preamble.tex

%%
% If they're installed, use Bergamo and Chantilly from www.fontsite.com.
% They're clones of Bembo and Gill Sans, respectively.
%\IfFileExists{bergamo.sty}{\usepackage[osf]{bergamo}}{}% Bembo
%\IfFileExists{chantill.sty}{\usepackage{chantill}}{}% Gill Sans

\usepackage[protrusion=true,expansion,babel=true]{microtype}

%%
% Just some sample text
\usepackage{lipsum}

%%
% For nicely typeset tabular material
\usepackage{booktabs}
\usepackage{multirow}
\usepackage[export]{adjustbox}
\usepackage{array}
\usepackage{color}
\usepackage{tabularray}

\newcolumntype{L}[1]{>{\noindent\RaggedRight\arraybackslash\hspace{0pt}}p{#1}}
\newcolumntype{R}[1]{>{\noindent\RaggedLeft\arraybackslash\hspace{0pt}}p{#1}}
\newcolumntype{C}[1]{>{\noindent\Centering\arraybackslash\hspace{0pt}}p{#1}}

%%
% For graphics / images
\usepackage{graphicx}
\setkeys{Gin}{width=\linewidth,totalheight=\textheight,keepaspectratio}
\graphicspath{{media/}}

% What
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}

% Bibliography
\usepackage[
style=ieee,
citestyle=numeric-comp,
autocite=inline,
autopunct=true,
backend=biber,
maxbibnames=99,
maxcitenames=2,
mincitenames=1,
]{biblatex}

%%
% Maths
\usepackage{amsmath}

% Prints a trailing space in a smart way.
\usepackage{xspace}

% Inserts a blank page
\newcommand{\blankpage}{\newpage\hbox{}\thispagestyle{empty}\newpage}

% Referencing
\usepackage[unicode]{hyperref}
\usepackage[nameinlink]{cleveref}

\hypersetup{%
	bookmarksnumbered = true, % Show section numbering in the PDF table of contents. Allows easier browsing of the document
	colorlinks = true, % uncomment this line if you prefer colored hyperlinks (e.g., for onscreen viewing)
%	pdfborder = {0 0 0},
	bookmarksdepth = subsection,
%	citecolor = DarkGreen,
%	linkcolor = DarkBlue,
%	urlcolor = DarkGreen,
}

%\AtBeginDocument{%
%	\hypersetup{
%		pdfauthor={\plainauthor}
%		pdftitle={\plaintitle},
%	}%
%}

\usepackage[binary-units=true]{siunitx}

% Modifications to the default tufte template to make it more applicable to a thesis
% Credit goes to Tiffany Tseng, lalider, see https://github.com/lalider/tufte-latex-thesis

\usepackage[parfill]{parskip}

% remove paragraph indentation
\makeatletter
% Paragraph indentation and separation for normal text
\renewcommand{\@tufte@reset@par}{%
	\setlength{\RaggedRightParindent}{0.0pc}%
	\setlength{\JustifyingParindent}{0.0pc}%
	\setlength{\parindent}{0pc}%
	\setlength{\parskip}{\baselineskip}%
}
\@tufte@reset@par

% Paragraph indentation and separation for marginal text
\renewcommand{\@tufte@margin@par}{%
	\setlength{\RaggedRightParindent}{0.0pc}%
	\setlength{\JustifyingParindent}{0.0pc}%
	\setlength{\parindent}{0.0pc}%
	\setlength{\parskip}{10pt}%
}
\makeatother

\titleformat{\section}%
[hang]% shape
{\normalfont\Large}% format applied to label+text
{\thesection}% label
{1em}% horizontal separation between label and title body
{}% before the title body
[]% after the title body

%\titlespacing*{\section}{0pt}{3.5ex plus 1ex minus .2ex}{2.3ex plus .2ex}
%\titlespacing*{\subsection}{0pt}{3.25ex plus 1ex minus .2ex}{1.5ex plus.2ex}
\titlespacing*{\section}{0pt}{30pt}{20pt}
\titlespacing*{\subsection}{0pt}{20pt}{5pt}


% Disable adding empty pages without a purpose (not intended for printing in a book format...)
\makeatletter
\def\cleardoublepage{
	\clearpage%
}
\makeatother

% Acronyms
\usepackage{acro}
\acsetup{
	use-id-as-short,
	make-links=false,
	case-sensitive=false,
	patch/floats=false,
	patch/caption=false,
	patch/tabularx=false
}
\input{acronyms.tex}
\input{commands.tex}

