From 156057f252c6ea1dd18b0d1f1e39877d21492539 Mon Sep 17 00:00:00 2001 From: jayantbhakar Date: Wed, 10 Aug 2022 23:02:11 +0530 Subject: [PATCH 1/8] added docs for packet visualization --- docs/io/visualization/index.rst | 1 + .../montecarlo_packet_visualization.ipynb | 62673 ++++++++++++++++ 2 files changed, 62674 insertions(+) create mode 100644 docs/io/visualization/montecarlo_packet_visualization.ipynb diff --git a/docs/io/visualization/index.rst b/docs/io/visualization/index.rst index bb16a845310..3d200d07917 100644 --- a/docs/io/visualization/index.rst +++ b/docs/io/visualization/index.rst @@ -14,6 +14,7 @@ diagnostic visualizations. sdec_plot convergence_plot + montecarlo_packet_visualization TARDIS Widgets (Graphical User Interfaces) diff --git a/docs/io/visualization/montecarlo_packet_visualization.ipynb b/docs/io/visualization/montecarlo_packet_visualization.ipynb new file mode 100644 index 00000000000..c8ca0fcbae3 --- /dev/null +++ b/docs/io/visualization/montecarlo_packet_visualization.ipynb @@ -0,0 +1,62673 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### 2D Packet Visualization_ Single Packet_Plotly ###" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "metadata": {}, + "outputs": [], + "source": [ + "from tardis import run_tardis\n", + "from tardis.io.config_reader import Configuration" + ] + }, + { + "cell_type": "code", + "execution_count": 21, + "metadata": {}, + "outputs": [], + "source": [ + "# Reading the Configuration stored in `tardis_example.yml` into config\n", + "\n", + "config = Configuration.from_yaml(\"tardis_example.yml\")" + ] + }, + { + "cell_type": "code", + "execution_count": 22, + "metadata": {}, + "outputs": [], + "source": [ + "# changing config file for plotting 15 packets\n", + "\n", + "config[\"montecarlo\"][\"tracking\"][\"track_rpacket\"]=True\n", + "config[\"montecarlo\"][\"seed\"]= 457\n", + "config[\"montecarlo\"][\"no_of_packets\"]=10\n", + "config[\"montecarlo\"][\"iterations\"]=1\n", + "config[\"montecarlo\"][\"last_no_of_packets\"]=15\n", + "config[\"montecarlo\"][\"no_of_virtual_packets\"]=3" + ] + }, + { + "cell_type": "code", + "execution_count": 23, + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[\u001b[1mtardis.plasma.standard_plasmas\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\t\n", + "\tReading Atomic Data from kurucz_cd23_chianti_H_He.h5 (\u001b[1mstandard_plasmas.py\u001b[0m:93)\n", + "[\u001b[1mtardis.io.atom_data.util\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\t\n", + "\tAtom Data kurucz_cd23_chianti_H_He.h5 not found in local path.\n", + "\tExists in TARDIS Data repo /home/jayant/Downloads/tardis-data/kurucz_cd23_chianti_H_He.h5 (\u001b[1mutil.py\u001b[0m:33)\n", + "[\u001b[1mtardis.io.atom_data.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\tReading Atom Data with: UUID = 6f7b09e887a311e7a06b246e96350010 MD5 = 864f1753714343c41f99cb065710cace (\u001b[1mbase.py\u001b[0m:249)\n", + "[\u001b[1mtardis.io.atom_data.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\tNon provided Atomic Data: synpp_refs, photoionization_data, yg_data, two_photon_data (\u001b[1mbase.py\u001b[0m:253)\n", + "[\u001b[1mpy.warnings \u001b[0m][\u001b[1;33mWARNING\u001b[0m] \n", + "\t/home/jayant/Desktop/tardis/tardis/plasma/properties/radiative_properties.py:93: RuntimeWarning:\n", + "\n", + "invalid value encountered in true_divide\n", + "\n", + " (\u001b[1mwarnings.py\u001b[0m:109)\n", + "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\t\n", + "\tStarting iteration 1 of 1 (\u001b[1mbase.py\u001b[0m:381)\n", + "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\t\n", + "\tLuminosity emitted = 7.917e+42 erg / s\n", + "\tLuminosity absorbed = 2.754e+42 erg / s\n", + "\tLuminosity requested = 1.059e+43 erg / s\n", + " (\u001b[1mbase.py\u001b[0m:555)\n", + "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", + "\t\n", + "\tSimulation finished in 1 iterations \n", + "\tSimulation took 0.03 s\n", + " (\u001b[1mbase.py\u001b[0m:476)\n" + ] + } + ], + "source": [ + "sim = run_tardis(config, show_progress_bars=False)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "
