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epilit.bib
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% This file was created with JabRef 2.10b2.
% Encoding: UTF8
@Article{abubakar2004isolation,
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@Article{acebrion2005kuramoto,
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@Article{Acevedo2009,
Title = {{A}utomated {C}lassification {O}f {B}ird {A}nd {A}mphibian {C}alls {U}sing {M}achine {L}earning: {A} {C}omparison {O}f {M}ethods},
Author = {Acevedo, Miguel A. And Corrada-Bravo, CJ And Corrada-Bravo, Hector And Villanueva-Rivera, LJ And Aide, TM},
Journal = {Ecological Informatics},
Year = {2009},
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Date-modified = {2011-12-12 18:20:35 0000},
Doi = {10.1016/J.Ecoinf.2009.06.005},
ISSN = {1574-9541},
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Title = {{U}sing automated digital recording systems as effective tools for the monitoring of birds and amphibians},
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Doi = {10.1016/s1769-4493(08)70101-8},
Keywords = {+generalRefs},
Publisher = {BioOne}
}
@Article{ackleh2003competitive,
Title = {{C}ompetitive exclusion and coexistence for pathogens in an epidemic model with variable population size},
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Volume = {47},
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Keywords = {+ch2, +compEx},
Publisher = {Springer}
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@Article{ackleh2014robust,
Title = {{R}obust uniform persistence and competitive exclusion in a nonautonomous multi-strain {SIR} epidemic model with disease-induced mortality},
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Year = {2014},
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Pages = {453--475},
Doi = {10.1007/s00285-012-0636-4},
Keywords = {+!compEx = mortality},
Publisher = {Springer}
}
@Article{adams2012you,
Title = {{D}o you hear what {I} hear? {I}mplications of detector selection for acoustic monitoring of bats},
Author = {Adams, A.M. and Jantzen, M.K. and Hamilton, R.M. and Fenton, M.B.},
Journal = {Methods Ecol. Evol.},
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Publisher = {Wiley Online Library}
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@Article{Adams2010,
Title = {{R}eliable {A}utomation {O}f {B}at {C}all {I}dentification {F}or {Eastern New South Wales, Australia}, {U}sing {C}lassification {T}rees {A}nd {A}nascheme {S}oftware},
Author = {Adams, Maria D. And Law, Bradley S. And Gibson, Matthew S.},
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ISSN = {1508-1109},
Unique-id = {Isi:000278753700018}
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Title = {{M}igration alone can produce persistence of host-parasitoid models},
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Title = {{I}s space necessary? {I}nterference competition and limits to biodiversity},
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Number = {11},
Pages = {3226--3232},
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@Article{agnarsson2011phylo,
Title = {{A} time-calibrated species-level phylogeny of bats ({Chiroptera, Mammalia})},
Author = {Agnarsson, I. and Zambrana-Torrelio, C.M. and Flores-Saldana, N.P. and May-Collado, L.J.},
Journal = {PLoS currents},
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@Article{ahlen1999use,
Title = {{U}se of ultrasound detectors for bat studies in {Europe}: experiences from field identification, surveys, and monitoring},
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Publisher = {-}
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Year = {2006},
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Publisher = {APS}
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}
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Journal = {BMC Infect. Dis.},
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Owner = {tim},
Publisher = {BioMed Central Ltd},
Timestamp = {2016.01.15}
}
