From 3fed3e3798cb7108a2d7cd565e46362be2c975c8 Mon Sep 17 00:00:00 2001 From: Mike Love Date: Tue, 9 Apr 2024 21:39:05 -0400 Subject: [PATCH] some tweaks to readme --- README.Rmd | 6 ++++-- README.md | 6 ++++-- codecov.yml | 14 -------------- pkgdown/_pkgdown.yml | 4 ++-- 4 files changed, 10 insertions(+), 20 deletions(-) delete mode 100644 codecov.yml diff --git a/README.Rmd b/README.Rmd index db14ff7..386cc6b 100644 --- a/README.Rmd +++ b/README.Rmd @@ -17,8 +17,6 @@ knitr::opts_chunk$set( [![R-CMD-check-bioc](https://github.com/tidyomics/plyranges/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/tidyomics/plyranges/actions?query=workflow%3AR-CMD-check-bioc) [![BioC status](http://www.bioconductor.org/shields/build/release/bioc/plyranges.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/plyranges) -[![Codecov test -coverage](https://codecov.io/gh/tidyomics/plyranges/branch/master/graph/badge.svg)](https://codecov.io/gh/tidyomics/plyranges?branch=master) [plyranges](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html) provides a consistent interface for importing and wrangling @@ -49,6 +47,10 @@ For a complete case-study on using plyranges to combine ATAC-seq and RNA-seq results read the [*fluentGenomics* workflow](https://tidyomics.github.io/fluentGenomics). +plyranges is part of the [tidyomics](https://github.com/tidyomics) +project, providing a `dplyr`-based interface for many types of +genomics datasets represented in Bioconductor. + # Installation [plyranges](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html) can be installed from the latest Bioconductor diff --git a/README.md b/README.md index daef97d..dfe971c 100644 --- a/README.md +++ b/README.md @@ -8,8 +8,6 @@ [![R-CMD-check-bioc](https://github.com/tidyomics/plyranges/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/tidyomics/plyranges/actions?query=workflow%3AR-CMD-check-bioc) [![BioC status](http://www.bioconductor.org/shields/build/release/bioc/plyranges.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/plyranges) -[![Codecov test -coverage](https://codecov.io/gh/tidyomics/plyranges/branch/master/graph/badge.svg)](https://codecov.io/gh/tidyomics/plyranges?branch=master) [plyranges](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html) @@ -44,6 +42,10 @@ For a complete case-study on using plyranges to combine ATAC-seq and RNA-seq results read the [*fluentGenomics* workflow](https://tidyomics.github.io/fluentGenomics). +plyranges is part of the [tidyomics](https://github.com/tidyomics) +project, providing a `dplyr`-based interface for many types of +genomics datasets represented in Bioconductor. + # Installation [plyranges](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html) diff --git a/codecov.yml b/codecov.yml deleted file mode 100644 index 04c5585..0000000 --- a/codecov.yml +++ /dev/null @@ -1,14 +0,0 @@ -comment: false - -coverage: - status: - project: - default: - target: auto - threshold: 1% - informational: true - patch: - default: - target: auto - threshold: 1% - informational: true diff --git a/pkgdown/_pkgdown.yml b/pkgdown/_pkgdown.yml index e976e2d..4f6202b 100644 --- a/pkgdown/_pkgdown.yml +++ b/pkgdown/_pkgdown.yml @@ -7,8 +7,8 @@ authors: href: http://stuartlee.org Michael Lawrence: href: https://github.com/lawremi - Di Cook: - href: http://dicook.org + Dianne Cook: + href: https://dicook.org footer: roles: [aut] sidebar: