From 9db5974c51a47e01635da2e29c6c65d72cab94d8 Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Sun, 6 Nov 2022 22:56:20 -0500 Subject: [PATCH] ENH: Migrate data to IPFS This improves reliability, addressing #395, but also the contributor experience, maintainability, and sustainability. --- .gitattributes | 2 +- .github/labeler.yml | 2 +- CMake/ExternalData.cmake | 1202 +++++++++++++++++ CMake/ExternalData_config.cmake.in | 6 + CMake/ITKSphinxExamplesExternalData.cmake | 59 +- CMake/ITKSphinxExamplesMacros.cmake | 2 +- CMakeLists.txt | 4 +- .../Build/DownloadExampleHighlighted.png.cid | 1 + .../DownloadExampleHighlighted.png.sha512 | 1 - Documentation/Build/ITK-SNAP.png.cid | 1 + Documentation/Build/ITK-SNAP.png.sha512 | 1 - Documentation/Build/ImageViewer.png.cid | 1 + Documentation/Build/ImageViewer.png.sha512 | 1 - Documentation/Build/MITK.png.cid | 1 + Documentation/Build/MITK.png.sha512 | 1 - Documentation/Build/Paraview.png.cid | 1 + Documentation/Build/Paraview.png.sha512 | 1 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100644 --- a/.gitattributes +++ b/.gitattributes @@ -12,4 +12,4 @@ # ExternalData content links must have LF newlines *.md5 crlf=input -*.sha512 crlf=input +*.cid crlf=input diff --git a/.github/labeler.yml b/.github/labeler.yml index 3a3fbe969..00e85fd53 100644 --- a/.github/labeler.yml +++ b/.github/labeler.yml @@ -83,7 +83,7 @@ type:Python notebook: type:Data: files: - - ".*.sha512" + - ".*.cid" type:Infrastructure: files: diff --git a/CMake/ExternalData.cmake b/CMake/ExternalData.cmake new file mode 100644 index 000000000..3bae8dbda --- /dev/null +++ b/CMake/ExternalData.cmake @@ -0,0 +1,1202 @@ +# Distributed under the OSI-approved BSD 3-Clause License. See accompanying +# file Copyright.txt or https://cmake.org/licensing for details. + +#[=======================================================================[.rst: +ExternalData +------------ + +.. only:: html + + .. contents:: + +Manage data files stored outside source tree + +Introduction +^^^^^^^^^^^^ + +Use this module to unambiguously reference data files stored outside +the source tree and fetch them at build time from arbitrary local and +remote content-addressed locations. Functions provided by this module +recognize arguments with the syntax ``DATA{}`` as references to +external data, replace them with full paths to local copies of those +data, and create build rules to fetch and update the local copies. + +For example: + +.. code-block:: cmake + + include(ExternalData) + set(ExternalData_URL_TEMPLATES "file:///local/%(algo)/%(hash)" + "file:////host/share/%(algo)/%(hash)" + "https://data.org/%(algo)/%(hash)") + ExternalData_Add_Test(MyData + NAME MyTest + COMMAND MyExe DATA{MyInput.png} + ) + ExternalData_Add_Target(MyData) + +When test ``MyTest`` runs the ``DATA{MyInput.png}`` argument will be +replaced by the full path to a real instance of the data file +``MyInput.png`` on disk. If the source tree contains a content link +such as ``MyInput.png.md5`` then the ``MyData`` target creates a real +``MyInput.png`` in the build tree. + +Module Functions +^^^^^^^^^^^^^^^^ + +.. command:: ExternalData_Expand_Arguments + + The ``ExternalData_Expand_Arguments`` function evaluates ``DATA{}`` + references in its arguments and constructs a new list of arguments:: + + ExternalData_Expand_Arguments( + # Name of data management target + # Output variable + [args...] # Input arguments, DATA{} allowed + ) + + It replaces each ``DATA{}`` reference in an argument with the full path of + a real data file on disk that will exist after the ```` builds. + +.. command:: ExternalData_Add_Test + + The ``ExternalData_Add_Test`` function wraps around the CMake + :command:`add_test` command but supports ``DATA{}`` references in + its arguments:: + + ExternalData_Add_Test( + # Name of data management target + ... # Arguments of add_test(), DATA{} allowed + ) + + It passes its arguments through ``ExternalData_Expand_Arguments`` and then + invokes the :command:`add_test` command using the results. + +.. command:: ExternalData_Add_Target + + The ``ExternalData_Add_Target`` function creates a custom target to + manage local instances of data files stored externally:: + + ExternalData_Add_Target( + # Name of data management target + ) + + It creates custom commands in the target as necessary to make data + files available for each ``DATA{}`` reference previously evaluated by + other functions provided by this module. + Data files may be fetched from one of the URL templates specified in + the ``ExternalData_URL_TEMPLATES`` variable, or may be found locally + in one of the paths specified in the ``ExternalData_OBJECT_STORES`` + variable. + + Typically only one target is needed to manage all external data within + a project. Call this function once at the end of configuration after + all data references have been processed. + +Module Variables +^^^^^^^^^^^^^^^^ + +The following variables configure behavior. They should be set before +calling any of the functions provided by this module. + +.. variable:: ExternalData_BINARY_ROOT + + The ``ExternalData_BINARY_ROOT`` variable may be set to the directory to + hold the real data files named by expanded ``DATA{}`` references. The + default is ``CMAKE_BINARY_DIR``. The directory layout will mirror that of + content links under ``ExternalData_SOURCE_ROOT``. + +.. variable:: ExternalData_CUSTOM_SCRIPT_ + + Specify a full path to a ``.cmake`` custom fetch script identified by + ```` in entries of the ``ExternalData_URL_TEMPLATES`` list. + See `Custom Fetch Scripts`_. + +.. variable:: ExternalData_LINK_CONTENT + + The ``ExternalData_LINK_CONTENT`` variable may be set to the name of a + supported hash algorithm to enable automatic conversion of real data + files referenced by the ``DATA{}`` syntax into content links. For each + such ```` a content link named ```` is created. The + original file is renamed to the form ``.ExternalData__`` to + stage it for future transmission to one of the locations in the list + of URL templates (by means outside the scope of this module). The + data fetch rule created for the content link will use the staged + object if it cannot be found using any URL template. + +.. variable:: ExternalData_NO_SYMLINKS + + The real data files named by expanded ``DATA{}`` references may be made + available under ``ExternalData_BINARY_ROOT`` using