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Publisher = {Public Library of Science}
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Title = {{D}ecreased overall virulence in coinfected hosts leads to the persistence of virulent parasites},
Author = {Alizon, Samuel},
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Year = {2008},
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Pages = {E67--E79},
Volume = {172},
Doi = {10.1086/588077},
Owner = {tim},
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Timestamp = {2016.06.05}
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Title = {{SIS} epidemic models with multiple pathogen strains},
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Year = {2004},
Number = {1},
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Doi = {10.1080/10236190310001603680},
Keywords = {+ch2, +2patchCoex, +netCoex, +compEx},
Publisher = {Taylor \& Francis},
Review = {It is shown for the single patch model that the basic reproduction number determines which strain dominates and persists. With two patches, there is a greater chance that more than one strain will coexist.}
}
@Article{allen2003dynamics,
Title = {{T}he dynamics of two viral infections in a single host population with applications to hantavirus},
Author = {Allen, Linda JS and Langlais, Michel and Phillips, Carleton J},
Journal = {Math. Biosci.},
Year = {2003},
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Pages = {191--217},
Volume = {186},
Doi = {10.1016/j.mbs.2003.08.002},
Owner = {tim},
Publisher = {Elsevier},
Timestamp = {2016.01.16}
}
@Article{altizer2006sesonality,
Title = {{S}easonality and dynamics of infectious diseases.},
Author = {Altizer, S and Dobson, A and Hosseini, P and Hudson, P and Pascual, M and Rohani, P},
Journal = {Ecol. Lett.},
Year = {2006},
Pages = {467--484},
Volume = {9},
Doi = {10.1111/j.1461-0248.2005.00879.x},
Review = {Altizer2003social claims "greater degrees of host sociality or gregariousness should translate to higher parasite prevalence, intensity, and diversity (Møller et al. 1993)" But no mention of richness/diversity here.}
}
@Article{altizer2007threatened,
Title = {{D}o threatened hosts have fewer parasites? {A} comparative study in primates},
Author = {Altizer, Sonia and Nunn, Charles L and Lindenfors, Patrik},
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Year = {2007},
Number = {2},
Pages = {304--314},
Volume = {76},
Doi = {10.1111/j.1365-2656.2007.01214.x},
Publisher = {Wiley Online Library}
}
@Article{altizer2003social,
Title = {{S}ocial organization and parasite risk in mammals: integrating theory and empirical studies},
Author = {Altizer, Sonia and Nunn, Charles L and Thrall, Peter H and Gittleman, John L and Antonovics, Janis and Cunnningham, Andrew A and Dobson, Andrew P and Ezenwa, Vanessa and Jones, Kate E and Pedersen, Amy B and Poss Mary and Pulliam, Juliet R C },
Journal = {Annu. Rev. Ecol. Evol. Syst.},
Year = {2003},
Pages = {517--547},
Doi = {10.1146/annurev.ecolsys.34.030102.151725},
Publisher = {JSTOR},
Review = {Claims "greater degrees of host sociality or gregariousness should translate to higher parasite prevalence, intensity, and diversity (Møller et al. 1993)" moller1993immune. But no mention of diversity in that paper.}
}
@Book{Altringham1996,
Title = {{B}ats: biology and behaviour},
Author = {Altringham, John D and McOwat, Tom and Hammond, Lucy},
Publisher = {Oxford University Press Oxford},
Year = {1996}
}
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Title = {{T}emporal dynamics of {E}uropean bat {L}yssavirus type 1 and survival of \emph{Myotis myotis} bats in natural colonies},
Author = {Amengual, Blanca and Bourhy, Herv{\'e} and L{\'o}pez-Roig, Marc and Serra-Cobo, Jordi},
Journal = {PLoS One},
Year = {2007},
Number = {6},
Pages = {e566},
Volume = {2},
Doi = {10.1371/journal.pone.0000566},
Owner = {tim},
Publisher = {Public Library of Science},
Timestamp = {2016.01.18}
}
@Article{amman2012seasonal,
Title = {{S}easonal pulses of {M}arburg virus circulation in juvenile \emph{Rousettus aegyptiacus} bats coincide with periods of increased risk of human infection},
