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Issues list

Test CCA integration with scib
#419 opened Sep 25, 2024 by mairamirza updated Oct 28, 2024
Graph iLISI gives a super low score for well-integrated data
#418 opened Sep 8, 2024 by dariotommasini updated Sep 8, 2024
Incosistent usage of adata.copy() argument in integration.py
#417 opened Sep 5, 2024 by vondoRishi updated Sep 5, 2024
export the benchmarking table resuls as pdf
#416 opened Sep 5, 2024 by mohamednhassan updated Sep 5, 2024
kBET metrics does not work with scipy==1.14.0
#412 opened Jul 18, 2024 by kollo97 updated Sep 4, 2024
Lisi Installation Failed
#413 opened Jul 23, 2024 by rdshrestha updated Jul 30, 2024
Computing Metrics on Seurat Objects
#411 opened Jul 9, 2024 by VishD17 updated Jul 9, 2024
scanorama does not subset to HVG list
#382 opened Apr 27, 2023 by mbuttner updated Apr 30, 2024
Incosistent usage of hvg argument in integration.py
#318 opened May 22, 2022 by adamgayoso updated Apr 30, 2024
Questions about the weighted score design of scIB
#391 opened Dec 2, 2023 by HelloWorldLTY updated Mar 31, 2024
how to merge and integrate the TPM and raw counts matrix data
#387 opened Sep 11, 2023 by Teich2233 updated Mar 31, 2024
scib.metrics.metrics returns all NaN
#400 opened Mar 21, 2024 by Jiayi-Zheng updated Mar 21, 2024
Metrics fail when there are unused labels
#379 opened Mar 1, 2023 by lazappi updated Jan 18, 2024
mertric about ASW
#392 opened Dec 8, 2023 by BillyChen123 updated Dec 8, 2023
use_rep in cluster_optimal_resolution and opt_louvain
#389 opened Nov 5, 2023 by kzkedzierska updated Nov 5, 2023
AttributeError: can't set attribute 'categories'
#388 opened Oct 29, 2023 by BillyChen123 updated Oct 29, 2023
Running scib.metrics.metrics() produces dataframe of NaNs
#385 opened Jun 15, 2023 by EvanDMee updated Jul 14, 2023
Comparing metrics from different embeddings
#384 opened Jun 9, 2023 by samfenske updated Jun 9, 2023
Possibility to report the cLISI score for each cluster?
#383 opened May 25, 2023 by auesro updated May 25, 2023
Low values for iLISI score
#329 opened Jul 19, 2022 by Mari123i updated Feb 13, 2023
Update integration methods
#363 opened Jan 9, 2023 by mumichae updated Jan 9, 2023
2 tasks
cell_cycle returns poor scores on perfect data input
#351 opened Nov 29, 2022 by scottgigante-immunai updated Dec 4, 2022
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