diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..27abe3a --- /dev/null +++ b/.gitignore @@ -0,0 +1,151 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# static files generated from Django application using `collectstatic` +media +static + +.idea/ +.Rhistory +*.tar.gz +map_* +*.shp +*.pkl +*.csv diff --git a/requirements.txt b/requirements.txt index 65781fe..c6fbd45 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,15 +1,10 @@ -matplotlib==3.1.2 -dataclasses==0.7 -gpflow==2.0.0 -tensorflow==2.1.0 +tensorflow==1.8.0 numpy==1.17.4 -typing==3.6.2 -tqdm==4.40.2 -scipy==1.4.1 -pytest==5.4.1 -pytest-check==0.3.8 -scikit_learn==0.22 -tensorflow_probability==0.9.0 -yapf==0.29.0 -xlrd==1.2.0 +matplotlib==2.2.2 +tqdm==4.40.0 +setuptools==42.0.2 +gpflow==1.3.0 pandas==1.0.3 +typing==3.6.2 +scikit_learn==0.23.1 +tensorflow_probability==0.10.0 diff --git a/steingp/__init__.py b/steingp/__init__.py index 18be7df..3ed5249 100644 --- a/steingp/__init__.py +++ b/steingp/__init__.py @@ -1,4 +1,4 @@ -from .kernel import RBF, IMQ, RFF, Kernel, MaternWrapper +from .kernel import RBF, IMQ, RFF, Kernel, MaternWrapper, FourierRBF from .gp import SteinGPR, SteinSGPR, SteinMC from .svgd import SVGD, SteinSGPR, SparseSVGD from .utils import accuracy, rmse, auc, ece, write_preds, box_print, cprint