Author = {Amman, Brian R. AND Carroll, Serena A. AND Reed, Zachary D. AND Sealy, Tara K. AND Balinandi, Stephen AND Swanepoel, Robert AND Kemp, Alan AND Erickson, Bobbie Rae AND Comer, James A. AND Campbell, Shelley AND Cannon, Deborah L. AND Khristova, Marina L. AND Atimnedi, Patrick AND Paddock, Christopher D. AND Kent Crockett, Rebekah J. AND Flietstra, Timothy D. AND Warfield, Kelly L. AND Unfer, Robert AND Katongole-Mbidde, Edward AND Downing, Robert AND Tappero, Jordan W. AND Zaki, Sherif R. AND Rollin, Pierre E. AND Ksiazek, Thomas G. AND Nichol, Stuart T. AND Towner, Jonathan S.},
Journal = {PLoS Pathog.},
Year = {2012},
doi = {10.1371/journal.ppat.1002877},
Number = {10},
Pages = {e1002877},
Volume = {8},
Publisher = {Public Library of Science}
}
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Title = {{T}he need to get the basics right in wildlife field studies},
Author = {Anderson, David R},
Journal = {Wildl. Soc. Bull.},
Year = {2001},
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Pages = {1294--1297},
Volume = {29},
Date-added = {2014-07-11 14:20:10 0000},
Date-modified = {2014-09-17 13:41:06 0000},
Doi = {10.1211/pj.2013.11124181},
Publisher = {JSTOR}
}
@Article{anderson1979population,
Title = {{P}opulation biology of infectious diseases: {P}art {I}.},
Author = {Anderson, Roy M and May, Robert M},
Journal = {Nature},
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Number = {5722},
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Doi = {10.1038/280361a0},
Owner = {tim},
Timestamp = {2016.01.15}
}
@Article{andreasen1997dynamics,
Title = {{T}he dynamics of cocirculating influenza strains conferring partial cross-immunity},
Author = {Andreasen, Viggo and Lin, Juan and Levin, Simon A},
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Year = {1997},
Number = {7},
Pages = {825--842},
Volume = {35},
Publisher = {Springer}
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@Article{andreassen2013semi,
Title = {{S}emi-automatic long-term acoustic surveying: {A} case study with bats},
Author = {Andreassen, T{\'o}rur and Surlykke, Annemarie and Hallam, John},
Journal = {Ecological Informatics},
Year = {2013},
Publisher = {Elsevier}
}
@Article{andren1994effects,
Title = {{E}ffects of habitat fragmentation on birds and mammals in landscapes with different proportions of suitable habitat: a review},
Author = {Andren, Henrik},
Journal = {Oikos},
Year = {1994},
Pages = {355--366},
Doi = {10.2307/3545823},
Publisher = {JSTOR}
}
@Article{andriollo2015two,
Title = {{T}wo {M}itochondrial {B}arcodes for one {B}iological {S}pecies: {T}he {C}ase of {E}uropean {K}uhl's {P}ipistrelles ({C}hiroptera)},
Author = {Andriollo, Tommy and Naciri, Yamama and Ruedi, Manuel},
Journal = {PLoS One},
Year = {2015},
Number = {8},
Pages = {e0134881},
Volume = {10},
Owner = {tim},
Publisher = {Public Library of Science},
Timestamp = {2015.10.19}
}
@Article{anthony2013strategy,
Title = {{A} strategy to estimate unknown viral diversity in mammals},
Author = {S. J. Anthony and J. H. Epstein and K. A. Murray and I. Navarrete-Macias and C. M. Zambrana-Torrelio and A. Solovyov and R. Ojeda-Flores and N. C. Arrigo and A. Islam and S. Ali Khan and P. Hosseini and T. L. Bogich and K. J. Olival and M. D. Sanchez-Leon and W. B. Karesh and T. Goldstein and S. P. Luby and S. S. Morse and J. A. K. Mazet and P. Daszak and W. I. Lipkin},
Journal = {MBio},
Year = {2013},
Number = {5},
Pages = {e00598--13},
Volume = {4},
Doi = {10.1128/mBio.00598-13},
Publisher = {Am Soc Microbiol},
Review = {55 viruses from nine viral families P. giganteus}
}
@Article{anthony2015non,
Title = {{N}on-random patterns in viral diversity},
Author = {Simon J. Anthony and Ariful Islam and Christine Johnson and Isamara Navarrete-Macias and Eliza Liang and Komal Jain and Peta L. Hitchens and Xiaoyu Che and Alexander Soloyvov and Allison L. Hicks and Rafael Ojeda-Flores and Carlos Zambrana-Torrelio and Werner Ulrich and Melinda K. Rostal and Alexandra Petrosov and Joel Garcia and Najmul Haider and Nathan Wolfe and Tracey Goldstein and Stephen S. Morse and Mahmudur Rahman and Jonathan H. Epstein and Jonna K. Mazet and Peter Daszak and W. Ian Lipkin},
