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Graph iLISI gives a super low score for well-integrated data
#418
opened Sep 8, 2024 by
dariotommasini
updated Sep 8, 2024
Incosistent usage of adata.copy() argument in integration.py
#417
opened Sep 5, 2024 by
vondoRishi
updated Sep 5, 2024
export the benchmarking table resuls as pdf
#416
opened Sep 5, 2024 by
mohamednhassan
updated Sep 5, 2024
kBET metrics does not work with scipy==1.14.0
#412
opened Jul 18, 2024 by
kollo97
updated Sep 4, 2024
Incosistent usage of hvg argument in integration.py
#318
opened May 22, 2022 by
adamgayoso
updated Apr 30, 2024
Questions about the weighted score design of scIB
#391
opened Dec 2, 2023 by
HelloWorldLTY
updated Mar 31, 2024
how to merge and integrate the TPM and raw counts matrix data
#387
opened Sep 11, 2023 by
Teich2233
updated Mar 31, 2024
Question on Benchmarking Cell Type Assignments Post-Integration and Concerns about Bias in Results
#393
opened Dec 28, 2023 by
MariaRosariaNucera
updated Mar 26, 2024
Can "Scib" evaluate the integration functionality of Seurat v5 ?
#397
opened Feb 1, 2024 by
zhangmiaomiao379
updated Feb 1, 2024
use_rep in cluster_optimal_resolution and opt_louvain
#389
opened Nov 5, 2023 by
kzkedzierska
updated Nov 5, 2023
AttributeError: can't set attribute 'categories'
#388
opened Oct 29, 2023 by
BillyChen123
updated Oct 29, 2023
Running scib.metrics.metrics() produces dataframe of NaNs
#385
opened Jun 15, 2023 by
EvanDMee
updated Jul 14, 2023
Comparing metrics from different embeddings
#384
opened Jun 9, 2023 by
samfenske
updated Jun 9, 2023
Possibility to report the cLISI score for each cluster?
#383
opened May 25, 2023 by
auesro
updated May 25, 2023
Which type of data Improvements or additions to documentation
anndata
layers need to comprise to run scib.me.metrics_fast() depending on the integration method used?
documentation
#300
opened Apr 18, 2022 by
antonioggsousa
updated Dec 20, 2022
cell_cycle
returns poor scores on perfect data input
#351
opened Nov 29, 2022 by
scottgigante-immunai
updated Dec 4, 2022
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