symbolic links on + some platforms. The ``ExternalData_NO_SYMLINKS`` variable may be set + to disable use of symbolic links and enable use of copies instead. + +.. variable:: ExternalData_OBJECT_STORES + + The ``ExternalData_OBJECT_STORES`` variable may be set to a list of local + directories that store objects using the layout ``/%(algo)/%(hash)``. + These directories will be searched first for a needed object. If the + object is not available in any store then it will be fetched remotely + using the URL templates and added to the first local store listed. If + no stores are specified the default is a location inside the build + tree. + +.. variable:: ExternalData_SERIES_PARSE + ExternalData_SERIES_PARSE_PREFIX + ExternalData_SERIES_PARSE_NUMBER + ExternalData_SERIES_PARSE_SUFFIX + ExternalData_SERIES_MATCH + + See `Referencing File Series`_. + +.. variable:: ExternalData_SOURCE_ROOT + + The ``ExternalData_SOURCE_ROOT`` variable may be set to the highest source + directory containing any path named by a ``DATA{}`` reference. The + default is ``CMAKE_SOURCE_DIR``. ``ExternalData_SOURCE_ROOT`` and + ``CMAKE_SOURCE_DIR`` must refer to directories within a single source + distribution (e.g. they come together in one tarball). + +.. variable:: ExternalData_TIMEOUT_ABSOLUTE + + The ``ExternalData_TIMEOUT_ABSOLUTE`` variable sets the download + absolute timeout, in seconds, with a default of ``300`` seconds. + Set to ``0`` to disable enforcement. + +.. variable:: ExternalData_TIMEOUT_INACTIVITY + + The ``ExternalData_TIMEOUT_INACTIVITY`` variable sets the download + inactivity timeout, in seconds, with a default of ``60`` seconds. + Set to ``0`` to disable enforcement. + +.. variable:: ExternalData_URL_ALGO__ + + Specify a custom URL component to be substituted for URL template + placeholders of the form ``%(algo:)``, where ```` is a + valid C identifier, when fetching an object referenced via hash + algorithm ````. If not defined, the default URL component + is just ```` for any ````. + +.. variable:: ExternalData_URL_TEMPLATES + + The ``ExternalData_URL_TEMPLATES`` may be set to provide a list + of URL templates using the placeholders ``%(algo)`` and ``%(hash)`` + in each template. Data fetch rules try each URL template in order + by substituting the hash algorithm name for ``%(algo)`` and the hash + value for ``%(hash)``. Alternatively one may use ``%(algo:)`` + with ``ExternalData_URL_ALGO__`` variables to gain more + flexibility in remote URLs. + +Referencing Files +^^^^^^^^^^^^^^^^^ + +Referencing Single Files +"""""""""""""""""""""""" + +The ``DATA{}`` syntax is literal and the ```` is a full or relative path +within the source tree. The source tree must contain either a real +data file at ```` or a "content link" at ```` containing a +hash of the real file using a hash algorithm corresponding to ````. +For example, the argument ``DATA{img.png}`` may be satisfied by either a +real ``img.png`` file in the current source directory or a ``img.png.md5`` +file containing its MD5 sum. + +Multiple content links of the same name with different hash algorithms +are supported (e.g. ``img.png.sha256`` and ``img.png.sha1``) so long as +they all correspond to the same real file. This allows objects to be +fetched from sources indexed by different hash algorithms. + +Referencing File Series +""""""""""""""""""""""" + +The ``DATA{}`` syntax can be told to fetch a file series using the form +``DATA{,:}``, where the ``:`` is literal. If the source tree +contains a group of files or content links named like a series then a +reference to one member adds rules to fetch all of them. Although all +members of a series are fetched, only the file originally named by the +``DATA{}`` argument is substituted for it. The default configuration +recognizes file series names ending with ``#.ext``, ``_#.ext``, ``.#.ext``, +or ``-#.ext`` where ``#`` is a sequence of decimal digits and ``.ext`` is +any single extension. Configure it with a regex that parses ```` +and ```` parts from the end of ````:: + + ExternalData_SERIES_PARSE = regex of the form ()()$ + +For more complicated cases set:: + + ExternalData_SERIES_PARSE = regex with at least two () groups + ExternalData_SERIES_PARSE_PREFIX = regex group number, if any + ExternalData_SERIES_PARSE_NUMBER = regex group number + ExternalData_SERIES_PARSE_SUFFIX = regex group number + +Configure series number matching with a regex that matches the +```` part of series members named ````:: + + ExternalData_SERIES_MATCH = regex matching in all series members + +Note that the ```` of a series does not include a hash-algorithm +extension. + +Referencing Associated Files +"""""""""""""""""""""""""""" + +The ``DATA{}`` syntax can alternatively match files associated with the +named file and contained in the same directory. Associated files may +be specified by options using the syntax +``DATA{,,,...}``. Each option may specify one file by +name or specify a regular expression to match file names using the +syntax ``REGEX:``. For example, the arguments:: + + DATA{MyData/MyInput.mhd,MyInput.img} # File pair + DATA{MyData/MyFrames00.png,REGEX:MyFrames[0-9]+\\.png} # Series + +will pass ``MyInput.mha`` and ``MyFrames00.png`` on the command line but +ensure that the associated files are present next to them. + +Referencing Directories +""""""""""""""""""""""" + +The ``DATA{}`` syntax may reference a directory using a trailing slash and +a list of associated files. The form ``DATA{/,,,...}`` +adds rules to fetch any files in the directory that match one of the +associated file options. For example, the argument +``DATA{MyDataDir/,REGEX:.*}`` will pass the full path to a ``MyDataDir`` +directory on the command line and ensure that the directory contains +files corresponding to every file or content link in the ``MyDataDir`` +source directory. In order to match associated files in subdirectories, +specify a ``RECURSE:`` option, e.g. ``DATA{MyDataDir/,RECURSE:,REGEX:.