Journal = {Nat. Commun.},
Year = {2015},
Volume = {6},
Doi = {10.1038/ncomms9147},
Owner = {tim},
Publisher = {Nature Publishing Group},
Review = {We sample macaque faeces across nine sites in Bangladesh and use consensus PCR and sequencing to discover 184 viruses from 14 viral families. We then use network modelling and statistical null-hypothesis testing to show the presence of non-random deterministic patterns at different scales, between sites and within individuals. and used to confirm that individual macaques mostly shared viruses with other individuals from the same site, and only rarely with those located elsewhere By applying phylogenetic measures of β-diversity (Beta Nearest Taxon Index30, 31) to a subset of the community (applied to the 120 PbVs) we were also able to infer that these non-random patterns may be emerging due to dispersal limitation It strongly suggests deterministic mechanisms do exist to limit the co-occurrence of closely related viruses in the same animal, and while the specific mechanisms are unknown we postulate they could well include virus:virus interactions such as competitive exclusion (analogous to the theory of limiting similarity16) or virus:host interactions like immune recognition.},
Timestamp = {2016.01.09}
}
@Article{antia2003role,
Title = {{T}he role of evolution in the emergence of infectious diseases},
Author = {Antia, Rustom and Regoes, Roland R and Koella, Jacob C and Bergstrom, Carl T},
Journal = {Nature},
Year = {2003},
Number = {6967},
Pages = {658--661},
Volume = {426},
Publisher = {Nature Publishing Group}
}
@Article{apolloni2014metapopulation,
Title = {{M}etapopulation epidemic models with heterogeneous mixing and travel behaviour},
Author = {Apolloni, Andrea and Poletto, Chiara and Ramasco, Jos{\'e} J and Jensen, Pablo and Colizza, Vittoria},
Journal = {Theor. Biol. Med. Model.},
Year = {2014},
Number = {1},
Pages = {3},
Volume = {11},
Publisher = {BioMed Central Ltd}
}
@Article{arankalle2011genomic,
Title = {{G}enomic characterization of nipah virus, west {Bengal, India}},
Author = {Arankalle, V.A. and Bandyopadhyay, B.T. and Ramdasi, A.Y. and Jadi, R. and Patil, D.R. and Rahman, M. and Majumdar, M. and Banerjee, P.S. and Hati, A.K. and Goswami, R.P. and others},
Journal = {Emerg. Infect. Dis.},
Year = {2011},
Number = {5},
Pages = {907--909},
Volume = {17},
Publisher = {Centers for Disease Control and Prevention}
}
@Article{archer2016digging,
Title = {{D}igging for answers: contributions of density-and frequency-dependent factors on ectoparasite burden in a social mammal},
Author = {Archer, Elizabeth K and Bennett, Nigel C and Faulkes, Chris G and Lutermann, Heike},
Journal = {Oecologia},
Year = {2016},
Number = {2},
Pages = {429--438},
Volume = {180},
Doi = {10.1007/s00442-015-3494-0},
Keywords = {+ch4},
Owner = {tim},
Publisher = {Springer},
Review = {We found that ectoparasite prevalence, abundance and species richness decreased with increasing host density at a regional scale.},
Timestamp = {2016.02.01}
}
@Article{arino2006disease,
Title = {{D}isease spread in metapopulations},
Author = {Arino, Julien and Van den Driessche, P},
Journal = {Nonlinear Dynamics and Evolution Equations, Fields Inst. Commun},
Year = {2006},
Pages = {1--13},
Volume = {48}
}
@Article{arita1993rarity,
Title = {{R}arity in {N}eotropical bats: correlations with phylogeny, diet, and body mass},
Author = {Arita, Hector T},
Journal = {Ecol. Appl.},
Year = {1993},
Pages = {506--517},
Doi = {10.2307/1941919},
Publisher = {JSTOR}
}
@Article{Armitage2010,
Title = {{A} {C}omparison {O}f {S}upervised {L}earning {T}echniques {I}n {T}he {C}lassification {O}f {B}at {E}cholocation {C}alls},
Author = {Armitage, D. W. And Ober, H. K.},
Journal = {Ecological Informatics},
Year = {2010},
Number = {6},
Pages = {465--473},
Volume = {5},
Bdsk-url-1 = {Http://Dx.Doi.Org/10.1016/J.Ecoinf.2010.08.001%7d},
Date-added = {2011-12-12 18:20:31 0000},
