Automating FIM Run Profiles for Lync
Simply load the functions in your current powershell session and run
CsFimMaRun -ManagementAgents @("ResourceForest","UserForest1","UserForest2") -Type Full
or
CsFimMaRun -ManagementAgents @("ResourceForest","UserForest1","UserForest2") -Type Delta
and the run profiles should be executed in order. For automation just add one of the above to the end of the script and run that in a windows task scheduler. One delta update a day is often enough, but if the environment is very dynamic you might want to run it more often.
If you set $debugpreference="Continue" it'll display the status after each operation as well.