\n", + " \n", + "Note\n", + "\n", + "When running this notebook locally or in interactive mode, a [convergence plot](io/visualization/convergence_plot.ipynb) will show up.\n", + "\n", + "
" + ] + }, + { + "cell_type": "code", + "execution_count": 24, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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" + ], + "text/plain": [ + " status seed r nu mu \\\n", + "index step \n", + "0 0 0 1198907283 1.235520e+15 1.550353e+14 0.494472 \n", + " 1 0 1198907283 1.286064e+15 1.550353e+14 0.550200 \n", + " 2 0 1198907283 1.336608e+15 1.550353e+14 0.595364 \n", + " 3 0 1198907283 1.387152e+15 1.550353e+14 0.632965 \n", + " 4 0 1198907283 1.437696e+15 1.550353e+14 0.664865 \n", + "... ... ... ... ... ... \n", + "14 16 0 1951128961 2.044224e+15 6.232667e+14 0.921115 \n", + " 17 0 1951128961 2.094768e+15 6.232667e+14 0.925028 \n", + " 18 0 1951128961 2.145312e+15 6.232667e+14 0.928654 \n", + " 19 0 1951128961 2.195856e+15 6.232667e+14 0.932019 \n", + " 20 1 1951128961 2.246400e+15 6.232667e+14 0.935149 \n", + "\n", + " energy shell_id interaction_type \n", + "index step \n", + "0 0 0.067899 0 -1 \n", + " 1 0.067899 1 -1 \n", + " 2 0.067899 2 -1 \n", + " 3 0.067899 3 -1 \n", + " 4 0.067899 4 -1 \n", + "... ... ... ... \n", + "14 16 0.068592 16 -1 \n", + " 17 0.068592 17 -1 \n", + " 18 0.068592 18 -1 \n", + " 19 0.068592 19 -1 \n", + " 20 0.068592 19 -1 \n", + "\n", + "[259 rows x 8 columns]" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# accessing the rpacket_tracker dataframe\n", + "sim.runner.rpacket_tracker_df" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Plotly plots ####" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [], + "source": [ + "import plotly.express as px\n", + "import plotly.graph_objects as go\n", + "import math\n", + "import pandas as pd\n", + "import numpy as np\n", + "import random" + ] + }, + { + "attachments": { + "packet_diagram.jpg": { + "image/jpeg": 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+ } + }, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Mathematical expression for finding coordinates ###\n", + "\n", + "\\\n", + "\n", + "\n", + "

The diagram above shows the packet trajectory as it starts from photosphere `P0` and continues to move along the subsequent points `P1`, `P2` and so on.\n", + "\n", + "
\n", + " Note:
\n", + " Here μ is the angle of direction of packet propagation with respect to line joining the center.\n", + "
\n", + "\n", + "To determine the polar coordinates of any arbitrary point, let say `P2`, we need `r2` and `θ2`. `r2` is already present in the array obtained from the simulation. To determine `θ2`, we use sine rule and apply it on triangle `OP1P2`, where `O` is the center.\n", + "\n", + "$$\n", + "\\frac{r_{2}}{\\sin(\\pi - \\mu_{1})} = \\frac{r_{1}}{\\sin(\\alpha)}\n", + "$$\n", + "\n", + "Now, writing `α` in terms of `μ1` and `θ2`\n", + "\n", + "$$ \n", + "α = μ_{1} - θ_{2} \\\\ \\\\\n", + "\\frac{r_{2}}{\\sin(\\pi - \\mu_{1})} = \\frac{r_{1}}{\\sin(μ_{1} - θ_{2})}\n", + "$$\n", + "\n", + "Thus,\n", + "\n", + "$$ \n", + "θ_{2} = -\\sin^{-1}(\\frac{r1}{r2}\\sin(\\mu_{1})) + \\mu_{1}\n", + "$$\n", + "\n", + "Hence, for `ith` point, `θ` will be:\n", + "\n", + "$$ \n", + "θ_{i} = -\\sin^{-1}(\\frac{r_{i-1}}{r_{i}}\\sin(\\mu_{i-1})) + \\mu_{i-1}\n", + "$$" + ] + }, + { + "cell_type": "code", + "execution_count": 26, + "metadata": {}, + "outputs": [], + "source": [ + "# function for getting x y coordinates and interactions for a packet\n", + "def get_x_y_ints_with_theta_init(r_track,mu_track,time,last_interaction_type,direction=\"normal\",theta_initial=0):\n", + " xs,ys,theta,ints = [],[],[],[]\n", + " \n", + " for i in range(len(r_track)):\n", + " if(i==0):\n", + " theta.append(theta_initial)\n", + " else:\n", + " if(direction == 'random' or direction == 'r'):\n", + " multiplier = random.choice([-1,1])\n", + " elif(direction == 'opposite' or direction == 'o'):\n", + " multiplier = -1\n", + " else:\n", + " multiplier = 1\n", + " if (r_track[i]X: %{x}