Date-modified = {2011-12-12 18:20:31 0000},
Doi = {10.1016/J.Ecoinf.2010.08.001},
ISSN = {1574-9541},
Nomonth = {Nov},
Unique-id = {Isi:000284198400003}
}
@Article{arneberg2002host,
Title = {{H}ost population density and body mass as determinants of species richness in parasite communities: comparative analyses of directly transmitted nematodes of mammals},
Author = {Arneberg, Per},
Journal = {Ecography},
Year = {2002},
Number = {1},
Pages = {88--94},
Doi = {10.1034/j.1600-0587.2002.250110.x},
Keywords = {+empiricalDiversity = density, bodysize, +ch3},
Owner = {tim},
Publisher = {Wiley Online Library},
Review = {Analyses were done using the phylogenetically independent contrast method. Host population density and parasite species richness were strongly positively correlated when the effects of host body weight had been controlled for. A positive relationship between parasite species richness and host body weight was also found, but the effect of host densities had to be controlled for to see this. 45 species of mammal},
Timestamp = {2015.05.20}
}
@Article{arnold2007population,
Title = {{P}opulation structure and sex-biased dispersal in the forest dwelling vespertilionid bat, \emph{Myotis septentrionalis}},
Author = {Arnold, Bryan D},
Journal = {Am. Midl. Nat.},
Year = {2007},
Number = {2},
Pages = {374--384},
Volume = {157},
Keywords = {+fst, +ch3},
Publisher = {BioOne}
}
@Article{arseneault2013genetic,
Title = {{G}enetic population structure within and among little brown bat ( \emph{Myotis lucifugus}) maternity colonies within mainland {N}ova {S}cotia, {C}anada},
Author = {Arseneault, Krista},
Year = {2013},
Keywords = {+fst, +ch3},
Publisher = {Halifax, NS: Saint Mary's University}
}
@Article{atterby2010population,
Title = {{P}opulation genetic structure of the {D}aubenton’s bat ( \emph{Myotis daubentonii}) in western {E}urope and the associated occurrence of rabies},
Author = {Atterby, Helen and Aegerter, James N and Smith, Graham C and Conyers, Christine M and Allnutt, Theodore R and Ruedi, Manuel and MacNicoll, Alan D},
Journal = {European Journal of Wildlife Research},
Year = {2010},
Number = {1},
Pages = {67--81},
Volume = {56},
Keywords = {+fst, +ch3},
Publisher = {Springer}
}
@Article{atwood2006influence,
Title = {{T}he influence of habitat patch attributes on coyote group size and interaction in a fragmented landscape},
Author = {Atwood, Todd C},
Journal = {Can. J. Zool.},
Year = {2006},
Number = {1},
Pages = {80--87},
Volume = {84},
Doi = {10.1139/z05-180},
Publisher = {NRC Research Press}
}
@PhdThesis{august2012thesis,
Title = {{T}he {S}ocial {S}tructure, {E}cology and {P}athogens of {B}ats in the {UK}},
Author = {August, T.A.},
School = {University of Exeter},
Year = {2012},
Address = {UK}
}
@Article{august2014sympatric,
Title = {{S}ympatric woodland \emph{Myotis} bats form tight-knit social groups with exclusive roost home ranges},
Author = {August, Tom A and Nunn, Miles A and Fensome, Amy G and Linton, Danielle M and Mathews, Fiona},
Journal = {PloS One},
Year = {2014},
Number = {10},
Pages = {e112225},
Volume = {9},
Doi = {10.1371/journal.pone.0112225},
Owner = {tim},
Publisher = {Public Library of Science},
Timestamp = {2016.03.05}
}
@Article{baagoe1987scandinavian,
Title = {{T}he {S}candinavian bat fauna: adaptive wing morphology and free flight in the field},
Author = {Baag{\o}e, HJ},
Journal = {Recent advances in the study of bats},
Year = {1987},
Pages = {57--74},
Publisher = {Cambridge University Press Cambridge}
}
@Article{baerwald2016migratory,
Title = {{A}re migratory behaviours of bats socially transmitted?},
Author = {Baerwald, E. F. and Barclay, R. M. R.},
Journal = {R. Soc. Open Sci.},
Year = {2016},
Number = {4},
Volume = {3},
