DESCRIPTION

Package: apex
Title: Phylogenetic Methods for Multiple Gene Data
Version: 1.0.6
Authors@R: c(KS=person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2941-0161")),
       TJ=person("Thibaut", "Jombart", , "t.jombart@imperial.ac.uk", role = c("aut")),
	   ZK=person("Zhian Namir", "Kamvar", email = "kamvarz@science.oregonstate.edu", role = c("aut")),
	   EA=person("Eric", "Archer", email="eric.archer@noaa.gov", role = c("aut")),
	   RH=person("Rebecca", "Harris", email="rbharris@uw.edu", role = c("aut")))
Description: Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. 
    'apex' implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes.
Depends:
    R (>= 3.1.3),
    methods,
    ape,
    phangorn
Imports:
    utils,
    graphics,
    stats,
    adegenet
License: GPL (>=2)
URL: https://github.com/thibautjombart/apex
BugReports: https://github.com/thibautjombart/apex/issues
Collate:
    doc.R
    internal.R
    multidna.class.R
    multiphyDat.class.R
    add.gaps.R
    rm.gaps.R
    show.R
    multidna.constructor.R
    multiphyDat.constructor.R
    accessors.R
    subset.R
    concatenate.R
    plot.R
    readfiles.R
    datasets.R
    dist.R
    getTree.R
    exports.R
VignetteBuilder: knitr
Suggests:
    testthat,
    knitr,
    rmarkdown
Encoding: UTF-8
RoxygenNote: 7.3.0
Roxygen: list(old_usage = TRUE)