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" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "# animated plot\n", + "\n", + "v_shells = sim.model.radius.value * 1e-5 / sim.model.time_explosion.value\n", + "xs,ys,ints = get_coordinates_multiple_packets_ints(sim.runner.rpacket_tracker_df,sim.model.time_explosion.value)\n", + "xs,ys,ints,max_size = get_equal_array_size(xs,ys,ints)\n", + "\n", + "fig = go.Figure()\n", + "\n", + "# Set axes properties\n", + "fig.update_xaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"velocity (km/s)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", + "fig.update_yaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"velocity (km/s)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", + "\n", + "# adding the shells\n", + "shell_shapes={}\n", + "for i in range(len(sim.model.radius.value)-2,-2,-1):\n", + " if i==0:\n", + " fig.add_shape(type=\"circle\",\n", + " xref=\"x\", yref=\"y\",\n", + " x0=-1*v_shells[i], y0=-1*v_shells[i], x1=v_shells[i], y1=v_shells[i],\n", + " line_color=\"black\",\n", + " fillcolor=\"darkgrey\",\n", + " opacity=1\n", + " )\n", + " elif i==(len(sim.model.radius.value)-1):\n", + " fig.add_shape(type=\"circle\",\n", + " xref=\"x\", yref=\"y\",\n", + " x0=-1*v_shells[i], y0=-1*v_shells[i], x1=v_shells[i], y1=v_shells[i],\n", + " line_color=\"black\",\n", + " opacity=1\n", + " )\n", + " else:\n", + " fig.add_shape(type=\"circle\",\n", + " xref=\"x\", yref=\"y\",\n", + " x0=-1*v_shells[i], y0=-1*v_shells[i], x1=v_shells[i], y1=v_shells[i],\n", + " line_color=\"black\",\n", + " opacity=0.1\n", + " )\n", + "\n", + "#Add the packet trajectory\n", + "\n", + "df = sim.runner.rpacket_tracker_df\n", + "interaction_from_num = {0: \"No Interaction\", 1: \"EScattering\", 2: \"Line\"}\n", + "interaction_color_from_num = {0: \"darkslategrey\", 1: \"#3366FF\", 2: \"#FF3300\"}\n", + "interaction_opacity_from_num = {0: 0, 1: 1, 2: 1}\n", + "\n", + "for i in range(len(xs)):\n", + " fig.add_trace(go.Scatter(\n", + " x=xs[i],\n", + " y=ys[i],\n", + " mode=\"markers+lines\",\n", + " name=\"Packet \"+str(i+1),\n", + " showlegend=False,\n", + " hovertemplate =\n", + " 'X: %{x}'+\n", + " '
Y: %{y}
'+\n", + " 'Last Interaction: %{text}',\n", + " text = [interaction_from_num.get(ints[i][j]) for j in range(len(xs[i]))],\n", + " line = dict(color=\"darkslategrey\"),\n", + "# line_shape = \"spline\",\n", + " marker = dict(opacity = [interaction_opacity_from_num.get(ints[i][j]) for j in range(len(xs[i]))],color=[interaction_color_from_num.get(ints[i][j]) for j in range(len(xs[i]))])\n", + " ))\n", + "\n", + "#adding legends\n", + "fig.add_trace(go.Scatter(\n", + " x=[9999999],\n", + " y=[0],\n", + " legendgroup=\"a\",\n", + " opacity=1,\n", + " legendgrouptitle=dict(font=dict(color=\"#444\"),text=\"Interaction Type:\"),\n", + " mode=\"lines+markers\",\n", + " name=\"Escattering\",\n", + " hoverlabel=dict(font=dict(color=\"#222\")),\n", + " marker = dict(color=\"#3366FF\"),\n", + "))\n", + "fig.add_trace(go.Scatter(\n", + " x=[9999999],\n", + " y=[0],\n", + " legendgroup=\"a\",\n", + " opacity=1,\n", + " mode=\"lines+markers\",\n", + " name=\"Line\",\n", + " marker = dict(color=\"#FF3300\"),\n", + "))\n", + "\n", + "\n", + "# Set figure size\n", + "fig.layout.plot_bgcolor = '#fafafa'\n", + "fig.layout.paper_bgcolor = '#fafafa'\n", + "\n", + "fig.update_layout(width=900, height=900,\n", + " title=\"Packet Trajectories\",\n", + " title_font_color=\"#444\",\n", + " updatemenus=[dict(type=\"buttons\",\n", + " pad=dict(t=750),\n", + " buttons=[dict(label=\"Play\",\n", + " method=\"animate\",\n", + " args=[None])])])\n", + "\n", + "# creating frames for animation\n", + "def get_frames(l):\n", + " frames=[]\n", + " for i in range(len(xs)):\n", + " frames.append(go.Scatter(\n", + " x=xs[i].tolist()[0:l],\n", + " y=ys[i].tolist()[0:l],\n", + " mode=\"markers+lines\",\n", + " name=\"Packet \"+str(i+1),\n", + " showlegend=False,\n", + " hovertemplate =\n", + " 'X: %{x}'+\n", + " '
Y: %{y}
'+\n", + " 'Last Interaction: %{text}',\n", + " text = [interaction_from_num.get(ints[i][j]) for j in range(len(xs[i]))],\n", + " line = dict(color=\"darkslategrey\"),\n", + " # line_shape = \"spline\",\n", + " marker = dict(opacity = [interaction_opacity_from_num.get(ints[i][j]) for j in range(len(xs[i]))],color=[interaction_color_from_num.get(ints[i][j]) for j in range(len(xs[i]))])\n", + " ))\n", + " return frames\n", + " \n", + "fig.frames=[go.Frame(data=get_frames(i)) for i in range(max_size+1)]\n", + "\n", + "fig.show()" + ] + } + ], + "metadata": { + "interpreter": { + "hash": "6890d83cfa6c65bebc4bd449872c06a268510d8b8ae8c923ce6786e6c4796836" + }, + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.13" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} From ee7154cddbe187e135e0a38302d58ce5772d61ed Mon Sep 17 00:00:00 2001 From: jayantbhakar Date: Thu, 11 Aug 2022 16:47:43 +0530 Subject: [PATCH 2/8] made requested changes to the notebook --- .../montecarlo_packet_visualization.ipynb | 53 ++++++------------- 1 file changed, 16 insertions(+), 37 deletions(-) diff --git a/docs/io/visualization/montecarlo_packet_visualization.ipynb b/docs/io/visualization/montecarlo_packet_visualization.ipynb index c8ca0fcbae3..4104a1b0fa8 100644 --- a/docs/io/visualization/montecarlo_packet_visualization.ipynb +++ b/docs/io/visualization/montecarlo_packet_visualization.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "### 2D Packet Visualization_ Single Packet_Plotly ###" + "### Montecarlo Packet Visualization" ] }, { @@ -14,7 +14,13 @@ "outputs": [], "source": [ "from tardis import run_tardis\n", - "from tardis.io.config_reader import Configuration" + "from tardis.io.config_reader import Configuration\n", + "import plotly.express as px\n", + "import plotly.graph_objects as go\n", + "import math\n", + "import pandas as pd\n", + "import numpy as np\n", + "import random" ] }, { @@ -93,19 +99,6 @@ "sim = run_tardis(config, show_progress_bars=False)" ] }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "
\n", - " \n", - "Note\n", - "\n", - "When running this notebook locally or in interactive mode, a [convergence plot](io/visualization/convergence_plot.ipynb) will show up.\n", - "\n", - "
" - ] - }, { "cell_type": "code", "execution_count": 24, @@ -327,27 +320,6 @@ "sim.runner.rpacket_tracker_df" ] }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "#### Plotly plots ####" - ] - }, - { - "cell_type": "code", - "execution_count": 25, - "metadata": {}, - "outputs": [], - "source": [ - "import plotly.express as px\n", - "import plotly.graph_objects as go\n", - "import math\n", - "import pandas as pd\n", - "import numpy as np\n", - "import random" - ] - }, { "attachments": { "packet_diagram.jpg": { @@ -357,7 +329,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "### Mathematical expression for finding coordinates ###\n", + "### Finding packet coordinates\n", "\n", "\\\n", "\n", @@ -474,6 +446,13 @@ " return xs,ys,ints,max_size" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## " + ] + }, { "cell_type": "code", "execution_count": 40, From 2a536680d6630c6b14b423ccf008db6e514a1826 Mon Sep 17 00:00:00 2001 From: jayantbhakar