Abstract = {To migrate, animals rely on endogenous, genetically inherited programmes, or socially transmitted information about routes and behaviours, or a combination of the two. In long-lived animals with extended parental care, as in bats, migration tends to be socially transmitted rather than endogenous. For a young bat to learn migration via social transmission, they would need to follow an experienced individual, most likely one roosting nearby. Therefore, we predicted that bats travelling together originate from the same place. It is also likely that young bats would follow their mothers or other kin, so we predicted that bats travelling together are more closely related to each other than bats not travelling together. To test our predictions, we used microsatellite genotypes and stable isotope values of δ13C, δ15N and δ2H to analyse the relatedness and geographical origins of migrating hoary bats (Lasiurus cinereus/Aeorestes cinereus (Baird et al. 2015 J. Mammal. 96, 1255{\textendash}1274 (doi:10.1093/jmammal/gyv135)); n = 133) and silver-haired bats (Lasionycteris noctivagans; n = 87) killed at wind turbines over two consecutive autumn migrations. Contrary to our predictions, there was no evidence that related dyads of hoary bats or silver-haired bats were killed on the same night more frequently than expected by chance, or that the number of days between the fatalities of dyad members was influenced by relatedness or latitude of origin. Our data suggest that these bats do not socially transmit migration routes and behaviours among close kin.},
Doi = {10.1098/rsos.150658},
%Eprint = {http://rsos.royalsocietypublishing.org/content/3/4/150658.full.pdf},
Publisher = {The Royal Society},
%Url = {http://rsos.royalsocietypublishing.org/content/3/4/150658}
}
@Article{bahl2011temporally,
Title = {{T}emporally structured metapopulation dynamics and persistence of influenza {A H3N2} virus in humans},
Author = {Bahl, Justin and Nelson, Martha I and Chan, Kwok H and Chen, Rubing and Vijaykrishna, Dhanasekaran and Halpin, Rebecca A and Stockwell, Timothy B and Lin, Xudong and Wentworth, David E and Ghedin, Elodie and others},
Journal = {PNAS},
Year = {2011},
Number = {48},
Pages = {19359--19364},
Volume = {108},
Publisher = {National Acad Sciences}
}
@Article{bailey2013advances,
Title = {{A}dvances and applications of occupancy models},
Author = {Bailey, Larissa L and MacKenzie, Darryl I and Nichols, James D},
Journal = {Methods Ecol. Evol.},
Year = {2013},
Date-added = {2014-11-27 14:07:27 0000},
Date-modified = {2014-11-27 14:07:27 0000},
Publisher = {Wiley Online Library}
}
@Article{bajardi2011human,
Title = {{H}uman mobility networks, travel restrictions, and the global spread of 2009 {H}1{N}1 pandemic},
Author = {Bajardi, Paolo and Poletto, Chiara and Ramasco, Jose J and Tizzoni, Michele and Colizza, Vittoria and Vespignani, Alessandro},
Journal = {PLoS One},
Year = {2011},
Number = {1},
Pages = {e16591},
Volume = {6},
Publisher = {Public Library of Science}
}
@Article{baker2013novel,
Title = {{N}ovel, {P}otentially {Z}oonotic {P}aramyxoviruses from the {A}frican {S}traw-{C}olored {F}ruit {B}at {E}idolon helvum},
Author = {Baker, K.S. and Todd, S. and Marsh, G.A. and Crameri, G. and Barr, J. and Kamins, A.O. and Peel, A.J. and Yu, M. and Hayman, D.T.S. and Nadjm, B. and others},
Journal = {J. Virol.},
Year = {2013},
Number = {3},
Pages = {1348--1358},
Volume = {87},
Publisher = {Am Soc Microbiol}
}
@Article{baker2012co,
Title = {{C}o-circulation of diverse paramyxoviruses in an urban {African} fruit bat population},
Author = {Baker, K.S. and Todd, S. and Marsh, G. and Fernandez-Loras, A. and Suu-Ire, R. and Wood, J.L.N. and Wang, L.F. and Murcia, P.R. and Cunningham, A.A.},
Journal = {J. Gen. Virol.},
Year = {2012},
Number = {Pt 4},
Pages = {850--856},
Volume = {93},
Publisher = {Soc General Microbiol}
}
@Article{baker2014viral,
Title = {{V}iral antibody dynamics in a chiropteran host},
Author = {Baker, Kate S and Suu-Ire, Richard and Barr, Jennifer and Hayman, David TS and Broder, Christopher C and Horton, Daniel L and Durrant, Christopher and Murcia, Pablo R and Cunningham, Andrew A and Wood, James LN},
Journal = {J. Anim. Ecol.},
Year = {2014},
Number = {2},
Pages = {415--428},
Volume = {83},
Publisher = {Wiley Online Library}
}
@Article{balcan2009multiscale,
Title = {{M}ultiscale mobility networks and the spatial spreading of infectious diseases},
