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Germline mutations from IMPACT maf needs to be filtered out before the run #11

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ShwetaCh opened this issue Apr 7, 2020 · 0 comments
Open

Germline mutations from IMPACT maf needs to be filtered out before the run #11

ShwetaCh opened this issue Apr 7, 2020 · 0 comments

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@ShwetaCh
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ShwetaCh commented Apr 7, 2020

This is not a bug per se, but a preferred setting considering the IMPACT input maf that we use contains germline mutations. So we will have to explicitly exclude it from the input to the neo pipeline using Mutation_Status != "GERMLINE". Currently, all mutations are included.
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@ShwetaCh