Date: Thu, 11 Aug 2022 17:03:22 +0530 Subject: [PATCH 3/8] changed plot size --- .../montecarlo_packet_visualization.ipynb | 42 +++++++++---------- 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/docs/io/visualization/montecarlo_packet_visualization.ipynb b/docs/io/visualization/montecarlo_packet_visualization.ipynb index 4104a1b0fa8..e2408542864 100644 --- a/docs/io/visualization/montecarlo_packet_visualization.ipynb +++ b/docs/io/visualization/montecarlo_packet_visualization.ipynb @@ -4,12 +4,12 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "### Montecarlo Packet Visualization" + "# Montecarlo Packet Visualization" ] }, { "cell_type": "code", - "execution_count": 20, + "execution_count": 11, "metadata": {}, "outputs": [], "source": [ @@ -25,7 +25,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": 12, "metadata": {}, "outputs": [], "source": [ @@ -36,7 +36,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 13, "metadata": {}, "outputs": [], "source": [ @@ -52,7 +52,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": 14, "metadata": { "scrolled": true }, @@ -90,7 +90,7 @@ "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m ] \n", "\t\n", "\tSimulation finished in 1 iterations \n", - "\tSimulation took 0.03 s\n", + "\tSimulation took 0.05 s\n", " (\u001b[1mbase.py\u001b[0m:476)\n" ] } @@ -101,7 +101,7 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": 15, "metadata": {}, "outputs": [ { @@ -310,7 +310,7 @@ "[259 rows x 8 columns]" ] }, - "execution_count": 24, + "execution_count": 15, "metadata": {}, "output_type": "execute_result" } @@ -329,7 +329,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "### Finding packet coordinates\n", + "## Finding packet coordinates\n", "\n", "\\\n", "\n", @@ -369,7 +369,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": 16, "metadata": {}, "outputs": [], "source": [ @@ -412,7 +412,7 @@ }, { "cell_type": "code", - "execution_count": 37, + "execution_count": 17, "metadata": {}, "outputs": [], "source": [ @@ -432,7 +432,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": 18, "metadata": {}, "outputs": [], "source": [ @@ -450,12 +450,12 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "## " + "## Plotting Packet Trajectories" ] }, { "cell_type": "code", - "execution_count": 40, + "execution_count": 25, "metadata": {}, "outputs": [ { @@ -61318,7 +61318,7 @@ } ], "layout": { - "height": 900, + "height": 850, "paper_bgcolor": "#fafafa", "plot_bgcolor": "#fafafa", "shapes": [ @@ -62436,7 +62436,7 @@ "type": "buttons" } ], - "width": 900, + "width": 850, "xaxis": { "exponentformat": "none", "gridcolor": "#fafafa", @@ -62466,11 +62466,11 @@ } }, "text/html": [ - "
\n", + " " + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "
\n", - " " - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "text/html": [ - "
" - ] - }, - "metadata": {}, - "output_type": "display_data" - } - ], + "outputs": [], "source": [ "# animated plot\n", "\n", From 9c7f4f254be6f64510be0eece14f8e58efe25ab8 Mon Sep 17 00:00:00 2001 From: jayantbhakar Date: Fri, 12 Aug 2022 15:55:44 +0530 Subject: [PATCH 7/8] added introduction --- .../montecarlo_packet_visualization.ipynb | 15 +++++++++++++-- 1 file changed, 13 insertions(+), 2 deletions(-) diff --git a/docs/io/visualization/montecarlo_packet_visualization.ipynb b/docs/io/visualization/montecarlo_packet_visualization.ipynb index 7f14b8ae58d..20eacf33bcf 100644 --- a/docs/io/visualization/montecarlo_packet_visualization.ipynb +++ b/docs/io/visualization/montecarlo_packet_visualization.ipynb @@ -7,6 +7,14 @@ "# Montecarlo Packet Visualization" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "This visualization tool plots the `RPackets` that are generated by the [Montecarlo](https://tardis-sn.github.io/tardis/physics/montecarlo/index.html) method and creates an animated plot that contains the packet trajectories as they move away from the photosphere.\n", + "The properties of individual RPackets are taken from the [rpacket_tracker](https://tardis-sn.github.io/tardis/io/output/rpacket_tracking.html). " + ] + }, { "cell_type": "code", "execution_count": null, @@ -88,8 +96,11 @@ "