Author = {Balcan, Duygu and Colizza, Vittoria and Gon{\c{c}}alves, Bruno and Hu, Hao and Ramasco, Jos{\'e} J and Vespignani, Alessandro},
Journal = {PNAS},
Year = {2009},
Number = {51},
Pages = {21484--21489},
Volume = {106},
Publisher = {National Acad Sciences}
}
@Article{barber1999patterns,
Title = {{P}atterns of gene flow and population genetic structure in the canyon treefrog, \emph{Hyla arenicolor} ({C}ope)},
Author = {Barber, PAUL},
Journal = {Mol. Ecol.},
Year = {1999},
Number = {4},
Pages = {563--576},
Volume = {8},
Owner = {tim},
Publisher = {Wiley Online Library},
Timestamp = {2015.10.24}
}
@Article{Barclay1999,
Title = {{B}ats {A}re {N}ot {B}irds: {A} {C}autionary {N}ote {O}n {U}sing {E}cholocation {C}alls {T}o {I}dentify {B}ats: {A} {C}omment},
Author = {Barclay, Robert M. R.},
Journal = {J. Mammal.},
Year = {1999},
Number = {1},
Pages = {290--296},
Volume = {80},
Abstract = {Monitoring And Identifying Echolocating Bats In The Field Has Been Used Extensively For Many Years, And O'farrell Et Al. (1999) Present An Updated "Qualitative" Method For Identifying Species From Their Echolocation Calls. However, They Make The Assumption That, Like Bird Songs, Echolocation Calls Of Bats Are Species-Specific. There Is No Reason To Expect That Natural Selection Favored Incorporation Of This Information. Although Identification Of Some Species Of Bats By Their Calls Is Possible, Variation At Several Levels Makes Other Species Indistinguishable. Monitoring Echolocation In The Field And Identifying Species Can Be Useful In Determining Presence Or Absence Of Species And Factors Influencing Activity Of Bats. However, Limitations And Degree Of Reliability Of The Technique Must Be Recognized. Only By More Explicitly Defining How The Method Is Used And Quantifying Characteristics That Define Calls Of Recognizable Species Will The Method Be Scientifically Sound And Repeatable. I Suggest A Number Of Guidelines For Use Of The Method In Field Studies.},
Bdsk-url-1 = {Http://Www.Jstor.Org/Stable/1383229},
Copyright = {Copyright � 1999 American Society Of Mammalogists},
ISSN = {00222372},
Jstor_articletype = {Research-Article},
Jstor_formatteddate = {Feb., 1999},
Language = {English},
Publisher = {American Society Of Mammalogists},
Url = {Http://Www.Jstor.Org/Stable/1383229}
}
@Article{barlow2005estimates,
Title = {{E}stimates of sperm whale abundance in the northeastern temperate {P}acific from a combined acoustic and visual survey},
Author = {Barlow, J. and Taylor, B.L.},
Journal = {Mar. Mamm. Sci.},
Year = {2005},
Number = {3},
Pages = {429--445},
Volume = {21},
Doi = {10.1111/j.1748-7692.2005.tb01242.x},
Publisher = {Wiley Online Library}
}
@Article{baron2010preliminary,
Title = {{P}reliminary analysis of population genetics of \emph{Myotis punicus} ({C}hiroptera: {V}espertilionidae) in the maltese islands: implications for its conservation},
Author = {Baron, Byron and Vella, Adriana},
Journal = {Hystrix, the Italian Journal of Mammalogy},
Year = {2010},
Number = {1},
Volume = {21},
Keywords = {+fst, +ch3}
}
@Article{barrowclough1983biochemical,
Title = {{B}iochemical studies of microevolutionary processes},
Author = {Barrowclough, GF},
Journal = {Perspectives in ornithology},
Year = {1983},
Pages = {261},
Volume = {223},
Keywords = {+fst, +ch3},
Publisher = {Cambridge University Press, New York}
}
@Article{barthelemy2011spatial,
Title = {{S}patial networks},
Author = {Barth{\'e}lemy, Marc},
Journal = {Physics Reports},
Year = {2011},
Number = {1},
Pages = {1--101},
Volume = {499},
Publisher = {Elsevier}
}
@Article{barthelemy2005characterization,
Title = {{C}haracterization and modeling of weighted networks},
Author = {Barth{\'e}lemy, Marc and Barrat, Alain and Pastor-Satorras, Romualdo and Vespignani, Alessandro},
Journal = {Physica A},
Year = {2005},
Number = {1},
Pages = {34--43},
Volume = {346},
Publisher = {Elsevier}
}
@Article{barthelemy2010fluctuation,
Title = {{F}luctuation effects in metapopulation models: percolation and pandemic threshold},
Author = {Barth{\'e}lemy, Marc and Godreche, Claude and Luck, Jean-Marc},