*}``. + +Hash Algorithms +^^^^^^^^^^^^^^^ + +The following hash algorithms are supported:: + + %(algo) Description + ------- ----- ----------- + MD5 .md5 Message-Digest Algorithm 5, RFC 1321 + SHA1 .sha1 US Secure Hash Algorithm 1, RFC 3174 + SHA224 .sha224 US Secure Hash Algorithms, RFC 4634 + SHA256 .sha256 US Secure Hash Algorithms, RFC 4634 + SHA384 .sha384 US Secure Hash Algorithms, RFC 4634 + SHA512 .sha512 US Secure Hash Algorithms, RFC 4634 + SHA3_224 .sha3-224 Keccak SHA-3 + SHA3_256 .sha3-256 Keccak SHA-3 + SHA3_384 .sha3-384 Keccak SHA-3 + SHA3_512 .sha3-512 Keccak SHA-3 + CID .cid Interplanetary Filesystem (IPFS) Content Identifier (CID) + +Note that the hashes are used only for unique data identification and +download verification. + +.. _`ExternalData Custom Fetch Scripts`: + +Custom Fetch Scripts +^^^^^^^^^^^^^^^^^^^^ + +When a data file must be fetched from one of the URL templates +specified in the ``ExternalData_URL_TEMPLATES`` variable, it is +normally downloaded using the :command:`file(DOWNLOAD)` command. +One may specify usage of a custom fetch script by using a URL +template of the form ``ExternalDataCustomScript:///``. +The ```` must be a C identifier, and the ```` must +contain the ``%(algo)`` and ``%(hash)`` placeholders. +A variable corresponding to the key, ``ExternalData_CUSTOM_SCRIPT_``, +must be set to the full path to a ``.cmake`` script file. The script +will be included to perform the actual fetch, and provided with +the following variables: + +.. variable:: ExternalData_CUSTOM_LOCATION + + When a custom fetch script is loaded, this variable is set to the + location part of the URL, which will contain the substituted hash + algorithm name and content hash value. + +.. variable:: ExternalData_CUSTOM_FILE + + When a custom fetch script is loaded, this variable is set to the + full path to a file in which the script must store the fetched + content. The name of the file is unspecified and should not be + interpreted in any way. + +The custom fetch script is expected to store fetched content in the +file or set a variable: + +.. variable:: ExternalData_CUSTOM_ERROR + + When a custom fetch script fails to fetch the requested content, + it must set this variable to a short one-line message describing + the reason for failure. + +#]=======================================================================] + +function(ExternalData_add_test target) + # Expand all arguments as a single string to preserve escaped semicolons. + ExternalData_expand_arguments("${target}" testArgs "${ARGN}") + add_test(${testArgs}) +endfunction() + +function(ExternalData_add_target target) + if(NOT ExternalData_URL_TEMPLATES AND NOT ExternalData_OBJECT_STORES) + message(FATAL_ERROR + "Neither ExternalData_URL_TEMPLATES nor ExternalData_OBJECT_STORES is set!") + endif() + if(NOT ExternalData_OBJECT_STORES) + set(ExternalData_OBJECT_STORES ${CMAKE_BINARY_DIR}/ExternalData/Objects) + endif() + set(_ExternalData_CONFIG_CODE "") + + # Store custom script configuration. + foreach(url_template IN LISTS ExternalData_URL_TEMPLATES) + if("${url_template}" MATCHES "^ExternalDataCustomScript://([^/]*)/(.*)$") + set(key "${CMAKE_MATCH_1}") + if(key MATCHES "^[A-Za-z_][A-Za-z0-9_]*$") + if(ExternalData_CUSTOM_SCRIPT_${key}) + if(IS_ABSOLUTE "${ExternalData_CUSTOM_SCRIPT_${key}}") + string(CONCAT _ExternalData_CONFIG_CODE "${_ExternalData_CONFIG_CODE}\n" + "set(ExternalData_CUSTOM_SCRIPT_${key} \"${ExternalData_CUSTOM_SCRIPT_${key}}\")") + else() + message(FATAL_ERROR + "No ExternalData_CUSTOM_SCRIPT_${key} is not set to a full path:\n" + " ${ExternalData_CUSTOM_SCRIPT_${key}}") + endif() + else() + message(FATAL_ERROR + "No ExternalData_CUSTOM_SCRIPT_${key} is set for URL template:\n" + " ${url_template}") + endif() + else() + message(FATAL_ERROR + "Bad ExternalDataCustomScript key '${key}' in URL template:\n" + " ${url_template}\n" + "The key must be a valid C identifier.") + endif() + endif() + + # Store custom algorithm name to URL component maps. + if("${url_template}" MATCHES "%\\(algo:([^)]*)\\)") + set(key "${CMAKE_MATCH_1}") + if(key MATCHES "^[A-Za-z_][A-Za-z0-9_]*$") + string(REPLACE "|" ";" _algos "${_ExternalData_REGEX_ALGO}") + foreach(algo ${_algos}) + if(DEFINED ExternalData_URL_ALGO_${algo}_${key}) + string(CONCAT _ExternalData_CONFIG_CODE "${_ExternalData_CONFIG_CODE}\n" + "set(ExternalData_URL_ALGO_${algo}_${key} \"${ExternalData_URL_ALGO_${algo}_${key}}\")") + endif() + endforeach() + else() + message(FATAL_ERROR + "Bad %(algo:${key}) in URL template:\n" + " ${url_template}\n" + "The transform name must be a valid C identifier.") + endif() + endif() + endforeach() + + # Store configuration for use by build-time script. + set(config ${CMAKE_CURRENT_BINARY_DIR}/${target}_config.cmake) + configure_file(${_ExternalData_SELF_DIR}/ExternalData_config.cmake.in ${config} @ONLY) + + set(files "") + + # Set a "_ExternalData_FILE_${file}" variable for each output file to avoid + # duplicate entries within this target. Set a directory property of the same + # name to avoid repeating custom commands with the same output in this directory. + # Repeating custom commands with the same output across directories or across + # targets in the same directory may be a race, but this is likely okay because + # we use atomic replacement of output files. + # + # Use local data first to prefer real files over content links. + + # Custom commands to copy or link local data. + get_property(data_local GLOBAL PROPERTY _ExternalData_${target}_LOCAL) + foreach(entry IN LISTS data_local) + string(REPLACE "|" ";" tuple "${entry}") + list(GET tuple 0 file) + list(GET tuple 1 name) + if(NOT DEFINED "_ExternalData_FILE_${file}") + set("_ExternalData_FILE_${file}" 1) + get_property(added DIRECTORY PROPERTY "_ExternalData_FILE_${file}") + if(NOT added) + set_property(DIRECTORY PROPERTY "_ExternalData_FILE_${file}" 1) + add_custom_command( + COMMENT "Generating ${file}" + OUTPUT "${file}" + COMMAND ${CMAKE_COMMAND} -Drelative_top=${CMAKE_BINARY_DIR} + -Dfile=${file} -Dname=${name} + -DExternalData_ACTION=local + -DExternalData_CONFIG=${config} + -P ${_ExternalData_SELF} + MAIN_DEPENDENCY "${name}" + ) + endif() + list(APPEND files "${file}") + endif() + endforeach() + + # Custom commands to fetch remote data. + get_property(data_fetch GLOBAL PROPERTY _ExternalData_${target}_FETCH) + foreach(entry IN LISTS data_fetch) + string(REPLACE "|" ";" tuple "${entry}") + list(GET tuple 0 file) + list(GET tuple 1 name) + list(GET tuple 2 exts) + string(REPLACE "+" ";" exts_list "${exts}") + list(GET exts_list 0 first_ext) + set(stamp "-hash-stamp") + if(NOT DEFINED "_ExternalData_FILE_${file}") + set("_ExternalData_FILE_${file}" 1) + get_property(added DIRECTORY