The diagram above shows the packet trajectory as it starts from photosphere `P0` and continues to move along the subsequent points `P1`, `P2` and so on.\n", "\n", "
\n", - " Note:
\n", - " Here μ is the angle of direction of packet propagation with respect to line joining the center.\n", + "\n", + "Note\n", + " \n", + "Here `μ` is the angle of direction of packet propagation with respect to line joining the center.\n", + " \n", "
\n", "\n", "To determine the polar coordinates of any arbitrary point, let say `P2`, we need `r2` and `θ2`. `r2` is already present in the array obtained from the simulation. To determine `θ2`, we use sine rule and apply it on triangle `OP1P2`, where `O` is the center.\n", From 1e02ec2991316be7ae25a4c97fbd986c677818bc Mon Sep 17 00:00:00 2001 From: jayantbhakar Date: Tue, 16 Aug 2022 19:50:58 +0530 Subject: [PATCH 8/8] minor changes to math expressions --- .../montecarlo_packet_visualization.ipynb | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/docs/io/visualization/montecarlo_packet_visualization.ipynb b/docs/io/visualization/montecarlo_packet_visualization.ipynb index 20eacf33bcf..ebd21756299 100644 --- a/docs/io/visualization/montecarlo_packet_visualization.ipynb +++ b/docs/io/visualization/montecarlo_packet_visualization.ipynb @@ -93,17 +93,17 @@ "\\\n", "\n", "\n", - "

The diagram above shows the packet trajectory as it starts from photosphere `P0` and continues to move along the subsequent points `P1`, `P2` and so on.\n", + "

The diagram above shows the packet trajectory as it starts from photosphere `P0` and continues to move along the subsequent points `P1`, `P2`, and so on.\n", "\n", "
\n", "\n", "Note\n", " \n", - "Here `μ` is the angle of direction of packet propagation with respect to line joining the center.\n", + "Here `μ` represents the direction of packet propagation with respect to the radial line.\n", " \n", "
\n", "\n", - "To determine the polar coordinates of any arbitrary point, let say `P2`, we need `r2` and `θ2`. `r2` is already present in the array obtained from the simulation. To determine `θ2`, we use sine rule and apply it on triangle `OP1P2`, where `O` is the center.\n", + "To determine the polar coordinates of any arbitrary point, say `P2`, we need `r2` and `θ2`. `r2` is already present in the array obtained from the simulation. To determine `θ2`, we use sine rule and apply it to the triangle `OP1P2`, where `O` is the center.\n", "\n", "$$\n", "\\frac{r_{2}}{\\sin(\\pi - \\mu_{1})} = \\frac{r_{1}}{\\sin(\\alpha)}\n", @@ -112,7 +112,9 @@ "Now, writing `α` in terms of `μ1` and `θ2`\n", "\n", "$$ \n", - "α = μ_{1} - θ_{2} \\\\ \\\\\n", + "α = μ_{1} - θ_{2}\n", + "$$\n", + "$$\n", "\\frac{r_{2}}{\\sin(\\pi - \\mu_{1})} = \\frac{r_{1}}{\\sin(μ_{1} - θ_{2})}\n", "$$\n", "\n", @@ -230,8 +232,8 @@ "fig = go.Figure()\n", "\n", "# Set axes properties\n", - "fig.update_xaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"velocity (km/s)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", - "fig.update_yaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"velocity (km/s)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", + "fig.update_xaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"VELOCITY (KM/S)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", + "fig.update_yaxes(range=[-1.1*v_shells[-1],1.1*v_shells[-1]],title=\"VELOCITY (KM/S)\",exponentformat=\"none\",linecolor=\"#555\",gridcolor=\"#fafafa\",zerolinecolor=\"#fafafa\")\n", "\n", "# adding the shells\n", "shell_shapes={}\n",