\NewAcroTemplate[list]{glossary}{%
	\begin{description}
		\acronymsmapF{%
			\item[\sffamily\textbf{\acrowrite{short}}] \acrowrite{long}%
			\acroifanyT {foreign,extra} {~(}%
			\acrowrite {foreign}%
			\acroifallT {foreign,extra} {,~}%
			\acrowrite {extra}%
			\acroifanyT {foreign,extra} {)}%
			\acropagefill%
			\acropages%
				{ \acrotranslate {page} \nobreakspace }%
				{ \acrotranslate {pages} \nobreakspace }%
		}%
		{ \item \AcroRerun{list} }%
		\end {description}
	}

% Various utilities
\usepackage{tabularx}
\usepackage[singlelinecheck=false]{caption}
\usepackage{subcaption}
\usepackage{comment}

% Generates the index
\usepackage{makeidx}
\makeindex

\usepackage{tikz}
\usepackage{pgfplots}
\pgfplotsset{compat = 1.3}
\usetikzlibrary{pie}
\usepackage{physics}
\let\Re=\relax
\let\Im=\relax

% Colours
\definecolor{off}{HTML}{e53935}
\definecolor{on}{HTML}{43a047}
\usepackage{xcolor-solarized}
\usepackage{xcolor-material}
\usepackage{colortbl}

%\usepackage{todonotes}
\usepackage{enumitem}
\usepackage[absolute,overlay]{textpos}

% Code
\usepackage{minted}
\usepackage{xpatch,letltxmacro}
\LetLtxMacro{\cminted}{\minted}
\let\endcminted\endminted
\xpretocmd{\cminted}{\RecustomVerbatimEnvironment{Verbatim}{BVerbatim}{}}{}{}
\definecolor{mintedbg}{rgb}{1,1,1}
\setminted{
	bgcolor=mintedbg,
	tabsize=2,
	fontsize=\footnotesize,
	linenos,
	breaklines
}
\setminted[text]{baselinestretch=0.8}

% Git magic
\makeatletter
\write18{git log --pretty='format:\@percentchar Creset\@percentchar s' --no-merges -1 > \jobname.git1.tmp}
\write18{git rev-parse --short HEAD > \jobname.git2.tmp}
\def\gitcommit{\input{\jobname.git2.tmp}\unskip}
\def\gitcommitmessage{\input{\jobname.git1.tmp}\unskip}
\makeatother

% Smart citations

\makeatletter

%\def\blx@imc@mkbibquote{\blx@enquote}

\newbibmacro*{cite:title}{%
  \printtext[bibhyperref]{%
    \printfield[citetitle]{labeltitle}}%
  \finentry}

\newbibmacro*{cite:shorthand}{%
	\printtext[bibhyperref]{\printfield{shorthand}}}

\newbibmacro*{cite:full}{%
	\iffieldundef{shorthand}
	{\printnames{labelname}%
		\setunit*{\printdelim{nametitledelim}}%
		\usebibmacro{cite:title}}%
	{\usebibmacro{cite:shorthand}}}

\newbibmacro*{cite:marginnote}{%
	\marginnote{%
		% \mkbibbrackets should be used here probably
		[%
			\printfield{labelprefix}%
			\printfield{labelnumber}%
		]
		\usebibmacro{cite:full}%
	}%
}

\DeclareCiteCommand{\dualcite}[\mkbibbrackets]
  {\usebibmacro{cite:init}%
   \usebibmacro{prenote}}
  {\usebibmacro{citeindex}%
   \usebibmacro{cite:marginnote}%
   \usebibmacro{cite:comp}}%
  {}
  {\usebibmacro{cite:dump}%
   \usebibmacro{postnote}}

\def\tuftecite{
	\iffootnote{footnote}{text}
}

% Patching commands that enter information in margins, so that we can detect which
% citation should be used
\newtoggle{inmargin}
\pretocmd{\marginpar}{\toggletrue{inmargin}}{}{}
\apptocmd{\@xympar}{\togglefalse{inmargin}}{}{}
\pretocmd{\@tufte@float}{\toggletrue{inmargin}}{}{}
\pretocmd{\end@tufte@float}{\togglefalse{inmargin}}{}{}
\pretocmd{\@tufte@margin@float}{\toggletrue{inmargin}}{}{}
\pretocmd{\end@tufte@margin@float}{\togglefalse{inmargin}}{}{}

\def\autocite{%
	\iftoggle{inmargin}\parencite\dualcite%
}

% Tufte disables subparagraphs. This brings them back.
\renewcommand\subparagraph{\@startsection{subparagraph}{5}{\parindent}%
	{3.25ex \@plus1ex \@minus .2ex}%
	{-1em}%
	{\hspace{1em}\normalfont\normalsize\itshape}}

% \acuse command that also adds the current page
%\NewAcroTemplate{fdirthesisempty}{}
%\NewAcroCommand\acusepage{m}{}
\let\acusepage\acuse

\makeatother