PROPERTY "_ExternalData_FILE_${file}") + if(NOT added) + set_property(DIRECTORY PROPERTY "_ExternalData_FILE_${file}" 1) + add_custom_command( + # Users care about the data file, so hide the hash/timestamp file. + COMMENT "Generating ${file}" + # The hash/timestamp file is the output from the build perspective. + # List the real file as a second output in case it is a broken link. + # The files must be listed in this order so CMake can hide from the + # make tool that a symlink target may not be newer than the input. + OUTPUT "${file}${stamp}" "${file}" + # Run the data fetch/update script. + COMMAND ${CMAKE_COMMAND} -Drelative_top=${CMAKE_BINARY_DIR} + -Dfile=${file} -Dname=${name} -Dexts=${exts} + -DExternalData_ACTION=fetch + -DExternalData_CONFIG=${config} + -P ${_ExternalData_SELF} + # Update whenever the object hash changes. + MAIN_DEPENDENCY "${name}${first_ext}" + ) + endif() + list(APPEND files "${file}${stamp}") + endif() + endforeach() + + # Custom target to drive all update commands. + add_custom_target(${target} ALL DEPENDS ${files}) +endfunction() + +function(ExternalData_expand_arguments target outArgsVar) + # Replace DATA{} references with real arguments. + set(data_regex "DATA{([^;{}\r\n]*)}") + set(other_regex "([^D]|D[^A]|DA[^T]|DAT[^A]|DATA[^{])+|.") + set(outArgs "") + # This list expansion un-escapes semicolons in list element values so we + # must re-escape them below anywhere a new list expansion will occur. + foreach(arg IN LISTS ARGN) + if("x${arg}" MATCHES "${data_regex}") + # Re-escape in-value semicolons before expansion in foreach below. + string(REPLACE ";" "\\;" tmp "${arg}") + # Split argument into DATA{}-pieces and other pieces. + string(REGEX MATCHALL "${data_regex}|${other_regex}" pieces "${tmp}") + # Compose output argument with DATA{}-pieces replaced. + set(outArg "") + foreach(piece IN LISTS pieces) + if("x${piece}" MATCHES "^x${data_regex}$") + # Replace this DATA{}-piece with a file path. + _ExternalData_arg("${target}" "${piece}" "${CMAKE_MATCH_1}" file) + string(APPEND outArg "${file}") + else() + # No replacement needed for this piece. + string(APPEND outArg "${piece}") + endif() + endforeach() + else() + # No replacements needed in this argument. + set(outArg "${arg}") + endif() + # Re-escape in-value semicolons in resulting list. + string(REPLACE ";" "\\;" outArg "${outArg}") + list(APPEND outArgs "${outArg}") + endforeach() + set("${outArgsVar}" "${outArgs}" PARENT_SCOPE) +endfunction() + +#----------------------------------------------------------------------------- +# Private helper interface + +set(_ExternalData_REGEX_ALGO "MD5|SHA1|SHA224|SHA256|SHA384|SHA512|SHA3_224|SHA3_256|SHA3_384|SHA3_512|CID") +set(_ExternalData_REGEX_EXT "md5|sha1|sha224|sha256|sha384|sha512|sha3-224|sha3-256|sha3-384|sha3-512|cid") +set(_ExternalData_SELF "${CMAKE_CURRENT_LIST_FILE}") +get_filename_component(_ExternalData_SELF_DIR "${_ExternalData_SELF}" PATH) +set(_ExternalData_ipfs_add_flags --cid-version 1 -Q --chunker=size-1048576 --raw-leaves --cid-base=base32) + +function(_ExternalData_compute_hash var_hash algo file) + if("${algo}" STREQUAL "CID") + find_program(W3_EXECUTABLE + NAMES w3 + DOC "web3.storage CLI executable" + REQUIRED) + if(NOT W3_EXECUTABLE) + message(FATAL_ERROR "Please set W3_EXECUTABLE to the path for the w3 CLI to add ExternalData. Install with `npm i -g w3`") + endif() + get_filename_component(file_name "${file}" NAME) + execute_process(COMMAND "${W3_EXECUTABLE}" put "${file}" --no-wrap --hidden --name "${file_name}" + RESULT_VARIABLE w3_put_result + ERROR_VARIABLE w3_put_error + OUTPUT_STRIP_TRAILING_WHITESPACE + OUTPUT_VARIABLE w3_put_output) + if(NOT ${w3_put_result} EQUAL 0) + message(FATAL_ERROR "Error while calling 'w3 put': ${w3_put_error}") + endif() + string(FIND "${w3_put_output}" "https://w3s.link/ipfs/" w3s_loc) + math(EXPR cid_loc "${w3s_loc} + 22") + string(SUBSTRING "${w3_put_output}" ${cid_loc} -1 w3_cid) + set("${var_hash}" "${w3_cid}" PARENT_SCOPE) + elseif("${algo}" MATCHES "^${_ExternalData_REGEX_ALGO}$") + file("${algo}" "${file}" hash) + set("${var_hash}" "${hash}" PARENT_SCOPE) + else() + message(FATAL_ERROR "Hash algorithm ${algo} unimplemented.") + endif() +endfunction() + +function(_ExternalData_random var) + string(RANDOM LENGTH 6 random) + set("${var}" "${random}" PARENT_SCOPE) +endfunction() + +function(_ExternalData_exact_regex regex_var string) + string(REGEX REPLACE "([][+.*()^])" "\\\\\\1" regex "${string}") + set("${regex_var}" "${regex}" PARENT_SCOPE) +endfunction() + +function(_ExternalData_atomic_write file content) + _ExternalData_random(random) + set(tmp "${file}.tmp${random}") + file(WRITE "${tmp}" "${content}") + file(RENAME "${tmp}" "${file}") +endfunction() + +function(_ExternalData_link_content name var_ext) + if("${ExternalData_LINK_CONTENT}" MATCHES "^(${_ExternalData_REGEX_ALGO})$") + set(algo "${ExternalData_LINK_CONTENT}") + else() + message(FATAL_ERROR + "Unknown hash algorithm specified by ExternalData_LINK_CONTENT:\n" + " ${ExternalData_LINK_CONTENT}") + endif() + _ExternalData_compute_hash(hash "${algo}" "${name}") + get_filename_component(dir "${name}" PATH) + set(staged "${dir}/.ExternalData_${algo}_${hash}") + string(TOLOWER ".${algo}" ext) + _ExternalData_atomic_write("${name}${ext}" "${hash}\n") + file(RENAME "${name}" "${staged}") + set("${var_ext}" "${ext}" PARENT_SCOPE) + + file(RELATIVE_PATH relname "${ExternalData_SOURCE_ROOT}" "${name}${ext}") + message(STATUS "Linked ${relname} to ExternalData ${algo}/${hash}") +endfunction() + +function(_ExternalData_arg target arg options var_file) + # Separate data path from the options. + string(REPLACE "," ";" options "${options}") + list(GET options 0 data) + list(REMOVE_AT options 0) + + # Interpret trailing slashes as directories. + set(data_is_directory 0) + if("x${data}" MATCHES "^x(.*)([/\\])$") + set(data_is_directory 1) + set(data "${CMAKE_MATCH_1}") + endif() + + # Convert to full path. + if(IS_ABSOLUTE "${data}") + set(absdata "${data}") + else() + set(absdata "${CMAKE_CURRENT_SOURCE_DIR}/${data}") + endif() + get_filename_component(absdata "${absdata}" ABSOLUTE) + + # Convert to relative path under the source tree. + if(NOT ExternalData_SOURCE_ROOT) + set(ExternalData_SOURCE_ROOT "${CMAKE_SOURCE_DIR}") + endif() + set(top_src "${ExternalData_SOURCE_ROOT}") + file(RELATIVE_PATH reldata "${top_src}" "${absdata}") + if(IS_ABSOLUTE "${reldata}" OR "${reldata}" MATCHES "^\\.