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Invalid CIGAR char N #93

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yinxy1992 opened this issue Oct 30, 2023 · 0 comments
Open

Invalid CIGAR char N #93

yinxy1992 opened this issue Oct 30, 2023 · 0 comments

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@yinxy1992
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I was running HipSTR with the sorted and indexed bam file, but encounter the error " Invalid CIGAR char N". After checking the cpp code, it was found that HipSTR does not deal with the CIGAR character "N", any suggestions?
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@yinxy1992