(text, cognitive_layer, graph_model) diff --git a/cognee/modules/search/vector/search_similarity.py b/cognee/modules/search/vector/search_similarity.py index 13b6039bf..be1016dca 100644 --- a/cognee/modules/search/vector/search_similarity.py +++ b/cognee/modules/search/vector/search_similarity.py @@ -1,8 +1,7 @@ from cognee.infrastructure.databases.graph.get_graph_client import get_graph_client -from cognee.infrastructure.databases.graph.config import get_graph_config from cognee.infrastructure.databases.vector import get_vector_engine -async def search_similarity(query: str, graph): +async def search_similarity(query: str, graph): # graph must be there in order to be compatible with generic call # graph_config = get_graph_config() # # graph_db_type = graph_config.graph_engine diff --git a/poetry.lock b/poetry.lock index dd4f35d25..ab395dfba 100644 --- a/poetry.lock +++ b/poetry.lock @@ -139,25 +139,6 @@ typing_extensions = ">=4.0" dev = ["attribution (==1.7.0)", "black (==24.2.0)", "coverage[toml] (==7.4.1)", "flake8 (==7.0.0)", "flake8-bugbear (==24.2.6)", "flit (==3.9.0)", "mypy (==1.8.0)", "ufmt (==2.3.0)", "usort (==1.0.8.post1)"] docs = ["sphinx (==7.2.6)", "sphinx-mdinclude (==0.5.3)"] -[[package]] -name = "alembic" -version = "1.13.1" -description = "A database migration tool for SQLAlchemy." -optional = false -python-versions = ">=3.8" -files = [ - 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is a library for enriching LLM context with a semantic layer for better understanding and reasoning." authors = ["Vasilije Markovic", "Boris Arzentar"] readme = "README.md" From 9a57659266d893bb58fe2e1ad4ea38a38f4f5a1d Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Tue, 2 Jul 2024 08:37:51 +0200 Subject: [PATCH 12/12] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index f756f2152..e42b3a259 100644 --- a/README.md +++ b/README.md @@ -97,11 +97,11 @@ import cognee text = """Natural language processing (NLP) is an interdisciplinary subfield of computer science and information retrieval""" -cognee.add([text], "example_dataset") # Add a new piece of information +await cognee.add([text], "example_dataset") # Add a new piece of information -cognee.cognify() # Use LLMs and cognee to create knowledge +await cognee.cognify() # Use LLMs and cognee to create knowledge -search_results = cognee.search("SIMILARITY", {'query': 'Tell me about NLP'}) # Query cognee for the knowledge +await search_results = cognee.search("SIMILARITY", {'query': 'Tell me about NLP'}) # Query cognee for the knowledge print(search_results)