\\./") + message(FATAL_ERROR "Data file referenced by argument\n" + " ${arg}\n" + "does not lie under the top-level source directory\n" + " ${top_src}\n") + endif() + if(data_is_directory AND NOT IS_DIRECTORY "${top_src}/${reldata}") + message(FATAL_ERROR "Data directory referenced by argument\n" + " ${arg}\n" + "corresponds to source tree path\n" + " ${reldata}\n" + "that does not exist as a directory!") + endif() + if(NOT ExternalData_BINARY_ROOT) + set(ExternalData_BINARY_ROOT "${CMAKE_BINARY_DIR}") + endif() + set(top_bin "${ExternalData_BINARY_ROOT}") + + # Handle in-source builds gracefully. + if("${top_src}" STREQUAL "${top_bin}") + if(ExternalData_LINK_CONTENT) + message(WARNING "ExternalData_LINK_CONTENT cannot be used in-source") + set(ExternalData_LINK_CONTENT 0) + endif() + set(top_same 1) + endif() + + set(external "") # Entries external to the source tree. + set(internal "") # Entries internal to the source tree. + set(have_original ${data_is_directory}) + set(have_original_as_dir 0) + + # Process options. + set(series_option "") + set(recurse_option "") + set(associated_files "") + set(associated_regex "") + foreach(opt ${options}) + # Regular expression to match associated files. + if("x${opt}" MATCHES "^xREGEX:([^:/]+)$") + list(APPEND associated_regex "${CMAKE_MATCH_1}") + elseif(opt STREQUAL ":") + # Activate series matching. + set(series_option "${opt}") + elseif(opt STREQUAL "RECURSE:") + # Activate recursive matching in directories. + set(recurse_option "${opt}") + elseif("x${opt}" MATCHES "^[^][:/*?]+$") + # Specific associated file. + list(APPEND associated_files "${opt}") + else() + message(FATAL_ERROR "Unknown option \"${opt}\" in argument\n" + " ${arg}\n") + endif() + endforeach() + + if(series_option) + if(data_is_directory) + message(FATAL_ERROR "Series option \"${series_option}\" not allowed with directories.") + endif() + if(associated_files OR associated_regex) + message(FATAL_ERROR "Series option \"${series_option}\" not allowed with associated files.") + endif() + if(recurse_option) + message(FATAL_ERROR "Recurse option \"${recurse_option}\" allowed only with directories.") + endif() + # Load a whole file series. + _ExternalData_arg_series() + elseif(data_is_directory) + if(associated_files OR associated_regex) + # Load listed/matching associated files in the directory. + _ExternalData_arg_associated() + else() + message(FATAL_ERROR "Data directory referenced by argument\n" + " ${arg}\n" + "must list associated files.") + endif() + else() + if(recurse_option) + message(FATAL_ERROR "Recurse option \"${recurse_option}\" allowed only with directories.") + endif() + # Load the named data file. + _ExternalData_arg_single() + if(associated_files OR associated_regex) + # Load listed/matching associated files. + _ExternalData_arg_associated() + endif() + endif() + + if(NOT have_original) + if(have_original_as_dir) + set(msg_kind FATAL_ERROR) + set(msg "that is directory instead of a file!") + else() + set(msg_kind AUTHOR_WARNING) + set(msg "that does not exist as a file (with or without an extension)!") + endif() + message(${msg_kind} "Data file referenced by argument\n" + " ${arg}\n" + "corresponds to source tree path\n" + " ${reldata}\n" + "${msg}") + endif() + + if(external) + # Make the series available in the build tree. + set_property(GLOBAL APPEND PROPERTY + _ExternalData_${target}_FETCH "${external}") + set_property(GLOBAL APPEND PROPERTY + _ExternalData_${target}_LOCAL "${internal}") + set("${var_file}" "${top_bin}/${reldata}" PARENT_SCOPE) + else() + # The whole series is in the source tree. + set("${var_file}" "${top_src}/${reldata}" PARENT_SCOPE) + endif() +endfunction() + +macro(_ExternalData_arg_associated) + # Associated files lie in the same directory. + if(data_is_directory) + set(reldir "${reldata}") + else() + get_filename_component(reldir "${reldata}" PATH) + endif() + if(reldir) + string(APPEND reldir "/") + endif() + _ExternalData_exact_regex(reldir_regex "${reldir}") + if(recurse_option) + set(glob GLOB_RECURSE) + string(APPEND reldir_regex "(.+/)?") + else() + set(glob GLOB) + endif() + + # Find files named explicitly. + foreach(file ${associated_files}) + _ExternalData_exact_regex(file_regex "${file}") + _ExternalData_arg_find_files(${glob} "${reldir}${file}" + "${reldir_regex}${file_regex}") + endforeach() + + # Find files matching the given regular expressions. + set(all "") + set(sep "") + foreach(regex ${associated_regex}) + string(APPEND all "${sep}${reldir_regex}${regex}") + set(sep "|") + endforeach() + _ExternalData_arg_find_files(${glob} "${reldir}" "${all}") +endmacro() + +macro(_ExternalData_arg_single) + # Match only the named data by itself. + _ExternalData_exact_regex(data_regex "${reldata}") + _ExternalData_arg_find_files(GLOB "${reldata}" "${data_regex}") +endmacro() + +macro(_ExternalData_arg_series) + # Configure series parsing and matching. + set(series_parse_prefix "") + set(series_parse_number "\\1") + set(series_parse_suffix "\\2") + if(ExternalData_SERIES_PARSE) + if(ExternalData_SERIES_PARSE_NUMBER AND ExternalData_SERIES_PARSE_SUFFIX) + if(ExternalData_SERIES_PARSE_PREFIX) + set(series_parse_prefix "\\${ExternalData_SERIES_PARSE_PREFIX}") + endif() + set(series_parse_number "\\${ExternalData_SERIES_PARSE_NUMBER}") + set(series_parse_suffix "\\${ExternalData_SERIES_PARSE_SUFFIX}") + elseif(NOT "x${ExternalData_SERIES_PARSE}" MATCHES "^x\\([^()]*\\)\\([^()]*\\)\\$$") + message(FATAL_ERROR + "ExternalData_SERIES_PARSE is set to\n" + " ${ExternalData_SERIES_PARSE}\n" + "which is not of the form\n" + " ()()$\n" + "Fix the regular expression or set variables\n" + " ExternalData_SERIES_PARSE_PREFIX = regex group number, if any\n" + " ExternalData_SERIES_PARSE_NUMBER = regex group number\n" + " ExternalData_SERIES_PARSE_SUFFIX = regex group number\n" + ) + endif() + set(series_parse "${ExternalData_SERIES_PARSE}") + else() + set(series_parse "([0-9]*)(\\.[^./]*)$") + endif() + if(ExternalData_SERIES_MATCH) + set(series_match "${ExternalData_SERIES_MATCH}") + else() + set(series_match "[_.-]?