Files

GWAS_helpers

John Lees

Fix field separator

Dec 8, 2014

c9dc3b3 · Dec 8, 2014

This branch is 145 commits behind johnlees/bioinformatics:master.

Name		Name	Last commit message	Last commit date
parent directory ..
array_ref_sample_name.pl		array_ref_sample_name.pl	Improved behaviour of missing gender in opticall to tped	Jun 10, 2014
bed_to_gen.pl		bed_to_gen.pl	bed_to_gen.pl: Converts between a single bed to zipped .gen and .samp…	Jun 16, 2014
cat_gen.pl		cat_gen.pl	impute2-pipeline: fixes. cat_gen: concat impute2 output minimising di…	Jun 26, 2014
generate_opticall_info.pl		generate_opticall_info.pl	Added script that generates .info files for opticall	May 28, 2014
impute2-pipeline.pl		impute2-pipeline.pl	Input g file is gzipped	Nov 20, 2014
info_qc.pl		info_qc.pl	Fix field separator	Dec 8, 2014
plot_intensity.pl		plot_intensity.pl	Update usage of plot_intensity.pl	Aug 19, 2014
qctool_rename.pl		qctool_rename.pl	Add script to rename impute2 output chunks over 22 to be concated by …	Jul 24, 2014
run_ancestry_qc.pl		run_ancestry_qc.pl	Add perl script to remove samples with divergent ancestry	Jul 24, 2014
run_kinship_qc.pl		run_kinship_qc.pl	Add perl script to remove samples with divergent ancestry	Jul 24, 2014
run_missing_qc.pl		run_missing_qc.pl	run_missing_qc.pl: Writes any samples with outlying missing or hetero…	Jun 16, 2014
significant_snps.pl		significant_snps.pl	Add script to extract genome wide significant snps	Aug 1, 2014
strand_flip_to_ref.pl		strand_flip_to_ref.pl	Update strand flipping scripts - one to merge to typing on TOP snps, …	Jun 13, 2014
strand_flip_to_typed.pl		strand_flip_to_typed.pl	Update strand flipping scripts - one to merge to typing on TOP snps, …	Jun 13, 2014
tped_to_bed.pl		tped_to_bed.pl	Add tped to bed helper script	Jun 9, 2014