Journal = {J. Theor. Biol.},
Year = {2010},
Number = {4},
Pages = {554--564},
Volume = {267},
Publisher = {Elsevier}
}
@Article{Bartlett1957,
Title = {{M}easles periodicity and community size.},
Author = {Bartlett, MS},
Journal = {J.\thinspace R.\thinspace Stat.\thinspace Soc.\thinspace A.},
Year = {1957},
Number = {1},
Pages = {48--70},
Volume = {120}
}
@Article{barton2007herpesvirus,
Title = {{H}erpesvirus latency confers symbiotic protection from bacterial infection},
Author = {Barton, Erik S and White, Douglas W and Cathelyn, Jason S and Brett-McClellan, Kelly A and Engle, Michael and Diamond, Michael S and Miller, Virginia L and Virgin, Herbert W},
Journal = {Nature},
Year = {2007},
Number = {7142},
Pages = {326--329},
Volume = {447},
Doi = {10.1038/nature05762},
Keywords = {+crossImmun},
Publisher = {Nature Publishing Group}
}
@Article{barton1982structure,
Title = {{T}he structure of the hybrid zone in {\emph{Uroderma bilobatum} (Chiroptera: Phyllostomatidae)}},
Author = {Barton, NH},
Journal = {Evolution},
Year = {1982},
Number = {4},
Pages = {863--866},
Volume = {36},
Publisher = {JSTOR}
}
@Article{Bayoh2003,
Title = {{Effect of temperature on the development of the aquatic stages of \emph{Anopheles gambiae} sensu stricto (Diptera : Culicidae)}},
Author = {Bayoh, MN and Lindsay, SW},
Journal = {{Bulletin of Entomological Research}},
Year = {{2003}},
Month = {{OCT}},
Number = {{5}},
Pages = {{375--381}},
Volume = {{93}},
Doi = {{10.1079/BER2003259}},
ISSN = {{0007-4853}},
Unique-id = {{ISI:000186370700001}}
}
@TechReport{bazley1976sound,
Title = {{S}ound absorption in air at frequencies up to 100 k{H}z.},
Author = {Bazley, EN},
Institution = {DTIC Document},
Year = {1976}
}
@Article{becquart2010high,
Title = {{H}igh prevalence of both humoral and cellular immunity to {Z}aire ebolavirus among rural populations in {G}abon},
Author = {Becquart, P. and Wauquier, N. and Mahlak{\~o}iv, T. and Nkoghe, D. and Padilla, C. and Souris, M. and Ollomo, B. and Gonzalez, J.P. and De Lamballerie, X. and Kazanji, M. and others},
Journal = {PLoS One},
Year = {2010},
Number = {2},
Pages = {e9126},
Volume = {5},
Publisher = {Public Library of Science}
}
@Article{begon2002clarification,
Title = {{A} clarification of transmission terms in host-microparasite models: numbers, densities and areas},
Author = {Begon, Michael and Bennett, Malcolm and Bowers, Roger G and French, Nigel P and Hazel, SM and Turner, J},
Journal = {Epidemiol. Infect.},
Year = {2002},
Number = {1},
Pages = {147--153},
Volume = {129},
doi = {10.1017/S0950268802007148},
Abstract = {Says density is weird because assumes fixed area. Number is more flexible. Density dependant and frequency dependant are acceptable. Some other stuff},
Owner = {tim},
Publisher = {Cambridge Univ Press},
Timestamp = {2016.01.26}
}
@Article{belliure2000dispersal,
Title = {{D}ispersal distances predict subspecies richness in birds},
Author = {Belliure, J and Sorci, G and M{\o}ller, AP and Clobert, J},
Journal = {J. Evol. Biol.},
Year = {2000},
Number = {3},
Pages = {480--487},
Volume = {13},
Publisher = {Wiley Online Library}
}
@Article{ben2010modeling,
Title = {{M}odeling epidemics dynamics on heterogenous networks},
Author = {Ben-Zion, Yossi and Cohen, Yahel and Shnerb, Nadav M},
Journal = {J. Theor. Biol.},
Year = {2010},
Number = {2},
Pages = {197--204},
Volume = {264},
Publisher = {Elsevier}
}
@Article{berthier2006recurrent,
Title = {{R}ecurrent replacement of mt{DNA} and cryptic hybridization between two sibling bat species \emph{Myotis myotis} and \emph{Myotis blythii}},
Author = {Berthier, Pierre and Excoffier, Laurent and Ruedi, Manuel},
Journal = {Proc. R. Soc. B},
Year = {2006},
Number = {1605},
Pages = {3101--3123},
Volume = {273},
Keywords = {+fst, +ch3},
Publisher = {The Royal Society}
}
@Article{Betts1998,
Title = {{E}ffects {O}f {I}nterindividual {V}ariation {I}n {E}cholocation {C}alls {O}n {I}dentification {O}f {B}ig {B}rown {A}nd {S}ilver-{H}aired {B}ats},
Author = {Betts, B. J.},
Journal = {Journal Of Wildlife Management},
Year = {1998},
Number = {3},