[0-9]*") + endif() + + # Parse the base, number, and extension components of the series. + string(REGEX REPLACE "${series_parse}" "${series_parse_prefix};${series_parse_number};${series_parse_suffix}" tuple "${reldata}") + list(LENGTH tuple len) + if(NOT "${len}" EQUAL 3) + message(FATAL_ERROR "Data file referenced by argument\n" + " ${arg}\n" + "corresponds to path\n" + " ${reldata}\n" + "that does not match regular expression\n" + " ${series_parse}") + endif() + list(GET tuple 0 relbase) + list(GET tuple 2 ext) + + # Glob files that might match the series. + # Then match base, number, and extension. + _ExternalData_exact_regex(series_base "${relbase}") + _ExternalData_exact_regex(series_ext "${ext}") + _ExternalData_arg_find_files(GLOB "${relbase}*${ext}" + "${series_base}${series_match}${series_ext}") +endmacro() + +function(_ExternalData_arg_find_files glob pattern regex) + cmake_policy(PUSH) + cmake_policy(SET CMP0009 NEW) + file(${glob} globbed RELATIVE "${top_src}" "${top_src}/${pattern}*") + cmake_policy(POP) + set(externals_count -1) + foreach(entry IN LISTS globbed) + if("x${entry}" MATCHES "^x(.*)(\\.(${_ExternalData_REGEX_EXT}))$") + set(relname "${CMAKE_MATCH_1}") + set(alg "${CMAKE_MATCH_2}") + else() + set(relname "${entry}") + set(alg "") + endif() + if("x${relname}" MATCHES "^x${regex}$" # matches + AND NOT "x${relname}" MATCHES "(^x|/)\\.ExternalData_" # not staged obj + ) + if(IS_DIRECTORY "${top_src}/${entry}") + if("${relname}" STREQUAL "${reldata}") + set(have_original_as_dir 1) + endif() + else() + set(name "${top_src}/${relname}") + set(file "${top_bin}/${relname}") + if(alg) + if(NOT "${external_${externals_count}_file_name}" STREQUAL "${file}|${name}") + math(EXPR externals_count "${externals_count} + 1") + set(external_${externals_count}_file_name "${file}|${name}") + endif() + list(APPEND external_${externals_count}_algs "${alg}") + elseif(ExternalData_LINK_CONTENT) + _ExternalData_link_content("${name}" alg) + list(APPEND external "${file}|${name}|${alg}") + elseif(NOT top_same) + list(APPEND internal "${file}|${name}") + endif() + if("${relname}" STREQUAL "${reldata}") + set(have_original 1) + endif() + endif() + endif() + endforeach() + if(${externals_count} GREATER -1) + foreach(ii RANGE ${externals_count}) + string(REPLACE ";" "+" algs_delim "${external_${ii}_algs}") + list(APPEND external "${external_${ii}_file_name}|${algs_delim}") + unset(external_${ii}_algs) + unset(external_${ii}_file_name) + endforeach() + endif() + set(external "${external}" PARENT_SCOPE) + set(internal "${internal}" PARENT_SCOPE) + set(have_original "${have_original}" PARENT_SCOPE) + set(have_original_as_dir "${have_original_as_dir}" PARENT_SCOPE) +endfunction() + +#----------------------------------------------------------------------------- +# Private script mode interface + +if(CMAKE_GENERATOR OR NOT ExternalData_ACTION) + return() +endif() + +if(ExternalData_CONFIG) + include(${ExternalData_CONFIG}) +endif() +if(NOT ExternalData_URL_TEMPLATES AND NOT ExternalData_OBJECT_STORES) + message(FATAL_ERROR + "Neither ExternalData_URL_TEMPLATES nor ExternalData_OBJECT_STORES is set!") +endif() + +function(_ExternalData_link_or_copy src dst) + # Create a temporary file first. + get_filename_component(dst_dir "${dst}" PATH) + file(MAKE_DIRECTORY "${dst_dir}") + _ExternalData_random(random) + set(tmp "${dst}.tmp${random}") + if(UNIX AND NOT ExternalData_NO_SYMLINKS) + # Create a symbolic link. + set(tgt "${src}") + if(relative_top) + # Use relative path if files are close enough. + file(RELATIVE_PATH relsrc "${relative_top}" "${src}") + file(RELATIVE_PATH relfile "${relative_top}" "${dst}") + if(NOT IS_ABSOLUTE "${relsrc}" AND NOT "${relsrc}" MATCHES "^\\.\\./" AND + NOT IS_ABSOLUTE "${reldst}" AND NOT "${reldst}" MATCHES "^\\.\\./") + file(RELATIVE_PATH tgt "${dst_dir}" "${src}") + endif() + endif() + execute_process(COMMAND "${CMAKE_COMMAND}" -E create_symlink "${tgt}" "${tmp}" RESULT_VARIABLE result) + else() + # Create a copy. + execute_process(COMMAND "${CMAKE_COMMAND}" -E copy "${src}" "${tmp}" RESULT_VARIABLE result) + endif() + if(result) + file(REMOVE "${tmp}") + message(FATAL_ERROR "Failed to create\n ${tmp}\nfrom\n ${obj}") + endif() + + # Atomically create/replace the real destination. + file(RENAME "${tmp}" "${dst}") +endfunction() + +function(_ExternalData_download_file url file err_var msg_var) + set(retry 3) + while(retry) + math(EXPR retry "${retry} - 1") + if(ExternalData_TIMEOUT_INACTIVITY) + set(inactivity_timeout INACTIVITY_TIMEOUT ${ExternalData_TIMEOUT_INACTIVITY}) + elseif(NOT "${ExternalData_TIMEOUT_INACTIVITY}" EQUAL 0) + set(inactivity_timeout INACTIVITY_TIMEOUT 60) + else() + set(inactivity_timeout "") + endif() + if(ExternalData_TIMEOUT_ABSOLUTE) + set(absolute_timeout TIMEOUT ${ExternalData_TIMEOUT_ABSOLUTE}) + elseif(NOT "${ExternalData_TIMEOUT_ABSOLUTE}" EQUAL 0) + set(absolute_timeout TIMEOUT 300) + else() + set(absolute_timeout "") + endif() + file(DOWNLOAD "${url}" "${file}" STATUS status LOG log ${inactivity_timeout} ${absolute_timeout} SHOW_PROGRESS) + list(GET status 0 err) + list(GET status 1 msg) + if(err) + if("${msg}" MATCHES "HTTP response code said error" AND + "${log}" MATCHES "error: 503") + set(msg "temporarily unavailable") + endif() + elseif("${log}" MATCHES "\nHTTP[^\n]* 503") + set(err TRUE) + set(msg "temporarily unavailable") + endif() + if(NOT err OR NOT "${msg}" MATCHES "partial|timeout|temporarily") + break() + elseif(retry) + message(STATUS "[download terminated: ${msg}, retries left: ${retry}]") + endif() + endwhile() + set("${err_var}" "${err}" PARENT_SCOPE) + set("${msg_var}" "${msg}" PARENT_SCOPE) +endfunction() + +function(_ExternalData_custom_fetch key loc file err_var msg_var) + if(NOT ExternalData_CUSTOM_SCRIPT_${key}) + set(err 1) + set(msg "No ExternalData_CUSTOM_SCRIPT_${key} set!") + elseif(NOT EXISTS "${ExternalData_CUSTOM_SCRIPT_${key}}") + set(err 1) + set(msg "No '${ExternalData_CUSTOM_SCRIPT_${key}}' exists!") + else() + set(ExternalData_CUSTOM_LOCATION "${loc}") + set(ExternalData_CUSTOM_FILE "${file}") + unset(ExternalData_CUSTOM_ERROR) + include("${ExternalData_CUSTOM_SCRIPT_${key}}") + if(DEFINED ExternalData_CUSTOM_ERROR) + set(err 1) + set(msg "${ExternalData_CUSTOM_ERROR}") + else() + set(err 0) + set(msg "no error") + endif() + endif() + set("${err_var}" "${err}" PARENT_SCOPE) + set("${msg_var}" "${msg}" PARENT_SCOPE) +endfunction() + +function(_ExternalData_get_from_object_store hash algo var_obj var_success) + # Search all object stores for an existing object. + foreach(dir ${ExternalData_OBJECT_STORES}) + set(obj "${dir}/${algo}/${hash}") + if(EXISTS "${obj}") + message(STATUS "Found object: \"${obj}\"") + set("${var_obj}" "${obj}" PARENT_SCOPE) + set("${var_success}" 1 PARENT_SCOPE) + return() + endif() + endforeach() +endfunction() + +function(_ExternalData_download_object name hash algo var_obj var_success var_errorMsg) + # Search all object stores for an existing object. + set(success 1) + foreach(dir ${ExternalData_OBJECT_STORES}) + set(obj "${dir}/${algo}/${hash}") + if(EXISTS "${obj}") + message(STATUS "Found object: \"${obj}\"") + set("${var_obj}" "${obj}" PARENT_SCOPE) + set("${var_success}" "${success}" PARENT_SCOPE) + return() + endif() + endforeach() + + # Download object to the first store. + list(GET ExternalData_OBJECT_STORES 0 store) + set(obj "${store}/${algo}/${hash}") + + _ExternalData_random(random) + set(tmp "${obj}.tmp${random}") + set(found 0) + set(tried "") + foreach(url_template IN LISTS ExternalData_URL_TEMPLATES) + string(REPLACE "%(hash)" "${hash}" url_tmp "${url_template}") + string(REPLACE "%(algo)" "${algo}" url "${url_tmp}") + if(url MATCHES "^(.*)%\\(algo:([A-Za-z_][A-Za-z0-9_]*)\\)(.*)$") + set(lhs "${CMAKE_MATCH_1}") + set(key "${CMAKE_MATCH_2}") + set(rhs "${CMAKE_MATCH_3}") + if(DEFINED ExternalData_URL_ALGO_${algo}_${key}) + set(url "${lhs}${ExternalData_URL_ALGO_${algo}_${key}}${rhs}") + else() + set(url "${lhs}${algo}${rhs}") + endif() + endif() + string(REGEX REPLACE "((https?|ftp)://)([^@]+@)?(.*)" "\\1\\4" secured_url "${url}") + message(STATUS "Fetching \"${secured_url}\"") + if(url MATCHES "^ExternalDataCustomScript://([A-Za-z_][A-Za-z0-9_]*)/(.*)$") + _ExternalData_custom_fetch("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}" "${tmp}" err errMsg) + else() + _ExternalData_download_file("${url}" "${tmp}" err errMsg) + endif() + string(APPEND tried "\n ${url}") + if(err) + string(APPEND tried " (${errMsg})") + else() + # Verify downloaded object. + if("${algo}" STREQUAL "CID") + # Skip per flag options with web3.storage + # https://github.com/web3-storage/docs/issues/155 + set(found 1) + break() + find_program(IPFS_EXECUTABLE + NAMES jsipfs + DOC "Interplanetary Filesystem (IPFS) executable") + if(NOT IPFS_EXECUTABLE) + message(STATUS "Skipping ${name} download verification because IPFS_EXECUTABLE is not found.") + set(found 1) + break() + endif() + execute_process(COMMAND "${IPFS_EXECUTABLE}" add --only-hash --pin=false ${_ExternalData_ipfs_add_flags} "${tmp}" + RESULT_VARIABLE ipfs_add_result + ERROR_VARIABLE ipfs_error + OUTPUT_STRIP_TRAILING_WHITESPACE + OUTPUT_VARIABLE dl_hash) + if(NOT ${ipfs_add_result} EQUAL 0) + # Todo: Currently does not run in parallel due to the repo lock + # Bail for now. + # message(FATAL_ERROR "Error while calling 'ipfs add': ${ipfs_error}") + set(found 1) + break() + endif() + else() + _ExternalData_compute_hash(dl_hash "${algo}" "${tmp}") + endif() + if("${dl_hash}" STREQUAL "${hash}") + set(found 1) + break() + else() + string(APPEND tried " (wrong hash ${algo}=${dl_hash})") + if("$ENV{ExternalData_DEBUG_DOWNLOAD}" MATCHES ".") + file(RENAME "${tmp}" "${store}/${algo}/${dl_hash}") + endif() + endif() + endif() + file(REMOVE "${tmp}") + endforeach() + + get_filename_component(dir "${name}" PATH) + set(staged "${dir}/.ExternalData_${algo}_${hash}") + + set(success 1) + if(found) + file(RENAME "${tmp}" "${obj}") + message(STATUS "Downloaded object: \"${obj}\"") + elseif(EXISTS "${staged}") + set(obj "${staged}") + message(STATUS "Staged object: \"${obj}\"") + else() + if(NOT tried) + set(tried "\n (No ExternalData_URL_TEMPLATES given)") + endif() + set(success 0) + set("${var_errorMsg}" "Object ${algo}=${hash} not found at:${tried}" PARENT_SCOPE) + endif() + + set("${var_obj}" "${obj}" PARENT_SCOPE) + set("${var_success}" "${success}" PARENT_SCOPE) +endfunction() + +if("${ExternalData_ACTION}" STREQUAL "fetch") + foreach(v ExternalData_OBJECT_STORES file name exts) + if(NOT DEFINED "${v}") + message(FATAL_ERROR "No \"-D${v}=\" value provided!") + endif() + endforeach() + + string(REPLACE "+" ";" exts_list "${exts}") + set(succeeded 0) + set(errorMsg "") + set(hash_list ) + set(algo_list ) + set(hash ) + set(algo ) + foreach(ext ${exts_list}) + file(READ "${name}${ext}" hash) + string(STRIP "${hash}" hash) + + if("${ext}" MATCHES "^\\.(${_ExternalData_REGEX_EXT})$") + string(TOUPPER "${CMAKE_MATCH_1}" algo) + string(REPLACE "-" "_" algo "${algo}") + else() + message(FATAL_ERROR "Unknown hash algorithm extension \"${ext}\"") + endif() + + list(APPEND hash_list ${hash}) + list(APPEND algo_list ${algo}) + endforeach() + + list(LENGTH exts_list num_extensions) + math(EXPR exts_range "${num_extensions} - 1") + foreach(ii RANGE 0 ${exts_range}) + list(GET hash_list ${ii} hash) + list(GET algo_list ${ii} algo) + _ExternalData_get_from_object_store("${hash}" "${algo}" obj succeeded) + if(succeeded) + break() + endif() + endforeach() + if(NOT succeeded) + foreach(ii RANGE 0 ${exts_range}) + list(GET hash_list ${ii} hash) + list(GET algo_list ${ii} algo) + _ExternalData_download_object("${name}" "${hash}" "${algo}" + obj succeeded algoErrorMsg) + string(APPEND errorMsg "\n${algoErrorMsg}") + if(succeeded) + break() + endif() + endforeach() + endif() + if(NOT succeeded) + message(FATAL_ERROR "${errorMsg}") + endif() + # Check if file already corresponds to the object. + set(stamp "-hash-stamp") + set(file_up_to_date 0) + if(EXISTS "${file}" AND EXISTS "${file}${stamp}") + file(READ "${file}${stamp}" f_hash) + string(STRIP "${f_hash}" f_hash) + if("${f_hash}" STREQUAL "${hash}") + set(file_up_to_date 1) + endif() + endif() + + if(file_up_to_date) + # Touch the file to convince the build system it is up to date. + file(TOUCH "${file}") + else() + _ExternalData_link_or_copy("${obj}" "${file}") + endif() + + # Atomically update the hash/timestamp file to record the object referenced. + _ExternalData_atomic_write("${file}${stamp}" "${hash}\n") +elseif("${ExternalData_ACTION}" STREQUAL "local") + foreach(v file name) + if(NOT DEFINED "${v}") + message(FATAL_ERROR "No \"-D${v}=\" value provided!") + endif() + endforeach() + _ExternalData_link_or_copy("${name}" "${file}") +else() + message(FATAL_ERROR "Unknown ExternalData_ACTION=[${ExternalData_ACTION}]") +endif() diff --git a/CMake/ExternalData_config.cmake.in b/CMake/ExternalData_config.cmake.in new file mode 100644 index 000000000..18be6b31a --- /dev/null +++ b/CMake/ExternalData_config.cmake.in @@ -0,0 +1,6 @@ +set(ExternalData_OBJECT_STORES "@ExternalData_OBJECT_STORES@") +set(ExternalData_URL_TEMPLATES "@ExternalData_URL_TEMPLATES@") +set(ExternalData_TIMEOUT_INACTIVITY "@ExternalData_TIMEOUT_INACTIVITY@") +set(ExternalData_TIMEOUT_ABSOLUTE "@ExternalData_TIMEOUT_ABSOLUTE@") +set(ExternalData_NO_SYMLINKS "@ExternalData_NO_SYMLINKS@") +@_ExternalData_CONFIG_CODE@ diff --git a/CMake/ITKSphinxExamplesExternalData.cmake b/CMake/ITKSphinxExamplesExternalData.cmake index 8a74a2f60..7ec68207c 100644 --- a/CMake/ITKSphinxExamplesExternalData.cmake +++ b/CMake/ITKSphinxExamplesExternalData.cmake @@ -1,4 +1,5 @@ -include(ExternalData) +get_filename_component(_ITKExternalData_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH) +include(${_ITKExternalData_DIR}/ExternalData.cmake) if(NOT ExternalData_OBJECT_STORES) # Use ExternalData_OBJECT_STORES from environment as default. @@ -20,17 +21,59 @@ list(APPEND ExternalData_OBJECT_STORES "${CMAKE_SOURCE_DIR}/.ExternalData" ) +set(ITK_SPHINX_EXAMPLES_DATA_RELEASED_ROOT_CID bafybeicjaaz3xi2qso3kdirmy5ixoxegvfp3bm7o44ytoh6egj5m6wgeuu) +set(ExternalData_URL_ALGO_CID_lower cid) set(ExternalData_URL_TEMPLATES "" CACHE STRING "Additional URL templates for the ExternalData CMake script to look for testing data. E.g. file:///var/bigharddrive/%(algo)/%(hash)") mark_as_advanced(ExternalData_URL_TEMPLATES) -list(APPEND ExternalData_URL_TEMPLATES - # Data published on GitHub Pages - "https://insightsoftwareconsortium.github.io/ITKTestingData/%(algo)/%(hash)" +if(NOT ITK_FORBID_DOWNLOADS) + list(APPEND ExternalData_URL_TEMPLATES + # Local IPFS gateway + "http://127.0.0.1:8080/ipfs/%(hash)" - # Data published on Girder - "https://data.kitware.com:443/api/v1/file/hashsum/%(algo)/%(hash)/download" - ) + # Released data rsync'd to Kitware's Apache web server + "https://itk.org/files/ExternalData/%(algo)/%(hash)" + + # Restricted gateway with released data + "https://itk.mypinata.cloud/ipfs/${ITK_SPHINX_EXAMPLES_DATA_RELEASED_ROOT_CID}/Objects/CID/%(hash)" + + # New data on web3.storage + "https://w3s.link/ipfs/%(hash)" + + # Released data on web3.storage + "https://${ITK_SPHINX_EXAMPLES_DATA_RELEASED_ROOT_CID}.ipfs.w3s.link/Objects/CID/%(hash)" + + # Released data on estuary.tech + "https://${ITK_SPHINX_EXAMPLES_DATA_RELEASED_ROOT_CID}.ipfs.dweb.link/Objects/CID/%(hash)" + + # Gateway for arbitrary new files, uploaded to web3.storage + "https://dweb.link/ipfs/%(hash)" + + # Protocol Labs gateway + "https://ipfs.io/ipfs/%(hash)" + + # Cloudflare gateway + "https://cloudflare-ipfs.com/ipfs/%(hash)" + + # DataLad repository on gin.g-node.org + "https://gin.g-node.org/InsightSoftwareConsortium/ITKSphinxExamplesData/raw/main/Objects/CID/%(hash)" + ) +endif() # Tell ExternalData commands to transform raw files to content links. -set(ExternalData_LINK_CONTENT SHA512) +# TODO: Condition this feature on presence of our pre-commit hook. +set(ExternalData_LINK_CONTENT CID) + +# Emscripten currently has difficulty reading symlinks. +if(EMSCRIPTEN) + set(ExternalData_NO_SYMLINKS 1) +endif() + +# Match series of the form ., .. such that may +# end in a (test) number that is not part of any series numbering. +set(ExternalData_SERIES_PARSE "()(\\.[^./]*)$") +set(ExternalData_SERIES_MATCH "(\\.[0-9]+)?") + +# Sometimes we want to download very large files. +set(ExternalData_TIMEOUT_ABSOLUTE 900) diff --git a/CMake/ITKSphinxExamplesMacros.cmake b/CMake/ITKSphinxExamplesMacros.cmake index cc9cd62aa..09762ceef 100644 --- a/CMake/ITKSphinxExamplesMacros.cmake +++ b/CMake/ITKSphinxExamplesMacros.cmake @@ -113,7 +113,7 @@ function(compare_to_baseline) endif() file(GLOB baseline_image ${CMAKE_CURRENT_SOURCE_DIR}/${LOCAL_COMPARISON_EXAMPLE_NAME}/${LOCAL_COMPARISON_BASELINE_PREFIX}.*) - string(REPLACE .sha512 "" baseline_image "${baseline_image}") + string(REPLACE .cid "" baseline_image "${baseline_image}") get_filename_component(baseline_image_file "${baseline_image}" NAME) set(baseline_image "${CMAKE_CURRENT_BINARY_DIR}/${LOCAL_COMPARISON_EXAMPLE_NAME}/${baseline_image_file}") diff --git a/CMakeLists.txt b/CMakeLists.txt index 5d6a73b7e..34d0621eb 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -125,12 +125,12 @@ set(content_links) # corresponding locations in the binary tree. foreach(_dir ${_RootSubDirs}) file(GLOB_RECURSE ${_dir}_content_links - RELATIVE "${ITKSphinxExamples_SOURCE_DIR}" "${_dir}/*.sha512") + RELATIVE "${ITKSphinxExamples_SOURCE_DIR}" "${_dir}/*.cid") set(content_links ${content_links} ${${_dir}_content_links}) endforeach() foreach(link ${content_links}) - string(REGEX REPLACE "\\.sha512$" "" link ${link}) + string(REGEX REPLACE "\\.cid$" "" link ${link}) ExternalData_Expand_Arguments(ITKSphinxExamplesData link_location DATA{${link}} diff --git a/Documentation/Build/DownloadExampleHighlighted.png.cid b/Documentation/Build/DownloadExampleHighlighted.png.cid new file mode 100644 index 000000000..c335cfde0 --- /dev/null +++ b/Documentation/Build/DownloadExampleHighlighted.png.cid @@ -0,0 +1 @@ +bafkreihapw3rzwmabx6k4kdwqi4feovykoxceoqfhksxbowd6odj5qdvpu diff --git a/Documentation/Build/DownloadExampleHighlighted.png.sha512 b/Documentation/Build/DownloadExampleHighlighted.png.sha512 deleted file mode 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b/Utilities/CreateDownloadableArchive.py index 4c547a870..2455cfc70 100755 --- a/Utilities/CreateDownloadableArchive.py +++ b/Utilities/CreateDownloadableArchive.py @@ -43,7 +43,6 @@ for path in files_to_copy_to_html_output: shutil.copy2(path, html_output_dir) - # archives for users to download from the website. files_for_archive = files_to_copy_to_html_output @@ -66,9 +65,9 @@ files_for_archive = files_for_archive[1:] files_for_archive.append(archive_cmakelist) -inputs = glob.glob(os.path.join(example_dir, "*.sha512")) +inputs = glob.glob(os.path.join(example_dir, "*.cid")) for path in inputs: - files_for_archive.append(path[:-7]) + files_for_archive.append(path[:-4]) # Remove duplicates. files_for_archive = set(files_for_archive) diff --git a/src/Bridge/NumPy/ConvertNumPyArrayToitkImage/Slice.png.cid b/src/Bridge/NumPy/ConvertNumPyArrayToitkImage/Slice.png.cid new file mode 100644 index 000000000..6e9af1c33 --- /dev/null +++ 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